Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 210 of 318
Found at i:66076722 original size:46 final size:44
Alignment explanation
Indices: 66076534--66076722 Score: 118
Period size: 46 Copynumber: 4.1 Consensus size: 44
66076524 CCTGCCCATA
* ** ** **
66076534 AGTGAACT-GGACTCAACTCAACGAGCTCGGGCGTTCGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATCC-T
* *
66076578 AAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---A-ATC-CT
* * *
66076628 --CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC--ATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCAAATCC-T
66076671 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AA-ATCCT
66076718 AGTGA
1 AGTGA
66076723 TATGTCACTT
Statistics
Matches: 113, Mismatches: 15, Indels: 31
0.71 0.09 0.19
Matches are distributed among these distances:
42 1 0.01
43 4 0.04
44 4 0.04
45 8 0.07
46 56 0.50
47 28 0.25
48 4 0.04
49 3 0.03
50 4 0.04
51 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATCCT
Found at i:66079086 original size:15 final size:15
Alignment explanation
Indices: 66079064--66079140 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
66079054 AAGAAAACGA
66079064 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
*
66079079 ATAGAGAAA-CC-AG
1 ATAAAGAAATCCAAG
66079092 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
66079107 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
66079123 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
66079138 ATA
1 ATA
66079141 TGATACTATG
Statistics
Matches: 52, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
13 2 0.04
14 10 0.19
15 39 0.75
16 1 0.02
ACGTcount: A:0.57, C:0.14, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:66079099 original size:29 final size:30
Alignment explanation
Indices: 66079062--66079140 Score: 99
Period size: 29 Copynumber: 2.7 Consensus size: 30
66079052 ACAAGAAAAC
*
66079062 GAATAAAGAAATCCAAGATAGAGA-AACCA
1 GAATAAAGAAATCCAAGATAAAGAGAACCA
*
66079091 GAATAAAGAAATCC-AGAATAAAGAGATCCA
1 GAATAAAGAAATCCAAG-ATAAAGAGAACCA
* *
66079121 GGATAAAGAAACCCAAGATA
1 GAATAAAGAAATCCAAGATA
66079141 TGATACTATG
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
28 2 0.05
29 20 0.47
30 19 0.44
31 2 0.05
ACGTcount: A:0.57, C:0.14, G:0.18, T:0.11
Consensus pattern (30 bp):
GAATAAAGAAATCCAAGATAAAGAGAACCA
Found at i:66082000 original size:46 final size:45
Alignment explanation
Indices: 66081878--66082007 Score: 154
Period size: 46 Copynumber: 2.8 Consensus size: 45
66081868 TGTAACCCGC
* *
66081878 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA-GCCTAGAT
* *** *
66081924 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGA-CATTAGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGGAGC-CTAG-AT
66081971 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
66082008 TGCCCAAATA
Statistics
Matches: 70, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
45 1 0.01
46 36 0.51
47 33 0.47
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCCTAGAT
Found at i:66086774 original size:40 final size:40
Alignment explanation
Indices: 66086668--66086851 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 40
66086658 TGCTGGAAAT
* * * * * **
66086668 TATAACCGGGTTAAGACCCGAAGGCAATGGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
*
66086708 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAT
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * *
66086748 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATC-G
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* ** * * * * *
66086786 TGATATCCGGGTTAACTCCCGTAGGCCTTGGTGCGGGTTAC
1 T-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * *
66086827 CATATCCGGGCTATGTCCCGAAGGC
1 TATATCCGGGCTAAGACCCGAAGGC
66086852 GTTTGAACGA
Statistics
Matches: 113, Mismatches: 28, Indels: 6
0.77 0.19 0.04
Matches are distributed among these distances:
38 1 0.01
39 28 0.25
40 84 0.74
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.23
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
Found at i:66092336 original size:27 final size:25
Alignment explanation
Indices: 66092288--66092346 Score: 64
Period size: 27 Copynumber: 2.3 Consensus size: 25
66092278 GCGAGGCTGC
*
66092288 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCA-A-A
* * *
66092315 CAGATATTGTGGCTAGGCCACCAAA
1 CAGATATTGTGACGAAGCCACCAAA
66092340 CAGATAT
1 CAGATAT
66092347 ATATATATAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
25 8 0.29
26 1 0.04
27 19 0.68
ACGTcount: A:0.36, C:0.20, G:0.22, T:0.22
Consensus pattern (25 bp):
CAGATATTGTGACGAAGCCACCAAA
Found at i:66093096 original size:27 final size:26
Alignment explanation
Indices: 66093044--66093097 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 26
66093034 TCACACAAGT
* *
66093044 TAGTCATTTACGCACGAGGGGTAAAA
1 TAGTCATTTACGCACGAAGGGCAAAA
* *
66093070 TAGTCATTTAACGCCCTAAGGGCAAAA
1 TAGTCATTT-ACGCACGAAGGGCAAAA
66093097 T
1 T
66093098 GGTAATTTTA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
26 9 0.39
27 14 0.61
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.24
Consensus pattern (26 bp):
TAGTCATTTACGCACGAAGGGCAAAA
Found at i:66093128 original size:27 final size:27
Alignment explanation
Indices: 66093099--66093243 Score: 168
Period size: 27 Copynumber: 5.4 Consensus size: 27
66093089 GGGCAAAATG
* * * * *
66093099 GTAATTTTACCCCACAAGAGTATCTCG
1 GTAATTCTACCCTACAAGGGTATTTCA
*
66093126 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
66093153 GTAATTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
* *
66093180 ATAATTCTACCCTAC-AGGGATATCTCA
1 GTAATTCTACCCTACAAGGG-TATTTCA
* *
66093207 GTAATTCTACCTTAC-AGGAGTATTTCG
1 GTAATTCTACCCTACAAGG-GTATTTCA
66093234 GTAATTCTAC
1 GTAATTCTAC
66093244 AACTTATCCA
Statistics
Matches: 103, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
26 4 0.04
27 98 0.95
28 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.33
Consensus pattern (27 bp):
GTAATTCTACCCTACAAGGGTATTTCA
Found at i:66093158 original size:54 final size:54
Alignment explanation
Indices: 66093099--66093243 Score: 200
Period size: 54 Copynumber: 2.7 Consensus size: 54
66093089 GGGCAAAATG
* * * * *
66093099 GTAATTTTACCCCACAAGAGTATCTCGGTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAAGAGTATTTCGGTAATTCTACCCTACAGGGATATCTCA
* **
66093153 GTAATTCTACCCTACAAGGGTATTTCAATAATTCTACCCTACAGGGATATCTCA
1 GTAATTCTACCCTACAAGAGTATTTCGGTAATTCTACCCTACAGGGATATCTCA
* *
66093207 GTAATTCTACCTTACAGGAGTATTTCGGTAATTCTAC
1 GTAATTCTACCCTACAAGAGTATTTCGGTAATTCTAC
66093244 AACTTATCCA
Statistics
Matches: 78, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 78 1.00
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.33
Consensus pattern (54 bp):
GTAATTCTACCCTACAAGAGTATTTCGGTAATTCTACCCTACAGGGATATCTCA
Found at i:66100002 original size:40 final size:41
Alignment explanation
Indices: 66099947--66100095 Score: 162
Period size: 40 Copynumber: 3.7 Consensus size: 41
66099937 TGAATGATAC
* * *
66099947 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGATGATCAAAT
* * *
66099987 CCGGGCTAAGACCCGAAGGCATTCGTG-TGAGTTG-TCATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCT-AGATGATCAAAT
* *
66100027 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGAT-ACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGATGATCAAAT
* * *
66100067 CCGGGTTAAGACCCAAAGGCAATTGTGCT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCT
66100096 TGTGGTTATA
Statistics
Matches: 91, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
39 1 0.01
40 88 0.97
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.23
Consensus pattern (41 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGATGATCAAAT
Found at i:66103903 original size:27 final size:27
Alignment explanation
Indices: 66103849--66103905 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
66103839 TACACACGAG
* *
66103849 GGGCAAAATAGTCATTTAACACCTTAA
1 GGGCAAAATAGTAATTTAACACCATAA
* * *
66103876 GGGCAAAATGGTAATTTTACCCCATAA
1 GGGCAAAATAGTAATTTAACACCATAA
66103903 GGG
1 GGG
66103906 TATCTCAGTA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.37, C:0.18, G:0.21, T:0.25
Consensus pattern (27 bp):
GGGCAAAATAGTAATTTAACACCATAA
Found at i:66103931 original size:27 final size:26
Alignment explanation
Indices: 66103903--66104083 Score: 209
Period size: 27 Copynumber: 6.8 Consensus size: 26
66103893 TACCCCATAA
* * *
66103903 GGGTATCTCAGTAATTCTACCTTACAA
1 GGGTATTTCGGTAATTCTACC-TACAG
* * * *
66103930 GGGTATTTTGGTATTTCTACCTGCAA
1 GGGTATTTCGGTAATTCTACCTACAG
66103956 GGGTATTTCGGTAATTCTATCCTACAG
1 GGGTATTTCGGTAATTCTA-CCTACAG
*
66103983 GGGTATTTCGGTAATTCTACCCTATAG
1 GGGTATTTCGGTAATTCTA-CCTACAG
** *
66104010 GGGTATTTCAATAATTCTACCCTATAG
1 GGGTATTTCGGTAATTCTA-CCTACAG
66104037 GGGTATTTCGGTAATTCTACCTTACAG
1 GGGTATTTCGGTAATTCTACC-TACAG
*
66104064 GGGTATTTCAGTAATTCTAC
1 GGGTATTTCGGTAATTCTAC
66104084 AACTTATCCA
Statistics
Matches: 135, Mismatches: 17, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
26 23 0.17
27 112 0.83
ACGTcount: A:0.24, C:0.18, G:0.20, T:0.38
Consensus pattern (26 bp):
GGGTATTTCGGTAATTCTACCTACAG
Found at i:66111421 original size:40 final size:39
Alignment explanation
Indices: 66111376--66111503 Score: 141
Period size: 40 Copynumber: 3.2 Consensus size: 39
66111366 CGGAATATAA
*
66111376 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TGCACAATTGCCTTCGGGTCTTAGC
** *
66111416 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACT-GCACAATTGCCTTCGGGTCTTAGC
* * * *
66111456 CCGGATATAATTTC-CAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAA--TCACTGCACAATTGCCTTCGGGTCTTAGC
66111496 CCGGATAT
1 CCGGATAT
66111504 CATTCAATTT
Statistics
Matches: 74, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
39 1 0.01
40 71 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (39 bp):
CCGGATATAATCACTGCACAATTGCCTTCGGGTCTTAGC
Found at i:66119408 original size:40 final size:40
Alignment explanation
Indices: 66119363--66119529 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
66119353 CGGAATATAA
66119363 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * *
66119403 CCGGATAGAAT-ACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
66119442 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
66119482 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
66119522 CCGGATAT
1 CCGGATAT
66119530 CATTCAATTT
Statistics
Matches: 107, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
38 1 0.01
39 33 0.31
40 73 0.68
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:66119427 original size:39 final size:39
Alignment explanation
Indices: 66119379--66119488 Score: 141
Period size: 39 Copynumber: 2.8 Consensus size: 39
66119369 ATAATCACGT
* *
66119379 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGA-ATACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAGACACTA
* *
66119418 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAGACACTA
*
66119458 GCACAATTGCCTTCGGGTCTTAACCCGGATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATA
66119489 TAATTTCCAG
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
39 33 0.52
40 30 0.48
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.24
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAGACACTA
Found at i:66122591 original size:2 final size:2
Alignment explanation
Indices: 66122584--66122623 Score: 66
Period size: 2 Copynumber: 21.0 Consensus size: 2
66122574 AAGAAAATGC
66122584 AT AT AT AT -T AT AT AT AT AT AT AT AT AT AT AT -T AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
66122624 TGATAGATTT
Statistics
Matches: 36, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
1 2 0.06
2 34 0.94
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:66124934 original size:28 final size:27
Alignment explanation
Indices: 66124871--66124940 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
66124861 ATAGTGAGTC
66124871 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
66124898 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
66124926 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
66124941 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:66129533 original size:40 final size:39
Alignment explanation
Indices: 66129385--66129591 Score: 156
Period size: 40 Copynumber: 5.2 Consensus size: 39
66129375 TTGAATGGTG
* * * *
66129385 TCCGGGCTAAGT-CCGAAGGCTTTTGTGCTAAGTGACTAAA
1 TCCGGGCTAATTCCCGAAGGC-ATTGTGC-GAGTCACTAAA
* * * *
66129425 TCCGGTC-AATTCCCGAAGGCATTCGTGTGAGTTACCAAA
1 TCCGGGCTAATTCCCGAAGGCATT-GTGCGAGTCACTAAA
* * * *
66129464 ACCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGGCTAATTCCCGAAGGCATT-GTGCGAGTCACTAAA
*
66129504 TCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 TCCGGGCTAATTCCCGAAGGC-ATTGTGCGAGTCACTA-AA
* *
66129545 -CCGGGCT-ATGT-CCAAAGGCAATTGTGCGAATCACTATAA
1 TCCGGGCTAAT-TCCCGAAGGC-ATTGTGCGAGTCACTA-AA
66129584 -CCGGGCTA
1 TCCGGGCTA
66129592 TGTGTTTGCA
Statistics
Matches: 141, Mismatches: 19, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
39 53 0.38
40 83 0.59
41 5 0.04
ACGTcount: A:0.27, C:0.24, G:0.25, T:0.24
Consensus pattern (39 bp):
TCCGGGCTAATTCCCGAAGGCATTGTGCGAGTCACTAAA
Found at i:66129572 original size:39 final size:39
Alignment explanation
Indices: 66129520--66129594 Score: 150
Period size: 39 Copynumber: 1.9 Consensus size: 39
66129510 CTAATTCCCG
66129520 AAGGCAATTGTGCGAATCACTATAACCGGGCTATGTCCA
1 AAGGCAATTGTGCGAATCACTATAACCGGGCTATGTCCA
66129559 AAGGCAATTGTGCGAATCACTATAACCGGGCTATGT
1 AAGGCAATTGTGCGAATCACTATAACCGGGCTATGT
66129595 GTTTGCACAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.31, C:0.21, G:0.24, T:0.24
Consensus pattern (39 bp):
AAGGCAATTGTGCGAATCACTATAACCGGGCTATGTCCA
Found at i:66129572 original size:79 final size:78
Alignment explanation
Indices: 66129386--66129591 Score: 202
Period size: 79 Copynumber: 2.6 Consensus size: 78
66129376 TGAATGGTGT
* * * *
66129386 CCGGGCTAAGTCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGTC-AATTCCCGAAGGCATTCG
1 CCGGGCTAAGTCCGAAGGC-ATTGTGC-GAGTCACTAAATCCGGGCTAATTCCCGAAGGCATTCG
* * *
66129450 TGTGAGTTACCAAAA
64 TGCGAATCACCAAAA
* *
66129465 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAATTCCCGAAGGCAATT-
1 CCGGGCTAAGT-CCGAAGGCATT-GTGCGAGTCACTAAATCCGGGCTAATTCCCGAAGGC-ATTC
* *
66129529 GTGCGAATCACTATAA
63 GTGCGAATCACCAAAA
* * *
66129545 CCGGGCTATGTCCAAAGGCAATTGTGCGAATCACTATAA-CCGGGCTA
1 CCGGGCTAAGTCCGAAGGC-ATTGTGCGAGTCACTA-AATCCGGGCTA
66129592 TGTGTTTGCA
Statistics
Matches: 106, Mismatches: 15, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
79 53 0.50
80 50 0.47
81 3 0.03
ACGTcount: A:0.27, C:0.24, G:0.25, T:0.24
Consensus pattern (78 bp):
CCGGGCTAAGTCCGAAGGCATTGTGCGAGTCACTAAATCCGGGCTAATTCCCGAAGGCATTCGTG
CGAATCACCAAAA
Found at i:66130407 original size:40 final size:40
Alignment explanation
Indices: 66130301--66130491 Score: 163
Period size: 40 Copynumber: 4.8 Consensus size: 40
66130291 TGAATGGTGT
* * * * * *
66130301 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTACCAAAA
*
66130342 CCGGG-TCAATTCCCGAAGGCATTCGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTCGTGCGAGTTACCAAAA
* * * * *
66130382 CCGTGTTAAGTCCCGAATGCATTCGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACCAAAA
* * * * *
66130422 CCGGGCTAATTCCCGAAGGCAATT-GTGCGAATCACTATAA
1 CCGGGCTAAGTCCCGAAGGC-ATTCGTGCGAGTTACCAAAA
*
66130462 CCGGGCTATGTCCCGAAGGCAATT-GTGCGA
1 CCGGGCTAAGTCCCGAAGGC-ATTCGTGCGA
66130492 ATCACTATAA
Statistics
Matches: 125, Mismatches: 22, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
40 98 0.78
41 27 0.22
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACCAAAA
Found at i:66130464 original size:80 final size:79
Alignment explanation
Indices: 66130301--66130491 Score: 215
Period size: 80 Copynumber: 2.4 Consensus size: 79
66130291 TGAATGGTGT
* *
66130301 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATTC
1 CCGGGCTAAGTCCCGAAGGC-ATTGTGC-GAGTGACTAAATCCGGGTCAATTCCCGAAGGCATTC
* *
66130366 GTGCGAGTTACCAAAA
64 GTGCGAATCACCAAAA
* * * *
66130382 CCGTGTTAAGTCCCGAATGCATTCGTGCGAGTTACTAAATCCGGG-CTAATTCCCGAAGGCAATT
1 CCGGGCTAAGTCCCGAAGGCATT-GTGCGAGTGACTAAATCCGGGTC-AATTCCCGAAGGC-ATT
* *
66130446 -GTGCGAATCACTATAA
63 CGTGCGAATCACCAAAA
*
66130462 CCGGGCTATGTCCCGAAGGCAATTGTGCGA
1 CCGGGCTAAGTCCCGAAGGC-ATTGTGCGA
66130492 ATCACTATAA
Statistics
Matches: 92, Mismatches: 14, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
79 1 0.01
80 64 0.70
81 27 0.29
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTGTGCGAGTGACTAAATCCGGGTCAATTCCCGAAGGCATTCGT
GCGAATCACCAAAA
Found at i:66131320 original size:40 final size:39
Alignment explanation
Indices: 66131225--66131433 Score: 195
Period size: 40 Copynumber: 5.2 Consensus size: 39
66131215 TGAATGGTGT
* * * *
66131225 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGC-ATTGTGC-GAGTTACTAAAA
* *
66131266 CCGGG-TCAATTCCCGAAGGCATTCGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATT-GTGCGAGTTACTAAAA
* * *
66131306 CCGGGTTAAGTCCCGAATGCATTCGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAAA
* * * *
66131346 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAAGTCCCGAAGGC-ATTGTGCGAGTTACTAAAA
* * * *
66131386 CCGGGCTATGTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAAGTCCCGAAGGC-ATTGTGCGAGTTACTAAAA
66131426 CCGGGCTA
1 CCGGGCTA
66131434 TGTGTTTGCA
Statistics
Matches: 145, Mismatches: 19, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
40 120 0.83
41 25 0.17
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.23
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAA
Found at i:66131327 original size:924 final size:926
Alignment explanation
Indices: 66128671--66133252 Score: 8762
Period size: 922 Copynumber: 5.0 Consensus size: 926
66128661 CATGTATATA
66128671 TGTTTGCACATGATGTATTGGTATGACATATATACTATCTCAAGGTATATATTTACTTATGATGA
1 TGTTTGCACATGATGTATTGGTATGACATATATACTATCTCAAGGTATATATTTACTTATGATGA
66128736 TGTTTCGGTTATGAAGGAAATGATAGATGTGTATTGAACTACAATATGTAATGCATTAGTTAGTA
66 TGTTTCGGTTATGAAGGAAATGATAGATGTGTATTGAACTACAATATGTAATGCATTAGTTAGTA
66128801 AAATGTATGCCGTTCATGTGTGGTATTAAACATGTAATTGGCCTCAACATCAACATGCATAATCG
131 AAATGTATGCCGTTCATGTGTGGTATTAAACATGTAATTGGCCTCAACATCAACATGCATAATCG
*
66128866 GCCACATGAATGAGTACATAGGTTGATGTGTTGTTCGGCCATAAGTAAGCATGTTGAAGGCTTTA
196 GCCACATGAATGAGTACATAGGTTGATGTGTTGTTCGGCCATAAGTAAGCATGTGGAAGGCTTTA
66128931 TCTCGACCTAGAAAATTCGGCTAAGGAGAGTACTAACTAATGTGTTGAGTTTGATGCATGATTTC
261 TCTCGACCTAGAAAATTCGGCTAAGGAGAGTACTAACTAATGTGTTGAGTTTGATGCATGATTTC
66128996 ACATGTATGTGACTTTAATGTCTAATGTATAAGTGTGGGCTAAGTGCCTTGTGTTCCTCTTTTCG
326 ACATGTATGTGACTTTAATGTCTAATGTATAAGTGTGGGCTAAGTGCCTTGTGTTCCTCTTTTCG
66129061 ATGCTCAAATGATTAAATCGATTTATTTATTTAATTAAGCTCAAGAGCAAAGGGGATCCAAATCC
391 ATGCTCAAATGATTAAATCGATTTATTTATTTAATTAAGCTCAAGAGCAAAGGGGATCCAAATCC
66129126 AATAAAGGGAAGGAAAAAGTGGTCGAATAGCCATCGAAATCGTTCGACAACATCCGAGGTAAGTT
456 AATAAAGGGAAGGAAAAAGTGGTCGAATAGCCATCGAAATCGTTCGACAACATCCGAGGTAAGTT
66129191 CTTGAGTAATAGAGCTTAAATTATGATTTGATTAGATCATGTCTCAAGTAAATCGAAANTCATGC
521 CTTGAGTAATAGAGCTTAAATTATGATTTGATTAGATCATGTCTCAAGTAAATCGAAA-TCATGC
66129256 TCTTTGTGTGTGGTTATTGAACCGAAATGTGCAAGAGTGATAAGTGTATTGTATTTGAGTTTTGC
585 TCTTTGTGTGTGGTTATTGAACCGAAATGTGCAAGAGTGATAAGTGTATTGTATTTGAGTTTTGC
66129321 TAATGAAAATGAAATA-GAATGTGTCATGATTTAGTGTTAAATGTGCATGTTTATTTGAATGGTG
650 TAATGAAAATGAAATACGAATGTGTCATGATTTAGTGTTAAATGTGCATGTTTATTTGAATGGTG
66129385 TCCGGGCTAAGT-CCGAAGGCTTTTGTGCTAAGTGACTAAATCC-GGTCAATTCCCGAAGGCATT
715 TCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATT
*
66129448 CGTGTGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTA
780 CGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTA
*
66129513 ATTCCCGAAGGCAATTGTGCGAATCACTATAACCGGGCTATGT-CCAAAGGCAATTGTGCGAATC
845 ATTCCCGAAGGCAATTGTGCGAATCACTATAACCGGGCTATGTCCCGAAGGCAATTGTGCGAATC
66129577 ACTATAACCGGGCTATG
910 ACTATAACCGGGCTATG
66129594 TGTTTGCACATGATG-ATTGGTATGACAT-TATACTATCTCAAGGTATATATTTACTTATGATGA
1 TGTTTGCACATGATGTATTGGTATGACATATATACTATCTCAAGGTATATATTTACTTATGATGA
66129657 TGTTTCGGTTATGAAGG-AATGATAGATGTGTATTGAACTACAATATGTAATGCATTAGTTAGTA
66 TGTTTCGGTTATGAAGGAAATGATAGATGTGTATTGAACTACAATATGTAATGCATTAGTTAGTA
66129721 AAATGTATGCCGTTCATGTGTGGTATTAAACATGTAATTGGCCTCAACATCAACATGCATAATCG
131 AAATGTATGCCGTTCATGTGTGGTATTAAACATGTAATTGGCCTCAACATCAACATGCATAATCG
66129786 G-C-CATGAATGAGTACATAGGTTGATGTGTTGTTCGGCCATAAGTAAGCATGTGGAAGGCTTTA
196 GCCACATGAATGAGTACATAGGTTGATGTGTTGTTCGGCCATAAGTAAGCATGTGGAAGGCTTTA
66129849 TCTCGACCTAGAAAATTCGGCTAAGGAGAGTACTAACTAATGTGTTGAGTTTGATGCATGATTTC
261 TCTCGACCTAGAAAATTCGGCTAAGGAGAGTACTAACTAATGTGTTGAGTTTGATGCATGATTTC
66129914 ACATGTATGTGACTTTAATGTCTAATGTATAAGTGTGGGCTAAGTGCCTTGTGTTCCTCTTTTCG
326 ACATGTATGTGACTTTAATGTCTAATGTATAAGTGTGGGCTAAGTGCCTTGTGTTCCTCTTTTCG
66129979 ATGCTCAAATGATTAAATCGATTTATTTATTTAATTAAGCTCAAGAGCAAAGGGGATCCAAATCC
391 ATGCTCAAATGATTAAATCGATTTATTTATTTAATTAAGCTCAAGAGCAAAGGGGATCCAAATCC
66130044 AATAAAGGGAAGGAAAAA-TGGTCGAATAGCCATCGAAATCGTTCGAC-ACATCCGAGGTAAGTT
456 AATAAAGGGAAGGAAAAAGTGGTCGAATAGCCATCGAAATCGTTCGACAACATCCGAGGTAAGTT
66130107 CTTGAGTAATAGAGCTTAAATTATGATTTGATTAGATCATGTCTCAAGTAAATCGAAATCATGCT
521 CTTGAGTAATAGAGCTTAAATTATGATTTGATTAGATCATGTCTCAAGTAAATCGAAATCATGCT
66130172 CTTT-TGTGTGTGTTATTGAACCG-AATGTGCAAGAGTGATAAGTGTATTGTATTTGAGTTTTGC
586 CTTTGTGTGTG-GTTATTGAACCGAAATGTGCAAGAGTGATAAGTGTATTGTATTTGAGTTTTGC
*
66130235 TAATGAAAATGAATTACGAATGTGTCATGATTTAGTGTTAAATGTGCATGTTTATTTGAATGGTG
650 TAATGAAAATGAAATACGAATGTGTCATGATTTAGTGTTAAATGTGCATGTTTATTTGAATGGTG
66130300 TCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATT
715 TCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATT
* *
66130365 CGTGCGAGTTACCAAAACCGTGTTAAGTCCCGAATGCATTCGTGCGAGTTACTAAATCCGGGCTA
780 CGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTA
66130430 ATTCCCGAAGGCAATTGTGCGAATCACTATAACCGGGCTATGTCCCGAAGGCAATTGTGCGAATC
845 ATTCCCGAAGGCAATTGTGCGAATCACTATAACCGGGCTATGTCCCGAAGGCAATTGTGCGAATC
66130495 ACTATAACC-GGCTATG
910 ACTATAACCGGGCTATG
66130511 TGTTTGCACATGATGTATTGGTATGACATATATACTATCTCAAGGTATATATTTACTTATGATGA
1 TGTTTGCACATGATGTATTGGTATGACATATATACTATCTCAAGGTATATATTTACTTATGATGA
66130576 TGTTTCGGTTATGAAGGAAATGATAGATGTGTATTGAACTACAATATGTAATGCATTAGTTTAGT
66 TGTTTCGGTTATGAAGGAAATGATAGATGTGTATTGAACTACAATATGTAATGCATTAG-TTAGT
66130641 AAAATGTATGCCGTTCATGTGTGGTATTAAACATGTAATTGGCCTCAACATCAACATGCATAATC
130 AAAATGTATGCCGTTCATGTGTGGTATTAAACATGTAATTGGCCTCAACATCAACATGCATAATC
*
66130706 GGCCACATGAATGAGTACTTAGGTTGATGTGTTGTTCGGCCATAAGTAAGCATGTGGAAGGCTTT
195 GGCCACATGAATGAGTACATAGGTTGATGTGTTGTTCGGCCATAAGTAAGCATGTGGAAGGCTTT
66130771 ATCTCGACCTAGAAAATTCGGCTAAGGAGAGTACTAACTAATGTGTTGAG-TTGATGCATGATTT
260 ATCTCGACCTAGAAAATTCGGCTAAGGAGAGTACTAACTAATGTGTTGAGTTTGATGCATGATTT
66130835 CACATGTATGTGACTTTAATGTCTAATGTATAAGTGTGGGCTAAGTGCCTTGTGTTCCTCTTTTC
325 CACATGTATGTGACTTTAATGTCTAATGTATAAGTGTGGGCTAAGTGCCTTGTGTTCCTCTTTTC
66130900 GATGCTCAAATGATTAAATCGATTTATTTATTTAATTAAGCTCAAGAGCAAA-GGGATCCAAATC
390 GATGCTCAAATGATTAAATCGATTTATTTATTTAATTAAGCTCAAGAGCAAAGGGGATCCAAATC
66130964 CAATAAAGGGAAGGAAAAAGTGGTCGAATAGCCATCGAAATCGTTCGACAACATCCGAGGTAAGT
455 CAATAAAGGGAAGGAAAAAGTGGTCGAATAGCCATCGAAATCGTTCGACAACATCCGAGGTAAGT
66131029 TCTTGAGTAATAGAGCTTAAATTATGATTTGATTAGATCATGTCTCAAGTAAATCGAAATCATGC
520 TCTTGAGTAATAGAGCTTAAATTATGATTTGATTAGATCATGTCTCAAGTAAATCGAAATCATGC
*
66131094 TCTTTGTGTGTGGATATTGAACCGAAATGTGCAAGAGTGATAAGTGTATTGTATTTGAGTTTTGC
585 TCTTTGTGTGTGGTTATTGAACCGAAATGTGCAAGAGTGATAAGTGTATTGTATTTGAGTTTTGC
*
66131159 TAATGAAAATGAATTACGAATGTGTCATGATTTAGTGTTAAATGTGCATGTTTATTTGAATGGTG
650 TAATGAAAATGAAATACGAATGTGTCATGATTTAGTGTTAAATGTGCATGTTTATTTGAATGGTG
66131224 TCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATT
715 TCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATT
*
66131289 CGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAATGCATTCGTGCGAGTTACTAAATCCGGGCTA
780 CGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTA
66131354 ATTCCCGAAGGCAATTGTGCGAATCACTATAACCGGGCTATGTCCCGAAGGCAATTGTGCGAATC
845 ATTCCCGAAGGCAATTGTGCGAATCACTATAACCGGGCTATGTCCCGAAGGCAATTGTGCGAATC
66131419 ACTATAACCGGGCTATG
910 ACTATAACCGGGCTATG
66131436 TGTTTGCACATGATGTATTGGTATGACATATATACTATCTCAAGGTATATATTTACTTATGATGA
1 TGTTTGCACATGATGTATTGGTATGACATATATACTATCTCAAGGTATATATTTACTTATGATGA
66131501 TGTTTCGGTTATGAAGGAAATGATAGATGTGTATTGAACTACAATATGTAATGCATTAGTTAGTA
66 TGTTTCGGTTATGAAGGAAATGATAGATGTGTATTGAACTACAATATGTAATGCATTAGTTAGTA
66131566 AAATGTATGCCGTTCATGTGTGGTATTAAACATGTAATTGGCCTCAACATCAACATGCATAATCG
131 AAATGTATGCCGTTCATGTGTGGTATTAAACATGTAATTGGCCTCAACATCAACATGCATAATCG
*
66131631 GCCACATGAATGAGTACTTAGGTTGATGTGTTGTTCGGCCATAAGTAAGCATGTGGAAGGCTTTA
196 GCCACATGAATGAGTACATAGGTTGATGTGTTGTTCGGCCATAAGTAAGCATGTGGAAGGCTTTA
66131696 TCTCGACCTAGAAAATTCGGCTAAGGAGAGTACTAACTAATGTGTTGAGTTTGATGCATGATTTC
261 TCTCGACCTAGAAAATTCGGCTAAGGAGAGTACTAACTAATGTGTTGAGTTTGATGCATGATTTC
66131761 ACATGTATGTGACTTTAATGTCTAATGTATAAGTGTGGGCTAAGTGCCTTGTGTTCCTCTTTTCG
326 ACATGTATGTGACTTTAATGTCTAATGTATAAGTGTGGGCTAAGTGCCTTGTGTTCCTCTTTTCG
66131826 ATGCTCAAATGATTAAATCGATTTATTTATTTAATTAAGCTCAAGAGCAAAGGGGATCCAAATCC
391 ATGCTCAAATGATTAAATCGATTTATTTATTTAATTAAGCTCAAGAGCAAAGGGGATCCAAATCC
66131891 AATAAAGGGAAGGAAAAAGTGGTCGAATAGCCATCGAAATCGTTCGAC-A-ATCCGAGGTAAGTT
456 AATAAAGGGAAGGAAAAAGTGGTCGAATAGCCATCGAAATCGTTCGACAACATCCGAGGTAAGTT
66131954 C-TGAGTAATAGAGCTTAAATTATGATTTGATTAGATCATGTCTCAAGTAAATCGAAATCATGCT
521 CTTGAGTAATAGAGCTTAAATTATGATTTGATTAGATCATGTCTCAAGTAAATCGAAATCATGCT
66132018 C-TTGTGTGTGGTTATTGAACCGAAATGTGCAAGAGTGATAAGTGTATTGTATTTGAGTTTTGCT
586 CTTTGTGTGTGGTTATTGAACCGAAATGTGCAAGAGTGATAAGTGTATTGTATTTGAGTTTTGCT
*
66132082 AATGAAAATGAAATACGAATGTGTCATGATTTAGTGTTAAATGTGCATGTTTATTCGAATGGTGT
651 AATGAAAATGAAATACGAATGTGTCATGATTTAGTGTTAAATGTGCATGTTTATTTGAATGGTGT
*
66132147 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGAGTCAATTCCCGAAGGCATTC
716 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATTC
66132212 GTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAA
781 GTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAA
*
66132277 TTCCCGAAGGCAATTGTGCGAATCACTATAACCGGGCTATGTCCCGAAGGCAATTGTGTGAATCA
846 TTCCCGAAGGCAATTGTGCGAATCACTATAACCGGGCTATGTCCCGAAGGCAATTGTGCGAATCA
66132342 CTATAACCGGGCTATG
911 CTATAACCGGGCTATG
66132358 TGTTTGCACATGATGTATTGGTATGACATATATACTATCTCAAGGTATATATTTACTTATGATGA
1 TGTTTGCACATGATGTATTGGTATGACATATATACTATCTCAAGGTATATATTTACTTATGATGA
*
66132423 TGTTTCGGTTATGAAGGAAATCATAGATGTGTATTGAACTACAATATGTAATGCATTAGTTAGTA
66 TGTTTCGGTTATGAAGGAAATGATAGATGTGTATTGAACTACAATATGTAATGCATTAGTTAGTA
*
66132488 AAATGTATGCCGTTCATGTGTGGTATTAAACATGTAATTGGCCTCAACATCAACATGCATAATCA
131 AAATGTATGCCGTTCATGTGTGGTATTAAACATGTAATTGGCCTCAACATCAACATGCATAATCG
* *
66132553 GCCACATGAATGAGTACATAGGTTGATGTGTTGTTCGGCCATAAGTATGCATGTTGAAGGCTTTA
196 GCCACATGAATGAGTACATAGGTTGATGTGTTGTTCGGCCATAAGTAAGCATGTGGAAGGCTTTA
66132618 TCTCGACCTAGAAAATTCGGCTAAGGAGAGTACTAACTAATGTGTTGAGTTTGATGCATGATTTC
261 TCTCGACCTAGAAAATTCGGCTAAGGAGAGTACTAACTAATGTGTTGAGTTTGATGCATGATTTC
66132683 ACATGTATGTGACTTTAATGTCTAATGTATAAGTGTGGGCTAAGTGCCTTGTGTTCCTCTTTTCG
326 ACATGTATGTGACTTTAATGTCTAATGTATAAGTGTGGGCTAAGTGCCTTGTGTTCCTCTTTTCG
*
66132748 ATGCTCAAATGATTAAATCAATTTATTTATTTAATTAAGCTCAAGAGCAAAGGGGATCCAAATCC
391 ATGCTCAAATGATTAAATCGATTTATTTATTTAATTAAGCTCAAGAGCAAAGGGGATCCAAATCC
66132813 AATAAAGGGAAGGAAAAAGTGGTCGAATAGCCATCGAAATCGTTCGACAACATCCGAGGTAAGTT
456 AATAAAGGGAAGGAAAAAGTGGTCGAATAGCCATCGAAATCGTTCGACAACATCCGAGGTAAGTT
66132878 CTTGAGTAATA-AGCTTAAATTATGATTTGATTAGATCATGTCTCAAGTAAATCGAAATCATGCT
521 CTTGAGTAATAGAGCTTAAATTATGATTTGATTAGATCATGTCTCAAGTAAATCGAAATCATGCT
*
66132942 CTTTGTGTGTGGATATTGAACCGAAATGTGCAAGAGTGATAAGTGTATTGTATTTGAGTTTTGCT
586 CTTTGTGTGTGGTTATTGAACCGAAATGTGCAAGAGTGATAAGTGTATTGTATTTGAGTTTTGCT
*
66133007 AATG-AAATGAAATACGAATGTGTCATGATTTAGTGTTAAATGTGCATGTTTATTCGAATGGTGT
651 AATGAAAATGAAATACGAATGTGTCATGATTTAGTGTTAAATGTGCATGTTTATTTGAATGGTGT
66133071 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATTC
716 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATTC
66133136 GTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAA
781 GTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAA
* *
66133201 TTCCCGAA-GC-ATTGTGTGAATCACTATAACCGGGCTATGTCCCGAAGACAAT
846 TTCCCGAAGGCAATTGTGCGAATCACTATAACCGGGCTATGTCCCGAAGGCAAT
66133253 CGAGCGAGTC
Statistics
Matches: 3612, Mismatches: 25, Indels: 45
0.98 0.01 0.01
Matches are distributed among these distances:
914 61 0.02
915 83 0.02
916 105 0.03
917 176 0.05
918 315 0.09
919 53 0.01
920 154 0.04
921 155 0.04
922 1044 0.29
923 287 0.08
924 780 0.22
925 338 0.09
926 61 0.02
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.32
Consensus pattern (926 bp):
TGTTTGCACATGATGTATTGGTATGACATATATACTATCTCAAGGTATATATTTACTTATGATGA
TGTTTCGGTTATGAAGGAAATGATAGATGTGTATTGAACTACAATATGTAATGCATTAGTTAGTA
AAATGTATGCCGTTCATGTGTGGTATTAAACATGTAATTGGCCTCAACATCAACATGCATAATCG
GCCACATGAATGAGTACATAGGTTGATGTGTTGTTCGGCCATAAGTAAGCATGTGGAAGGCTTTA
TCTCGACCTAGAAAATTCGGCTAAGGAGAGTACTAACTAATGTGTTGAGTTTGATGCATGATTTC
ACATGTATGTGACTTTAATGTCTAATGTATAAGTGTGGGCTAAGTGCCTTGTGTTCCTCTTTTCG
ATGCTCAAATGATTAAATCGATTTATTTATTTAATTAAGCTCAAGAGCAAAGGGGATCCAAATCC
AATAAAGGGAAGGAAAAAGTGGTCGAATAGCCATCGAAATCGTTCGACAACATCCGAGGTAAGTT
CTTGAGTAATAGAGCTTAAATTATGATTTGATTAGATCATGTCTCAAGTAAATCGAAATCATGCT
CTTTGTGTGTGGTTATTGAACCGAAATGTGCAAGAGTGATAAGTGTATTGTATTTGAGTTTTGCT
AATGAAAATGAAATACGAATGTGTCATGATTTAGTGTTAAATGTGCATGTTTATTTGAATGGTGT
CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATTC
GTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAA
TTCCCGAAGGCAATTGTGCGAATCACTATAACCGGGCTATGTCCCGAAGGCAATTGTGCGAATCA
CTATAACCGGGCTATG
Found at i:66131359 original size:80 final size:79
Alignment explanation
Indices: 66131225--66131433 Score: 226
Period size: 80 Copynumber: 2.6 Consensus size: 79
66131215 TGAATGGTGT
* * *
66131225 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGG-TCAATTCCCGAAGGC-AT
1 CCGGGCTAAGTCCCGAAGGC-ATTGTGC-GAGTCACTAAATCCGGGCT-AATTCCCGAAGGCAAT
* *
66131288 TCGTGCGAGTTACCAAAA
63 T-GTGCGAATCACCAAAA
* * *
66131306 CCGGGTTAAGTCCCGAATGCATTCGTGCGAGTTACTAAATCCGGGCTAATTCCCGAAGGCAATTG
1 CCGGGCTAAGTCCCGAAGGCATT-GTGCGAGTCACTAAATCCGGGCTAATTCCCGAAGGCAATTG
* *
66131371 TGCGAATCACTATAA
65 TGCGAATCACCAAAA
* *
66131386 CCGGGCTATGTCCCGAAGGCAATTGTGCGAATCACTATAA-CCGGGCTA
1 CCGGGCTAAGTCCCGAAGGC-ATTGTGCGAGTCACTA-AATCCGGGCTA
66131434 TGTGTTTGCA
Statistics
Matches: 109, Mismatches: 14, Indels: 11
0.81 0.10 0.08
Matches are distributed among these distances:
80 78 0.72
81 31 0.28
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.23
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTGTGCGAGTCACTAAATCCGGGCTAATTCCCGAAGGCAATTGT
GCGAATCACCAAAA
Found at i:66132247 original size:40 final size:40
Alignment explanation
Indices: 66132147--66132355 Score: 190
Period size: 40 Copynumber: 5.2 Consensus size: 40
66132137 CGAATGGTGT
* * * * *
66132147 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAAA
* * *
66132188 CCGAG-TCAATTCCCGAAGGCATTCGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTCGTGCGAGTTACTAAAA
* *
66132228 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAA
* * * *
66132268 CCGGGCTAATTCCCGAAGGCAATT-GTGCGAATCACTATAA
1 CCGGGCTAAGTCCCGAAGGC-ATTCGTGCGAGTTACTAAAA
* * * * *
66132308 CCGGGCTATGTCCCGAAGGCAATT-GTGTGAATCACTATAA
1 CCGGGCTAAGTCCCGAAGGC-ATTCGTGCGAGTTACTAAAA
66132348 CCGGGCTA
1 CCGGGCTA
66132356 TGTGTTTGCA
Statistics
Matches: 144, Mismatches: 21, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
40 118 0.82
41 26 0.18
ACGTcount: A:0.27, C:0.24, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAA
Found at i:66132283 original size:80 final size:81
Alignment explanation
Indices: 66132147--66132328 Score: 226
Period size: 80 Copynumber: 2.3 Consensus size: 81
66132137 CGAATGGTGT
* *
66132147 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGAGTCAATTCCCGAAGGC-ATT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGAGTCAATTCCCGAAGGCAATT
* *
66132211 CGTGCGAGTTACCAAAA
66 -GTGCGAATCACCAAAA
* * * *
66132228 CCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAATCCG-GGCTAATTCCCGAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGAGTC-AATTCCCGAAGGCAAT
* *
66132291 TGTGCGAATCACTATAA
65 TGTGCGAATCACCAAAA
*
66132308 CCGGGCTATGTCCCGAAGGCA
1 CCGGGCTAAGTCCCGAAGGCA
66132329 ATTGTGTGAA
Statistics
Matches: 87, Mismatches: 12, Indels: 5
0.84 0.12 0.05
Matches are distributed among these distances:
79 2 0.02
80 57 0.66
81 28 0.32
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGAGTCAATTCCCGAAGGCAATT
GTGCGAATCACCAAAA
Found at i:66132352 original size:80 final size:80
Alignment explanation
Indices: 66132147--66132355 Score: 219
Period size: 80 Copynumber: 2.6 Consensus size: 80
66132137 CGAATGGTGT
* * * * *
66132147 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGAG-TCAATTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAA-TCACTAAATCCGGGCT-AATTCCCGAAGGCATT
* *
66132211 CGTGCGAGTTACCAAAA
64 CGTGCGAATCACCAAAA
* * *
66132228 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAATTCCCGAAGGCAATT-
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAATCACTAAATCCGGGCTAATTCCCGAAGGC-ATTC
* *
66132292 GTGCGAATCACTATAA
65 GTGCGAATCACCAAAA
* *
66132308 CCGGGCTATGTCCCGAAGGCAATT-GTGTGAATCACTATAA-CCGGGCTA
1 CCGGGCTAAGTCCCGAAGGC-ATTCGTGCGAATCACTA-AATCCGGGCTA
66132356 TGTGTTTGCA
Statistics
Matches: 108, Mismatches: 16, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
80 73 0.68
81 35 0.32
ACGTcount: A:0.27, C:0.24, G:0.25, T:0.23
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAATCACTAAATCCGGGCTAATTCCCGAAGGCATTCG
TGCGAATCACCAAAA
Found at i:66133166 original size:40 final size:40
Alignment explanation
Indices: 66133070--66133261 Score: 185
Period size: 40 Copynumber: 4.8 Consensus size: 40
66133060 TCGAATGGTG
* * * *
66133070 TCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
* *
66133111 TCCGGG-TCAATTCCCGAAGGCATTCGTGCGAGTTACCAAA
1 TCCGGGCT-AAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
66133151 ACCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * * *
66133191 TCCGGGCTAATTCCCGAA-GCATT-GTGTGAATCACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTA-AA
* * * *
66133230 -CCGGGCTATGTCCCGAAGACAATCGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGT
66133262 CGCTATATCC
Statistics
Matches: 124, Mismatches: 22, Indels: 11
0.79 0.14 0.07
Matches are distributed among these distances:
38 25 0.20
39 10 0.08
40 64 0.52
41 25 0.20
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:66133272 original size:78 final size:80
Alignment explanation
Indices: 66133105--66133287 Score: 194
Period size: 78 Copynumber: 2.3 Consensus size: 80
66133095 GTGCTAAGTG
* * *
66133105 ACTAAATCCGGGTCAATTCCCGAAGGCATTCGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAG
1 ACTAAATCCGGGTCAATTCCCGAAGGCATTCGTGCGAATCACCAAAACCGGGCTAAGTCCCGAAG
* * * *
66133170 GCATTCGTGCGAGTT
66 ACAATCGAGCGAGTC
* * * *
66133185 ACTAAATCCGGG-CTAATTCCCGAA-GCATT-GTGTGAATCACTATAACCGGGCTATGTCCCGAA
1 ACTAAATCCGGGTC-AATTCCCGAAGGCATTCGTGCGAATCACCAAAACCGGGCTAAGTCCCGAA
66133247 GACAATCGAGCGAGTC
65 GACAATCGAGCGAGTC
* * * *
66133263 GCTATATCCGGTTAAATT-CCGAAGG
1 ACTAAATCCGGGTCAATTCCCGAAGG
66133288 TACGTGATTC
Statistics
Matches: 85, Mismatches: 15, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
77 5 0.06
78 52 0.61
79 6 0.07
80 22 0.26
ACGTcount: A:0.28, C:0.25, G:0.25, T:0.23
Consensus pattern (80 bp):
ACTAAATCCGGGTCAATTCCCGAAGGCATTCGTGCGAATCACCAAAACCGGGCTAAGTCCCGAAG
ACAATCGAGCGAGTC
Found at i:66134833 original size:19 final size:19
Alignment explanation
Indices: 66134797--66134835 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
66134787 TTTTCATCAT
* *
66134797 AGTAAAATAAAATAATAAA
1 AGTAAAACAAAACAATAAA
*
66134816 AGTAAAACAAAACCATAAA
1 AGTAAAACAAAACAATAAA
66134835 A
1 A
66134836 ATAATTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.72, C:0.08, G:0.05, T:0.15
Consensus pattern (19 bp):
AGTAAAACAAAACAATAAA
Found at i:66135344 original size:28 final size:29
Alignment explanation
Indices: 66135271--66135358 Score: 94
Period size: 28 Copynumber: 3.1 Consensus size: 29
66135261 AGCATGGCTG
* * * *
66135271 CCAGATACAGA-AA-ATGTGACAGAGTCA
1 CCAGATACAGATAATTTGTGGCATAGCCA
*
66135298 CCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAATTTGTGGCA-TAGCCA
66135327 CCAGA-ACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAATTTGTGGCATAGCCA
66135355 CCAG
1 CCAG
66135359 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
27 12 0.24
28 25 0.49
29 14 0.27
ACGTcount: A:0.35, C:0.22, G:0.23, T:0.20
Consensus pattern (29 bp):
CCAGATACAGATAATTTGTGGCATAGCCA
Found at i:66135510 original size:28 final size:28
Alignment explanation
Indices: 66135463--66135527 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
66135453 AAATTAACCC
*
66135463 TAGGGGTATAAAGGTCATTTAGCATACA
1 TAGGGGTATAAAGGTAATTTAGCATACA
* *
66135491 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTAGCATACA
66135519 TAGGGGTAT
1 TAGGGGTAT
66135528 TCTAGTAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.32, C:0.08, G:0.28, T:0.32
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTAGCATACA
Found at i:66141014 original size:30 final size:28
Alignment explanation
Indices: 66140978--66141033 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 28
66140968 GGAAAAAATG
66140978 TTTTTTC-ATTCTTCTTTCTCTCCTTTTTCC
1 TTTTTTCTATT-TTCTTT-T-TCCTTTTTCC
66141008 TTTTTTCTATTTTCTTTTTCCTTTTT
1 TTTTTTCTATTTTCTTTTTCCTTTTT
66141034 TATAGTGTAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
28 8 0.32
29 1 0.04
30 13 0.52
31 3 0.12
ACGTcount: A:0.04, C:0.23, G:0.00, T:0.73
Consensus pattern (28 bp):
TTTTTTCTATTTTCTTTTTCCTTTTTCC
Found at i:66147545 original size:41 final size:41
Alignment explanation
Indices: 66147500--66147617 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
66147490 TGAAAGATAA
66147500 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
66147541 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
66147571 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
66147612 ATGTAG
1 ATGTAG
66147618 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:66147556 original size:71 final size:71
Alignment explanation
Indices: 66147468--66147631 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
66147458 GAGATGTATC
66147468 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
66147533 AGGACA
66 AGGACA
66147539 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
66147604 AGGACA
66 AGGACA
66147610 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
66147632 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:66155124 original size:41 final size:41
Alignment explanation
Indices: 66155079--66155196 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
66155069 TGAAAGATAA
66155079 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
66155120 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
66155150 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
66155191 ATGTAG
1 ATGTAG
66155197 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:66155135 original size:71 final size:71
Alignment explanation
Indices: 66155047--66155210 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
66155037 GAGATGTATC
66155047 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
66155112 AGGACA
66 AGGACA
66155118 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
66155183 AGGACA
66 AGGACA
66155189 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
66155211 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:66158846 original size:13 final size:13
Alignment explanation
Indices: 66158801--66158838 Score: 76
Period size: 13 Copynumber: 2.9 Consensus size: 13
66158791 ATCGAACACA
66158801 GGCGTGTGCCATG
1 GGCGTGTGCCATG
66158814 GGCGTGTGCCATG
1 GGCGTGTGCCATG
66158827 GGCGTGTGCCAT
1 GGCGTGTGCCAT
66158839 AGGGGTGTCC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.08, C:0.24, G:0.45, T:0.24
Consensus pattern (13 bp):
GGCGTGTGCCATG
Found at i:66160853 original size:46 final size:46
Alignment explanation
Indices: 66160803--66160975 Score: 169
Period size: 46 Copynumber: 3.7 Consensus size: 46
66160793 TGGTTGAGCA
66160803 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
66160849 TCCGAACTCGTTGAGTTGAGTCCGAGTT--C--GTGGAATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG-ATGCGAA-T--G
* * *
66160894 CATCTGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
66160942 -CCTGAGCTCATTGAGTTGAGTTCGAGTTCACTTA
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
66160976 GGAGCGGGTT
Statistics
Matches: 103, Mismatches: 12, Indels: 24
0.74 0.09 0.17
Matches are distributed among these distances:
42 5 0.05
43 4 0.04
44 1 0.01
45 2 0.02
46 55 0.53
47 26 0.25
48 1 0.01
49 1 0.01
50 3 0.03
51 5 0.05
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:66160959 original size:93 final size:93
Alignment explanation
Indices: 66160800--66160970 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
66160790 GGATGGTTGA
* *
66160800 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCATTGAGT
66160865 TGAGTCCGAGTTCGTGGAATGTAACTAG
66 TGAGTCCGAGTTCGTGGAATGTAACTAG
* * *
66160893 GCATCTGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG-CCTGAGCTCATTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCATTGAG
*
66160957 TTGAGTTCGAGTTC
65 TTGAGTCCGAGTTC
66160971 ACTTAGGAGC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 2 0.03
93 69 0.97
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGGAATGTAACTAG
Found at i:66163483 original size:18 final size:18
Alignment explanation
Indices: 66163462--66163503 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
66163452 TATTTTTGTT
* *
66163462 ATATATTTATTTTTAAAA
1 ATATATTTATTATAAAAA
66163480 ATAT-TTTATTATAAAAA
1 ATATATTTATTATAAAAA
66163497 AT-TATTT
1 ATATATTT
66163504 GGTACACTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
16 1 0.05
17 16 0.76
18 4 0.19
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (18 bp):
ATATATTTATTATAAAAA
Found at i:66168848 original size:26 final size:26
Alignment explanation
Indices: 66168819--66168875 Score: 105
Period size: 26 Copynumber: 2.2 Consensus size: 26
66168809 CATCAAAGTA
66168819 CAAATCCGATCTCACTTCAATCTCCT
1 CAAATCCGATCTCACTTCAATCTCCT
*
66168845 CAAATCCGATCTCACTTCGATCTCCT
1 CAAATCCGATCTCACTTCAATCTCCT
66168871 CAAAT
1 CAAAT
66168876 GGAACGATAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.28, C:0.37, G:0.05, T:0.30
Consensus pattern (26 bp):
CAAATCCGATCTCACTTCAATCTCCT
Found at i:66188348 original size:40 final size:40
Alignment explanation
Indices: 66188252--66188433 Score: 220
Period size: 40 Copynumber: 4.5 Consensus size: 40
66188242 CGAATGGTGT
* * * * * *
66188252 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACCAAAA
* * *
66188293 CCGGGTCAATTCCCGAAGGCATTTGTGCTAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
66188333 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * * *
66188373 CCGGGTTAAGACCCGAAGGCATTCGTGCGAGTTACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* *
66188413 CCGGGCTAATTCCCGAAGGCA
1 CCGGGTTAAGTCCCGAAGGCA
66188434 ATTGAACGAA
Statistics
Matches: 123, Mismatches: 18, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
40 99 0.80
41 24 0.20
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
Found at i:66188455 original size:80 final size:80
Alignment explanation
Indices: 66188304--66188496 Score: 197
Period size: 80 Copynumber: 2.4 Consensus size: 80
66188294 CGGGTCAATT
* * * * * * ** * *
66188304 CCCGAAGGCATTTGTGCTAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACC
1 CCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCAATTGAACGAATCACC
*
66188369 AAAACCGGGTTAAGA
66 AAAACCGGGCTAAGA
* *
66188384 CCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAATTCCCGAAGGCAATTGAACGAATCACT
1 CCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCAATTGAACGAATCACC
* * *
66188449 ATAACCGGGCTATGT
66 AAAACCGGGCTAAGA
* * * * *
66188464 CCCGAAGACAATCGAGCGAGTCACTATATCCGG
1 CCCGAAGGCATTCGTGCGAGTTACTAAATCCGG
66188497 TTAAATTCCG
Statistics
Matches: 92, Mismatches: 21, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
80 92 1.00
ACGTcount: A:0.29, C:0.25, G:0.25, T:0.21
Consensus pattern (80 bp):
CCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCAATTGAACGAATCACC
AAAACCGGGCTAAGA
Found at i:66188457 original size:40 final size:40
Alignment explanation
Indices: 66188413--66188496 Score: 107
Period size: 40 Copynumber: 2.1 Consensus size: 40
66188403 GTTACTAAAT
* *
66188413 CCGGGCTAAT-TCCCGAAGGCAATTGAACGAATCACTATAA
1 CCGGGCT-ATGTCCCGAAGACAATCGAACGAATCACTATAA
* * *
66188453 CCGGGCTATGTCCCGAAGACAATCGAGCGAGTCACTATAT
1 CCGGGCTATGTCCCGAAGACAATCGAACGAATCACTATAA
66188493 CCGG
1 CCGG
66188497 TTAAATTCCG
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
39 2 0.05
40 36 0.95
ACGTcount: A:0.30, C:0.27, G:0.24, T:0.19
Consensus pattern (40 bp):
CCGGGCTATGTCCCGAAGACAATCGAACGAATCACTATAA
Found at i:66188466 original size:120 final size:121
Alignment explanation
Indices: 66188252--66188470 Score: 271
Period size: 120 Copynumber: 1.8 Consensus size: 121
66188242 CGAATGGTGT
* * * *
66188252 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATTT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
** * * * *
66188317 GTGCTAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
66 GAACGAATCACCAAAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * *
66188373 CCGGGTTAAGACCCGAAGGCATTCGTGC-GAGTTACTAAATCCGGG-CTAATTCCCGAAGGCAAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTC-AATTCCCGAAGGCAAT
* * *
66188436 TGAACGAATCACTATAACCGGGCTATGTCCCGAAG
65 TGAACGAATCACCAAAACCGGGCTAAGTCCCGAAG
66188471 ACAATCGAGC
Statistics
Matches: 81, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
119 1 0.01
120 56 0.69
121 24 0.30
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (121 bp):
CCGGGCTAAGACCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
GAACGAATCACCAAAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
Found at i:66191243 original size:74 final size:77
Alignment explanation
Indices: 66191160--66191312 Score: 258
Period size: 78 Copynumber: 2.0 Consensus size: 77
66191150 CCATCAAGAA
*
66191160 ATATGGGCAATGCTAGTG-G-TG-GTCAGAGAGGATCTAGAGATGCTACGACCAGATCCGAGGCT
1 ATATGGGCAATGCTAGTGCGAGGAGTCAGAGAGGATCTAGAGATGCTACGACCAGATCCGAGGCT
66191222 AGCGCTCCTGCT
66 AGCGCTCCTGCT
66191234 ATATGGGCAATGCTAGTGCGAGGATGTCAGAGAGGATCTAGAGATGCTACGACCAGATCCGAGGC
1 ATATGGGCAATGCTAGTGCGAGGA-GTCAGAGAGGATCTAGAGATGCTACGACCAGATCCGAGGC
*
66191299 TCGCGCTCCTGCT
65 TAGCGCTCCTGCT
66191312 A
1 A
66191313 GGGCTTATGC
Statistics
Matches: 73, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
74 18 0.25
75 1 0.01
76 1 0.01
78 53 0.73
ACGTcount: A:0.25, C:0.22, G:0.32, T:0.21
Consensus pattern (77 bp):
ATATGGGCAATGCTAGTGCGAGGAGTCAGAGAGGATCTAGAGATGCTACGACCAGATCCGAGGCT
AGCGCTCCTGCT
Found at i:66201086 original size:28 final size:29
Alignment explanation
Indices: 66201054--66201119 Score: 107
Period size: 29 Copynumber: 2.3 Consensus size: 29
66201044 ATTTACTAGA
*
66201054 ATACCCCTATGTATGC-AAAATTACCATT
1 ATACCCCTATGTATGCTAAAATGACCATT
*
66201082 ATACCCCTATGTATGCTAAAATGACCTTT
1 ATACCCCTATGTATGCTAAAATGACCATT
66201111 ATACCCCTA
1 ATACCCCTA
66201120 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
28 16 0.46
29 19 0.54
ACGTcount: A:0.33, C:0.27, G:0.08, T:0.32
Consensus pattern (29 bp):
ATACCCCTATGTATGCTAAAATGACCATT
Found at i:66201265 original size:28 final size:29
Alignment explanation
Indices: 66201224--66201286 Score: 94
Period size: 28 Copynumber: 2.2 Consensus size: 29
66201214 AGGAAGCGTC
*
66201224 CTGGTGGCTATGCCACAAATTATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTAT
66201252 CTGGTGGC-ACTGCCACAAAATATCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGTAT
66201281 CTGGTG
1 CTGGTG
66201287 ACTCTGTCAC
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
27 1 0.03
28 24 0.75
29 7 0.22
ACGTcount: A:0.22, C:0.22, G:0.24, T:0.32
Consensus pattern (29 bp):
CTGGTGGCTATGCCACAAAATATCTGTAT
Found at i:66201297 original size:29 final size:28
Alignment explanation
Indices: 66201234--66201297 Score: 83
Period size: 28 Copynumber: 2.2 Consensus size: 28
66201224 CTGGTGGCTA
* *
66201234 TGCCACAAATTATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
66201262 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
66201291 TGTCACA
1 TGCCACA
66201298 TTTTCTGTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
28 16 0.52
29 15 0.48
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:66201771 original size:19 final size:19
Alignment explanation
Indices: 66201738--66201785 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 19
66201728 TAATAAGGCC
* *
66201738 TTTAATTTA-TTTTATGGT
1 TTTATTTTACTTTTATGAT
* *
66201756 TTTGTTTTACTTTTATTAT
1 TTTATTTTACTTTTATGAT
66201775 TTTATTTTACT
1 TTTATTTTACT
66201786 ATGATGAAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
18 7 0.29
19 17 0.71
ACGTcount: A:0.19, C:0.04, G:0.06, T:0.71
Consensus pattern (19 bp):
TTTATTTTACTTTTATGAT
Found at i:66206132 original size:44 final size:43
Alignment explanation
Indices: 66206069--66206181 Score: 181
Period size: 44 Copynumber: 2.6 Consensus size: 43
66206059 GTGTCAATAC
*
66206069 CATGTCCCAGACAGGTCTTACATTGACACATGTCAAGCCGATG
1 CATGTCCCAGACAGGTCTTACACTGACACATGTCAAGCCGATG
*
66206112 TCATGTCCCAGACAGGTCTTACACTGACACATGTCGAGCCGATG
1 -CATGTCCCAGACAGGTCTTACACTGACACATGTCAAGCCGATG
*
66206156 CGATGTCCCAGATAGGTCTTACACTG
1 C-ATGTCCCAGACAGGTCTTACACTG
66206182 GCTTGCATAT
Statistics
Matches: 65, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
43 1 0.02
44 64 0.98
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (43 bp):
CATGTCCCAGACAGGTCTTACACTGACACATGTCAAGCCGATG
Found at i:66206918 original size:20 final size:20
Alignment explanation
Indices: 66206893--66206931 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
66206883 ATAATTTCAA
66206893 TTATTTCAC-ACATTTACAAC
1 TTATTTCACAAC-TTTACAAC
*
66206913 TTATTTTACAACTTTACAA
1 TTATTTCACAACTTTACAA
66206932 AATAGCCCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.36, C:0.21, G:0.00, T:0.44
Consensus pattern (20 bp):
TTATTTCACAACTTTACAAC
Found at i:66208595 original size:93 final size:93
Alignment explanation
Indices: 66208466--66208637 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
66208456 CGCCCATAAG
* *
66208466 CGAACTCGGACCCAACTCAACAAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACCCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
66208531 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* * *
66208559 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACCCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
66208624 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
66208638 TCAACCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.20
Consensus pattern (93 bp):
CGAACTCGGACCCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:66208634 original size:46 final size:46
Alignment explanation
Indices: 66208459--66208634 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
66208449 TGTAACCCGC
* * * * *
66208459 CCATAAGCGAACTCGGACCCAACTCAACAAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
66208505 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
66208555 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
66208598 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
66208635 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:66208653 original size:46 final size:44
Alignment explanation
Indices: 66208510--66208653 Score: 141
Period size: 46 Copynumber: 3.1 Consensus size: 44
66208500 CGCATCCATA
66208510 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT
* * * *
66208557 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCT
66208603 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CT
66208649 AGTGA
1 AGTGA
66208654 CATGTCACTT
Statistics
Matches: 80, Mismatches: 9, Indels: 16
0.76 0.09 0.15
Matches are distributed among these distances:
44 9 0.11
45 1 0.01
46 33 0.41
47 31 0.39
48 1 0.01
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCT
Found at i:66210819 original size:23 final size:23
Alignment explanation
Indices: 66210793--66210836 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
66210783 TTCTTTCCTA
*
66210793 TTCTAT-TTTATTTTGCTTTAAGT
1 TTCTATGTTTAGTTT-CTTTAAGT
*
66210816 TTCTTTGTTTAGTTTCTTTAA
1 TTCTATGTTTAGTTTCTTTAA
66210837 TAAGTTTATT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
23 11 0.61
24 7 0.39
ACGTcount: A:0.16, C:0.09, G:0.09, T:0.66
Consensus pattern (23 bp):
TTCTATGTTTAGTTTCTTTAAGT
Found at i:66217975 original size:48 final size:48
Alignment explanation
Indices: 66217869--66218142 Score: 255
Period size: 48 Copynumber: 5.6 Consensus size: 48
66217859 GACATGTGTT
* * ** *
66217869 AGTGTAAAACCATGTCTGGGACATGGCATCGGCACCGGTATATGCGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACA-TTGT-TATGCGAGCC
* *
66217919 AGTGTAAGACCATGTTTGGAACATGGCATCGACATTGTTATGCGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACATTGTTATGCGAGCC
* * * * *** *
66217967 AGTGTAAGACCATTTCTGGGACATGGCATTGTCCTCAATATGCGAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACATTGTTATGCGAGCC
* * * ** * *
66218015 AGTGCAAGACCATGTTTGGAACATGGCATCGACATTGTTATATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACATTGTTATGCGAGCC
* *
66218063 AGTGTAAGACAATGTCTGGGACATGGCATCGATACCGA-TGTT-TGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCG--A-C-ATTGTTATGCGAGCC
*
66218113 AGTGTAAGACTATGTCTGGGACATGGCATC
1 AGTGTAAGACCATGTCTGGGACATGGCATC
66218143 AGCATTTTAC
Statistics
Matches: 181, Mismatches: 39, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
48 109 0.60
49 2 0.01
50 64 0.35
51 5 0.03
52 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.27
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACATTGTTATGCGAGCC
Found at i:66218010 original size:96 final size:96
Alignment explanation
Indices: 66217908--66218091 Score: 289
Period size: 96 Copynumber: 1.9 Consensus size: 96
66217898 CGGCACCGGT
* *
66217908 ATATGCGAG-CTAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGTTATGCGAGCCAGTGT
1 ATATGCGAGTC-AGTGCAAGACCATGTTTGGAACATGGCATCGACATTGTTATACGAGCCAGTGT
* *
66217972 AAGACCATTTCTGGGACATGGCATTGTCCTCA
65 AAGACAATGTCTGGGACATGGCATTGTCCTCA
* * *
66218004 ATATGCGAGTCAGTGCAAGACCATGTTTGGAACATGGCATCGACATTGTTATATGTGTCAGTGTA
1 ATATGCGAGTCAGTGCAAGACCATGTTTGGAACATGGCATCGACATTGTTATACGAGCCAGTGTA
66218069 AGACAATGTCTGGGACATGGCAT
66 AGACAATGTCTGGGACATGGCAT
66218092 CGATACCGAT
Statistics
Matches: 80, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
96 79 0.99
97 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.28
Consensus pattern (96 bp):
ATATGCGAGTCAGTGCAAGACCATGTTTGGAACATGGCATCGACATTGTTATACGAGCCAGTGTA
AGACAATGTCTGGGACATGGCATTGTCCTCA
Found at i:66224460 original size:46 final size:49
Alignment explanation
Indices: 66224456--66224682 Score: 153
Period size: 48 Copynumber: 4.7 Consensus size: 49
66224446 GATATGTGTT
* *
66224456 AGTGTAAGACCATGTTTGGGACATGGCATCGGCACCGGTATATGTGAGCC
1 AGTGTAAGACCATGTTTAGGACATGGCATCGGCACCCGTATATGT-AGCC
* * * ** *
66224506 AATGTAAGACCATGTTTCGAACATGGCATCGGCA-TTGT-TATGCGAGCC
1 AGTGTAAGACCATGTTTAGGACATGGCATCGGCACCCGTATATG-TAGCC
* * * * * *
66224554 AGTGTAAGGCCAT-TCTGGGACATGGCATCGGC-CTC-AATATGCGAGCC
1 AGTGTAAGACCATGTTTAGGACATGGCATCGGCACCCGTATATG-TAGCC
* * **** *
66224601 AGTGTAAGACCTTGTTT-GGAACATGGCATCAGCATTTTTATATGTA-TC
1 AGTGTAAGACCATGTTTAGG-ACATGGCATCGGCACCCGTATATGTAGCC
* * *
66224649 AATGTAAGACCATGTCTGGGACATGGCATCGGCA
1 AGTGTAAGACCATGTTTAGGACATGGCATCGGCA
66224683 TTTTACCATT
Statistics
Matches: 143, Mismatches: 26, Indels: 18
0.76 0.14 0.10
Matches are distributed among these distances:
47 40 0.28
48 61 0.43
49 6 0.04
50 36 0.25
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.26
Consensus pattern (49 bp):
AGTGTAAGACCATGTTTAGGACATGGCATCGGCACCCGTATATGTAGCC
Found at i:66224617 original size:95 final size:97
Alignment explanation
Indices: 66224456--66224682 Score: 282
Period size: 95 Copynumber: 2.4 Consensus size: 97
66224446 GATATGTGTT
* * *
66224456 AGTGTAAGACCATGTTTGGGACATGGCATCGGCACCGGTATATGTGAGCCAATGTAAGACCATGT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACC-GAATATGCGAGCCAATGTAAGACCATGT
* *
66224521 TTCGAACATGGCATCGGCATTGTTATGCG-AGCC
65 TTCGAACATGGCATCAGCATTGTTATACGTA-CC
* * *
66224554 AGTGTAAGGCCAT-TCTGGGACATGGCATCGGC-CTC-AATATGCGAGCCAGTGTAAGACCTTGT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-CGAATATGCGAGCCAATGTAAGACCATGT
* * * *
66224616 TTGGAACATGGCATCAGCATTTTTATATGTATC
65 TTCGAACATGGCATCAGCATTGTTATACGTACC
*
66224649 AATGTAAGACCATGTCTGGGACATGGCATCGGCA
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCA
66224683 TTTTACCATT
Statistics
Matches: 111, Mismatches: 14, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
95 59 0.53
96 21 0.19
97 19 0.17
98 12 0.11
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.26
Consensus pattern (97 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGAATATGCGAGCCAATGTAAGACCATGTT
TCGAACATGGCATCAGCATTGTTATACGTACC
Found at i:66232215 original size:21 final size:19
Alignment explanation
Indices: 66232179--66232217 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 19
66232169 ACCAAAATCT
*
66232179 TTAGGAAATTTTACTAAAC
1 TTAGAAAATTTTACTAAAC
66232198 TTAGAAAACTTTTCACTAAA
1 TTAGAAAA-TTTT-ACTAAA
66232218 TAGGGGTCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 7 0.41
20 4 0.24
21 6 0.35
ACGTcount: A:0.44, C:0.13, G:0.08, T:0.36
Consensus pattern (19 bp):
TTAGAAAATTTTACTAAAC
Found at i:66232357 original size:13 final size:13
Alignment explanation
Indices: 66232341--66232366 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
66232331 GGAATGATTT
66232341 TTTGAAAATTTTG
1 TTTGAAAATTTTG
66232354 TTTGAAAATTTTG
1 TTTGAAAATTTTG
66232367 ACGTTTGGGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.15, T:0.54
Consensus pattern (13 bp):
TTTGAAAATTTTG
Found at i:66233480 original size:42 final size:42
Alignment explanation
Indices: 66233411--66233511 Score: 148
Period size: 42 Copynumber: 2.4 Consensus size: 42
66233401 ACTAAGTCTA
** * * *
66233411 CGTGTAAGACCATATCTGGGATATGGCATCGATATGAGATTT
1 CGTGTAAGACCATATCTAAGATATGGCACCAATATGAAATTT
*
66233453 CGTGTAAGACCATATCTAAGATGTGGCACCAATATGAAATTT
1 CGTGTAAGACCATATCTAAGATATGGCACCAATATGAAATTT
66233495 CGTGTAAGACCATATCT
1 CGTGTAAGACCATATCT
66233512 GGGCTATCGG
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 53 1.00
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.30
Consensus pattern (42 bp):
CGTGTAAGACCATATCTAAGATATGGCACCAATATGAAATTT
Found at i:66238651 original size:20 final size:20
Alignment explanation
Indices: 66238626--66238664 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
66238616 GTAATGCAAC
66238626 AATAACTTAGTCATGGTTTG
1 AATAACTTAGTCATGGTTTG
66238646 AATAACTTAGTCATGGTTT
1 AATAACTTAGTCATGGTTT
66238665 TACTTAATCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.31, C:0.10, G:0.18, T:0.41
Consensus pattern (20 bp):
AATAACTTAGTCATGGTTTG
Found at i:66239028 original size:21 final size:21
Alignment explanation
Indices: 66239003--66239055 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
66238993 AAATTGGCAA
*
66239003 GGGAATGGAGAATAATGAAAG
1 GGGAATGAAGAATAATGAAAG
66239024 GGGAATGAAGAATAATGAAAG
1 GGGAATGAAGAATAATGAAAG
*
66239045 GGAAATGAAGA
1 GGGAATGAAGA
66239056 GATGAGAAGA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.51, C:0.00, G:0.36, T:0.13
Consensus pattern (21 bp):
GGGAATGAAGAATAATGAAAG
Found at i:66243112 original size:25 final size:25
Alignment explanation
Indices: 66243083--66243207 Score: 67
Period size: 23 Copynumber: 5.2 Consensus size: 25
66243073 ATTCTACCTT
66243083 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
* *
66243108 AT--CACAT-TGGCCA--TTCGGCCTT-
1 ATCACACATAT-G-CATGTTC-ACATTC
*
66243130 ATCACATATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
* *
66243155 AT--CACAT-TGGCCA--TTCGGCCTT-
1 ATCACACATAT-G-CATGTTC-ACATTC
66243177 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
66243202 ATCACA
1 ATCACA
66243208 TTGGCCATTA
Statistics
Matches: 72, Mismatches: 10, Indels: 36
0.61 0.08 0.31
Matches are distributed among these distances:
22 12 0.17
23 21 0.29
24 21 0.29
25 18 0.25
ACGTcount: A:0.28, C:0.29, G:0.11, T:0.32
Consensus pattern (25 bp):
ATCACACATATGCATGTTCACATTC
Found at i:66243112 original size:47 final size:47
Alignment explanation
Indices: 66243061--66243251 Score: 292
Period size: 47 Copynumber: 4.1 Consensus size: 47
66243051 TTCCACGTTT
* **
66243061 ATCACATTAGCCATTCTACCTTATCACACATATGCATGTTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
*
66243108 ATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
66243155 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
* * * * **
66243202 ATCACATTGGCCATTAGGCCTTATCTCATATATACACATTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
66243249 ATC
1 ATC
66243252 TCATAAAATC
Statistics
Matches: 133, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 133 1.00
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.34
Consensus pattern (47 bp):
ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
Found at i:66243135 original size:22 final size:22
Alignment explanation
Indices: 66243108--66243182 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
66243098 GTTCACATTC
66243108 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
66243130 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
66243154 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
66243177 ATCACA
1 ATCACA
66243183 CATATGCATG
Statistics
Matches: 40, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 16 0.40
23 7 0.17
24 7 0.17
25 10 0.25
ACGTcount: A:0.25, C:0.29, G:0.13, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:66243177 original size:94 final size:94
Alignment explanation
Indices: 66243038--66243251 Score: 313
Period size: 94 Copynumber: 2.3 Consensus size: 94
66243028 TCGGCTTCGC
* * * *
66243038 CACATAAATACAC-TTCCACGTTTATCACATTAGCCATTCTACCTTATCACACATATGCATGTTC
1 CACATATATACACATT-CACATTCATCACATTAGCCATTCGACCTTATCACACATATGCATGTTC
*
66243102 ACATTCATCACATTGGCCATTCGGCCTTAT
65 ACATTCATCACATTGGCCATTAGGCCTTAT
* ** * *
66243132 CACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCA
1 CACATATATACACATTCACATTCATCACATTAGCCATTCGACCTTATCACACATATGCATGTTCA
66243197 CATTCATCACATTGGCCATTAGGCCTTAT
66 CATTCATCACATTGGCCATTAGGCCTTAT
*
66243226 CTCATATATACACATTCACATTCATC
1 CACATATATACACATTCACATTCATC
66243252 TCATAAAATC
Statistics
Matches: 106, Mismatches: 13, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
94 104 0.98
95 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (94 bp):
CACATATATACACATTCACATTCATCACATTAGCCATTCGACCTTATCACACATATGCATGTTCA
CATTCATCACATTGGCCATTAGGCCTTAT
Found at i:66247156 original size:40 final size:40
Alignment explanation
Indices: 66247112--66247421 Score: 478
Period size: 40 Copynumber: 7.8 Consensus size: 40
66247102 GAGTACATAT
* * *
66247112 CACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
66247152 CACCAGCACGAATGCTCTTCGGGAC-TAACCCTGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * * * *
66247191 CTCTAGCACGAATGCTCTCCGAGACTTAGCCCAGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
66247231 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
66247271 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
66247311 CACCAGCACGAATGCTCTTCGAGACTTAGCCCGGACATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
66247351 CACCAGAACGAATGCTCTTCGGGACTTAGCCCGAATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
66247391 CACCAGCACGAATGCTCTTCGGGACTTAGCC
1 CACCAGCACGAATGCTCTTCGGGACTTAGCC
66247422 TGGCTATATA
Statistics
Matches: 247, Mismatches: 22, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
39 33 0.13
40 214 0.87
ACGTcount: A:0.28, C:0.31, G:0.21, T:0.20
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
Found at i:66249049 original size:47 final size:47
Alignment explanation
Indices: 66248988--66249225 Score: 386
Period size: 47 Copynumber: 5.1 Consensus size: 47
66248978 TTCCACGTTT
* **
66248988 ATCACATTAGCCATTCTACCTTATCACACATATGCATGTTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
66249035 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
*
66249082 ATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
66249129 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
* * * * **
66249176 ATCACATTGGCCATTAGGCCTTATCTCATATATACACATTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
66249223 ATC
1 ATC
66249226 TCATAAAATC
Statistics
Matches: 180, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 180 1.00
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.33
Consensus pattern (47 bp):
ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
Found at i:66249062 original size:22 final size:22
Alignment explanation
Indices: 66249035--66249156 Score: 65
Period size: 22 Copynumber: 5.3 Consensus size: 22
66249025 GTTCACATTC
66249035 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* *
66249057 ATCACACATAT-G-CATGTTC-ACATT
1 AT--CACAT-TGGCCA--TTCGGCCTT
66249081 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * *
66249104 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
66249128 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
66249151 ATCACA
1 ATCACA
66249157 CATATGCATG
Statistics
Matches: 74, Mismatches: 10, Indels: 32
0.64 0.09 0.28
Matches are distributed among these distances:
22 22 0.30
23 18 0.24
24 18 0.24
25 16 0.22
ACGTcount: A:0.25, C:0.30, G:0.13, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:66252546 original size:24 final size:23
Alignment explanation
Indices: 66252506--66252555 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 23
66252496 AATATAAAAT
* *
66252506 ATTAATAATTCACT-AAATTGAAA
1 ATTAATAATTAAATAAAATT-AAA
66252529 ATTAATTAATTAAATAAAATTAAA
1 ATTAA-TAATTAAATAAAATTAAA
66252553 ATT
1 ATT
66252556 TAGGAGAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
23 5 0.22
24 13 0.57
25 5 0.22
ACGTcount: A:0.56, C:0.04, G:0.02, T:0.38
Consensus pattern (23 bp):
ATTAATAATTAAATAAAATTAAA
Found at i:66257001 original size:40 final size:40
Alignment explanation
Indices: 66256914--66257125 Score: 212
Period size: 40 Copynumber: 5.3 Consensus size: 40
66256904 CCTTCGGAAT
* * *
66256914 TTAA-CCGGATATAATGACTCGCTCAAATGCCTTCGGGAC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* * * * *
66256953 -GAAGCCCGGTTATAGTGACTCGCACAATTGCCTTCGGGTC
1 TTAA-CCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* ** *
66256993 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* * *
66257033 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* * * * *
66257073 TTAGCCCGGATATAATTACTAGCACAATTGCCTTCGGGAC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
*
66257113 TTAGCCCGGATAT
1 TTAACCCGGATAT
66257126 CATTCCAATG
Statistics
Matches: 144, Mismatches: 26, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
38 2 0.01
40 140 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
Found at i:66257039 original size:80 final size:80
Alignment explanation
Indices: 66256914--66257125 Score: 248
Period size: 80 Copynumber: 2.7 Consensus size: 80
66256904 CCTTCGGAAT
* * * ** * ***
66256914 TTAA-CCGGATATAATGACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTGACTCGCAC
1 TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAACAACTCGCAC
66256978 -AATTGCCTTCGGGTC
66 GAA-TGCCTTCGGGTC
* ** * *
66256993 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCAC
1 TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAACAACTCGCAC
66257058 GAATGCCTTCGGGTC
66 GAATGCCTTCGGGTC
* * *
66257073 TTAGCCCGGATATAATTACTAGCACAATTGCCTTCGGGACTTAGCCCGGATAT
1 TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
66257126 CATTCCAATG
Statistics
Matches: 110, Mismatches: 21, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
79 4 0.04
80 104 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (80 bp):
TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAACAACTCGCAC
GAATGCCTTCGGGTC
Found at i:66261948 original size:40 final size:40
Alignment explanation
Indices: 66261889--66262030 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
66261879 AAATTGAATG
* * *
66261889 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
66261929 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGCGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
66261969 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
66262009 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
66262031 GCATTTGTGC
Statistics
Matches: 85, Mismatches: 16, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 3 0.04
40 82 0.96
ACGTcount: A:0.27, C:0.25, G:0.27, T:0.21
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:66262054 original size:40 final size:39
Alignment explanation
Indices: 66261927--66262056 Score: 147
Period size: 40 Copynumber: 3.3 Consensus size: 39
66261917 ATGCTGGAAA
* * *
66261927 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGCGGC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-A-CAGC
* *
66261968 -TATATCCGGGCTAAGACCCGAAGGCATTCGTGC-GAGTC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACAG-C
*
66262006 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGC
1 -TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACA-GC
66262047 TTATATCCGG
1 TTATATCCGG
66262057 TTATATTCCG
Statistics
Matches: 75, Mismatches: 9, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
37 1 0.01
38 1 0.01
40 70 0.93
41 2 0.03
42 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACAGC
Found at i:66269997 original size:40 final size:40
Alignment explanation
Indices: 66269895--66270006 Score: 134
Period size: 40 Copynumber: 2.8 Consensus size: 40
66269885 AAATTGAATG
* * * * *
66269895 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGAAACT
* ***
66269935 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGCGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGAAACT
*
66269975 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
66270007 ACATGCTTAT
Statistics
Matches: 61, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 61 1.00
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGAAACT
Found at i:66272163 original size:40 final size:39
Alignment explanation
Indices: 66271998--66272181 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
66271988 AAATTGAATG
* * *
66271998 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
66272038 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
66272078 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
66272118 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
66272157 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
66272182 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:66272206 original size:80 final size:81
Alignment explanation
Indices: 66272038--66272226 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
66272028 GCTGGAAATT
* * * *
66272038 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
66272103 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
66272119 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
66272182 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
66272198 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
66272227 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:66280236 original size:40 final size:39
Alignment explanation
Indices: 66280071--66280254 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
66280061 GAAATTGATG
* * *
66280071 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
66280111 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
66280151 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
66280191 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
66280230 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
66280255 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:66280279 original size:80 final size:81
Alignment explanation
Indices: 66280111--66280299 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
66280101 GCTGGAAATT
* * * *
66280111 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
66280176 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
66280192 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
66280255 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
66280271 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
66280300 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:66282072 original size:20 final size:20
Alignment explanation
Indices: 66282044--66282083 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
66282034 AGCCTAACCT
*
66282044 AAATTAATAA-AATAAAATAA
1 AAATAAATAATAA-AAAATAA
66282064 AAATAAATAATAAAAAATAA
1 AAATAAATAATAAAAAATAA
66282084 TATCTTCCTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 16 0.89
21 2 0.11
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.23
Consensus pattern (20 bp):
AAATAAATAATAAAAAATAA
Found at i:66292761 original size:34 final size:34
Alignment explanation
Indices: 66292723--66292789 Score: 82
Period size: 34 Copynumber: 2.0 Consensus size: 34
66292713 ATCACATATA
* *
66292723 TCCATCGAAATTCATTATTCAAAC-GAAACTTAAC
1 TCCATCAAAATTCATCATTCAAACAG-AACTTAAC
* *
66292757 TCCATTAAAATTCATCGTTCAAACAGAACTTAA
1 TCCATCAAAATTCATCATTCAAACAGAACTTAA
66292790 TATTTTCTAG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
34 27 0.96
35 1 0.04
ACGTcount: A:0.42, C:0.22, G:0.06, T:0.30
Consensus pattern (34 bp):
TCCATCAAAATTCATCATTCAAACAGAACTTAAC
Found at i:66297680 original size:23 final size:22
Alignment explanation
Indices: 66297661--66297788 Score: 89
Period size: 23 Copynumber: 5.7 Consensus size: 22
66297651 CCACAGCTTG
66297661 TATGAGCTTACCGTTTCAGCTCT
1 TATGAGCTTACCG-TTCAGCTCT
*
66297684 TATGAGCTTATCGTTCAGCTCT
1 TATGAGCTTACCGTTCAGCTCT
** * * *
66297706 TCGGCGCTTATCGTTTCAGTTCT
1 TATGAGCTTACCG-TTCAGCTCT
* * *
66297729 TAGGGGCTTACCGTTTCAACTC-
1 TATGAGCTTACCG-TTCAGCTCT
* *
66297751 TACGGAGCTTACTGTTCAGCTC-
1 TA-TGAGCTTACCGTTCAGCTCT
*
66297773 AATTGAGCTTACCGTT
1 TA-TGAGCTTACCGTT
66297789 TATCGGCTCA
Statistics
Matches: 86, Mismatches: 17, Indels: 5
0.80 0.16 0.05
Matches are distributed among these distances:
22 40 0.47
23 46 0.53
ACGTcount: A:0.17, C:0.25, G:0.20, T:0.38
Consensus pattern (22 bp):
TATGAGCTTACCGTTCAGCTCT
Found at i:66297703 original size:22 final size:23
Alignment explanation
Indices: 66297661--66297751 Score: 94
Period size: 23 Copynumber: 4.0 Consensus size: 23
66297651 CCACAGCTTG
*
66297661 TATGAGCTTACCGTTTCAGCTCT
1 TATGAGCTTATCGTTTCAGCTCT
66297684 TATGAGCTTATCG-TTCAGCTCT
1 TATGAGCTTATCGTTTCAGCTCT
** * *
66297706 TCGGCGCTTATCGTTTCAGTTCT
1 TATGAGCTTATCGTTTCAGCTCT
* * * *
66297729 TAGGGGCTTACCGTTTCAACTCT
1 TATGAGCTTATCGTTTCAGCTCT
66297752 ACGGAGCTTA
Statistics
Matches: 57, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
22 19 0.33
23 38 0.67
ACGTcount: A:0.15, C:0.25, G:0.20, T:0.40
Consensus pattern (23 bp):
TATGAGCTTATCGTTTCAGCTCT
Found at i:66297738 original size:45 final size:46
Alignment explanation
Indices: 66297664--66297789 Score: 125
Period size: 45 Copynumber: 2.8 Consensus size: 46
66297654 CAGCTTGTAT
* * * *
66297664 GAGCTTACCGTTTCAGCTCTTATGAGCTTATCG-TTCAGCTCTTCG
1 GAGCTTACCGTTTCAGCTCTTAGGAGCTTACCGTTTCAACTCTACG
* * * *
66297709 GCGCTTATCGTTTCAGTTCTTAGGGGCTTACCGTTTCAACTCTACG
1 GAGCTTACCGTTTCAGCTCTTAGGAGCTTACCGTTTCAACTCTACG
*
66297755 GAGCTTACTG-TTCAGCTCAATT--GAGCTTACCGTTT
1 GAGCTTACCGTTTCAGCTC--TTAGGAGCTTACCGTTT
66297790 ATCGGCTCAA
Statistics
Matches: 65, Mismatches: 13, Indels: 6
0.77 0.15 0.07
Matches are distributed among these distances:
45 46 0.71
46 17 0.26
47 2 0.03
ACGTcount: A:0.17, C:0.25, G:0.21, T:0.37
Consensus pattern (46 bp):
GAGCTTACCGTTTCAGCTCTTAGGAGCTTACCGTTTCAACTCTACG
Found at i:66300164 original size:93 final size:93
Alignment explanation
Indices: 66300057--66300229 Score: 310
Period size: 93 Copynumber: 1.9 Consensus size: 93
66300047 CGCCCATAAG
* *
66300057 TGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCATCCATAAGTGAACTCGGACTCAAGTCA
1 TGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
66300122 ACGAGCTCGGATGCCTAGTTACATCTCT
66 ACGAGCTCGGATGCCTAGTTACATCTCT
*
66300150 TGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 TGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
*
66300215 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
66300230 CAAACATCCT
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (93 bp):
TGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCT
Found at i:66300225 original size:46 final size:46
Alignment explanation
Indices: 66300050--66300225 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
66300040 TGTAACCCGC
*
66300050 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
* * *
66300096 CCATAAGTGAACTCGGACTCAAGTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-ATTTGCAT
*
66300146 CTC-T---TGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
*
66300189 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
66300226 TGCCCAAACA
Statistics
Matches: 113, Mismatches: 8, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 1 0.01
43 8 0.07
44 1 0.01
46 65 0.58
47 28 0.25
49 1 0.01
50 8 0.07
51 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
Found at i:66302653 original size:15 final size:14
Alignment explanation
Indices: 66302608--66302661 Score: 54
Period size: 14 Copynumber: 3.8 Consensus size: 14
66302598 AAAAGATAAC
* *
66302608 AAGAAAACCGAATA
1 AAGAAATCCAAATA
66302622 AAGAAATCCAAATA
1 AAGAAATCCAAATA
* *
66302636 AAGAGATCCAGGATA
1 AAGAAATCCA-AATA
*
66302651 AAGAAACCCAA
1 AAGAAATCCAA
66302662 GATACGATAC
Statistics
Matches: 32, Mismatches: 7, Indels: 2
0.78 0.17 0.05
Matches are distributed among these distances:
14 21 0.66
15 11 0.34
ACGTcount: A:0.59, C:0.17, G:0.15, T:0.09
Consensus pattern (14 bp):
AAGAAATCCAAATA
Found at i:66302665 original size:15 final size:15
Alignment explanation
Indices: 66302619--66302665 Score: 60
Period size: 15 Copynumber: 3.2 Consensus size: 15
66302609 AGAAAACCGA
66302619 ATAAAGAAATCCAA-
1 ATAAAGAAATCCAAG
* *
66302633 ATAAAGAGATCCAGG
1 ATAAAGAAATCCAAG
*
66302648 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
66302663 ATA
1 ATA
66302666 CGATACTATG
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
14 12 0.44
15 15 0.56
ACGTcount: A:0.57, C:0.15, G:0.15, T:0.13
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:66305648 original size:46 final size:45
Alignment explanation
Indices: 66305581--66305754 Score: 179
Period size: 46 Copynumber: 3.8 Consensus size: 45
66305571 TGTAACCCGC
*
66305581 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGC-TTAGCAT
* * * *
66305627 CCATAAGTGAACTCGGACTCAAGTCAACGAGCTCGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCG-GGCTTAGCAT
* *** * * * *
66305672 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTTGGACATTTGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGC-TTAGCAT
*
66305719 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
66305755 ATGCCCAAAC
Statistics
Matches: 102, Mismatches: 22, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
45 6 0.06
46 89 0.87
47 7 0.07
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTAGCAT
Found at i:66305700 original size:92 final size:93
Alignment explanation
Indices: 66305589--66305759 Score: 272
Period size: 92 Copynumber: 1.8 Consensus size: 93
66305579 GCCCATAAGT
* * *
66305589 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAAGTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
66305654 CGAGCTC-GATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* * *
66305681 GAACTCGGACTCAACTCAACGAGTTTGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
66305746 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
66305760 CAAACATCCT
Statistics
Matches: 71, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
92 65 0.92
93 6 0.08
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:66309370 original size:16 final size:17
Alignment explanation
Indices: 66309336--66309379 Score: 63
Period size: 16 Copynumber: 2.6 Consensus size: 17
66309326 ACCGATAAAA
*
66309336 TATTTTCTTATTTTTTG
1 TATTTTCTTATTTTCTG
66309353 TATTTTCTT-TTTTCTG
1 TATTTTCTTATTTTCTG
*
66309369 TATTTTTTTAT
1 TATTTTCTTAT
66309380 CACTTTTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 14 0.58
17 10 0.42
ACGTcount: A:0.11, C:0.07, G:0.05, T:0.77
Consensus pattern (17 bp):
TATTTTCTTATTTTCTG
Found at i:66311132 original size:27 final size:27
Alignment explanation
Indices: 66311102--66311155 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
66311092 ATAGTTAATT
66311102 ATTA-TAAAATAATTAAATTTTACTTAA
1 ATTATTAAAAT-ATTAAATTTTACTTAA
* * *
66311129 ATTATTAACATGTTTAATTTTACTTAA
1 ATTATTAAAATATTAAATTTTACTTAA
66311156 TTTTATAATA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
27 18 0.78
28 5 0.22
ACGTcount: A:0.44, C:0.06, G:0.02, T:0.48
Consensus pattern (27 bp):
ATTATTAAAATATTAAATTTTACTTAA
Found at i:66315664 original size:40 final size:40
Alignment explanation
Indices: 66315605--66315812 Score: 220
Period size: 40 Copynumber: 5.2 Consensus size: 40
66315595 CATTGGAATG
* * *
66315605 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
**
66315645 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATT
* * * **
66315685 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
* * *
66315725 AAATCCGGGTTAAGACCCGAAGGCAATTGTGCGAGTCACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
* ** * * * *
66315765 ATAACCGGGCTTCGTCCCAAAGGCATTTGAGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
66315805 ATATCCGG
1 ATATCCGG
66315813 TTAAATTCCG
Statistics
Matches: 140, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
39 3 0.02
40 135 0.96
41 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
Found at i:66318772 original size:30 final size:30
Alignment explanation
Indices: 66318736--66318836 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 30
66318726 GACAAGATTG
* * *
66318736 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* * *
66318766 GCACTAAGTGCGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
66318794 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
66318823 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
66318837 GATTCACTAT
Statistics
Matches: 59, Mismatches: 10, Indels: 5
0.80 0.14 0.07
Matches are distributed among these distances:
28 22 0.37
29 19 0.32
30 18 0.31
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:66325087 original size:40 final size:41
Alignment explanation
Indices: 66325042--66325131 Score: 123
Period size: 40 Copynumber: 2.2 Consensus size: 41
66325032 CGGAATATAA
* *
66325042 CCGGATATAAGCATG-T-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAAGC-CGCTAGCACAAATGCCTTCGGGTCTTAAC
*
66325082 CCGGATAT-AGCCGCTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAAGCCGCTAGCACAAATGCCTTCGGGTCTTAAC
66325122 CCGGATATAA
1 CCGGATATAA
66325132 TTTCCAGCAT
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
38 1 0.02
39 4 0.09
40 38 0.86
41 1 0.02
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (41 bp):
CCGGATATAAGCCGCTAGCACAAATGCCTTCGGGTCTTAAC
Found at i:66325146 original size:40 final size:40
Alignment explanation
Indices: 66325058--66325169 Score: 134
Period size: 40 Copynumber: 2.8 Consensus size: 40
66325048 ATAAGCATGT
* * *
66325058 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCCGCTA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACCGCCA
* ***
66325098 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACCGCCA
* * *
66325138 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
66325170 CATTCAATTT
Statistics
Matches: 61, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 61 1.00
ACGTcount: A:0.22, C:0.27, G:0.23, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACCGCCA
Found at i:66333050 original size:40 final size:40
Alignment explanation
Indices: 66333005--66333171 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
66332995 CGGAATATAA
66333005 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
66333045 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
66333085 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * *
66333125 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
66333164 CCGGATAT
1 CCGGATAT
66333172 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 92 0.87
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:66333155 original size:80 final size:79
Alignment explanation
Indices: 66333005--66333171 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
66332995 CGGAATATAA
*
66333005 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATG
66333070 CCTTCGGGTCTTAGC
66 CCTTCGGG-CTTAGC
* * * ** *
66333085 CCGGATATAGCCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA
*
66333147 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
66333164 CCGGATAT
1 CCGGATAT
66333172 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:66341668 original size:40 final size:39
Alignment explanation
Indices: 66341503--66341686 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
66341493 AAATTGAATG
* * *
66341503 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
66341543 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
66341583 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
66341623 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
66341662 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
66341687 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:66341711 original size:80 final size:81
Alignment explanation
Indices: 66341543--66341731 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
66341533 GCTGGAAATT
* * * *
66341543 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
66341608 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
66341624 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
66341687 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
66341703 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
66341732 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:66349270 original size:39 final size:39
Alignment explanation
Indices: 66349227--66349370 Score: 216
Period size: 39 Copynumber: 3.7 Consensus size: 39
66349217 GAATGTTCGA
*
66349227 GTGATATCCGGGCTAAGCCCAAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* * * *
66349266 GTGATACCCGGGCTAAGCCCGAAGGCAATTGTACGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
66349305 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
66349344 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
66349371 CTTTGTGCGG
Statistics
Matches: 92, Mismatches: 12, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 83 0.90
40 9 0.10
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.22
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:66365777 original size:22 final size:22
Alignment explanation
Indices: 66365752--66365800 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
66365742 TCTTGTATTT
* * *
66365752 AAATCTCTTTTGCTCTTTCATG
1 AAATCTCATTTACTCTTTAATG
66365774 AAATCTCATTTACTCTTTAATG
1 AAATCTCATTTACTCTTTAATG
66365796 AAATC
1 AAATC
66365801 ACTAATTTCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.06, T:0.45
Consensus pattern (22 bp):
AAATCTCATTTACTCTTTAATG
Found at i:66369705 original size:25 final size:24
Alignment explanation
Indices: 66369633--66369880 Score: 97
Period size: 25 Copynumber: 10.0 Consensus size: 24
66369623 TTGATAACAT
* *
66369633 GCCACAAAGGCTTTCCAGAGGATTC
1 GCCAAAAATGCTTT-CAGAGGATTC
* * * *
66369658 ACC-ATAAGGCTTTCCAGAAGATTC
1 GCCAAAAATGCTTT-CAGAGGATTC
66369682 GCCAAAAATGCATTTCAGAGGATTC
1 GCCAAAAATGC-TTTCAGAGGATTC
* * * **
66369707 GCCACAAAGGATTTCTAGAATATTC
1 GCCAAAAATGCTTTC-AGAGGATTC
* * * *
66369732 ACC-ATAAGGCTTTCCAGAAGATTC
1 GCCAAAAATGCTTT-CAGAGGATTC
* *
66369756 GCCAAAAATACTTTTCAAAGGATTC
1 GCCAAAAATGC-TTTCAGAGGATTC
* * * * *
66369781 ACCATAAAGGATTTCCAAAGGATTC
1 GCCAAAAATGCTTT-CAGAGGATTC
* * * *
66369806 TCCACAAAGGCTTTCGAAAGGATTC
1 GCCAAAAATGCTTTC-AGAGGATTC
* *
66369831 GCC-ATAATGGCTTTCCAGAGAATTC
1 GCCAAAAAT-GCTTT-CAGAGGATTC
* * *
66369856 GCCACAAAGGCTTTCTAGAGAATTC
1 GCCAAAAATGCTTTC-AGAGGATTC
66369881 TGTGTTTACT
Statistics
Matches: 170, Mismatches: 41, Indels: 24
0.72 0.17 0.10
Matches are distributed among these distances:
24 48 0.28
25 113 0.66
26 9 0.05
ACGTcount: A:0.34, C:0.23, G:0.18, T:0.25
Consensus pattern (24 bp):
GCCAAAAATGCTTTCAGAGGATTC
Found at i:66369732 original size:74 final size:73
Alignment explanation
Indices: 66369633--66369870 Score: 266
Period size: 74 Copynumber: 3.2 Consensus size: 73
66369623 TTGATAACAT
* *
66369633 GCCACAAAGGCTTTCCAGAGGATTCACCATAAGGCTTTCCAGAAGATTCGCCAAAAATGCATTTC
1 GCCACAAAGGATTTCCAGAAGATTCACCATAAGGCTTTCCAGAAGATTCGCCAAAAATGC-TTTC
66369698 AGAGGATTC
65 AGAGGATTC
* * *
66369707 GCCACAAAGGATTTCTAGAATATTCACCATAAGGCTTTCCAGAAGATTCGCCAAAAATACTTTTC
1 GCCACAAAGGATTTCCAGAAGATTCACCATAAGGCTTTCCAGAAGATTCGCCAAAAATGC-TTTC
*
66369772 AAAGGATTC
65 AGAGGATTC
* * * * * *
66369781 ACCATAAAGGATTTCCA-AAGGATTCTCCACAAAGGCTTTCGA-AAGGATTCGCC-ATAATGGCT
1 GCCACAAAGGATTTCCAGAA-GATTCACCA-TAAGGCTTTCCAGAA-GATTCGCCAAAAAT-GCT
*
66369843 TTCCAGAGAATTC
62 TT-CAGAGGATTC
*
66369856 GCCACAAAGGCTTTC
1 GCCACAAAGGATTTC
66369871 TAGAGAATTC
Statistics
Matches: 138, Mismatches: 21, Indels: 9
0.82 0.12 0.05
Matches are distributed among these distances:
73 2 0.01
74 97 0.70
75 39 0.28
ACGTcount: A:0.34, C:0.24, G:0.18, T:0.25
Consensus pattern (73 bp):
GCCACAAAGGATTTCCAGAAGATTCACCATAAGGCTTTCCAGAAGATTCGCCAAAAATGCTTTCA
GAGGATTC
Found at i:66369815 original size:14 final size:14
Alignment explanation
Indices: 66369771--66369815 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
66369761 AAATACTTTT
*
66369771 CAAAGGATTCACCA
1 CAAAGGATTCTCCA
*
66369785 TAAAGGATT-T-C-
1 CAAAGGATTCTCCA
66369796 CAAAGGATTCTCCA
1 CAAAGGATTCTCCA
66369810 CAAAGG
1 CAAAGG
66369816 CTTTCGAAAG
Statistics
Matches: 25, Mismatches: 3, Indels: 6
0.74 0.09 0.18
Matches are distributed among these distances:
11 8 0.32
12 2 0.08
13 1 0.04
14 14 0.56
ACGTcount: A:0.40, C:0.22, G:0.18, T:0.20
Consensus pattern (14 bp):
CAAAGGATTCTCCA
Found at i:66369826 original size:50 final size:49
Alignment explanation
Indices: 66369638--66369870 Score: 215
Period size: 50 Copynumber: 4.7 Consensus size: 49
66369628 AACATGCCAC
* * * *
66369638 AAAGGCTTTCCAGAGGATTCACCA-TAAGGCTTTCCAGAAGATTCGCCAA
1 AAAGGCTTTCCAGAGGATTCGCCACAAAGGCTTT-CAGAAGATTCACCAT
* * *
66369687 AAATGCATTT-CAGAGGATTCGCCACAAAGGATTTCTAGAATATTCACCAT
1 AAAGGC-TTTCCAGAGGATTCGCCACAAAGGCTTTC-AGAAGATTCACCAT
* * **
66369737 -AAGGCTTTCCAGAAGATTCGCCAAAAATACTTTTCA-AAGGATTCACCAT
1 AAAGGCTTTCCAGAGGATTCGCCACAAAGGC-TTTCAGAA-GATTCACCAT
* * * *
66369786 AAAGGATTTCCAAAGGATTCTCCACAAAGGCTTTC-GAAAGGATTCGCCAT
1 AAAGGCTTTCCAGAGGATTCGCCACAAAGGCTTTCAG-AA-GATTCACCAT
* *
66369836 AATGGCTTTCCAGAGAATTCGCCACAAAGGCTTTC
1 AAAGGCTTTCCAGAGGATTCGCCACAAAGGCTTTC
66369871 TAGAGAATTC
Statistics
Matches: 148, Mismatches: 27, Indels: 17
0.77 0.14 0.09
Matches are distributed among these distances:
48 5 0.03
49 53 0.36
50 90 0.61
ACGTcount: A:0.34, C:0.23, G:0.18, T:0.25
Consensus pattern (49 bp):
AAAGGCTTTCCAGAGGATTCGCCACAAAGGCTTTCAGAAGATTCACCAT
Found at i:66372709 original size:22 final size:22
Alignment explanation
Indices: 66372665--66372709 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
66372655 ATCCCACATG
*
66372665 GTGTGTAGGGTTGGATGGAGTA
1 GTGTGTAGGGCTGGATGGAGTA
*
66372687 GTGTGTAGAGGCTGGCTGG-GTA
1 GTGTGTAG-GGCTGGATGGAGTA
66372709 G
1 G
66372710 GATTCCTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 12 0.60
23 8 0.40
ACGTcount: A:0.16, C:0.04, G:0.51, T:0.29
Consensus pattern (22 bp):
GTGTGTAGGGCTGGATGGAGTA
Found at i:66374168 original size:16 final size:16
Alignment explanation
Indices: 66374147--66374179 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
66374137 ATGTAATGCC
66374147 CCAAAAATCCCGAAAT
1 CCAAAAATCCCGAAAT
*
66374163 CCAAAAATCCTGAAAT
1 CCAAAAATCCCGAAAT
66374179 C
1 C
66374180 TTGAATTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.48, C:0.30, G:0.06, T:0.15
Consensus pattern (16 bp):
CCAAAAATCCCGAAAT
Found at i:66375562 original size:19 final size:18
Alignment explanation
Indices: 66375540--66375579 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 18
66375530 TTGAGAATTA
66375540 GCTAAATGGGCCGGAATGG
1 GCTAAATGGGCC-GAATGG
*
66375559 GCTAAATGGGCCTAATGG
1 GCTAAATGGGCCGAATGG
66375577 GCT
1 GCT
66375580 GTTGGACCCA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 8 0.40
19 12 0.60
ACGTcount: A:0.25, C:0.17, G:0.38, T:0.20
Consensus pattern (18 bp):
GCTAAATGGGCCGAATGG
Found at i:66375693 original size:29 final size:29
Alignment explanation
Indices: 66375648--66375766 Score: 136
Period size: 29 Copynumber: 4.2 Consensus size: 29
66375638 GTGAGCATGA
*
66375648 ATAT-AATATGATTTGGGCCTAATGGGCC
1 ATATGAATATGAATTGGGCCTAATGGGCC
* * *
66375676 ATATGAATGTGAATTGGGCTTAGTGGGCC
1 ATATGAATATGAATTGGGCCTAATGGGCC
*
66375705 ATAAGAATATGAATTGGGCC-AGATGGGCC
1 ATATGAATATGAATTGGGCCTA-ATGGGCC
* * *
66375734 ATTTGAATAAG-ATTGGGCCTAGTGGGCC
1 ATATGAATATGAATTGGGCCTAATGGGCC
66375762 ATATG
1 ATATG
66375767 CATGTATGTA
Statistics
Matches: 75, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
28 23 0.31
29 52 0.69
ACGTcount: A:0.29, C:0.13, G:0.30, T:0.29
Consensus pattern (29 bp):
ATATGAATATGAATTGGGCCTAATGGGCC
Found at i:66375715 original size:58 final size:57
Alignment explanation
Indices: 66375652--66375764 Score: 156
Period size: 58 Copynumber: 2.0 Consensus size: 57
66375642 GCATGAATAT
* ** *
66375652 AATATGATTTGGGCCTA-ATGGGCCATATGAATGTGAATTGGGCTTAGTGGGCCATAAG
1 AATATGAATTGGGCC-AGATGGGCCATATGAATAAG-ATTGGGCCTAGTGGGCCATAAG
*
66375710 AATATGAATTGGGCCAGATGGGCCATTTGAATAAGATTGGGCCTAGTGGGCCATA
1 AATATGAATTGGGCCAGATGGGCCATATGAATAAGATTGGGCCTAGTGGGCCATA
66375765 TGCATGTATG
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
57 20 0.41
58 29 0.59
ACGTcount: A:0.28, C:0.13, G:0.31, T:0.27
Consensus pattern (57 bp):
AATATGAATTGGGCCAGATGGGCCATATGAATAAGATTGGGCCTAGTGGGCCATAAG
Found at i:66378267 original size:44 final size:42
Alignment explanation
Indices: 66378120--66378284 Score: 136
Period size: 43 Copynumber: 3.9 Consensus size: 42
66378110 TAGAAAGCTC
* * * * * *
66378120 ATACAATGCCAACGTCCCAGACGTGGCCTTGCATGTAATCAA
1 ATACGATGCCAACGTCCCAGACATGGTCTTACACGAAATCAA
* * * * * *
66378162 ATATCGATTCC-TCTATCCCAGATAGGGTCTTACATGAAATCAA
1 ATA-CGATGCCAAC-GTCCCAGACATGGTCTTACACGAAATCAA
* *
66378205 ATACGATGCCGATGTCCCAGACATGGTCTTACACGTAAATCATA
1 ATACGATGCCAACGTCCCAGACATGGTCTTACACG-AAATCA-A
*
66378249 AGT-CGATGCCAACGTCCCAGACGTGGTCTTACACGA
1 A-TACGATGCCAACGTCCCAGACATGGTCTTACACGA
66378285 GAACACATAT
Statistics
Matches: 97, Mismatches: 20, Indels: 11
0.76 0.16 0.09
Matches are distributed among these distances:
42 28 0.29
43 37 0.38
44 31 0.32
45 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (42 bp):
ATACGATGCCAACGTCCCAGACATGGTCTTACACGAAATCAA
Found at i:66384176 original size:42 final size:43
Alignment explanation
Indices: 66384069--66384195 Score: 132
Period size: 42 Copynumber: 3.0 Consensus size: 43
66384059 AGCTCATAAA
* *
66384069 ATGCCAATGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACACGAAATCAAATATCG
* * ** *
66384112 TTGCCACTGTCCCA-ACAAGGTCTTACACGAAATCATATA-CG
1 ATGCCAATGTCCCAGACGTGGTCTTACACGAAATCAAATATCG
* ** * *
66384153 ATGCCAATGTCCCAGATGTGGTCTTGTACGAAAACACATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACACGAAATCAAATATCG
66384196 GATCCTATGT
Statistics
Matches: 66, Mismatches: 16, Indels: 4
0.77 0.19 0.05
Matches are distributed among these distances:
41 14 0.21
42 38 0.58
43 14 0.21
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACGTGGTCTTACACGAAATCAAATATCG
Found at i:66389619 original size:39 final size:40
Alignment explanation
Indices: 66389575--66389740 Score: 174
Period size: 40 Copynumber: 4.2 Consensus size: 40
66389565 CGGAATATAA
*
66389575 CCGGATATAATCAGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
66389614 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
66389654 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
66389694 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
66389733 CCGGATAT
1 CCGGATAT
66389741 CATTCAATTT
Statistics
Matches: 104, Mismatches: 22, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
39 25 0.24
40 79 0.76
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:66390583 original size:17 final size:19
Alignment explanation
Indices: 66390560--66390605 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
66390550 AAGAAGCATG
66390560 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
66390578 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
66390596 AATCATGCTC
1 AATCATGCTC
66390606 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Done.