Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 213 of 318
Found at i:67032608 original size:58 final size:58
Alignment explanation
Indices: 67032517--67032647 Score: 174
Period size: 58 Copynumber: 2.2 Consensus size: 58
67032507 GACAAGATTG
* * * * * *
67032517 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAATATATA
*
67032575 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTG-AAATATATA
67032634 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
67032648 GATTCACTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
57 2 0.03
58 41 0.64
59 21 0.33
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATATATA
Found at i:67040334 original size:30 final size:30
Alignment explanation
Indices: 67040298--67040428 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
67040288 GACAAGATTG
* * * * *
67040298 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
67040328 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
67040356 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
67040386 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
67040415 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
67040429 GATTCACTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 20 0.22
30 46 0.50
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:67040389 original size:58 final size:58
Alignment explanation
Indices: 67040298--67040428 Score: 174
Period size: 58 Copynumber: 2.2 Consensus size: 58
67040288 GACAAGATTG
* * * * * *
67040298 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAATATATA
*
67040356 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTG-AAATATATA
67040415 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
67040429 GATTCACTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
57 2 0.03
58 41 0.64
59 21 0.33
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATATATA
Found at i:67049219 original size:5 final size:5
Alignment explanation
Indices: 67049209--67049242 Score: 68
Period size: 5 Copynumber: 6.8 Consensus size: 5
67049199 AAACATACAA
67049209 TCATG TCATG TCATG TCATG TCATG TCATG TCAT
1 TCATG TCATG TCATG TCATG TCATG TCATG TCAT
67049243 ATACGTTTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.21, C:0.21, G:0.18, T:0.41
Consensus pattern (5 bp):
TCATG
Found at i:67049389 original size:27 final size:27
Alignment explanation
Indices: 67049359--67049417 Score: 75
Period size: 26 Copynumber: 2.2 Consensus size: 27
67049349 GGCATTTCAG
* *
67049359 TCATTTTACCACATAGGGGCAAAACAA
1 TCATTTTACCACATAAGGGAAAAACAA
* *
67049386 TCA-TTTACCACATAAGGGAAAAATAG
1 TCATTTTACCACATAAGGGAAAAACAA
67049412 TCATTT
1 TCATTT
67049418 CATCAAATTA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 22 0.81
27 5 0.19
ACGTcount: A:0.41, C:0.19, G:0.14, T:0.27
Consensus pattern (27 bp):
TCATTTTACCACATAAGGGAAAAACAA
Found at i:67051351 original size:18 final size:18
Alignment explanation
Indices: 67051328--67051364 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
67051318 CTTTTCTTGA
67051328 TCTAAATGTAATCAAAAC
1 TCTAAATGTAATCAAAAC
67051346 TCTAAATGTAATCAAAAC
1 TCTAAATGTAATCAAAAC
67051364 T
1 T
67051365 AAGTTATTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.49, C:0.16, G:0.05, T:0.30
Consensus pattern (18 bp):
TCTAAATGTAATCAAAAC
Found at i:67060790 original size:16 final size:16
Alignment explanation
Indices: 67060771--67060809 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
67060761 GGCAAATCTC
*
67060771 GAAATGCCAAAATGCT
1 GAAAAGCCAAAATGCT
*
67060787 GAAAAGCCGAAATGCT
1 GAAAAGCCAAAATGCT
67060803 GAAAAGC
1 GAAAAGC
67060810 TGAAAGTTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.46, C:0.18, G:0.23, T:0.13
Consensus pattern (16 bp):
GAAAAGCCAAAATGCT
Found at i:67060814 original size:16 final size:16
Alignment explanation
Indices: 67060780--67060814 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
67060770 CGAAATGCCA
67060780 AAATGCTGAAAAGCCG
1 AAATGCTGAAAAGCCG
*
67060796 AAATGCTGAAAAGCTG
1 AAATGCTGAAAAGCCG
67060812 AAA
1 AAA
67060815 GTTTGGCTAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.49, C:0.14, G:0.23, T:0.14
Consensus pattern (16 bp):
AAATGCTGAAAAGCCG
Found at i:67061070 original size:28 final size:29
Alignment explanation
Indices: 67061030--67061141 Score: 122
Period size: 28 Copynumber: 4.0 Consensus size: 29
67061020 CATGACTGTA
*
67061030 AATGTGATTTGGGCCTAGT-GGCCATATG
1 AATGTGATTTGGGCCTAATAGGCCATATG
* *
67061058 AATGTGATTTGGGCCTAATAGGCCACATA
1 AATGTGATTTGGGCCTAATAGGCCATATG
* *
67061087 AATGTGA-ATGGGCCTAATGGGCCATATG
1 AATGTGATTTGGGCCTAATAGGCCATATG
* * * *
67061115 AAAGAGATTT-GGCCTAGTAGACCATAT
1 AATGTGATTTGGGCCTAATAGGCCATAT
67061142 ATATACAGGT
Statistics
Matches: 69, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
28 54 0.78
29 15 0.22
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.28
Consensus pattern (29 bp):
AATGTGATTTGGGCCTAATAGGCCATATG
Found at i:67063090 original size:21 final size:21
Alignment explanation
Indices: 67063064--67063105 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
67063054 ATATTGGTTG
* * *
67063064 TTGTGTTACAACATGGGGAGT
1 TTGTGTCACAAAATAGGGAGT
67063085 TTGTGTCACAAAATAGGGAGT
1 TTGTGTCACAAAATAGGGAGT
67063106 AGATCACAAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.10, G:0.31, T:0.31
Consensus pattern (21 bp):
TTGTGTCACAAAATAGGGAGT
Found at i:67065523 original size:23 final size:23
Alignment explanation
Indices: 67065493--67065538 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
67065483 TAATTTGGAA
*
67065493 TACATATAGATCAAGAAATAAAG
1 TACATATAGATCAAGAAAGAAAG
67065516 TACATATAGATCAAGAAAGAAAG
1 TACATATAGATCAAGAAAGAAAG
67065539 AACTCGGATT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.57, C:0.09, G:0.15, T:0.20
Consensus pattern (23 bp):
TACATATAGATCAAGAAAGAAAG
Found at i:67085578 original size:150 final size:150
Alignment explanation
Indices: 67085307--67085609 Score: 579
Period size: 150 Copynumber: 2.0 Consensus size: 150
67085297 ATGTGAACAA
67085307 GCCGTGTGCCTTACACAGATCCAGACACGCCCGTGTCTCTAGCCATGTGAAAACAGGGCATACAT
1 GCCGTGTGCCTTACACAGATCCAGACACGCCCGTGTCTCTAGCCATGTGAAAACAGGGCATACAT
*
67085372 ACTGGCTTAGGTTACACGGCCAACTACACGACCGTGTGTCTAGCCCGTGTGCCCTTTGAAGTGGC
66 ACTGGCTTAGGTTACACGGCCAACTACACGACCATGTGTCTAGCCCGTGTGCCCTTTGAAGTGGC
67085437 CACACACGCCCGTGTGCTAG
131 CACACACGCCCGTGTGCTAG
*
67085457 GCCGTGTGCCTTACACAGATCCAGACACGCCCGTGTCTCTAGCCGTGTGAAAACAGGGCATACAT
1 GCCGTGTGCCTTACACAGATCCAGACACGCCCGTGTCTCTAGCCATGTGAAAACAGGGCATACAT
67085522 ACTGGCTTAGGTTACACGGCCAACTACACGACCATGTGTCTAGCCCGTGTGCCCTTTGAAGTGGC
66 ACTGGCTTAGGTTACACGGCCAACTACACGACCATGTGTCTAGCCCGTGTGCCCTTTGAAGTGGC
*
67085587 CACACACGCCTGTGTGCTAG
131 CACACACGCCCGTGTGCTAG
67085607 GCC
1 GCC
67085610 TTGCCAAACC
Statistics
Matches: 150, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
150 150 1.00
ACGTcount: A:0.22, C:0.31, G:0.25, T:0.21
Consensus pattern (150 bp):
GCCGTGTGCCTTACACAGATCCAGACACGCCCGTGTCTCTAGCCATGTGAAAACAGGGCATACAT
ACTGGCTTAGGTTACACGGCCAACTACACGACCATGTGTCTAGCCCGTGTGCCCTTTGAAGTGGC
CACACACGCCCGTGTGCTAG
Found at i:67086890 original size:15 final size:16
Alignment explanation
Indices: 67086870--67086899 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
67086860 AAGGACATAT
67086870 AATCATAA-CTTACTC
1 AATCATAACCTTACTC
67086885 AATCATAACCTTACT
1 AATCATAACCTTACT
67086900 GAGGGTTCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.40, C:0.27, G:0.00, T:0.33
Consensus pattern (16 bp):
AATCATAACCTTACTC
Found at i:67087194 original size:42 final size:42
Alignment explanation
Indices: 67087071--67087226 Score: 186
Period size: 42 Copynumber: 3.7 Consensus size: 42
67087061 TACCATACTA
* * * *
67087071 ATGCCATATCCCAGATATGGTCTTACATGGGACTCTCATATCA
1 ATGCCATATCCCAGATATGGTCTTACA-CGAAATCTCATATCG
* * * *
67087114 ATGCCAATAGCCCAGCTATGGTCTTACAAGAAAACTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGAAATCTCATATCG
* * * *
67087157 ATGCCATATCCTAGATATGGTCTTACACGTAGTCTCATATTG
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
67087199 ATGCCATATCCCAGATATGGTCTTACAC
1 ATGCCATATCCCAGATATGGTCTTACAC
67087227 AGTCTTAGTA
Statistics
Matches: 96, Mismatches: 16, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
42 56 0.58
43 20 0.21
44 20 0.21
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
Found at i:67091423 original size:25 final size:24
Alignment explanation
Indices: 67091395--67091449 Score: 83
Period size: 25 Copynumber: 2.2 Consensus size: 24
67091385 ATGGTTAGTT
*
67091395 TAATTTGGAAGTATGAAATATGGTA
1 TAATTT-GAACTATGAAATATGGTA
67091420 TAATCTTGAACTATGAAATATGGTA
1 TAAT-TTGAACTATGAAATATGGTA
67091445 TAATT
1 TAATT
67091450 CGGGTGGTGG
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
24 1 0.04
25 25 0.89
26 2 0.07
ACGTcount: A:0.40, C:0.04, G:0.18, T:0.38
Consensus pattern (24 bp):
TAATTTGAACTATGAAATATGGTA
Found at i:67099858 original size:20 final size:19
Alignment explanation
Indices: 67099829--67099873 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
67099819 GAGAAATTCT
* *
67099829 TTTTATTGTTTTAATATTA
1 TTTTATTGTTATAATATGA
*
67099848 TTTTATGTGTTATAGTATGA
1 TTTTAT-TGTTATAATATGA
67099868 TTTTAT
1 TTTTAT
67099874 AAGTGCATGA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 6 0.27
20 16 0.73
ACGTcount: A:0.24, C:0.00, G:0.11, T:0.64
Consensus pattern (19 bp):
TTTTATTGTTATAATATGA
Found at i:67106310 original size:5 final size:5
Alignment explanation
Indices: 67106296--67106330 Score: 61
Period size: 5 Copynumber: 6.8 Consensus size: 5
67106286 CTGTGTGTTT
67106296 TTTTA TTTTTA TTTTA TTTTA TTTTA TTTTA TTTT
1 TTTTA -TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
67106331 TCACAAATTG
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 24 0.83
6 5 0.17
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (5 bp):
TTTTA
Found at i:67114769 original size:49 final size:49
Alignment explanation
Indices: 67114705--67114919 Score: 412
Period size: 49 Copynumber: 4.4 Consensus size: 49
67114695 TTCATATATG
67114705 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
67114754 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
67114803 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
67114852 TGTGATAAGGCCCAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
67114901 TGTGATAAGGCCTAATGGC
1 TGTGATAAGGCCTAATGGC
67114920 TAATGCAAGA
Statistics
Matches: 162, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 162 1.00
ACGTcount: A:0.29, C:0.09, G:0.32, T:0.30
Consensus pattern (49 bp):
TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
Found at i:67115071 original size:37 final size:37
Alignment explanation
Indices: 67115021--67115142 Score: 226
Period size: 37 Copynumber: 3.3 Consensus size: 37
67115011 GGAATATGTT
*
67115021 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
67115058 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
67115095 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
67115132 CCGGGTAAGAC
1 CCGGGTAAGAC
67115143 TTCTTTTATA
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 83 1.00
ACGTcount: A:0.25, C:0.20, G:0.34, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:67118789 original size:29 final size:29
Alignment explanation
Indices: 67118756--67118886 Score: 163
Period size: 29 Copynumber: 4.5 Consensus size: 29
67118746 TGACGAGATC
*
67118756 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
* *
67118785 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
*
67118814 GGCACTAAGTGTGCATGCTGGAAAAATAT
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
* * ** *
67118843 GACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
**
67118872 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
67118887 AGCTCGGAGG
Statistics
Matches: 90, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 90 1.00
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAAAATAT
Found at i:67130583 original size:29 final size:29
Alignment explanation
Indices: 67130550--67130680 Score: 163
Period size: 29 Copynumber: 4.5 Consensus size: 29
67130540 TGACGAGATC
*
67130550 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
* *
67130579 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
*
67130608 GGCACTAAGTGTGCATGCTGGAAAAATAT
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
* * ** *
67130637 GACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
**
67130666 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
67130681 AGCTCGGAGG
Statistics
Matches: 90, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 90 1.00
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAAAATAT
Found at i:67138685 original size:29 final size:29
Alignment explanation
Indices: 67138652--67138773 Score: 172
Period size: 29 Copynumber: 4.2 Consensus size: 29
67138642 TGACGAGATC
* *
67138652 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCATGCTGGAAAAATAT
* *
67138681 GGCACTAAGTGTGCATGCTGGAAATATAA
1 GGCACTAAGTGTGCATGCTGGAAAAATAT
67138710 GGCACTAAGTGTGCATGCTGGAAAAATAT
1 GGCACTAAGTGTGCATGCTGGAAAAATAT
* * * *
67138739 GACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCATGCTGGAAAAATAT
67138768 GGCACT
1 GGCACT
67138774 GGGTGTGCGA
Statistics
Matches: 84, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 84 1.00
ACGTcount: A:0.33, C:0.16, G:0.28, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCATGCTGGAAAAATAT
Found at i:67149368 original size:10 final size:10
Alignment explanation
Indices: 67149353--67149377 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
67149343 GTGTAGTGAT
67149353 GATCCTCGAC
1 GATCCTCGAC
67149363 GATCCTCGAC
1 GATCCTCGAC
67149373 GATCC
1 GATCC
67149378 CCAAGATTCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.20, C:0.40, G:0.20, T:0.20
Consensus pattern (10 bp):
GATCCTCGAC
Found at i:67149815 original size:43 final size:43
Alignment explanation
Indices: 67149732--67149894 Score: 154
Period size: 43 Copynumber: 3.8 Consensus size: 43
67149722 CGAAAAACTC
* * * ** *
67149732 ATACAATGCCAACGTCCTAGACGTGGTCTTACGTGT-AATCAG
1 ATACAATGCCAATGTCCCAGACATGGTCTTACACGTAAATCAA
*
67149774 ATACCAATGCCACTGTCCCAGACA-GGTTCTTACACG-AAATCAA
1 ATA-CAATGCCAATGTCCCAGACATGG-TCTTACACGTAAATCAA
**
67149817 ATATGATGCCAATGTCCCAGACATGGTCTTACACGTAAATCTCAA
1 ATACAATGCCAATGTCCCAGACATGGTCTTACACGTAAA--TCAA
* * *
67149862 AT-CTATGCCAACGTCCCAGACGTGGTCTTACAC
1 ATACAATGCCAATGTCCCAGACATGGTCTTACAC
67149895 AAAATGACAT
Statistics
Matches: 100, Mismatches: 14, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
42 31 0.31
43 36 0.36
44 27 0.27
45 6 0.06
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.25
Consensus pattern (43 bp):
ATACAATGCCAATGTCCCAGACATGGTCTTACACGTAAATCAA
Found at i:67149833 original size:42 final size:40
Alignment explanation
Indices: 67149780--67149899 Score: 132
Period size: 42 Copynumber: 2.8 Consensus size: 40
67149770 TCAGATACCA
*
67149780 ATGCCACTGTCCCAGACAGGTTCTTACACGAAATCAAATAT
1 ATGCCAATGTCCCAGACAGG-TCTTACACGAAATCAAATAT
*
67149821 GATGCCAATGTCCCAGACATGGTCTTACACGTAAATCTCAAATCT
1 -ATGCCAATGTCCCAGACA-GGTCTTACACG-AAA--TCAAATAT
* * *
67149866 ATGCCAACGTCCCAGACGTGGTCTTACACAAAAT
1 ATGCCAATGTCCCAGAC-AGGTCTTACACGAAAT
67149900 GACATATTGA
Statistics
Matches: 68, Mismatches: 5, Indels: 11
0.81 0.06 0.13
Matches are distributed among these distances:
41 1 0.01
42 26 0.38
43 8 0.12
44 26 0.38
45 7 0.10
ACGTcount: A:0.33, C:0.28, G:0.16, T:0.24
Consensus pattern (40 bp):
ATGCCAATGTCCCAGACAGGTCTTACACGAAATCAAATAT
Found at i:67157410 original size:86 final size:85
Alignment explanation
Indices: 67157252--67157418 Score: 187
Period size: 86 Copynumber: 2.0 Consensus size: 85
67157242 GGAAAGCTCG
** *
67157252 TACAATGCCAACATCCCAGACATGGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAAACA
1 TACAATGCCAACATCCCAGACATGGTCCAACACGTAATCAAATATCGATGCCACTGTCCCAAACA
* *
67157317 GATTCTTACACGAAATCCAA
66 GAGTCTTACACAAAATCCAA
** * * *
67157337 TACAATGCCAATGTCCTAGACATGGTCCAACACGTAAATCTCAA-ATCGATGCCAAC-GTCCCAG
1 TACAATGCCAACATCCCAGACATGGTCCAACACGT-AATC-AAATATCGATGCC-ACTGTCCCAA
67157400 ACATG-GTCTTACACAAAAT
63 ACA-GAGTCTTACACAAAAT
67157419 GACATATCAG
Statistics
Matches: 68, Mismatches: 10, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
85 29 0.43
86 34 0.50
87 5 0.07
ACGTcount: A:0.36, C:0.28, G:0.13, T:0.23
Consensus pattern (85 bp):
TACAATGCCAACATCCCAGACATGGTCCAACACGTAATCAAATATCGATGCCACTGTCCCAAACA
GAGTCTTACACAAAATCCAA
Found at i:67160666 original size:39 final size:39
Alignment explanation
Indices: 67160622--67160806 Score: 262
Period size: 39 Copynumber: 4.7 Consensus size: 39
67160612 GGGCTATTAC
*
67160622 ACGAGCATTATCCACTGATTATACTGAATGTTTGCTCAA
1 ACGAGCATTATCCACTGATTATACTGAATGCTTGCTCAA
* * *
67160661 ACGAGCATCATTCATTGATTATACTGAATGCTTGCTCAA
1 ACGAGCATTATCCACTGATTATACTGAATGCTTGCTCAA
*
67160700 ACGAGCATTATCCACTGATTATACTGAATGCTTTCTCAA
1 ACGAGCATTATCCACTGATTATACTGAATGCTTGCTCAA
* * * * * *
67160739 ATGACCATTATCTATTAATTACACTGAATGCTTGCTCAA
1 ACGAGCATTATCCACTGATTATACTGAATGCTTGCTCAA
*
67160778 CCGAGCATTATCCACTGATTATACTGAAT
1 ACGAGCATTATCCACTGATTATACTGAAT
67160807 AAGATTTTCT
Statistics
Matches: 124, Mismatches: 22, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
39 124 1.00
ACGTcount: A:0.31, C:0.22, G:0.14, T:0.34
Consensus pattern (39 bp):
ACGAGCATTATCCACTGATTATACTGAATGCTTGCTCAA
Found at i:67165088 original size:28 final size:28
Alignment explanation
Indices: 67165055--67165110 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
67165045 ATTAGATAAG
67165055 TTAATTTTGATTACATTTAGATCAAGAA
1 TTAATTTTGATTACATTTAGATCAAGAA
67165083 TTAATTTTGATTACATTTAGATCAAGAA
1 TTAATTTTGATTACATTTAGATCAAGAA
67165111 AGGTGAAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.39, C:0.07, G:0.11, T:0.43
Consensus pattern (28 bp):
TTAATTTTGATTACATTTAGATCAAGAA
Found at i:67168347 original size:29 final size:30
Alignment explanation
Indices: 67168315--67168374 Score: 77
Period size: 29 Copynumber: 2.0 Consensus size: 30
67168305 TCCTTAACTC
67168315 AAACTTTGGAAAAATTACA-TTTTGCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
* * * *
67168344 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
67168374 A
1 A
67168375 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 15 0.58
30 11 0.42
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACACTTTTGCCCCT
Found at i:67173743 original size:68 final size:67
Alignment explanation
Indices: 67173631--67173766 Score: 184
Period size: 68 Copynumber: 2.0 Consensus size: 67
67173621 TATTTAATTG
* * ** * *
67173631 TTACATTGTTCAAAACAGCCCATAAATCATATTTTGGAAAAATTATAGTTTTGGCCCTAGGCTCG
1 TTACATTGTTCAAAACAGCCCATAAATCATACTTT-GAAAAATTACAAATTAGCCCCTAGGCTCG
67173696 TAA
65 TAA
67173699 TTACATTGTTCAAAACAGCCCATAAATCATACTTT-AATATAATTACAAATTAGCCCCTAGGCTC
1 TTACATTGTTCAAAACAGCCCATAAATCATACTTTGAA-A-AATTACAAATTAGCCCCTAGGCTC
67173763 GTAA
64 GTAA
67173767 AATGAAATGT
Statistics
Matches: 60, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
66 2 0.03
67 1 0.02
68 57 0.95
ACGTcount: A:0.36, C:0.20, G:0.12, T:0.32
Consensus pattern (67 bp):
TTACATTGTTCAAAACAGCCCATAAATCATACTTTGAAAAATTACAAATTAGCCCCTAGGCTCGT
AA
Found at i:67178419 original size:40 final size:40
Alignment explanation
Indices: 67178374--67178540 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
67178364 CGGAATATAA
67178374 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
67178414 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
67178454 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
67178494 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
67178533 CCGGATAT
1 CCGGATAT
67178541 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:67178524 original size:80 final size:79
Alignment explanation
Indices: 67178374--67178540 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
67178364 CGGAATATAA
* *
67178374 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
67178439 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
67178454 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
67178516 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
67178533 CCGGATAT
1 CCGGATAT
67178541 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:67179388 original size:17 final size:19
Alignment explanation
Indices: 67179365--67179410 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
67179355 AAGAAGCATG
67179365 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
67179383 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
67179401 AATCATGCTC
1 AATCATGCTC
67179411 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:67186428 original size:40 final size:40
Alignment explanation
Indices: 67186383--67186549 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
67186373 CGGAATATAA
67186383 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
67186423 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
67186463 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
67186503 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
67186542 CCGGATAT
1 CCGGATAT
67186550 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:67186533 original size:80 final size:79
Alignment explanation
Indices: 67186383--67186549 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
67186373 CGGAATATAA
* *
67186383 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
67186448 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
67186463 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
67186525 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
67186542 CCGGATAT
1 CCGGATAT
67186550 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:67187397 original size:17 final size:19
Alignment explanation
Indices: 67187374--67187419 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
67187364 AAGAAGCATG
67187374 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
67187392 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
67187410 AATCATGCTC
1 AATCATGCTC
67187420 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:67196908 original size:29 final size:29
Alignment explanation
Indices: 67196869--67196947 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
67196859 CTTAATAATC
*
67196869 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
67196899 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
67196928 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
67196948 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:67197610 original size:2 final size:2
Alignment explanation
Indices: 67197592--67197638 Score: 76
Period size: 2 Copynumber: 23.5 Consensus size: 2
67197582 TGATGGCCGA
* *
67197592 AT AT GT AT AT CT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
67197634 AT AT A
1 AT AT A
67197639 GCAACTATAC
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (2 bp):
AT
Found at i:67201244 original size:40 final size:40
Alignment explanation
Indices: 67201147--67201361 Score: 307
Period size: 40 Copynumber: 5.5 Consensus size: 40
67201137 CGGATGATAA
* *
67201147 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
67201187 CC-GGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
67201226 CCGGGCTAAGTCCCGAAGGCATTTGT--GAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
67201264 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
67201304 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
67201344 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
67201362 TACTTGGTTG
Statistics
Matches: 163, Mismatches: 7, Indels: 11
0.90 0.04 0.06
Matches are distributed among these distances:
38 37 0.23
39 53 0.33
40 73 0.45
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:67201297 original size:78 final size:78
Alignment explanation
Indices: 67201143--67201361 Score: 311
Period size: 78 Copynumber: 2.8 Consensus size: 78
67201133 TATTCGGATG
67201143 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGCTAAGTCCCGAAGGCAT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGC-AGTGACTAATTCCGGCTAAGTCCCGAAGGCAT
*
67201208 TTGTGCTAGTTACT
65 TTGTGCGAGTTACT
* *
67201222 ATATCCGGGCTAAGTCCCGAAGGCATTTGTG-AGTTACT-ATATCCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAGTGACTAAT-TCC-GGCTAAGTCCCGAAGGCA
67201285 TTTGTGCGAGTTACT
64 TTTGTGCGAGTTACT
* *
67201300 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGT-AGCT-ATGTCCGGCTAAATCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGC-AGTGA-CTAAT-TCCGGCTAAGTCCCGAAGG
67201362 TACTTGGTTG
Statistics
Matches: 128, Mismatches: 7, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
76 2 0.02
77 9 0.07
78 61 0.48
79 46 0.36
80 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (78 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAGTGACTAATTCCGGCTAAGTCCCGAAGGCATT
TGTGCGAGTTACT
Found at i:67209383 original size:40 final size:40
Alignment explanation
Indices: 67209189--67209410 Score: 297
Period size: 40 Copynumber: 5.6 Consensus size: 40
67209179 TATTCGGATG
* * *
67209189 ATAACCGAGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
67209229 AATAA-CTGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACT
1 -ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
67209269 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
67209309 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
67209349 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
** *
67209389 ATGTCC-GGCTAAATCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
67209411 TACTTGGTTG
Statistics
Matches: 166, Mismatches: 13, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
39 20 0.12
40 142 0.86
41 4 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:67212724 original size:9 final size:9
Alignment explanation
Indices: 67212710--67212741 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
67212700 CGTGTAATGC
67212710 CCCAAAAAT
1 CCCAAAAAT
67212719 CCC-AAAA-
1 CCCAAAAAT
67212726 CCCAAAAAT
1 CCCAAAAAT
67212735 CCCAAAA
1 CCCAAAA
67212742 TCTTGAACTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
7 3 0.14
8 8 0.38
9 10 0.48
ACGTcount: A:0.56, C:0.38, G:0.00, T:0.06
Consensus pattern (9 bp):
CCCAAAAAT
Found at i:67212731 original size:16 final size:16
Alignment explanation
Indices: 67212710--67212741 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
67212700 CGTGTAATGC
67212710 CCCAAAAATCCCAAAA
1 CCCAAAAATCCCAAAA
67212726 CCCAAAAATCCCAAAA
1 CCCAAAAATCCCAAAA
67212742 TCTTGAACTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.56, C:0.38, G:0.00, T:0.06
Consensus pattern (16 bp):
CCCAAAAATCCCAAAA
Found at i:67214034 original size:16 final size:16
Alignment explanation
Indices: 67214013--67214066 Score: 72
Period size: 16 Copynumber: 3.4 Consensus size: 16
67214003 ATGTATCGGT
*
67214013 AAAAGCCGAAATGTCG
1 AAAAGCCGAAATGCCG
*
67214029 AAAAGCCAAAATGCCG
1 AAAAGCCGAAATGCCG
* *
67214045 AAATGCTGAAATGCCG
1 AAAAGCCGAAATGCCG
67214061 AAAAGC
1 AAAAGC
67214067 TAAAAGTTTG
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
16 32 1.00
ACGTcount: A:0.46, C:0.20, G:0.22, T:0.11
Consensus pattern (16 bp):
AAAAGCCGAAATGCCG
Found at i:67214048 original size:8 final size:8
Alignment explanation
Indices: 67214017--67214063 Score: 58
Period size: 8 Copynumber: 5.9 Consensus size: 8
67214007 ATCGGTAAAA
67214017 GCCGAAAT
1 GCCGAAAT
* *
67214025 GTCGAAAA
1 GCCGAAAT
*
67214033 GCCAAAAT
1 GCCGAAAT
67214041 GCCGAAAT
1 GCCGAAAT
*
67214049 GCTGAAAT
1 GCCGAAAT
67214057 GCCGAAA
1 GCCGAAA
67214064 AGCTAAAAGT
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
8 31 1.00
ACGTcount: A:0.43, C:0.21, G:0.23, T:0.13
Consensus pattern (8 bp):
GCCGAAAT
Found at i:67214055 original size:24 final size:24
Alignment explanation
Indices: 67214013--67214066 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 24
67214003 ATGTATCGGT
67214013 AAAAGCCGAAATGTCGAAAAGCC-
1 AAAAGCCGAAATGTCGAAAAGCCG
*
67214036 AAAATGCCGAAATG-CTGAAATGCCG
1 AAAA-GCCGAAATGTC-GAAAAGCCG
67214061 AAAAGC
1 AAAAGC
67214067 TAAAAGTTTG
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
23 5 0.19
24 18 0.67
25 4 0.15
ACGTcount: A:0.46, C:0.20, G:0.22, T:0.11
Consensus pattern (24 bp):
AAAAGCCGAAATGTCGAAAAGCCG
Found at i:67214392 original size:28 final size:29
Alignment explanation
Indices: 67214282--67214393 Score: 140
Period size: 29 Copynumber: 3.9 Consensus size: 29
67214272 GTGAGCATGA
* *
67214282 ATATGAACGTGA-TTGGGCCTAACGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
67214310 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
67214339 ATAT-ACAGGTGATTTGGGCCTAATGGGCC
1 ATATGA-ATGTGATTTGGGCCTAATGGGCC
* *
67214368 ATATGAATATGA-TTGGGCTTAATGGG
1 ATATGAATGTGATTTGGGCCTAATGGG
67214394 TCAGATACAG
Statistics
Matches: 74, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
28 24 0.32
29 49 0.66
30 1 0.01
ACGTcount: A:0.27, C:0.14, G:0.30, T:0.29
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:67214392 original size:57 final size:57
Alignment explanation
Indices: 67214290--67214405 Score: 162
Period size: 57 Copynumber: 2.0 Consensus size: 57
67214280 GAATATGAAC
* *
67214290 GTGATTGGGCCTAACGGGCCATATAAATGTGATTTGGGCCTAATGGGCCATATACAG
1 GTGATTGGGCCTAACGGGCCATATAAATATGATTTGGGCCTAATGGGCCAGATACAG
* * * *
67214347 GTGATTTGGGCCTAATGGGCCATATGAATATGA-TTGGGCTTAATGGGTCAGATACAG
1 GTGA-TTGGGCCTAACGGGCCATATAAATATGATTTGGGCCTAATGGGCCAGATACAG
67214404 GT
1 GT
67214406 ATGTGAAATT
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
57 27 0.52
58 25 0.48
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (57 bp):
GTGATTGGGCCTAACGGGCCATATAAATATGATTTGGGCCTAATGGGCCAGATACAG
Found at i:67216209 original size:49 final size:49
Alignment explanation
Indices: 67216126--67216313 Score: 214
Period size: 49 Copynumber: 3.8 Consensus size: 49
67216116 TAGCCGAAGC
* *
67216126 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* *** * * * *
67216175 AATCTACTACACATAGTAGCCTACACTTAGTACTACACACGTGATCACAGT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-C-CAAT
* * * **
67216226 TTTCGGGAATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
*
67216275 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACA
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACA
67216314 CGTGACCTCA
Statistics
Matches: 111, Mismatches: 26, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
49 73 0.66
50 2 0.02
51 36 0.32
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (49 bp):
TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
Found at i:67216252 original size:100 final size:100
Alignment explanation
Indices: 67216136--67216318 Score: 312
Period size: 100 Copynumber: 1.8 Consensus size: 100
67216126 TATCTGGTAC
*
67216136 GCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTACTACACATAGTAGCCTACAC
1 GCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCACTACACATAGTAGCCTACAC
67216201 TTAGTACTACACACGTGATCACAGTTTTCGGGAAT
66 TTAGTACTACACACGTGATCACAGTTTTCGGGAAT
* ** * *
67216236 GCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTGCAC
1 GCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCACTACACATAGTAGCCTACAC
67216301 TTAGTACTACACACGTGA
66 TTAGTACTACACACGTGA
67216319 CCTCACAATA
Statistics
Matches: 77, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
100 77 1.00
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (100 bp):
GCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCACTACACATAGTAGCCTACAC
TTAGTACTACACACGTGATCACAGTTTTCGGGAAT
Found at i:67219895 original size:27 final size:26
Alignment explanation
Indices: 67219865--67219957 Score: 123
Period size: 27 Copynumber: 3.4 Consensus size: 26
67219855 GGTGGCTACA
67219865 CCACAATTATCTGATCTGGTGGCTCTG
1 CCAC-ATTATCTGATCTGGTGGCTCTG
*
67219892 CCACATATATCTGTTCTGGTGGCTCTG
1 CCACAT-TATCTGATCTGGTGGCTCTG
*
67219919 CCACGATTATCTGTATCTGGTGACTCTG
1 CCAC-ATTATCTG-ATCTGGTGGCTCTG
*
67219947 TCACATTATCT
1 CCACATTATCT
67219958 TCTCTGGCAG
Statistics
Matches: 59, Mismatches: 4, Indels: 6
0.86 0.06 0.09
Matches are distributed among these distances:
26 2 0.03
27 40 0.68
28 17 0.29
ACGTcount: A:0.18, C:0.26, G:0.19, T:0.37
Consensus pattern (26 bp):
CCACATTATCTGATCTGGTGGCTCTG
Found at i:67221942 original size:43 final size:43
Alignment explanation
Indices: 67221867--67222023 Score: 176
Period size: 43 Copynumber: 3.7 Consensus size: 43
67221857 TCGTACAATA
* * *
67221867 CCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCGATG
1 CCAACGTCCTAGACGTGGTCTTACACGAAATCAAATATCGATG
* * * *
67221910 CC-ACTATCCTAGACGGGGTTTTACACGAAATCAAATA-CGAAG
1 CCAAC-GTCCTAGACGTGGTCTTACACGAAATCAAATATCGATG
* * *
67221952 CCAACGTCCCACACGTGGTCTTACACGTAAATCATAA-GTCGATG
1 CCAACGTCCTAGACGTGGTCTTACACG-AAATCA-AATATCGATG
67221996 CCAACGTCCTAGACGTGGTCTTACACGA
1 CCAACGTCCTAGACGTGGTCTTACACGA
67222024 TAACACATAT
Statistics
Matches: 93, Mismatches: 16, Indels: 10
0.78 0.13 0.08
Matches are distributed among these distances:
42 25 0.27
43 37 0.40
44 31 0.33
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (43 bp):
CCAACGTCCTAGACGTGGTCTTACACGAAATCAAATATCGATG
Found at i:67222020 original size:86 final size:85
Alignment explanation
Indices: 67221867--67222023 Score: 219
Period size: 86 Copynumber: 1.8 Consensus size: 85
67221857 TCGTACAATA
* * *
67221867 CCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCACTATCCTAGACGGGGTTTT
1 CCAACGTCCCACACGTGGTCTTACACGTAATCAAATATCGATGCCACTATCCTAGACGGGGTCTT
67221932 ACACGAAATCAAATACGAAG
66 ACACGAAATCAAATACGAAG
* * *
67221952 CCAACGTCCCACACGTGGTCTTACACGTAAATCATAA-GTCGATGCCAAC-GTCCTAGACGTGGT
1 CCAACGTCCCACACGTGGTCTTACACGT-AATCA-AATATCGATGCC-ACTATCCTAGACGGGGT
67222015 CTTACACGA
63 CTTACACGA
67222024 TAACACATAT
Statistics
Matches: 63, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
85 26 0.41
86 33 0.52
87 4 0.06
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (85 bp):
CCAACGTCCCACACGTGGTCTTACACGTAATCAAATATCGATGCCACTATCCTAGACGGGGTCTT
ACACGAAATCAAATACGAAG
Found at i:67224142 original size:20 final size:20
Alignment explanation
Indices: 67224117--67224168 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
67224107 GTGCGATTGC
67224117 ACACGCCCGTGTGGCTTGAG
1 ACACGCCCGTGTGGCTTGAG
67224137 ACACGCCCGTGTGGCTTGAG
1 ACACGCCCGTGTGGCTTGAG
*
67224157 ACACACCCGTGT
1 ACACGCCCGTGT
67224169 AACTCTCTGT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.17, C:0.33, G:0.31, T:0.19
Consensus pattern (20 bp):
ACACGCCCGTGTGGCTTGAG
Found at i:67237539 original size:64 final size:64
Alignment explanation
Indices: 67237437--67237643 Score: 195
Period size: 67 Copynumber: 3.2 Consensus size: 64
67237427 CATCATGTGT
*
67237437 ACAAGAGAGCTACAAGACATTATATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGT
1 ACAAGAGAGCTAC--GAGA-TATATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGT
67237502 AG
63 AG
* * * * * * * *
67237504 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGATACCATGT
1 ACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGT
67237569 AG
63 AG
* * * * *
67237571 ACAAGAGAGCTACGAGATAAACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-G
1 ACAAGAGAGCTACGAGATATA-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG
67237633 TACAAGAGAGC
1 -ACAAGAGAGC
67237644 AAACTATATG
Statistics
Matches: 114, Mismatches: 21, Indels: 14
0.77 0.14 0.09
Matches are distributed among these distances:
62 1 0.01
63 18 0.16
64 24 0.21
65 10 0.09
66 16 0.14
67 43 0.38
68 2 0.02
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.23
Consensus pattern (64 bp):
ACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG
Found at i:67244071 original size:16 final size:16
Alignment explanation
Indices: 67244045--67244087 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
67244035 GTAGATCAGC
*
67244045 AAAAGCCGAAATGCCG
1 AAAAGCTGAAATGCCG
*
67244061 AAAAGTTGAAATGCCG
1 AAAAGCTGAAATGCCG
67244077 AAAAGCTGAAA
1 AAAAGCTGAAA
67244088 GTTTGGGTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.49, C:0.16, G:0.23, T:0.12
Consensus pattern (16 bp):
AAAAGCTGAAATGCCG
Found at i:67244351 original size:28 final size:29
Alignment explanation
Indices: 67244297--67244354 Score: 82
Period size: 28 Copynumber: 2.0 Consensus size: 29
67244287 GAAAGCATGT
*
67244297 ATATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGAGATTTGGGCCTAATGGGCC
* *
67244326 ATATGAATGAGA-TTGGGCTTAGTGGGCC
1 ATATGAATGAGATTTGGGCCTAATGGGCC
67244354 A
1 A
67244355 CATACCTGTA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
28 15 0.58
29 11 0.42
ACGTcount: A:0.26, C:0.12, G:0.33, T:0.29
Consensus pattern (29 bp):
ATATGAATGAGATTTGGGCCTAATGGGCC
Found at i:67247344 original size:40 final size:40
Alignment explanation
Indices: 67247278--67247444 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
67247268 AAATTGAATG
* * *
67247278 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
67247317 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
67247357 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
67247397 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
67247437 ATATCCGG
1 ATATCCGG
67247445 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:67262199 original size:46 final size:44
Alignment explanation
Indices: 67262143--67262309 Score: 135
Period size: 46 Copynumber: 3.6 Consensus size: 44
67262133 TGAGCATCCA
*
67262143 AACTCCTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCA-CTATGGATG-GAATGTCCG
* *
67262189 AACTCGTTGAGTTGAGTCCGAGTT---TGTGAGATGTAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTATG-GATGGAA-T--G--TCCG
* * *
67262236 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATATGAACG-CCC
1 AACTCGTTGAGTTGAGTCCGAGTTCAC-TATGGAT-GGAATGTCCG
* *
67262281 AAGATCATTGAGTTGAGTCCGAGTTCACT
1 AA-CTCGTTGAGTTGAGTCCGAGTTCACT
67262310 TAGGGGCGGG
Statistics
Matches: 99, Mismatches: 10, Indels: 25
0.74 0.07 0.19
Matches are distributed among these distances:
42 5 0.05
43 5 0.05
45 6 0.06
46 46 0.46
47 28 0.28
48 1 0.01
50 3 0.03
51 5 0.05
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.29
Consensus pattern (44 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGGAATGTCCG
Found at i:67262295 original size:93 final size:93
Alignment explanation
Indices: 67262136--67262305 Score: 243
Period size: 93 Copynumber: 1.8 Consensus size: 93
67262126 GGATGGTTGA
* * * * *
67262136 GCATCCAAACTCCTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCAAACTCCTTGAGTTGAGTCCGAGTTCACCTATGGATACGAACGTCCCAAATCATTGAGT
67262201 TGAGTCCGAGTTTGTGAGATGTAACTAG
66 TGAGTCCGAGTTTGTGAGATGTAACTAG
* * * *
67262229 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATATGAACG-CCCAAGATCATTGAG
1 GCATCCAAACTCCTTGAGTTGAGTCCGAGTTCACCTATGGATACGAACGTCCCAA-ATCATTGAG
67262293 TTGAGTCCGAGTT
65 TTGAGTCCGAGTT
67262306 CACTTAGGGG
Statistics
Matches: 67, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
92 4 0.06
93 63 0.94
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (93 bp):
GCATCCAAACTCCTTGAGTTGAGTCCGAGTTCACCTATGGATACGAACGTCCCAAATCATTGAGT
TGAGTCCGAGTTTGTGAGATGTAACTAG
Found at i:67263919 original size:29 final size:29
Alignment explanation
Indices: 67263886--67263949 Score: 119
Period size: 29 Copynumber: 2.2 Consensus size: 29
67263876 CATGAACTTG
67263886 TCTTACCCTTTTTAGTGTAACTCGTCTTA
1 TCTTACCCTTTTTAGTGTAACTCGTCTTA
67263915 TCTTACCCTTTTTAGTGTAACTCGTCTTA
1 TCTTACCCTTTTTAGTGTAACTCGTCTTA
*
67263944 CCTTAC
1 TCTTAC
67263950 ATTACCTTGA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.17, C:0.27, G:0.09, T:0.47
Consensus pattern (29 bp):
TCTTACCCTTTTTAGTGTAACTCGTCTTA
Found at i:67264258 original size:55 final size:53
Alignment explanation
Indices: 67264016--67264268 Score: 212
Period size: 53 Copynumber: 4.8 Consensus size: 53
67264006 ACACGGGTAC
* * * * * *
67264016 CTTACCATTTCCATGACTTGTCACGGTCTTACGTGGTATCCTT---TT-GAAA
1 CTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTAGAAA
* * * ***
67264065 CTTACCATTTCCATGTCTCAACATGGTCTTACATGGTATCCTTGCCTTATG-AA
1 CTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTA-GAAA
* * * * * *
67264118 CTCACTAAAGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGA
1 CTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCC-TTGCCTTAGAAA
* * * * *
67264171 TTTATCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAA
1 CTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTAGAAA
*
67264224 CATTACCAGTTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 C-TTACCA-ATGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
67264269 AAACCCTAAT
Statistics
Matches: 159, Mismatches: 35, Indels: 14
0.76 0.17 0.07
Matches are distributed among these distances:
49 37 0.23
52 4 0.03
53 78 0.49
54 8 0.05
55 32 0.20
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (53 bp):
CTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTAGAAA
Found at i:67266051 original size:46 final size:43
Alignment explanation
Indices: 67265958--67266083 Score: 144
Period size: 46 Copynumber: 2.8 Consensus size: 43
67265948 TGATATGTCT
* * *
67265958 GCCAGTGTAAGACATGTCTAGGACATGCAACGGCCACATTATAAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGG---CATTAGAAGA
*
67266004 GCCACTGTAAGACATGTCTGGGACATGCATCGGCATTAAGACGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCATT-AGA--AGA
* *
67266050 GCTAGTGTAAGACATATCTGGGACATGCATCGGC
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGC
67266084 CTCGAGATAT
Statistics
Matches: 70, Mismatches: 7, Indels: 6
0.84 0.08 0.07
Matches are distributed among these distances:
43 4 0.06
44 2 0.03
46 64 0.91
ACGTcount: A:0.31, C:0.21, G:0.27, T:0.21
Consensus pattern (43 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCATTAGAAGA
Found at i:67266219 original size:49 final size:49
Alignment explanation
Indices: 67266003--67266316 Score: 186
Period size: 49 Copynumber: 6.6 Consensus size: 49
67265993 ACATTATAAG
* * * * * * *
67266003 AGCCACTGTAAGACATGTCTGGGACAT-GCATCGGCAT-TA-AGACGAG
1 AGCCAATGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAA
* * * * * * *
67266049 AGCTAGTGTAAGACATATCTGGGACAT-GCATCGGCCTCGAGATAT-ACA
1 AGCCAATGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGA-A
* * * * *
67266097 AGCTAGTGTAAGACCTGTCTGGGACATGGCAT-GAGCT---T-GTTGTA
1 AGCCAATGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAA
* * * * *
67266141 TGCTAGTGTAAGACCTGTCTGGGACATGGCATTGACAC-CGATAGATGAG
1 AGCCAATGTAAGACCTGTCTGGGACATGGCATCGAC-CTCGATAGATGAA
* *
67266190 AGCCAATGTAAGACCTGTCTGGGACATGGCATCGGCCTCGATATATGAA
1 AGCCAATGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAA
* * * * * * **
67266239 AGTCAGTGTAAGACCTGTTTAGGACATGGCATCGACTTTGAT-G-TGCT
1 AGCCAATGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAA
* *
67266286 AGCCAGTGTAAGACCATGTCTGGGATATGGC
1 AGCCAATGTAAGACC-TGTCTGGGACATGGC
67266317 GTCGGCATCT
Statistics
Matches: 213, Mismatches: 42, Indels: 24
0.76 0.15 0.09
Matches are distributed among these distances:
44 33 0.15
45 2 0.01
46 34 0.16
47 18 0.08
48 44 0.21
49 82 0.38
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (49 bp):
AGCCAATGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAA
Found at i:67266254 original size:142 final size:145
Alignment explanation
Indices: 67266003--67266316 Score: 364
Period size: 142 Copynumber: 2.2 Consensus size: 145
67265993 ACATTATAAG
* * * ** * * *
67266003 AGCCACTGTAAGA-CATGTCTGGGACAT-GCATCGGCA-TTA-AGACGAGAGCTAGTGTAAGACA
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATTGACACCGATAGATGAGAGCCAATGTAAGACA
*
67266064 TATCTGGGACATGCATCGGCCTCGAGATATACAAGCTAGTGTAAGACCTGTCTGGGACATGGCAT
66 TATCTGGGACATGCATCGGCCTCGAGATATACAAGCTAGTGTAAGACCTGTCTAGGACATGGCAT
67266129 -GAGC-TTG-T-TG-T
131 CGA-CTTTGATGTGCT
*
67266140 ATGCTAGTGTAAGACC-TGTCTGGGACATGGCATTGACACCGATAGATGAGAGCCAATGTAAGAC
1 A-GCCAGTGTAAGACCATGTCTGGGACATGGCATTGACACCGATAGATGAGAGCCAATGTAAGAC
* * * *
67266204 CTGTCTGGGACATGGCATCGGCCTCGATATATGA-AAG-TCAGTGTAAGACCTGTTTAGGACATG
65 ATATCTGGGACAT-GCATCGGCCTCGAGATAT-ACAAGCT-AGTGTAAGACCTGTCTAGGACATG
67266267 GCATCGACTTTGATGTGCT
127 GCATCGACTTTGATGTGCT
*
67266286 AGCCAGTGTAAGACCATGTCTGGGATATGGC
1 AGCCAGTGTAAGACCATGTCTGGGACATGGC
67266317 GTCGGCATCT
Statistics
Matches: 147, Mismatches: 16, Indels: 19
0.81 0.09 0.10
Matches are distributed among these distances:
137 1 0.01
138 22 0.15
139 8 0.05
140 1 0.01
141 30 0.20
142 47 0.32
143 6 0.04
144 1 0.01
145 15 0.10
146 16 0.11
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (145 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATTGACACCGATAGATGAGAGCCAATGTAAGACA
TATCTGGGACATGCATCGGCCTCGAGATATACAAGCTAGTGTAAGACCTGTCTAGGACATGGCAT
CGACTTTGATGTGCT
Found at i:67268720 original size:27 final size:27
Alignment explanation
Indices: 67268679--67268742 Score: 101
Period size: 27 Copynumber: 2.4 Consensus size: 27
67268669 GAGCTCTGAA
*
67268679 ACTCGAATGTAATCTAGCACGATCTAT
1 ACTCGAATGTAATCTAGCACAATCTAT
* *
67268706 ACTCGAATGTGATCTAGCACAATCTCT
1 ACTCGAATGTAATCTAGCACAATCTAT
67268733 ACTCGAATGT
1 ACTCGAATGT
67268743 CCCACATTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.30
Consensus pattern (27 bp):
ACTCGAATGTAATCTAGCACAATCTAT
Found at i:67271099 original size:43 final size:43
Alignment explanation
Indices: 67271049--67271176 Score: 201
Period size: 43 Copynumber: 3.0 Consensus size: 43
67271039 TACATCAAAT
67271049 ATGATACTCATTCCAAATGTACCTGAATCGGATACATGTTCAC
1 ATGATACTCATTCCAAATGTACCTGAATCGGATACATGTTCAC
67271092 ATGATACTCATTCCAAATGTACCTGAATCGGATACATGTTCAC
1 ATGATACTCATTCCAAATGTACCTGAATCGGATACATGTTCAC
* *
67271135 ATCG-TA---ATTCCAAATGTACCTAAATCGGATACTTGTTCAC
1 AT-GATACTCATTCCAAATGTACCTGAATCGGATACATGTTCAC
67271175 AT
1 AT
67271177 CGTAATTCAC
Statistics
Matches: 82, Mismatches: 2, Indels: 5
0.92 0.02 0.06
Matches are distributed among these distances:
40 34 0.41
43 47 0.57
44 1 0.01
ACGTcount: A:0.33, C:0.23, G:0.13, T:0.31
Consensus pattern (43 bp):
ATGATACTCATTCCAAATGTACCTGAATCGGATACATGTTCAC
Found at i:67271161 original size:40 final size:40
Alignment explanation
Indices: 67271058--67271184 Score: 193
Period size: 40 Copynumber: 3.1 Consensus size: 40
67271048 TATGATACTC
67271058 ATTCCAAATGTACCTGAATCGGATACATGTTCACAT-GATA
1 ATTCCAAATGTACCTGAATCGGATACATGTTCACATCG-TA
67271098 CTCATTCCAAATGTACCTGAATCGGATACATGTTCACATCGTA
1 ---ATTCCAAATGTACCTGAATCGGATACATGTTCACATCGTA
* *
67271141 ATTCCAAATGTACCTAAATCGGATACTTGTTCACATCGTA
1 ATTCCAAATGTACCTGAATCGGATACATGTTCACATCGTA
67271181 ATTC
1 ATTC
67271185 ACTTTCTTAG
Statistics
Matches: 81, Mismatches: 2, Indels: 5
0.92 0.02 0.06
Matches are distributed among these distances:
40 42 0.52
43 38 0.47
44 1 0.01
ACGTcount: A:0.32, C:0.23, G:0.13, T:0.31
Consensus pattern (40 bp):
ATTCCAAATGTACCTGAATCGGATACATGTTCACATCGTA
Found at i:67271312 original size:43 final size:42
Alignment explanation
Indices: 67271255--67271413 Score: 158
Period size: 43 Copynumber: 3.7 Consensus size: 42
67271245 AGCTCGTACA
** * * *
67271255 ATGCCAATGTCCCAGACGTGGTCTTACATGTAATCAAATAACG
1 ATGCCAACATCCCACACATGGTCTTACACGTAATCAAAT-ACG
* * * * *
67271298 ATGTC-ACTATCCCAGACAAGGTCTTACACGAAATCAAATATG
1 ATGCCAAC-ATCCCACACATGGTCTTACACGTAATCAAATACG
* *
67271340 ATGCCAACATCCCACACATGGTCTTACACATAAATCATAATTCG
1 ATGCCAACATCCCACACATGGTCTTACACGT-AATCA-AATACG
*
67271384 ATGCCAACATCCCACACGTGGTCTTACACG
1 ATGCCAACATCCCACACATGGTCTTACACG
67271414 ATAACACATA
Statistics
Matches: 95, Mismatches: 17, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
42 26 0.27
43 37 0.39
44 32 0.34
ACGTcount: A:0.34, C:0.28, G:0.14, T:0.24
Consensus pattern (42 bp):
ATGCCAACATCCCACACATGGTCTTACACGTAATCAAATACG
Found at i:67271395 original size:44 final size:43
Alignment explanation
Indices: 67271306--67271417 Score: 147
Period size: 44 Copynumber: 2.6 Consensus size: 43
67271296 CGATGTCACT
* * *
67271306 ATCCCAGACAAGGTCTTACAC-GAAATCAAATATGATGCCAAC
1 ATCCCACACATGGTCTTACACATAAATCAAATATGATGCCAAC
67271348 ATCCCACACATGGTCTTACACATAAATCATAAT-TCGATGCCAAC
1 ATCCCACACATGGTCTTACACATAAATCA-AATAT-GATGCCAAC
*
67271392 ATCCCACACGTGGTCTTACACGATAA
1 ATCCCACACATGGTCTTACAC-ATAA
67271418 CACATATCGG
Statistics
Matches: 62, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
42 19 0.31
43 7 0.11
44 32 0.52
45 4 0.06
ACGTcount: A:0.37, C:0.29, G:0.12, T:0.22
Consensus pattern (43 bp):
ATCCCACACATGGTCTTACACATAAATCAAATATGATGCCAAC
Found at i:67276485 original size:46 final size:45
Alignment explanation
Indices: 67276320--67276489 Score: 193
Period size: 46 Copynumber: 3.7 Consensus size: 45
67276310 AGTTGAGCAT
* *
67276320 CCGAACTCGTTGAGTTGAGTCCGAGTTCAC-TATGGATGCAAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-AACGC
* * * * * *
67276365 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAATGTA-ACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACT-TATGGATGCAACGC
67276409 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-AACGC
*
67276457 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
67276490 GGGGCGGGTT
Statistics
Matches: 104, Mismatches: 14, Indels: 13
0.79 0.11 0.10
Matches are distributed among these distances:
44 2 0.02
45 29 0.28
46 68 0.65
47 2 0.02
48 3 0.03
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (45 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACGC
Found at i:67283987 original size:93 final size:93
Alignment explanation
Indices: 67283828--67283998 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
67283818 GGATGGTTGA
* * * *
67283828 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGCCCGAGTTCACCTATGGATGCGAACGCCCGAACTCATTGAGT
67283893 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
67283921 GCATCCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGCCCGAGTTCACCTATGGATGCGAACGCCCGAACTCATTGAGT
67283986 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
67283999 ACTTAGGGGT
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGCCCGAGTTCACCTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:67284001 original size:46 final size:46
Alignment explanation
Indices: 67283832--67284003 Score: 181
Period size: 46 Copynumber: 3.7 Consensus size: 46
67283822 GGTTGAGCAT
* * *
67283832 CCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * * *
67283878 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
*
67283923 ATCCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* *
67283971 CCGAGCTCATTGAGTTGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
67284004 GGGGTGGGTT
Statistics
Matches: 102, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
45 2 0.02
46 58 0.57
47 27 0.26
48 4 0.04
50 3 0.03
51 3 0.03
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:67288937 original size:47 final size:47
Alignment explanation
Indices: 67288883--67288982 Score: 137
Period size: 47 Copynumber: 2.1 Consensus size: 47
67288873 TTAGGATTTT
* * *
67288883 ATGTGATGAATGTGAACGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAAGCCGAATGGCCA
* * * *
67288930 ATGTGATGATTGTGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAAGCCGAATGGCCA
67288977 ATGTGA
1 ATGTGA
67288983 AATATATATA
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGAGATAAAGCCGAATGGCCA
Found at i:67289080 original size:102 final size:102
Alignment explanation
Indices: 67288952--67289139 Score: 349
Period size: 102 Copynumber: 1.8 Consensus size: 102
67288942 TGAACATGCA
*
67288952 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGC
1 TATATGTGGTAAAGCCGAATGACTAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGC
67289017 CGAATGGCTAATGTGAAATATCTATATATGAGATATG
66 CGAATGGCTAATGTGAAATATCTATATATGAGATATG
*
67289054 TATATGTGGTAAAGCCGAATGACTAATGTGAAATATATATATGAGATATGTATATGTGGTAGAGC
1 TATATGTGGTAAAGCCGAATGACTAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGC
*
67289119 CGAATGGCTAGTGTGAAATAT
66 CGAATGGCTAATGTGAAATAT
67289140 GTAGGCAGTG
Statistics
Matches: 83, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
102 83 1.00
ACGTcount: A:0.37, C:0.07, G:0.24, T:0.32
Consensus pattern (102 bp):
TATATGTGGTAAAGCCGAATGACTAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGC
CGAATGGCTAATGTGAAATATCTATATATGAGATATG
Found at i:67289158 original size:50 final size:50
Alignment explanation
Indices: 67288952--67289139 Score: 331
Period size: 50 Copynumber: 3.7 Consensus size: 50
67288942 TGAACATGCA
67288952 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATG
67289002 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATCTATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATA--TATATATGAGATATG
*
67289054 TATATGTGGTAAAGCCGAATGACTAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATG
* *
67289104 TATATGTGGTAGAGCCGAATGGCTAGTGTGAAATAT
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
67289140 GTAGGCAGTG
Statistics
Matches: 132, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
50 83 0.63
52 49 0.37
ACGTcount: A:0.37, C:0.07, G:0.24, T:0.32
Consensus pattern (50 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATG
Found at i:67289341 original size:37 final size:37
Alignment explanation
Indices: 67289289--67289471 Score: 330
Period size: 37 Copynumber: 4.9 Consensus size: 37
67289279 GGAAATATAT
*
67289289 TCCGGGTAAGGCCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
67289326 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
67289363 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
67289400 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
67289437 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTA
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTA
67289472 CGTCTGAGCT
Statistics
Matches: 141, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 141 1.00
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:67296838 original size:7 final size:7
Alignment explanation
Indices: 67296826--67296890 Score: 85
Period size: 7 Copynumber: 9.3 Consensus size: 7
67296816 ACGATCTCCG
67296826 TAGGGTT
1 TAGGGTT
67296833 TAGGGTT
1 TAGGGTT
67296840 TAGGGTT
1 TAGGGTT
**
67296847 TATAGTT
1 TAGGGTT
*
67296854 TAGAGTT
1 TAGGGTT
*
67296861 TATGGTT
1 TAGGGTT
67296868 TAGGGTT
1 TAGGGTT
67296875 TAGGGTT
1 TAGGGTT
*
67296882 TATGGTT
1 TAGGGTT
67296889 TA
1 TA
67296891 AGGTGACACT
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
7 51 1.00
ACGTcount: A:0.18, C:0.00, G:0.34, T:0.48
Consensus pattern (7 bp):
TAGGGTT
Found at i:67298783 original size:24 final size:24
Alignment explanation
Indices: 67298727--67298786 Score: 102
Period size: 24 Copynumber: 2.5 Consensus size: 24
67298717 ATTATGTTCG
* *
67298727 CACACATAATGCCATAGTAAATCG
1 CACACATAGTGCCATAGTAAATCA
67298751 CACACATAGTGCCATAGTAAATCA
1 CACACATAGTGCCATAGTAAATCA
67298775 CACACATAGTGC
1 CACACATAGTGC
67298787 ATTTGAGATT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.40, C:0.27, G:0.13, T:0.20
Consensus pattern (24 bp):
CACACATAGTGCCATAGTAAATCA
Found at i:67300932 original size:51 final size:50
Alignment explanation
Indices: 67300869--67301050 Score: 215
Period size: 51 Copynumber: 3.6 Consensus size: 50
67300859 CGGATACCCG
* * *
67300869 GTGGCCTGCACATAGTACCACCCTTGTAGTCAAAGCTACCTTTTTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGT-GTCAAAGCTATCTTTTTCACAAA
*
67300920 GTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATCTTTCTTCA-AAA
1 GTGGCCTTCACATAGTACCACACTTGTG-TCAAAGCTATCTTT-TTCACAAA
* * * * *
67300971 ATGGCCTTCACATAGTACCACACTTGTGACCAAGCTATC-TCTTCTCAAA
1 GTGGCCTTCACATAGTACCACACTTGTGTCAAAGCTATCTTTTTCACAAA
* * *
67301020 GTGGTCTTCACATAGTACTACACTTGAGTCA
1 GTGGCCTTCACATAGTACCACACTTGTGTCA
67301051 CTAGTGACAT
Statistics
Matches: 113, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
48 3 0.03
49 29 0.26
50 10 0.09
51 67 0.59
52 4 0.04
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.29
Consensus pattern (50 bp):
GTGGCCTTCACATAGTACCACACTTGTGTCAAAGCTATCTTTTTCACAAA
Found at i:67302114 original size:13 final size:13
Alignment explanation
Indices: 67302096--67302121 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
67302086 GCCCAAACAT
67302096 CGAAATTTTCAAA
1 CGAAATTTTCAAA
67302109 CGAAATTTTCAAA
1 CGAAATTTTCAAA
67302122 AATCATTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.15, G:0.08, T:0.31
Consensus pattern (13 bp):
CGAAATTTTCAAA
Found at i:67303831 original size:42 final size:42
Alignment explanation
Indices: 67303784--67303945 Score: 146
Period size: 42 Copynumber: 3.9 Consensus size: 42
67303774 AAAGAGCACA
** * * *
67303784 ATCACTTAAGCTTGCATGGGGAGCTTCACTGATACATAGCTT
1 ATCACTTAAGCTCACATAGCGAGCTTCACTGATACACAGCTT
* * *
67303826 GTCACTTAAGCTCACGTAGCGAGCTTCGCTGATACACAGCTT
1 ATCACTTAAGCTCACATAGCGAGCTTCACTGATACACAGCTT
* * ** * *
67303868 ATCACTTAAG-TGCGCATAGGGAGCTTTGCTAATACACAACTT
1 ATCACTTAAGCT-CACATAGCGAGCTTCACTGATACACAGCTT
* * **
67303910 ATCATTTAAGCTCACATAGAGAGCTTCGTTGATACA
1 ATCACTTAAGCTCACATAGCGAGCTTCACTGATACA
67303946 AAAATTGTGA
Statistics
Matches: 97, Mismatches: 21, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
41 1 0.01
42 95 0.98
43 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (42 bp):
ATCACTTAAGCTCACATAGCGAGCTTCACTGATACACAGCTT
Found at i:67303890 original size:84 final size:84
Alignment explanation
Indices: 67303784--67303945 Score: 200
Period size: 84 Copynumber: 1.9 Consensus size: 84
67303774 AAAGAGCACA
* * * * * * * *
67303784 ATCACTTAAGCTTGCATGGGGAGCTTCACTGATACATAGCTTGTCACTTAAGCTCACGTAGCGAG
1 ATCACTTAAGCTCGCATAGGGAGCTTCACTAATACACAACTTATCACTTAAGCTCACATAGAGAG
67303849 CTTCGCTGATACACAGCTT
66 CTTCGCTGATACACAGCTT
** *
67303868 ATCACTTAAG-TGCGCATAGGGAGCTTTGCTAATACACAACTTATCATTTAAGCTCACATAGAGA
1 ATCACTTAAGCT-CGCATAGGGAGCTTCACTAATACACAACTTATCACTTAAGCTCACATAGAGA
*
67303932 GCTTCGTTGATACA
65 GCTTCGCTGATACA
67303946 AAAATTGTGA
Statistics
Matches: 65, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
83 1 0.02
84 64 0.98
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (84 bp):
ATCACTTAAGCTCGCATAGGGAGCTTCACTAATACACAACTTATCACTTAAGCTCACATAGAGAG
CTTCGCTGATACACAGCTT
Found at i:67304905 original size:54 final size:55
Alignment explanation
Indices: 67304824--67304950 Score: 134
Period size: 54 Copynumber: 2.3 Consensus size: 55
67304814 GTGTCTTAAG
* * * *
67304824 CCGTGTAAC-CTTTGAACTAGGGACACACGGCCGTGTCCCA-GCCCGTATCCTCA-C
1 CCGTGTAACTCTTTG-AGTAGGGACACACGGCCATGTCACACGCCCATATCC-CAGC
** * * *
67304878 CCGTGTAACTCTTTGAGTAGGTTCACACGGCCATGTCACACGCCCATGTGCCAGG
1 CCGTGTAACTCTTTGAGTAGGGACACACGGCCATGTCACACGCCCATATCCCAGC
67304933 CCGTGTAACTCTTTGAGT
1 CCGTGTAACTCTTTGAGT
67304951 TGCGCCACAC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
54 31 0.51
55 30 0.49
ACGTcount: A:0.20, C:0.32, G:0.24, T:0.24
Consensus pattern (55 bp):
CCGTGTAACTCTTTGAGTAGGGACACACGGCCATGTCACACGCCCATATCCCAGC
Found at i:67307962 original size:29 final size:28
Alignment explanation
Indices: 67307929--67308227 Score: 149
Period size: 29 Copynumber: 10.2 Consensus size: 28
67307919 ACCATCGCAC
* *
67307929 TTCATAATCGATAGCCGAAGCTATCCCTT
1 TTCATAATCGATGGTCGAA-CTATCCCTT
*
67307958 TTCATAATTCGATGGTC-ATCACCATCCCTT
1 TTCATAA-TCGATGGTCGA--ACTATCCCTT
* * *
67307988 TTCATAGTTGATGGTC-ATCACCATCCCTT
1 TTCATAATCGATGGTCGA--ACTATCCCTT
** *
67308017 TTCATAATTAATAGTCGAAGCTATCCCCTT
1 TTCATAATCGATGGTCGAA-CTAT-CCCTT
* * *
67308047 TT-AAAATTCGATGGTCGTCACCATCCCCTT
1 TTCATAA-TCGATGGTCG-AACTAT-CCCTT
* * * *
67308077 TTCATAGTTGATGGTCGTCACCATCCCTT
1 TTCATAATCGATGGTCG-AACTATCCCTT
* *
67308106 TTCATAATTGATAG-CTGAAGCTATCCCTT
1 TTCATAATCGATGGTC-GAA-CTATCCCTT
* *
67308135 TTCATAATTCGATGGTCGTCACTATTCCTT
1 TTCATAA-TCGATGGTCG-AACTATCCCTT
* * * * *
67308165 TTCATAGTTGATGATCG-TCATCATCTCTT
1 TTCATAATCGATGGTCGAAC-T-ATCCCTT
* *
67308194 TTCATAATCGATAGTCGAAGATATCCCTT
1 TTCATAATCGATGGTCGAA-CTATCCCTT
67308223 TTCAT
1 TTCAT
67308228 TGGTCAATGA
Statistics
Matches: 213, Mismatches: 39, Indels: 36
0.74 0.14 0.12
Matches are distributed among these distances:
27 1 0.00
28 4 0.02
29 118 0.55
30 84 0.39
31 6 0.03
ACGTcount: A:0.24, C:0.25, G:0.13, T:0.38
Consensus pattern (28 bp):
TTCATAATCGATGGTCGAACTATCCCTT
Found at i:67308057 original size:88 final size:88
Alignment explanation
Indices: 67307908--67308227 Score: 455
Period size: 88 Copynumber: 3.6 Consensus size: 88
67307898 AGTGTAATCA
* ** *
67307908 TGATGGTCGTCACCATCGCACTTCATAATCGATAGCCGAAGCTATCCCTTTTCATAATTCGATGG
1 TGATGGTCGTCACCATCCCTTTTCATAATCGATAGTCGAAGCTATCCCTTTTCATAATTCGATGG
*
67307973 TCATCACCATCCCTTTTCATAGT
66 TCGTCACCATCCCTTTTCATAGT
* ** *
67307996 TGATGGTCATCACCATCCCTTTTCATAATTAATAGTCGAAGCTATCCCCTTTT-AAAATTCGATG
1 TGATGGTCGTCACCATCCCTTTTCATAATCGATAGTCGAAGCTAT-CCCTTTTCATAATTCGATG
67308060 GTCGTCACCATCCCCTTTTCATAGT
65 GTCGTCACCAT-CCCTTTTCATAGT
*
67308085 TGATGGTCGTCACCATCCCTTTTCATAATTGATAG-CTGAAGCTATCCCTTTTCATAATTCGATG
1 TGATGGTCGTCACCATCCCTTTTCATAATCGATAGTC-GAAGCTATCCCTTTTCATAATTCGATG
* *
67308149 GTCGTCACTATTCCTTTTCATAGT
65 GTCGTCACCATCCCTTTTCATAGT
* * * *
67308173 TGATGATCGTCATCATCTCTTTTCATAATCGATAGTCGAAGATATCCCTTTTCAT
1 TGATGGTCGTCACCATCCCTTTTCATAATCGATAGTCGAAGCTATCCCTTTTCAT
67308228 TGGTCAATGA
Statistics
Matches: 208, Mismatches: 19, Indels: 10
0.88 0.08 0.04
Matches are distributed among these distances:
88 126 0.61
89 82 0.39
ACGTcount: A:0.24, C:0.26, G:0.14, T:0.37
Consensus pattern (88 bp):
TGATGGTCGTCACCATCCCTTTTCATAATCGATAGTCGAAGCTATCCCTTTTCATAATTCGATGG
TCGTCACCATCCCTTTTCATAGT
Found at i:67308176 original size:59 final size:57
Alignment explanation
Indices: 67307908--67308176 Score: 204
Period size: 59 Copynumber: 4.6 Consensus size: 57
67307898 AGTGTAATCA
* ** * * *
67307908 TGATGGTCGTCACCATCGCACTTCATAATCGATAGCCGAAGCTATCCCTTTTCATAAT
1 TGATGGTCGTCACCATCCCTTTTCATAATTGATAGCTGAA-CCATCCCTTTTCATAAT
* * * *
67307966 TCGATGGTCATCACCATCCCTTTTCATAGTTGATGGTCAT-CACCATCCCTTTTCATAAT
1 T-GATGGTCGTCACCATCCCTTTTCATAATTGATAG-C-TGAACCATCCCTTTTCATAAT
* * * * * * * *
67308025 TAATAGTCG-AAGCTATCCCCTTTT-AAAATTCGAT-GGTCGTCACCATCCCCTTTTCATAGT
1 TGATGGTCGTCA-CCAT-CCCTTTTCATAATT-GATAGCT-G-AACCAT-CCCTTTTCATAAT
*
67308085 TGATGGTCGTCACCATCCCTTTTCATAATTGATAGCTGAAGCTATCCCTTTTCATAAT
1 TGATGGTCGTCACCATCCCTTTTCATAATTGATAGCTGAA-CCATCCCTTTTCATAAT
* * *
67308143 TCGATGGTCGTCACTATTCCTTTTCATAGTTGAT
1 T-GATGGTCGTCACCATCCCTTTTCATAATTGAT
67308177 GATCGTCATC
Statistics
Matches: 165, Mismatches: 31, Indels: 29
0.73 0.14 0.13
Matches are distributed among these distances:
56 1 0.01
57 1 0.01
58 28 0.17
59 103 0.62
60 31 0.19
61 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.14, T:0.36
Consensus pattern (57 bp):
TGATGGTCGTCACCATCCCTTTTCATAATTGATAGCTGAACCATCCCTTTTCATAAT
Found at i:67308195 original size:59 final size:59
Alignment explanation
Indices: 67307951--67308210 Score: 237
Period size: 59 Copynumber: 4.4 Consensus size: 59
67307941 AGCCGAAGCT
* * * *
67307951 ATCCCTTTTCATAATTCGATGGTCATCACCATCCCTTTTCATAGTTGATGGTCATCACC
1 ATCCCTTTTCATAATTCGATGGTCGTCACCATCCCTTTTCATAATTGATGATCGTCACC
* * * * * *
67308010 ATCCCTTTTCATAATT-AATAGTCG-AAGCTATCCCCTTTT-AAAATTCGATGGTCGTCACC
1 ATCCCTTTTCATAATTCGATGGTCGTCA-CCAT-CCCTTTTCATAATT-GATGATCGTCACC
* * * *
67308069 ATCCCCTTTTCATAGTT-GATGGTCGTCACCATCCCTTTTCATAATTGAT-AGC-TGAAGCT
1 AT-CCCTTTTCATAATTCGATGGTCGTCACCATCCCTTTTCATAATTGATGATCGT-CA-CC
* * * *
67308128 ATCCCTTTTCATAATTCGATGGTCGTCACTATTCCTTTTCATAGTTGATGATCGTCATC
1 ATCCCTTTTCATAATTCGATGGTCGTCACCATCCCTTTTCATAATTGATGATCGTCACC
* *
67308187 ATCTCTTTTCATAA-TCGATAGTCG
1 ATCCCTTTTCATAATTCGATGGTCG
67308211 AAGATATCCC
Statistics
Matches: 162, Mismatches: 28, Indels: 23
0.76 0.13 0.11
Matches are distributed among these distances:
57 2 0.01
58 36 0.22
59 92 0.57
60 30 0.19
61 2 0.01
ACGTcount: A:0.23, C:0.25, G:0.13, T:0.38
Consensus pattern (59 bp):
ATCCCTTTTCATAATTCGATGGTCGTCACCATCCCTTTTCATAATTGATGATCGTCACC
Found at i:67310915 original size:20 final size:20
Alignment explanation
Indices: 67310886--67310940 Score: 101
Period size: 20 Copynumber: 2.8 Consensus size: 20
67310876 AATGCATCCC
*
67310886 ATCACAAACATCCTTGTCCT
1 ATCACGAACATCCTTGTCCT
67310906 ATCACGAACATCCTTGTCCT
1 ATCACGAACATCCTTGTCCT
67310926 ATCACGAACATCCTT
1 ATCACGAACATCCTT
67310941 CCTACATGTC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.29, C:0.35, G:0.07, T:0.29
Consensus pattern (20 bp):
ATCACGAACATCCTTGTCCT
Found at i:67313741 original size:52 final size:52
Alignment explanation
Indices: 67313679--67313781 Score: 170
Period size: 52 Copynumber: 2.0 Consensus size: 52
67313669 TTTCGAGGTG
* *
67313679 CACATCCTATAAACTTGATAGCAAAGGAGTTTGTAATTTTCTAGTTTTCATA
1 CACATCCTATAAACTTGATAGCAAAGGAGTTCGAAATTTTCTAGTTTTCATA
* *
67313731 CACATCCTATAAGCTTGATTGCAAAGGAGTTCGAAATTTTCTAGTTTTCAT
1 CACATCCTATAAACTTGATAGCAAAGGAGTTCGAAATTTTCTAGTTTTCAT
67313782 TTTGATGCCA
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 47 1.00
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.38
Consensus pattern (52 bp):
CACATCCTATAAACTTGATAGCAAAGGAGTTCGAAATTTTCTAGTTTTCATA
Found at i:67315526 original size:189 final size:191
Alignment explanation
Indices: 67315192--67315540 Score: 587
Period size: 189 Copynumber: 1.8 Consensus size: 191
67315182 AAAATTTGAA
* *
67315192 GAATAGCATTTTAACAATTCTTTAGCATCTAAGAAAATTGTTTAGATTATAAAATATTTTATTTC
1 GAATAGCATTTTAACAATTCTTTAGCATCTAAGAAAATTGTTTAAATTATAAAATATGTTATTTC
* * *
67315257 AAATCTCTTTTCACTTAAGACCTTCCTGAAAAATCTTCTTTCATTCTAATTTTACAATAAACAAA
66 AAATCTCTCTCCACTTAAGACCTTCCTGAAAAATCTTCTTTCATACTAATTTTACAATAAACAAA
*
67315322 GCCTATAAAGAGCAAGTCTTGAACTGAAAATTTGAAACTATGTTTGGTTCATGGAAATTTT
131 GCCTATAAAGAGCAAGTCTTGAAATGAAAATTTGAAACTATGTTTGGTTCATGGAAATTTT
*
67315383 GAATAGCATTTTAACAATTCTTTGGCATCTAAGAAAATTGTTTAAATTATAAAATATGTTATTTC
1 GAATAGCATTTTAACAATTCTTTAGCATCTAAGAAAATTGTTTAAATTATAAAATATGTTATTTC
* *
67315448 -AAT-T-TCTCCACTTTAAGACCTTTCTGAAAAATCTTCTTTCATACTAATTTTACAATAAAGAA
66 AAATCTCTCTCCAC-TTAAGACCTTCCTGAAAAATCTTCTTTCATACTAATTTTACAATAAACAA
67315510 AGCCTATAAAGAGCAAGTCTTGAAATGAAAA
130 AGCCTATAAAGAGCAAGTCTTGAAATGAAAA
67315541 GACGATAATG
Statistics
Matches: 148, Mismatches: 9, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
188 5 0.03
189 78 0.53
190 3 0.02
191 62 0.42
ACGTcount: A:0.38, C:0.14, G:0.10, T:0.38
Consensus pattern (191 bp):
GAATAGCATTTTAACAATTCTTTAGCATCTAAGAAAATTGTTTAAATTATAAAATATGTTATTTC
AAATCTCTCTCCACTTAAGACCTTCCTGAAAAATCTTCTTTCATACTAATTTTACAATAAACAAA
GCCTATAAAGAGCAAGTCTTGAAATGAAAATTTGAAACTATGTTTGGTTCATGGAAATTTT
Found at i:67318405 original size:12 final size:12
Alignment explanation
Indices: 67318388--67318440 Score: 56
Period size: 12 Copynumber: 4.3 Consensus size: 12
67318378 ATAGAGAGAA
67318388 AGGAGAGAGGAG
1 AGGAGAGAGGAG
67318400 AGGAGAGAGGAAG
1 AGGAGAGAGG-AG
*
67318413 AAGGAGAG-GGAA
1 -AGGAGAGAGGAG
67318425 AGGAG-GAGAGAG
1 AGGAGAGAG-GAG
67318437 AGGA
1 AGGA
67318441 AATGAAATGT
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
10 1 0.03
11 6 0.17
12 17 0.49
13 4 0.11
14 7 0.20
ACGTcount: A:0.45, C:0.00, G:0.55, T:0.00
Consensus pattern (12 bp):
AGGAGAGAGGAG
Found at i:67318407 original size:14 final size:14
Alignment explanation
Indices: 67318380--67318438 Score: 56
Period size: 14 Copynumber: 4.4 Consensus size: 14
67318370 GCGACGTCAT
67318380 AGAGAGAA-AGGAG
1 AGAGAGAAGAGGAG
67318393 AGAG-G-AGAGGAG
1 AGAGAGAAGAGGAG
67318405 AGAG-GAAGAAGGAG
1 AGAGAGAAG-AGGAG
*
67318419 AGGGA-AAGGAGGAG
1 AGAGAGAA-GAGGAG
67318433 AGAGAG
1 AGAGAG
67318439 GAAATGAAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
11 1 0.03
12 11 0.29
13 6 0.16
14 19 0.50
15 1 0.03
ACGTcount: A:0.47, C:0.00, G:0.53, T:0.00
Consensus pattern (14 bp):
AGAGAGAAGAGGAG
Found at i:67323771 original size:214 final size:213
Alignment explanation
Indices: 67323358--67323973 Score: 1013
Period size: 214 Copynumber: 2.9 Consensus size: 213
67323348 AGTCGAAGTA
* * * * **
67323358 AACAACATTATAAT-AAAAAAA-ATGAGTAAAAGTCCATAATACAATAGAAACCTACACCAGTCC
1 AACAATATTATAATAAAAAAAATATAAGCAAAAGTCCAAAATACAGCAGAAACCTACACCAGTCC
** * *
67323421 -CCAAAAAAAATGAACACAACAAAAGTTCAATTAACCAACAACAATAACAAACCAAACCAAACTA
66 AAAAAAAAAAAAGAACACAACAAAAGCTCAATTAACCAACAACAAT----AA-CAAACCAAACT-
*
67323485 ATAACATTATAACAATAACACATCAGTTCAAAAACCATTATAGAATAGTTTAAGTTTCTTCATGA
125 A-AAC-TAATAACAATAACACATCAGTTCAAAAACCATTATAGAATAGTTTAAGTTTCTTCATGA
67323550 GTCCAAATAAACAACAAAAACAATAC
188 GTCCAAATAAACAACAAAAACAATAC
67323576 AACAATATTATAATAAAAAAAATATAAGCAAAAGTCCAAAATACAGCAGAAACCTACACCAGTCC
1 AACAATATTATAATAAAAAAAATATAAGCAAAAGTCCAAAATACAGCAGAAACCTACACCAGTCC
67323641 AAAAAAAAAAAAAGAACACAACAAAAGCTCAATTAACCAACAACAATAACAAACCAAACTAAACT
66 -AAAAAAAAAAAAGAACACAACAAAAGCTCAATTAACCAACAACAATAACAAACCAAACTAAACT
67323706 AATAACAATAACACATCAGTTCAAAAACCATTATAGAATAGTTTAAGTTTCTTCATGAGTCCAAA
130 AATAACAATAACACATCAGTTCAAAAACCATTATAGAATAGTTTAAGTTTCTTCATGAGTCCAAA
67323771 TAAACAACAAAAACAATAC
195 TAAACAACAAAAACAATAC
67323790 AACAATATTATAATAAAAAAAATATAAGCAAAAGTCCAAAATACAGCAGAAACCTACACCAGTCC
1 AACAATATTATAATAAAAAAAATATAAGCAAAAGTCCAAAATACAGCAGAAACCTACACCAGT-C
67323855 CAAAAAAAAAAAAGAACACAACAAAAGCTCAATTAACCAACAACAATAACAAACCAAACTAAACT
65 CAAAAAAAAAAAAGAACACAACAAAAGCTCAATTAACCAACAACAATAACAAACCAAACTAAACT
*
67323920 AATAACAATAACACATCAGTTCAAAAACCATTATAGAATAGTTTAACTTTCTTC
130 AATAACAATAACACATCAGTTCAAAAACCATTATAGAATAGTTTAAGTTTCTTC
67323974 TTGTGCTTCA
Statistics
Matches: 381, Mismatches: 12, Indels: 14
0.94 0.03 0.03
Matches are distributed among these distances:
214 264 0.69
215 5 0.01
216 1 0.00
217 11 0.03
218 15 0.04
219 7 0.02
220 37 0.10
222 41 0.11
ACGTcount: A:0.55, C:0.20, G:0.06, T:0.19
Consensus pattern (213 bp):
AACAATATTATAATAAAAAAAATATAAGCAAAAGTCCAAAATACAGCAGAAACCTACACCAGTCC
AAAAAAAAAAAAGAACACAACAAAAGCTCAATTAACCAACAACAATAACAAACCAAACTAAACTA
ATAACAATAACACATCAGTTCAAAAACCATTATAGAATAGTTTAAGTTTCTTCATGAGTCCAAAT
AAACAACAAAAACAATAC
Found at i:67324527 original size:34 final size:34
Alignment explanation
Indices: 67324484--67324549 Score: 132
Period size: 34 Copynumber: 1.9 Consensus size: 34
67324474 TTCCACCACT
67324484 ATAGTAAATCAAATGAACTTGAATTGTTTACTCA
1 ATAGTAAATCAAATGAACTTGAATTGTTTACTCA
67324518 ATAGTAAATCAAATGAACTTGAATTGTTTACT
1 ATAGTAAATCAAATGAACTTGAATTGTTTACT
67324550 TCTTCATCCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.41, C:0.11, G:0.12, T:0.36
Consensus pattern (34 bp):
ATAGTAAATCAAATGAACTTGAATTGTTTACTCA
Found at i:67327257 original size:49 final size:49
Alignment explanation
Indices: 67327197--67327451 Score: 366
Period size: 49 Copynumber: 5.4 Consensus size: 49
67327187 TACATATGTG
* * * *
67327197 TGTGATAAGGCCGAATGACCAATGCGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
67327246 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
* *
67327295 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAA--G--TG--TA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
67327338 --TG-TAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
67327384 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
67327433 TGTGATAAGGCCTAATGGC
1 TGTGATAAGGCCTAATGGC
67327452 TAATGTAAAA
Statistics
Matches: 189, Mismatches: 8, Indels: 18
0.88 0.04 0.08
Matches are distributed among these distances:
40 32 0.17
41 2 0.01
42 1 0.01
43 2 0.01
44 2 0.01
45 2 0.01
46 2 0.01
47 1 0.01
48 2 0.01
49 143 0.76
ACGTcount: A:0.29, C:0.09, G:0.33, T:0.29
Consensus pattern (49 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
Found at i:67327346 original size:40 final size:40
Alignment explanation
Indices: 67327302--67327430 Score: 177
Period size: 40 Copynumber: 3.0 Consensus size: 40
67327292 ATATGTGATG
67327302 AGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTA
1 AGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTA
67327342 AGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATA
1 AGGCCTAATGGCCGATGTGGTGAATGTGAAA--G--TG--TA--TG-TA
67327391 AGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTA
1 AGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTA
67327431 TATGTGATAA
Statistics
Matches: 80, Mismatches: 0, Indels: 18
0.82 0.00 0.18
Matches are distributed among these distances:
40 33 0.41
41 2 0.03
42 1 0.01
43 2 0.03
44 2 0.03
45 2 0.03
46 2 0.03
47 1 0.01
48 2 0.03
49 33 0.41
ACGTcount: A:0.28, C:0.09, G:0.34, T:0.29
Consensus pattern (40 bp):
AGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTA
Found at i:67327381 original size:89 final size:89
Alignment explanation
Indices: 67327251--67327430 Score: 333
Period size: 89 Copynumber: 2.0 Consensus size: 89
67327241 GTATATGTGA
*
67327251 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATAAGGCCTAATGGCCG
67327316 ATGTGGTGAATGTGAAAGTGTATG
66 ATGTGGTGAATGTGAAAGTGTATG
* *
67327340 TAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATAAGGCCTAATGGCCG
67327405 ATGTGGTGAATGTGAAAGTGTATG
66 ATGTGGTGAATGTGAAAGTGTATG
67327429 TA
1 TA
67327431 TATGTGATAA
Statistics
Matches: 88, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
89 88 1.00
ACGTcount: A:0.28, C:0.09, G:0.34, T:0.29
Consensus pattern (89 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATAAGGCCTAATGGCCG
ATGTGGTGAATGTGAAAGTGTATG
Found at i:67327603 original size:37 final size:37
Alignment explanation
Indices: 67327553--67327637 Score: 152
Period size: 37 Copynumber: 2.3 Consensus size: 37
67327543 GGAATATGTT
*
67327553 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
67327590 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
67327627 CCGGGTAAGAC
1 CCGGGTAAGAC
67327638 TTCTTTTATA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.25, C:0.20, G:0.34, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:67330949 original size:158 final size:158
Alignment explanation
Indices: 67330776--67331099 Score: 551
Period size: 158 Copynumber: 2.1 Consensus size: 158
67330766 AAATCCCCTG
* *
67330776 AACCCCCATACTGCTGTAGGTTTTTTCTTCTTCAATCATTGAAGAAAAATTAGGTAATTCATAAG
1 AACCCCTATACTGCTGTAGGTTTTTTCTTCTTCAATCATTGAAGAAAAATTAGCTAATTCATAAG
67330841 GATAAAAATCATAAGAGAATTTACTAATTACAACTTGAACCAATAATAAAAAATTAATTAACTAA
66 GATAAAAATCATAAGAGAATTTACTAATTACAACTTGAACCAATAATAAAAAATTAATTAACTAA
*
67330906 GTTTTAAAAAAAATTCTTATTAATTAGTA
131 GTTTT-AAAAAAATTCTTATAAATTAGTA
*
67330935 AACCCCTA-ACTGCTGTAGGTTTTTTCTTCTTCAATCATTGAAGAAAAATTAGCTAATTCATTAG
1 AACCCCTATACTGCTGTAGGTTTTTTCTTCTTCAATCATTGAAGAAAAATTAGCTAATTCATAAG
* * * * *
67330999 GATAAAAATCATACGAGAATTTACTAATTATAACTTGAACCAGTAATACAAAATTACTTAACTAA
66 GATAAAAATCATAAGAGAATTTACTAATTACAACTTGAACCAATAATAAAAAATTAATTAACTAA
67331064 GTTTTAAAAAAATTCTTATAAATTAGTA
131 GTTTTAAAAAAATTCTTATAAATTAGTA
67331092 AACCCCTA
1 AACCCCTA
67331100 GGAAACAGTA
Statistics
Matches: 156, Mismatches: 9, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
157 30 0.19
158 119 0.76
159 7 0.04
ACGTcount: A:0.43, C:0.14, G:0.09, T:0.34
Consensus pattern (158 bp):
AACCCCTATACTGCTGTAGGTTTTTTCTTCTTCAATCATTGAAGAAAAATTAGCTAATTCATAAG
GATAAAAATCATAAGAGAATTTACTAATTACAACTTGAACCAATAATAAAAAATTAATTAACTAA
GTTTTAAAAAAATTCTTATAAATTAGTA
Found at i:67341148 original size:93 final size:93
Alignment explanation
Indices: 67341036--67341207 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
67341026 CGCCCATAAG
67341036 CGAACTCGGACTCAACTCAACGAGCTCAGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
67341100 AACGAGCTCGGATGCCTAGTTACATCTCA
65 AACGAGCTCGGATGCCTAGTTACATCTCA
*
67341129 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
67341194 ACGAGTTCGGATGC
66 ACGAGCTCGGATGC
67341208 TCAACCATCC
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.20
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:67341204 original size:46 final size:46
Alignment explanation
Indices: 67341029--67341204 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
67341019 TGTAACCCGC
67341029 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCAT
* *
67341075 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCGCAT
* *
67341125 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
67341168 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
67341205 TGCTCAACCA
Statistics
Matches: 112, Mismatches: 8, Indels: 20
0.80 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 62 0.55
47 28 0.25
48 2 0.02
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:67344642 original size:16 final size:16
Alignment explanation
Indices: 67344621--67344651 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
67344611 TGAATGAATT
67344621 TCTTGAATTGATGAGC
1 TCTTGAATTGATGAGC
67344637 TCTTGAATTGATGAG
1 TCTTGAATTGATGAG
67344652 ATCATCTAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.26, C:0.10, G:0.26, T:0.39
Consensus pattern (16 bp):
TCTTGAATTGATGAGC
Found at i:67355141 original size:53 final size:53
Alignment explanation
Indices: 67355061--67355165 Score: 147
Period size: 53 Copynumber: 2.0 Consensus size: 53
67355051 ATAAACTACA
* * * *
67355061 ATAAGGCAAAGATCCCATGTAAGACCATGCCAAGACATGACAATGGTGAGTTC
1 ATAAGGCAAAGATACCACGTAAGACCATGCCAAGACATGAAAATGGTAAGTTC
* * *
67355114 ATAAGGTAAGGATACCACGTAAGACCATGTCAAGACATGAAAATGGTAAGTT
1 ATAAGGCAAAGATACCACGTAAGACCATGCCAAGACATGAAAATGGTAAGTT
67355166 TAAAAAGGAA
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
53 45 1.00
ACGTcount: A:0.40, C:0.17, G:0.23, T:0.20
Consensus pattern (53 bp):
ATAAGGCAAAGATACCACGTAAGACCATGCCAAGACATGAAAATGGTAAGTTC
Found at i:67357060 original size:49 final size:49
Alignment explanation
Indices: 67356993--67357224 Score: 275
Period size: 49 Copynumber: 4.7 Consensus size: 49
67356983 CTGGTACGCA
* *
67356993 TAGTAGCCTACACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACG
* * * ** * *
67357042 TAGTATCCTGCACATAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACC-AATTATCCGGTACACG
* * * ** *
67357092 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTATGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-CCAA-TTATCCGGTACACG
* *
67357143 TAGTAGCCTACACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACG
*
67357192 TAGTAGTCTGCACTTAGTACTACACATGTGACC
1 TAGTAGCCTGCACTTAGTACTACACATGTGACC
67357225 TCACAATAGA
Statistics
Matches: 150, Mismatches: 30, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
49 68 0.45
50 46 0.31
51 36 0.24
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACG
Found at i:67357208 original size:100 final size:99
Alignment explanation
Indices: 67356993--67357224 Score: 277
Period size: 100 Copynumber: 2.3 Consensus size: 99
67356983 CTGGTACGCA
* * * * *
67356993 TAGTAGCCTACACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTATCCTGCACATA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACATAGTAGCCTACACATA
* *
67357058 GTACTACACACGTGACCTAACCATCTGATACACG
66 GTACTACACACGCGACCTAACCATCCGATACACG
* * * ** *
67357092 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTATGCATAGTAGCCTACACT
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-CCAA-TTATCCGGTACACATAGTAGCCTACACA
* ** *
67357157 TAGTACTACACATGCGACC-AATTATCCGGTACACG
64 TAGTACTACACACGCGACCTAACCATCCGATACACG
*
67357192 TAGTAGTCTGCACTTAGTACTACACATGTGACC
1 TAGTAGCCTGCACTTAGTACTACACATGTGACC
67357225 TCACAATAGA
Statistics
Matches: 111, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
99 29 0.26
100 44 0.40
101 38 0.34
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.26
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACATAGTAGCCTACACATA
GTACTACACACGCGACCTAACCATCCGATACACG
Found at i:67380432 original size:93 final size:93
Alignment explanation
Indices: 67380323--67380493 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
67380313 GCCCATAAGT
* * *
67380323 GAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
67380388 CGAGTTCGGATGCCTAGTTACATCTCTC
66 CGAGTTCGGATGCCTAGTTACATCTCTC
*
67380416 GAACTCAAACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
67380481 CGAGTTCGGATGC
66 CGAGTTCGGATGC
67380494 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCAAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCTC
Found at i:67380490 original size:46 final size:46
Alignment explanation
Indices: 67380315--67380490 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
67380305 TGTAACCAGC
* * *
67380315 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
67380361 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTCGC-A--T
* *** *
67380407 ACATCTCTCGAACTCAAACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
*
67380454 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
67380491 TGCTCAACCA
Statistics
Matches: 106, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 66 0.62
47 31 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:67389767 original size:93 final size:93
Alignment explanation
Indices: 67389655--67389826 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
67389645 GCCCATAAGT
* *
67389655 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
67389720 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
67389748 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
67389813 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
67389827 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:67389822 original size:46 final size:46
Alignment explanation
Indices: 67389647--67389822 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
67389637 TGTAACCCGC
* * *
67389647 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
67389693 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
67389743 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
67389786 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
67389823 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:67392251 original size:30 final size:30
Alignment explanation
Indices: 67392207--67392295 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
67392197 CAAAGATAAC
67392207 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
67392236 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
67392266 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
67392296 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:67392255 original size:15 final size:15
Alignment explanation
Indices: 67392207--67392286 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
67392197 CAAAGATAAC
*
67392207 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
67392221 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
67392236 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
67392251 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
67392266 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
67392281 AAGAAA
1 AAGAAA
67392287 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:67392295 original size:15 final size:15
Alignment explanation
Indices: 67392218--67392295 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
67392208 AGAAAACCGA
67392218 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
67392233 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
67392247 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
67392262 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
67392278 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
67392293 ATA
1 ATA
67392296 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:67395359 original size:93 final size:93
Alignment explanation
Indices: 67395247--67395418 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
67395237 GCCCATAAGT
* *
67395247 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
67395312 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
67395340 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
67395405 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
67395419 CAAATATCCA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:67395414 original size:46 final size:46
Alignment explanation
Indices: 67395239--67395414 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
67395229 TGTAACCCGC
* * *
67395239 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
67395285 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
67395335 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
67395378 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
67395415 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:67397840 original size:30 final size:30
Alignment explanation
Indices: 67397796--67397884 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
67397786 CAAAGATAAC
67397796 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
67397825 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
67397855 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
67397885 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:67397844 original size:15 final size:15
Alignment explanation
Indices: 67397796--67397875 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
67397786 CAAAGATAAC
*
67397796 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
67397810 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
67397825 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
67397840 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
67397855 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
67397870 AAGAAA
1 AAGAAA
67397876 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:67397884 original size:15 final size:15
Alignment explanation
Indices: 67397807--67397884 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
67397797 AGAAAACCGA
67397807 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
67397822 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
67397836 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
67397851 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
67397867 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
67397882 ATA
1 ATA
67397885 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:67400947 original size:93 final size:93
Alignment explanation
Indices: 67400835--67401006 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
67400825 GCCCATAAGT
* *
67400835 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
67400900 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
67400928 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
67400993 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
67401007 CAAATATCCA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:67401002 original size:46 final size:46
Alignment explanation
Indices: 67400827--67401002 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
67400817 TGTAACCCGC
* * *
67400827 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
67400873 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
67400923 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
67400966 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
67401003 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Done.