Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 214 of 318
Found at i:67402497 original size:46 final size:46
Alignment explanation
Indices: 67402442--67402948 Score: 694
Period size: 46 Copynumber: 11.0 Consensus size: 46
67402432 AGTGTGCTCT
*
67402442 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCATC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
67402488 CTAATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
67402534 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
67402580 CTGATATGAACTGTGTAAGAACATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* **
67402626 GTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * ** *
67402672 GTGACATGAAAAGAATAAGACTATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
67402718 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
67402764 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* ** * *
67402810 GTGATATGAAATGAATAA-ACCATGGTTGAAACATACCATGGCAAT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * ** *
67402855 TTGACATGAAAAGAATAAAACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * *
67402901 ATGATA-GAAAATGAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATG--T--GTAAGACCATGGTTGAAAGATACCATGGCA
67402949 TCATGTCAAA
Statistics
Matches: 415, Mismatches: 40, Indels: 8
0.90 0.09 0.02
Matches are distributed among these distances:
45 40 0.10
46 350 0.84
50 25 0.06
ACGTcount: A:0.40, C:0.14, G:0.23, T:0.23
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:67404401 original size:21 final size:21
Alignment explanation
Indices: 67404376--67404416 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
67404366 TCACACGCCC
67404376 GTGTGGAAGGGTAACATGCCT
1 GTGTGGAAGGGTAACATGCCT
67404397 GTGTGGAAGGGTAACATGCC
1 GTGTGGAAGGGTAACATGCC
67404417 CATGTCCCAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.24, C:0.15, G:0.39, T:0.22
Consensus pattern (21 bp):
GTGTGGAAGGGTAACATGCCT
Found at i:67405612 original size:47 final size:47
Alignment explanation
Indices: 67405445--67405620 Score: 173
Period size: 47 Copynumber: 3.8 Consensus size: 47
67405435 TAAGGTGCCA
* ** *
67405445 ATGCCATGTCCCAGACATGGTCTTACACTTGTGCATATCTCAAGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCACATATCTCAAGCCG
* * * **
67405492 ATGCCATGTCCTAGATATGGTCTTACACT-G-ACACATCTTGTAGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCACATATC-TCAAGCCG
* * * *
67405538 GTG-CATGTCCCGGACAT-GTCTTACACTAGCACTTGTCTCAATGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCACATATCTCAA-GCCG
*
67405584 ATGCCATGTCCCAGACAT-GTCTTACACTAGCTCATAT
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCACATAT
67405621 ACATGACCCA
Statistics
Matches: 103, Mismatches: 21, Indels: 10
0.77 0.16 0.07
Matches are distributed among these distances:
44 10 0.10
45 19 0.18
46 18 0.17
47 56 0.54
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (47 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCACATATCTCAAGCCG
Found at i:67413345 original size:28 final size:29
Alignment explanation
Indices: 67413275--67413376 Score: 127
Period size: 28 Copynumber: 3.5 Consensus size: 29
67413265 TATAGTGAAT
*
67413275 CCGCACACTTAGTGCTATATACATTC-AGC
1 CCGCACACTTAGTGCTATATA-ATTCAAAC
*
67413304 TCGCACACTTAGTGCTATATAA-TCAAAC
1 CCGCACACTTAGTGCTATATAATTCAAAC
* * *
67413332 CCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATAA-TTCAAAC
67413362 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
67413377 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
27 2 0.03
28 22 0.34
29 20 0.31
30 20 0.31
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.27
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATATAATTCAAAC
Found at i:67415582 original size:96 final size:98
Alignment explanation
Indices: 67415387--67415712 Score: 275
Period size: 96 Copynumber: 3.4 Consensus size: 98
67415377 GGGTAAGGTA
*
67415387 CCGATGCCATGTCCCAGACATGGTCTTACACTGG--CACATATCTCAAGTCGATGCCATGTCCCA
1 CCGATGCCATGTCCCAGACAAGGTCTTACACTGGCTCACATATCTCAAGTCGATGCCATGTCCCA
* *
67415450 AACATGGTCTTACATTGACTATCATCATCGAGG
66 AACATGGTCTTACACTAACTATCATCATCGAGG
* *** *
67415483 CCGATGCCATGTCCTAGACAAGGTCTTACACTGGCTCTCACATAT-TTGTGTTGATGCCATGTCC
1 CCGATGCCATGTCCCAGACAAGGTCTTACACTGG--CTCACATATCTCAAGTCGATGCCATGTCC
* *
67415547 TAGACATGGTCTTACACTAAC-A-CATC-TCGTA-G
64 CAAACATGGTCTTACACTAACTATCATCATCG-AGG
* * * * * *
67415579 CCGATG-CATGTCCCAGAC-ATGTCTTACATTGGCTTAC--GTCTCGAGGCCGATG-CATGTCCC
1 CCGATGCCATGTCCCAGACAAGGTCTTACACTGGCTCACATATCTC-AAGTCGATGCCATGTCCC
* * * * * *
67415639 AGACAT-GTCTTACACTAGCTTTCGTC-TCAATG
65 AAACATGGTCTTACACTAACTATCATCATCGAGG
* * * * *
67415671 TCGATGCCATGTCCCAAACATGATCTTACACTGGCTCTCATA
1 CCGATGCCATGTCCCAGACAAGGTCTTACACTGGCTCACATA
67415713 ATGTGGCTGA
Statistics
Matches: 182, Mismatches: 34, Indels: 28
0.75 0.14 0.11
Matches are distributed among these distances:
90 13 0.07
91 15 0.08
92 20 0.11
93 11 0.06
94 25 0.14
95 11 0.06
96 42 0.23
97 5 0.03
98 1 0.01
99 32 0.18
100 7 0.04
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.29
Consensus pattern (98 bp):
CCGATGCCATGTCCCAGACAAGGTCTTACACTGGCTCACATATCTCAAGTCGATGCCATGTCCCA
AACATGGTCTTACACTAACTATCATCATCGAGG
Found at i:67415628 original size:46 final size:45
Alignment explanation
Indices: 67415387--67415748 Score: 198
Period size: 46 Copynumber: 7.7 Consensus size: 45
67415377 GGGTAAGGTA
* * *
67415387 CCGATGCCATGTCCCAGACATGGTCTTACACTGGC-ACATATCTC-AAG
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTC--GTCTCGAGG
* * * * *
67415434 TCGATGCCATGTCCCAAACATGGTCTTACATTGACTATCATCATCGAGG
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TCGTC-TCGAGG
* * * *
67415483 CCGATGCCATGTCCTAGACAAGGTCTTACACTGGC-TC-TCACATATTTGTG
1 CCGATG-CATGTCCCAGAC-ATGTCTTACACTGGCTTCGTCTC-GA---G-G
** * ** * *
67415533 TTGATGCCATGTCCTAGACATGGTCTTACACTAAC-ACATCTCGTA-G
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTCGTCTCG-AGG
*
67415579 CCGATGCATGTCCCAGACATGTCTTACATTGGCTTACGTCTCGAGG
1 CCGATGCATGTCCCAGACATGTCTTACACTGGCTT-CGTCTCGAGG
* * *
67415625 CCGATGCATGTCCCAGACATGTCTTACACTAGCTTTCGTCTCAATG
1 CCGATGCATGTCCCAGACATGTCTTACACTGGC-TTCGTCTCGAGG
* * * * *
67415671 TCGATGCCATGTCCCAAACATGATCTTACACTGGCTCTCATAAT-GTGG
1 CCGATG-CATGTCCCAGACATG-TCTTACACTGGCT-TCGT-CTCGAGG
*
67415719 CTGATGCATGTCCCAGACATGTCTTACACT
1 CCGATGCATGTCCCAGACATGTCTTACACT
67415749 AGCTCACATA
Statistics
Matches: 249, Mismatches: 45, Indels: 43
0.74 0.13 0.13
Matches are distributed among these distances:
44 10 0.04
45 15 0.06
46 68 0.27
47 67 0.27
48 21 0.08
49 33 0.13
50 31 0.12
51 4 0.02
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (45 bp):
CCGATGCATGTCCCAGACATGTCTTACACTGGCTTCGTCTCGAGG
Found at i:67415698 original size:94 final size:92
Alignment explanation
Indices: 67415580--67415752 Score: 242
Period size: 94 Copynumber: 1.9 Consensus size: 92
67415570 ATCTCGTAGC
* * * *
67415580 CGATGCATGTCCCAGACATGTCTTACATTGGCT-TACGT-CTCGAGGCCGATGCATGTCCCAGAC
1 CGATGCATGTCCCAAACATGTCTTACACTGGCTCT-CATAAT-GAGGCCGATGCATGTCCCAGAC
67415643 ATGTCTTACACTAGCTTTCGTCTCAATGT
64 ATGTCTTACACTAGCTTTCGTCTCAATGT
* *
67415672 CGATGCCATGTCCCAAACATGATCTTACACTGGCTCTCATAATGTGGCTGATGCATGTCCCAGAC
1 CGATG-CATGTCCCAAACATG-TCTTACACTGGCTCTCATAATGAGGCCGATGCATGTCCCAGAC
67415737 ATGTCTTACACTAGCT
64 ATGTCTTACACTAGCT
67415753 CACATATATG
Statistics
Matches: 71, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
92 5 0.07
93 14 0.20
94 50 0.70
95 2 0.03
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (92 bp):
CGATGCATGTCCCAAACATGTCTTACACTGGCTCTCATAATGAGGCCGATGCATGTCCCAGACAT
GTCTTACACTAGCTTTCGTCTCAATGT
Found at i:67418233 original size:42 final size:43
Alignment explanation
Indices: 67418154--67418245 Score: 116
Period size: 42 Copynumber: 2.2 Consensus size: 43
67418144 AAGACGTGGC
* *
67418154 CTTACATGTAATCAAATATCGATGCCACTGTCCCAGACACGGT
1 CTTACACGAAATCAAATATCGATGCCACTGTCCCAGACACGGT
* **
67418197 CTTACACGAAATCAAATA-CGATGCCAAC-GTCTCAGACGTGGT
1 CTTACACGAAATCAAATATCGATGCC-ACTGTCCCAGACACGGT
67418239 CTTACAC
1 CTTACAC
67418246 ATAAATCATA
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
42 25 0.58
43 18 0.42
ACGTcount: A:0.32, C:0.28, G:0.16, T:0.24
Consensus pattern (43 bp):
CTTACACGAAATCAAATATCGATGCCACTGTCCCAGACACGGT
Found at i:67418600 original size:16 final size:16
Alignment explanation
Indices: 67418579--67418612 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
67418569 GCTCTTGATC
67418579 TATATAAATTCAAATT
1 TATATAAATTCAAATT
67418595 TATATAAATTCAAATT
1 TATATAAATTCAAATT
67418611 TA
1 TA
67418613 ACTCTTTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (16 bp):
TATATAAATTCAAATT
Found at i:67420596 original size:26 final size:27
Alignment explanation
Indices: 67420523--67420666 Score: 120
Period size: 26 Copynumber: 5.4 Consensus size: 27
67420513 AGAAGTAGTC
* * *
67420523 TGGGCCTGATCCCAT-TACAGTAATAGT
1 TGGGCCT-AGCCCATATACAATAACAGT
* *
67420550 TGGGCCTAGCCCA-AAACAATATCAGCT
1 TGGGCCTAGCCCATATACAATAACAG-T
67420577 T-GGCCTAGCCCATATA-AATAACAGT
1 TGGGCCTAGCCCATATACAATAACAGT
* *
67420602 TGGGTCTAGCCCATAT-CAGTAACAGT
1 TGGGCCTAGCCCATATACAATAACAGT
* * *
67420628 TAGGTCGTAGCCCATAT-CGATAACAGT
1 T-GGGCCTAGCCCATATACAATAACAGT
67420655 TGGGCCTTAGCC
1 TGGGCC-TAGCC
67420667 TATAATAGTA
Statistics
Matches: 94, Mismatches: 16, Indels: 14
0.76 0.13 0.11
Matches are distributed among these distances:
25 2 0.02
26 55 0.59
27 37 0.39
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.25
Consensus pattern (27 bp):
TGGGCCTAGCCCATATACAATAACAGT
Found at i:67420665 original size:27 final size:26
Alignment explanation
Indices: 67420547--67420666 Score: 125
Period size: 26 Copynumber: 4.5 Consensus size: 26
67420537 TTACAGTAAT
* * *
67420547 AGTTGGGCCTAGCCCAAAACAATATC
1 AGTTGGGCCTAGCCCATATCAATAAC
*
67420573 AGCTT-GGCCTAGCCCATATAAATAAC
1 AG-TTGGGCCTAGCCCATATCAATAAC
* *
67420599 AGTTGGGTCTAGCCCATATCAGTAAC
1 AGTTGGGCCTAGCCCATATCAATAAC
* * *
67420625 AGTTAGGTCGTAGCCCATATCGATAAC
1 AGTT-GGGCCTAGCCCATATCAATAAC
67420652 AGTTGGGCCTTAGCC
1 AGTTGGGCC-TAGCC
67420667 TATAATAGTA
Statistics
Matches: 76, Mismatches: 14, Indels: 7
0.78 0.14 0.07
Matches are distributed among these distances:
25 2 0.03
26 46 0.61
27 28 0.37
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.24
Consensus pattern (26 bp):
AGTTGGGCCTAGCCCATATCAATAAC
Found at i:67420937 original size:26 final size:26
Alignment explanation
Indices: 67420874--67420940 Score: 98
Period size: 26 Copynumber: 2.6 Consensus size: 26
67420864 AGCACACCAA
* *
67420874 TATCGCAGCAAAGCTGTCAGTAATAG
1 TATCGCAGCAAGGCTGGCAGTAATAG
* *
67420900 TAACGTAGCAAGGCTGGCAGTAATAG
1 TATCGCAGCAAGGCTGGCAGTAATAG
67420926 TATCGCAGCAAGGCT
1 TATCGCAGCAAGGCT
67420941 ACTAATAACA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.33, C:0.19, G:0.27, T:0.21
Consensus pattern (26 bp):
TATCGCAGCAAGGCTGGCAGTAATAG
Found at i:67421106 original size:64 final size:64
Alignment explanation
Indices: 67420998--67421135 Score: 152
Period size: 64 Copynumber: 2.2 Consensus size: 64
67420988 ATAAGCAGGA
* * ** * *
67420998 TGGCACAAAGCCATCAGTAGTTGTAATATAATCGGTACAAAGCCATTTGTAGCTGTAATATGAT
1 TGGCACAGAGCCATCAGTAGTTGTAATATAATCGGCACAAAGCCATCAGTAACAGTAATATGAT
* * * *
67421062 TGGCACAGAGCCAT-TGATAGTTGTAGTATGATCGGCACAGAGCCATCAGTAACAGTAATATGAT
1 TGGCACAGAGCCATCAG-TAGTTGTAATATAATCGGCACAAAGCCATCAGTAACAGTAATATGAT
* *
67421126 CGGTACAGAG
1 TGGCACAGAG
67421136 ACATGATTAA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
63 1 0.02
64 60 0.98
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.26
Consensus pattern (64 bp):
TGGCACAGAGCCATCAGTAGTTGTAATATAATCGGCACAAAGCCATCAGTAACAGTAATATGAT
Found at i:67421134 original size:32 final size:32
Alignment explanation
Indices: 67420999--67421135 Score: 132
Period size: 32 Copynumber: 4.3 Consensus size: 32
67420989 TAAGCAGGAT
* * *
67420999 GGCACAAAGCCATCAGTAGTTGTAATATAATC
1 GGCACAGAGCCATCAGTAGCTGTAATATGATC
* * ** *
67421031 GGTACAAAGCCATTTGTAGCTGTAATATGATT
1 GGCACAGAGCCATCAGTAGCTGTAATATGATC
* * *
67421063 GGCACAGAGCCAT-TGATAGTTGTAGTATGATC
1 GGCACAGAGCCATCAG-TAGCTGTAATATGATC
* *
67421095 GGCACAGAGCCATCAGTAACAGTAATATGATC
1 GGCACAGAGCCATCAGTAGCTGTAATATGATC
*
67421127 GGTACAGAG
1 GGCACAGAG
67421136 ACATGATTAA
Statistics
Matches: 86, Mismatches: 17, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
31 2 0.02
32 83 0.97
33 1 0.01
ACGTcount: A:0.34, C:0.17, G:0.24, T:0.26
Consensus pattern (32 bp):
GGCACAGAGCCATCAGTAGCTGTAATATGATC
Found at i:67421194 original size:22 final size:22
Alignment explanation
Indices: 67421150--67421197 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
67421140 GATTAATATG
*
67421150 GCACGGAGCCATAATCGAGATA
1 GCACGGAGCCATAATAGAGATA
*
67421172 GCACGGAGCCATATTTAGA-ATA
1 GCACGGAGCCATA-ATAGAGATA
67421194 GCAC
1 GCAC
67421198 AGAGTGATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 20 0.87
23 3 0.13
ACGTcount: A:0.35, C:0.23, G:0.25, T:0.17
Consensus pattern (22 bp):
GCACGGAGCCATAATAGAGATA
Found at i:67421328 original size:42 final size:43
Alignment explanation
Indices: 67421269--67421360 Score: 105
Period size: 43 Copynumber: 2.2 Consensus size: 43
67421259 CTTGTGCGAC
**
67421269 CTTAACAGAAGAATCCAC-GTTGTCTCATGCGACCCGTGCAAA
1 CTTAACAGAAGAATCCACAGTCATCTCATGCGACCCGTGCAAA
* * * * * *
67421311 CTTAACAGAATAGTCCACAGTCATCTCGTGTGGCCCGTGCAAC
1 CTTAACAGAAGAATCCACAGTCATCTCATGCGACCCGTGCAAA
67421354 CTTAACA
1 CTTAACA
67421361 AAACAGTCAA
Statistics
Matches: 41, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
42 16 0.39
43 25 0.61
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.23
Consensus pattern (43 bp):
CTTAACAGAAGAATCCACAGTCATCTCATGCGACCCGTGCAAA
Found at i:67421585 original size:27 final size:27
Alignment explanation
Indices: 67421537--67421595 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
67421527 GGGTATTACA
*
67421537 GTCATTTTACCCCACGGGGGTAA-TCTG
1 GTCATTTTACCCCACGGAGGTAATTC-G
* *
67421564 GTCATTTTACCCTATGGAGGTAATTCG
1 GTCATTTTACCCCACGGAGGTAATTCG
67421591 GTCAT
1 GTCAT
67421596 CTAATCAGTT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 26 0.93
28 2 0.07
ACGTcount: A:0.20, C:0.22, G:0.24, T:0.34
Consensus pattern (27 bp):
GTCATTTTACCCCACGGAGGTAATTCG
Found at i:67422912 original size:32 final size:32
Alignment explanation
Indices: 67422876--67422963 Score: 104
Period size: 32 Copynumber: 2.8 Consensus size: 32
67422866 GAACCAGGAT
*
67422876 GGCACAAAGCCATCAGTTGCTGTAATATAATC
1 GGCACAAAGCCATCAGTAGCTGTAATATAATC
* * * *
67422908 GGCACAAAGCCATTAGTAGCTATACTATGATC
1 GGCACAAAGCCATCAGTAGCTGTAATATAATC
* * *
67422940 GACACAGAGCCATCGGTAGCTGTA
1 GGCACAAAGCCATCAGTAGCTGTA
67422964 GTGTGATGTA
Statistics
Matches: 46, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
32 46 1.00
ACGTcount: A:0.33, C:0.23, G:0.22, T:0.23
Consensus pattern (32 bp):
GGCACAAAGCCATCAGTAGCTGTAATATAATC
Found at i:67423088 original size:22 final size:22
Alignment explanation
Indices: 67423006--67423089 Score: 89
Period size: 22 Copynumber: 3.8 Consensus size: 22
67422996 ATATGATTGA
67423006 CACAGAGCCATGATCA-AGATGG
1 CACAGAGCCATGATCAGA-ATGG
* * *
67423028 CACGGAGCCATGATCGGGATGG
1 CACAGAGCCATGATCAGAATGG
**
67423050 CACAGAGCCATCTTCAGAATGG
1 CACAGAGCCATGATCAGAATGG
* *
67423072 CATAGAGCCATAATCAGA
1 CACAGAGCCATGATCAGA
67423090 TCAAGTGGCT
Statistics
Matches: 50, Mismatches: 11, Indels: 2
0.79 0.17 0.03
Matches are distributed among these distances:
22 50 1.00
ACGTcount: A:0.33, C:0.24, G:0.27, T:0.15
Consensus pattern (22 bp):
CACAGAGCCATGATCAGAATGG
Found at i:67423182 original size:43 final size:43
Alignment explanation
Indices: 67423135--67423249 Score: 158
Period size: 43 Copynumber: 2.7 Consensus size: 43
67423125 ATCTCGTGTG
* * *
67423135 ACCCGTGCGAGCTTAACAGAACAGTCCACAGTCGTCTCGCGCA
1 ACCCGTGCGACCTTAACAGAACAGTCCACAATCGTCTCACGCA
* * * * *
67423178 ACCCGTGCAACCTTAACAGAATAGTTCACAATCGTCTCATGCG
1 ACCCGTGCGACCTTAACAGAACAGTCCACAATCGTCTCACGCA
67423221 ACCCGTGCGACCTTAACAGAACAGTCCAC
1 ACCCGTGCGACCTTAACAGAACAGTCCAC
67423250 TTCCTCCATA
Statistics
Matches: 61, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 61 1.00
ACGTcount: A:0.29, C:0.34, G:0.19, T:0.18
Consensus pattern (43 bp):
ACCCGTGCGACCTTAACAGAACAGTCCACAATCGTCTCACGCA
Found at i:67423464 original size:27 final size:27
Alignment explanation
Indices: 67423415--67423466 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
67423405 GGGTATTACA
* **
67423415 GTCATTTTACCCTATGGGGGTAATTTG
1 GTCATTTTACCCAATGGAAGTAATTTG
*
67423442 GTCATTTTACCCAATTGAAGTAATT
1 GTCATTTTACCCAATGGAAGTAATT
67423467 CGATCATCTA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.25, C:0.15, G:0.19, T:0.40
Consensus pattern (27 bp):
GTCATTTTACCCAATGGAAGTAATTTG
Found at i:67423473 original size:27 final size:27
Alignment explanation
Indices: 67423416--67423473 Score: 62
Period size: 27 Copynumber: 2.1 Consensus size: 27
67423406 GGTATTACAG
* ** * *
67423416 TCATTTTACCCTATGGGGGTAATTTGG
1 TCATTTTACCCAATGGAAGTAATTCGA
*
67423443 TCATTTTACCCAATTGAAGTAATTCGA
1 TCATTTTACCCAATGGAAGTAATTCGA
67423470 TCAT
1 TCAT
67423474 CTAATCAGTT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.17, T:0.40
Consensus pattern (27 bp):
TCATTTTACCCAATGGAAGTAATTCGA
Found at i:67424807 original size:32 final size:32
Alignment explanation
Indices: 67424758--67424906 Score: 131
Period size: 32 Copynumber: 4.7 Consensus size: 32
67424748 AATCGATAGA
* *
67424758 AATAGGAT-GGCACAAAGCCATCAGTAGCTAT
1 AATATGATCGGCACAAAGCCATCAGTAGCTGT
* * * *
67424789 AATATAATCGGCACAAAGCCATTAATAGATGT
1 AATATGATCGGCACAAAGCCATCAGTAGCTGT
* * **
67424821 ACTATGATCGGCACAGAGCCATTGGTAGCTGT
1 AATATGATCGGCACAAAGCCATCAGTAGCTGT
* * * *
67424853 AGTATGATCGGTACACAGCCATCAGTA-ATGGT
1 AATATGATCGGCACAAAGCCATCAGTAGCT-GT
* *
67424885 AATATGATCGACACAGAGCCAT
1 AATATGATCGGCACAAAGCCAT
67424907 GCTCAAGATG
Statistics
Matches: 94, Mismatches: 22, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
31 7 0.07
32 87 0.93
ACGTcount: A:0.36, C:0.19, G:0.22, T:0.23
Consensus pattern (32 bp):
AATATGATCGGCACAAAGCCATCAGTAGCTGT
Found at i:67424873 original size:64 final size:64
Alignment explanation
Indices: 67424758--67424906 Score: 158
Period size: 64 Copynumber: 2.3 Consensus size: 64
67424748 AATCGATAGA
* * *
67424758 AATAGGAT-GGCACAAAGCCATCAGTAGCTATAATATAATCGGCACAAAGCCATTAATAGAT-GT
1 AATATGATCGGCACAGAGCCATCAGTAGCTATAATATAATCGGCACAAAGCCATCAATA-ATGGT
* ** * * * * * *
67424821 ACTATGATCGGCACAGAGCCATTGGTAGCTGTAGTATGATCGGTACACAGCCATCAGTAATGGT
1 AATATGATCGGCACAGAGCCATCAGTAGCTATAATATAATCGGCACAAAGCCATCAATAATGGT
*
67424885 AATATGATCGACACAGAGCCAT
1 AATATGATCGGCACAGAGCCAT
67424907 GCTCAAGATG
Statistics
Matches: 70, Mismatches: 14, Indels: 3
0.80 0.16 0.03
Matches are distributed among these distances:
63 8 0.11
64 62 0.89
ACGTcount: A:0.36, C:0.19, G:0.22, T:0.23
Consensus pattern (64 bp):
AATATGATCGGCACAGAGCCATCAGTAGCTATAATATAATCGGCACAAAGCCATCAATAATGGT
Found at i:67425137 original size:43 final size:43
Alignment explanation
Indices: 67425005--67425139 Score: 162
Period size: 43 Copynumber: 3.1 Consensus size: 43
67424995 CCGTCGGTAG
* *
67425005 GTCCACAGTTGTCTCGCGCAACTCGTGCGACCTTAACAGAACA
1 GTCCACAGTCGTCTCGTGCAACTCGTGCGACCTTAACAGAACA
* * ** * * * *
67425048 GTCCATAGTCGTCTTGTGTGACTCATGCAACATTAACAGAATA
1 GTCCACAGTCGTCTCGTGCAACTCGTGCGACCTTAACAGAACA
* *
67425091 GTCCACAGTCGTCTCGTGCAACCCGTGCGACCTTAATAGAACA
1 GTCCACAGTCGTCTCGTGCAACTCGTGCGACCTTAACAGAACA
67425134 GTCCAC
1 GTCCAC
67425140 TTCCTCTATA
Statistics
Matches: 72, Mismatches: 20, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
43 72 1.00
ACGTcount: A:0.27, C:0.30, G:0.20, T:0.24
Consensus pattern (43 bp):
GTCCACAGTCGTCTCGTGCAACTCGTGCGACCTTAACAGAACA
Found at i:67425338 original size:27 final size:27
Alignment explanation
Indices: 67425308--67425383 Score: 102
Period size: 27 Copynumber: 2.8 Consensus size: 27
67425298 TATTATAATT
*
67425308 ATTTTACCCCACAGGGGTAATTC-GATC
1 ATTTTACCCAACAGGGGTAATTCAG-TC
*
67425335 ATTTTA-CCATACGGGGGTAATTCAGTC
1 ATTTTACCCA-ACAGGGGTAATTCAGTC
67425362 ATTTTACCCAACAGGGGTAATT
1 ATTTTACCCAACAGGGGTAATT
67425384 TGGTTGTCTA
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
26 2 0.05
27 37 0.86
28 4 0.09
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.32
Consensus pattern (27 bp):
ATTTTACCCAACAGGGGTAATTCAGTC
Found at i:67426439 original size:27 final size:26
Alignment explanation
Indices: 67426408--67426498 Score: 83
Period size: 27 Copynumber: 3.4 Consensus size: 26
67426398 CAAATTACTG
*
67426408 AAATACCCTCGATTAGAAAAAATACCA
1 AAATACCCTAG-TTAGAAAAAATACCA
* * *
67426435 AAATACCCTAGTTTGTAAAATTACCA
1 AAATACCCTAGTTAGAAAAAATACCA
* * * *
67426461 AAATACCCCTAATTTGTAAAATTACCA
1 AAATA-CCCTAGTTAGAAAAAATACCA
67426488 AAATACTCCTA
1 AAATAC-CCTA
67426499 ATTTGTGAAA
Statistics
Matches: 57, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
26 18 0.32
27 39 0.68
ACGTcount: A:0.46, C:0.22, G:0.05, T:0.26
Consensus pattern (26 bp):
AAATACCCTAGTTAGAAAAAATACCA
Found at i:67426465 original size:53 final size:54
Alignment explanation
Indices: 67426399--67426526 Score: 161
Period size: 53 Copynumber: 2.4 Consensus size: 54
67426389 TTAGTTTACC
*
67426399 AAATTACTGAAATACCCTCGATTAGAAAAAATACCAAAATAC-CCTAGTTTGTA
1 AAATTACTGAAATACCCTCGATTAGAAAAAATACCAAAATACTCCTAATTTGTA
** * * * * *
67426452 AAATTACCAAAATACCC-CTAATTTGTAAAATTACCAAAATACTCCTAATTTGTG
1 AAATTACTGAAATACCCTC-GATTAGAAAAAATACCAAAATACTCCTAATTTGTA
67426506 AAATTACTGAAATACCCTCGA
1 AAATTACTGAAATACCCTCGA
67426527 CCTGTAAAAT
Statistics
Matches: 61, Mismatches: 11, Indels: 5
0.79 0.14 0.06
Matches are distributed among these distances:
52 1 0.02
53 34 0.56
54 25 0.41
55 1 0.02
ACGTcount: A:0.44, C:0.20, G:0.08, T:0.28
Consensus pattern (54 bp):
AAATTACTGAAATACCCTCGATTAGAAAAAATACCAAAATACTCCTAATTTGTA
Found at i:67426499 original size:27 final size:26
Alignment explanation
Indices: 67426425--67426595 Score: 135
Period size: 27 Copynumber: 6.4 Consensus size: 26
67426415 CTCGATTAGA
* *
67426425 AAAAATACCAAAATACCCTAGTTTGT
1 AAAATTACCAAAATACCCTAATTTGT
67426451 AAAATTACCAAAATACCCCTAATTTGT
1 AAAATTACCAAAATA-CCCTAATTTGT
67426478 AAAATTACCAAAATACTCCTAATTTGT
1 AAAATTACCAAAATAC-CCTAATTTGT
* ** * **
67426505 GAAATTACTGAAATACCCTCGACCTGT
1 AAAATTACCAAAATACCCT-AATTTGT
** * * *
67426532 AAAATTACTGAAATACCATCGACTTGT
1 AAAATTACCAAAATACCCT-AATTTGT
* * * *
67426559 AAAATTATCAAAGTACCCTCGATTTAT
1 AAAATTACCAAAATACCCT-AATTTGT
*
67426586 AGAATTACCA
1 AAAATTACCA
67426596 TTTTACCCTC
Statistics
Matches: 122, Mismatches: 20, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
26 18 0.15
27 104 0.85
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.29
Consensus pattern (26 bp):
AAAATTACCAAAATACCCTAATTTGT
Found at i:67426533 original size:54 final size:52
Alignment explanation
Indices: 67426399--67426595 Score: 166
Period size: 54 Copynumber: 3.7 Consensus size: 52
67426389 TTAGTTTACC
* * *
67426399 AAATTACTGAAATACCCTCGATTAGAAAAAATACCAAAATACCCTAGTTTGTA
1 AAATTACTGAAATACCCTCGATT-GTAAAATTACCAAAATACCCTAATTTGTA
** * *
67426452 AAATTACCAAAATACCC-CTAATTTGTAAAATTACCAAAATACTCCTAATTTGTG
1 AAATTACTGAAATACCCTC-GA-TTGTAAAATTACCAAAATAC-CCTAATTTGTA
* ** * * *
67426506 AAATTACTGAAATACCCTCGACCTGTAAAATTACTGAAATACCATCGACTTGTA
1 AAATTACTGAAATACCCTCGA-TTGTAAAATTACCAAAATACCCT-AATTTGTA
*
67426560 AAATTA-TCAAAGTACCCTCGATT-TATAGAATTACCA
1 AAATTACTGAAA-TACCCTCGATTGTA-A-AATTACCA
67426596 TTTTACCCTC
Statistics
Matches: 114, Mismatches: 22, Indels: 15
0.75 0.15 0.10
Matches are distributed among these distances:
52 3 0.03
53 40 0.35
54 70 0.61
55 1 0.01
ACGTcount: A:0.42, C:0.20, G:0.09, T:0.29
Consensus pattern (52 bp):
AAATTACTGAAATACCCTCGATTGTAAAATTACCAAAATACCCTAATTTGTA
Found at i:67426629 original size:27 final size:26
Alignment explanation
Indices: 67426506--67426630 Score: 88
Period size: 27 Copynumber: 4.6 Consensus size: 26
67426496 CTAATTTGTG
* *
67426506 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTA-TGAAATACCCTCGACTTATA
* *
67426533 AAATTACTGAAATACCATCGACTTGTA
1 AAATTA-TGAAATACCCTCGACTTATA
* *
67426560 AAATTATCAAAGTACCCTCGATTTATA
1 AAATTATGAAA-TACCCTCGACTTATA
* ** ** * *
67426587 GAATTACCATTTTACCCTCGATTTACA
1 AAATTATGA-AATACCCTCGACTTATA
67426614 AAATTATTGAAATACCC
1 AAATTA-TGAAATACCC
67426631 CTATAGGGTA
Statistics
Matches: 79, Mismatches: 16, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
26 4 0.05
27 74 0.94
28 1 0.01
ACGTcount: A:0.38, C:0.22, G:0.09, T:0.31
Consensus pattern (26 bp):
AAATTATGAAATACCCTCGACTTATA
Found at i:67426645 original size:27 final size:27
Alignment explanation
Indices: 67426615--67426861 Score: 311
Period size: 27 Copynumber: 9.2 Consensus size: 27
67426605 CGATTTACAA
* *
67426615 AATTATTGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
67426642 AATTATTGAAATACCCGTGTAAGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
67426669 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
67426696 AATTACTGAAATA-CCCTGTAAGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
67426722 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
67426749 AATTACTAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
67426776 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
67426803 AAATACT-AAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * *
67426829 AATTACCGAGATA-CCCTCGTGGGGTAA
1 AATTACTGAAATACCCCT-GTAGGGTAG
67426856 AATTAC
1 AATTAC
67426862 CATTTTCCCC
Statistics
Matches: 191, Mismatches: 26, Indels: 6
0.86 0.12 0.03
Matches are distributed among these distances:
26 50 0.26
27 141 0.74
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:67426754 original size:80 final size:79
Alignment explanation
Indices: 67426615--67426861 Score: 307
Period size: 80 Copynumber: 3.1 Consensus size: 79
67426605 CGATTTACAA
* * * * *
67426615 AATTATTGAAATACCCCTATAGGGTAGAATTATTGAAATACCCGTGTAAGGTAGAATTACCGAAA
1 AATTACTGAAATA-CCCTGTAGGGTAGAATTA-CGAAATACCCCTGTAGGGTAGAATTACCGAAA
67426680 TACCCCTGTAGGGTAG
64 TACCCCTGTAGGGTAG
* **
67426696 AATTACTGAAATACCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACTAAAAT
1 AATTACTGAAATACCCTGTAGGGTAGAATTA-CGAAATACCCCTGTAGGGTAGAATTACCGAAAT
67426761 ACCCCTGTAGGGTAG
65 ACCCCTGTAGGGTAG
* * * * *
67426776 AATTACCGAAATACCCTTGTAGGGTAGAAATACTAAATACCCCTATAGGGTAGAATTACCGAGAT
1 AATTACTGAAATACCC-TGTAGGGTAGAATTACGAAATACCCCTGTAGGGTAGAATTACCGAAAT
* *
67426841 A-CCCTCGTGGGGTAA
65 ACCCCT-GTAGGGTAG
67426856 AATTAC
1 AATTAC
67426862 CATTTTCCCC
Statistics
Matches: 145, Mismatches: 19, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
79 4 0.03
80 116 0.80
81 25 0.17
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (79 bp):
AATTACTGAAATACCCTGTAGGGTAGAATTACGAAATACCCCTGTAGGGTAGAATTACCGAAATA
CCCCTGTAGGGTAG
Found at i:67426761 original size:107 final size:107
Alignment explanation
Indices: 67426622--67426861 Score: 340
Period size: 107 Copynumber: 2.2 Consensus size: 107
67426612 CAAAATTATT
* * * *
67426622 GAAATACCCCTATAGGGTAGAATTATTGAAATACCCGTGTAAGGTAGAATTACCGAAATACCCCT
1 GAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCT
* *
67426687 GTAGGGTAGAATTACTGAAATA-CCCTGTAAGGTAGAATTACC
66 GTAGGGTAGAAATACT-AAATACCCCTATAAGGTAGAATTACC
* *
67426729 GAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTT
1 GAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCT
*
67426794 GTAGGGTAGAAATACTAAATACCCCTATAGGGTAGAATTACC
66 GTAGGGTAGAAATACTAAATACCCCTATAAGGTAGAATTACC
* * *
67426836 GAGATA-CCCTCGTGGGGTAAAATTAC
1 GAAATACCCCT-GTAGGGTAGAATTAC
67426862 CATTTTCCCC
Statistics
Matches: 119, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
106 9 0.08
107 110 0.92
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.25
Consensus pattern (107 bp):
GAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCT
GTAGGGTAGAAATACTAAATACCCCTATAAGGTAGAATTACC
Found at i:67426873 original size:53 final size:53
Alignment explanation
Indices: 67426650--67426861 Score: 234
Period size: 53 Copynumber: 4.0 Consensus size: 53
67426640 AGAATTATTG
* * * * *
67426650 AAATACCCGTGTAAGGTAGAATTACCGAAATACCC-CTGTAGGGTAGAATTACTG
1 AAATACCCCTATAGGGTAGAATTACCGAAATACCCTC-GTAGGGTAAAATTAC-A
* * *
67426704 AAATA-CCCTGTAAGGTAGAATTACCGAAATACCC-CTGTAGGGTAGAATTACTA
1 AAATACCCCTATAGGGTAGAATTACCGAAATACCCTC-GTAGGGTAAAATTAC-A
* * *
67426757 AAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAA-TACT
1 AAATACCCCTATAGGGTAGAATTACCGAAATACCCTCGTAGGGTA-AAATTACA
* *
67426810 AAATACCCCTATAGGGTAGAATTACCGAGATACCCTCGTGGGGTAAAATTAC
1 AAATACCCCTATAGGGTAGAATTACCGAAATACCCTCGTAGGGTAAAATTAC
67426862 CATTTTCCCC
Statistics
Matches: 144, Mismatches: 10, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
52 3 0.02
53 95 0.66
54 44 0.31
55 2 0.01
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.24
Consensus pattern (53 bp):
AAATACCCCTATAGGGTAGAATTACCGAAATACCCTCGTAGGGTAAAATTACA
Found at i:67427192 original size:20 final size:20
Alignment explanation
Indices: 67427145--67427192 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
67427135 GGAAGGCTGT
*
67427145 GTGCCGTTATTGTGGGCTTC
1 GTGCCGATATTGTGGGCTTC
* **
67427165 ATATCGATATTGTGGGCTTC
1 GTGCCGATATTGTGGGCTTC
67427185 GTGCCGAT
1 GTGCCGAT
67427193 TATAGACCCG
Statistics
Matches: 21, Mismatches: 7, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.12, C:0.19, G:0.31, T:0.38
Consensus pattern (20 bp):
GTGCCGATATTGTGGGCTTC
Found at i:67427455 original size:27 final size:26
Alignment explanation
Indices: 67427417--67427530 Score: 131
Period size: 27 Copynumber: 4.3 Consensus size: 26
67427407 TGCCACGTAT
* * *
67427417 TCTGTT-TAGTGGCTTTGCCACATTA
1 TCTGTTCTGGTGGCTCTGCCACAATA
*
67427442 TCTGATTCTGGTGGCTATGCCACAAATA
1 TCTG-TTCTGGTGGCTCTGCCAC-AATA
67427470 TCTGTTCTGGTGGCTCTGCCACAATA
1 TCTGTTCTGGTGGCTCTGCCACAATA
* *
67427496 TCTGTATCTGGTGACTCTGTCACAATA
1 TCTGT-TCTGGTGGCTCTGCCACAATA
*
67427523 TCTATTCT
1 TCTGTTCT
67427531 AGCAGTCATG
Statistics
Matches: 78, Mismatches: 7, Indels: 7
0.85 0.08 0.08
Matches are distributed among these distances:
25 4 0.05
26 14 0.18
27 53 0.68
28 7 0.09
ACGTcount: A:0.19, C:0.23, G:0.19, T:0.39
Consensus pattern (26 bp):
TCTGTTCTGGTGGCTCTGCCACAATA
Found at i:67427684 original size:25 final size:25
Alignment explanation
Indices: 67427656--67427716 Score: 86
Period size: 25 Copynumber: 2.4 Consensus size: 25
67427646 TCACATTCTA
* * *
67427656 ATTCTGATTTTGTTACCTGATACTG
1 ATTCTGATTCTGTCACCTAATACTG
*
67427681 ATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGTCACCTAATACTG
67427706 ATTCTGATTCT
1 ATTCTGATTCT
67427717 AATTCTGATT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.20, C:0.20, G:0.13, T:0.48
Consensus pattern (25 bp):
ATTCTGATTCTGTCACCTAATACTG
Found at i:67427687 original size:6 final size:6
Alignment explanation
Indices: 67427650--67427765 Score: 67
Period size: 6 Copynumber: 18.8 Consensus size: 6
67427640 TTGCATTCAC
* * * * *
67427650 ATTCTA ATTCTG ATTTTG -TTACCTG ATACTG ATTCTG ATTCTG -TCACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG
* * *
67427700 ATTCTG ATTCTG ATTCTA ATTCTG ATTCTG -TCACCTG ATTCCG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
* *
67427749 ATTCTC ATTTTG ATTCT
1 ATTCTG ATTCTG ATTCT
67427766 AGTTCTAATA
Statistics
Matches: 82, Mismatches: 19, Indels: 18
0.69 0.16 0.15
Matches are distributed among these distances:
5 4 0.05
6 68 0.83
7 7 0.09
8 3 0.04
ACGTcount: A:0.20, C:0.21, G:0.12, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:67427713 original size:37 final size:37
Alignment explanation
Indices: 67427672--67427765 Score: 134
Period size: 37 Copynumber: 2.5 Consensus size: 37
67427662 ATTTTGTTAC
* * *
67427672 CTGATACTGATTCTGATTCTGTCACCTAATTCTGATT
1 CTGATTCTAATTCTGATTCTGTCACCTAATTCCGATT
*
67427709 CTGATTCTAATTCTGATTCTGTCACCTGATTCCGATT
1 CTGATTCTAATTCTGATTCTGTCACCTAATTCCGATT
* *
67427746 CTGATTCTCATTTTGATTCT
1 CTGATTCTAATTCTGATTCT
67427766 AGTTCTAATA
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 51 1.00
ACGTcount: A:0.19, C:0.22, G:0.13, T:0.46
Consensus pattern (37 bp):
CTGATTCTAATTCTGATTCTGTCACCTAATTCCGATT
Found at i:67427720 original size:18 final size:18
Alignment explanation
Indices: 67427697--67427774 Score: 70
Period size: 18 Copynumber: 4.3 Consensus size: 18
67427687 ATTCTGTCAC
67427697 CTAATTCTGATTCTGATT
1 CTAATTCTGATTCTGATT
*
67427715 CTAATTCTGATTCTG-TCAC
1 CTAATTCTGATTCTGAT--T
* *
67427734 CTGATTCCGATTCTGATT
1 CTAATTCTGATTCTGATT
* *
67427752 CTCATTTTGATTCT-AGTT
1 CTAATTCTGATTCTGA-TT
67427770 CTAAT
1 CTAAT
67427775 AATTTTTCTT
Statistics
Matches: 48, Mismatches: 8, Indels: 8
0.75 0.12 0.12
Matches are distributed among these distances:
17 2 0.04
18 32 0.67
19 13 0.27
20 1 0.02
ACGTcount: A:0.21, C:0.21, G:0.12, T:0.47
Consensus pattern (18 bp):
CTAATTCTGATTCTGATT
Found at i:67434619 original size:86 final size:85
Alignment explanation
Indices: 67434459--67434632 Score: 188
Period size: 86 Copynumber: 2.0 Consensus size: 85
67434449 CAGAAAGTTC
* * * * *
67434459 ATACAATGCCAACATCTCAAATGTGGTCTTACATGTAATCAAATATCGATGCCACCGTCCTAGAC
1 ATACAATGCCAACATCCCAAATGTAGTCTTACACGTAATCAAATATCGATGCCAACGTCCCAGAC
* *
67434524 AAGGCCTTACATGAAATCAA
66 AAGGCCTTACACGAAAACAA
* * * *
67434544 ATACAATGCCAACTTCCCAGATGTAGTCTTCCACGTAGATCATAA-GTCGATGCCAACGTCCCAG
1 ATACAATGCCAACATCCCAAATGTAGTCTTACACGTA-ATCA-AATATCGATGCCAACGTCCCAG
*** *
67434608 ATGTGGTCTTACACGAAAACAA
64 ACAAGGCCTTACACGAAAACAA
67434630 ATA
1 ATA
67434633 TCAGATCTTA
Statistics
Matches: 72, Mismatches: 15, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
85 31 0.43
86 39 0.54
87 2 0.03
ACGTcount: A:0.35, C:0.25, G:0.16, T:0.24
Consensus pattern (85 bp):
ATACAATGCCAACATCCCAAATGTAGTCTTACACGTAATCAAATATCGATGCCAACGTCCCAGAC
AAGGCCTTACACGAAAACAA
Found at i:67446259 original size:12 final size:12
Alignment explanation
Indices: 67446242--67446269 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
67446232 AGCAAAACTG
67446242 GTTTTTAGCGGC
1 GTTTTTAGCGGC
67446254 GTTTTTAGCGGC
1 GTTTTTAGCGGC
67446266 GTTT
1 GTTT
67446270 GAATGAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.07, C:0.14, G:0.32, T:0.46
Consensus pattern (12 bp):
GTTTTTAGCGGC
Found at i:67446647 original size:41 final size:40
Alignment explanation
Indices: 67446590--67446692 Score: 122
Period size: 40 Copynumber: 2.6 Consensus size: 40
67446580 ATTTTAGTGG
*
67446590 CTTTAGCGGCACTTTTTTAAGAAACGCCGCTATAAG-TAC-AC
1 CTTTAGCGGCGCTTTTTTAA-AAACGCCGCTA-AAGCT-CGAC
* * *
67446631 CTTTAGCGGCGCTTTTTGAAAAACGCCGCTAATGCTCGAT
1 CTTTAGCGGCGCTTTTTTAAAAACGCCGCTAAAGCTCGAC
67446671 CTTTAGCGGCG-TTTTTTAAAAA
1 CTTTAGCGGCGCTTTTTTAAAAA
67446693 ACGGCACAAA
Statistics
Matches: 55, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
39 13 0.24
40 24 0.44
41 18 0.33
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.32
Consensus pattern (40 bp):
CTTTAGCGGCGCTTTTTTAAAAACGCCGCTAAAGCTCGAC
Found at i:67446940 original size:15 final size:15
Alignment explanation
Indices: 67446920--67446958 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
67446910 AGGTATATGT
67446920 ATTATGGGTTTAGGG
1 ATTATGGGTTTAGGG
*
67446935 ATTAT-GGTTTATGG
1 ATTATGGGTTTAGGG
*
67446949 TTTATGGGTT
1 ATTATGGGTT
67446959 AAAGGTTAGG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
14 12 0.57
15 9 0.43
ACGTcount: A:0.18, C:0.00, G:0.33, T:0.49
Consensus pattern (15 bp):
ATTATGGGTTTAGGG
Found at i:67447014 original size:22 final size:21
Alignment explanation
Indices: 67446962--67447048 Score: 61
Period size: 22 Copynumber: 4.1 Consensus size: 21
67446952 ATGGGTTAAA
*
67446962 GGTT-AGGGTTTAAGTTTTAG
1 GGTTAAGGGTTTAAGGTTTAG
**
67446982 GGTATCGGGGTTTAAGGTTTAGG
1 GGT-TAAGGGTTTAAGGTTTA-G
*
67447005 GGTTAAGGG-TTAAGGGTTTAT
1 GGTTAAGGGTTTAA-GGTTTAG
* * **
67447026 GTTTTATTGTTTAAGGTTTAG
1 GGTTAAGGGTTTAAGGTTTAG
67447047 GG
1 GG
67447049 GTTAGGAGCT
Statistics
Matches: 51, Mismatches: 11, Indels: 9
0.72 0.15 0.13
Matches are distributed among these distances:
20 3 0.06
21 17 0.33
22 27 0.53
23 4 0.08
ACGTcount: A:0.20, C:0.01, G:0.37, T:0.43
Consensus pattern (21 bp):
GGTTAAGGGTTTAAGGTTTAG
Found at i:67447073 original size:43 final size:43
Alignment explanation
Indices: 67446991--67447074 Score: 109
Period size: 43 Copynumber: 2.0 Consensus size: 43
67446981 GGGTATCGGG
* * *
67446991 GTTTAAGGTTTAGGGGTTAAGGGTTAAGGGTTTATGTTTTATT
1 GTTTAAGGTTTAGGGGTTAAGGGCTAAGGATTTAGGTTTTATT
67447034 GTTTAAGGTTTAGGGGTT-AGGAGCT-AGGAATTTAGGTTTTA
1 GTTTAAGGTTTAGGGGTTAAGG-GCTAAGG-ATTTAGGTTTTA
67447075 GATTAATTAG
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
42 6 0.17
43 30 0.83
ACGTcount: A:0.23, C:0.01, G:0.33, T:0.43
Consensus pattern (43 bp):
GTTTAAGGTTTAGGGGTTAAGGGCTAAGGATTTAGGTTTTATT
Found at i:67452999 original size:43 final size:42
Alignment explanation
Indices: 67452950--67453092 Score: 214
Period size: 42 Copynumber: 3.4 Consensus size: 42
67452940 AGGTCATATT
* *
67452950 TTTAGCGGCGTTTTCAGGAAAAGCGCCGCTAAAGGTCCTGGTC
1 TTTAGCGGCGTTTTTA-AAAAAGCGCCGCTAAAGGTCCTGGTC
* * *
67452993 TTTAGCGCCGTTTTTTAAAAAAGTGTCGCTAAAGGTCCTGGTC
1 TTTAGCGGCG-TTTTTAAAAAAGCGCCGCTAAAGGTCCTGGTC
67453036 TTTAGCGGCGTTTTTAAAAAAGCGCCGCTAAAGGTCCTGGTC
1 TTTAGCGGCGTTTTTAAAAAAGCGCCGCTAAAGGTCCTGGTC
*
67453078 TTTAGTGGCGTTTTT
1 TTTAGCGGCGTTTTT
67453093 TTCTAAAAAA
Statistics
Matches: 90, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
42 44 0.49
43 41 0.46
44 5 0.06
ACGTcount: A:0.21, C:0.20, G:0.27, T:0.33
Consensus pattern (42 bp):
TTTAGCGGCGTTTTTAAAAAAGCGCCGCTAAAGGTCCTGGTC
Found at i:67453452 original size:42 final size:42
Alignment explanation
Indices: 67453342--67453464 Score: 140
Period size: 42 Copynumber: 2.9 Consensus size: 42
67453332 TACCATACCA
* *** *
67453342 ATGCCATATCCCAGATATGGTCTTAGA-TGGGTTCTCATATTG
1 ATGCCATATCCCAGATATGGTCTTACACT-AAATCTCATACTG
* *
67453384 ATGCCAATAGCCCAGCTATGGTCTTACACTAAATCTCATACTG
1 ATGCC-ATATCCCAGATATGGTCTTACACTAAATCTCATACTG
* *
67453427 ATTCCATATCCCAGATATGGTCTTACACGAAATCTCAT
1 ATGCCATATCCCAGATATGGTCTTACACTAAATCTCAT
67453465 CTAACCCTAA
Statistics
Matches: 68, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
42 35 0.51
43 32 0.47
44 1 0.01
ACGTcount: A:0.28, C:0.24, G:0.15, T:0.32
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACTAAATCTCATACTG
Found at i:67457639 original size:30 final size:30
Alignment explanation
Indices: 67457592--67457651 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
67457582 TTCCCGAGCC
67457592 TAGGGGAAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGAAAAAGTGTAATTATGCAAAAGTT
* * *
67457622 TAGGGGCAAAA-TGGTAATTTTGCCAAAGTT
1 TAGGGGAAAAAGT-GTAATTATGCAAAAGTT
67457652 CGTATTAAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
29 1 0.04
30 25 0.96
ACGTcount: A:0.38, C:0.07, G:0.27, T:0.28
Consensus pattern (30 bp):
TAGGGGAAAAAGTGTAATTATGCAAAAGTT
Found at i:67458386 original size:49 final size:50
Alignment explanation
Indices: 67458296--67458540 Score: 280
Period size: 49 Copynumber: 4.9 Consensus size: 50
67458286 AGCTATTGTG
* *
67458296 AGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * *
67458346 -GGTCGCATGTGTAGTACTAAGTGCAGGCTATTATGCGTACCTGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * * * * *
67458396 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGAT-GTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
**
67458445 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
** * * *
67458495 -GGTTGCATGTGTAGTACTAAGTGCGGGCTACTATGCGTACCAGATA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
67458541 GCTTCGGCTA
Statistics
Matches: 160, Mismatches: 32, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
49 120 0.75
50 4 0.03
51 36 0.22
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:67458472 original size:100 final size:99
Alignment explanation
Indices: 67458299--67458527 Score: 295
Period size: 100 Copynumber: 2.3 Consensus size: 99
67458289 TATTGTGAGG
* * *
67458299 TCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGTCACATGTGTAGTACT
* *
67458364 AAGTGCAGGCTATTATGCGTACCT-GATAACTTCGA
66 AAGTGCAGGCTACTACGCGTA-CTGGATAA-TTCGA
* *
67458399 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGAT-GTTAGGTCACATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATT-GGTCACATGTGTAGTAC
* * *
67458463 TAAGTGCAGGCTACTACGTGTACTGGATAATTGGT
65 TAAGTGCAGGCTACTACGCGTACTGGATAATTCGA
*
67458498 TGCA--TGTGTAGTACTAAGTGCGGGCTACTA
1 T-CACGTGTGTAGTACTAAGTGCAGGCTACTA
67458528 TGCGTACCAG
Statistics
Matches: 115, Mismatches: 11, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
98 25 0.22
99 8 0.07
100 82 0.71
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (99 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGTCACATGTGTAGTACT
AAGTGCAGGCTACTACGCGTACTGGATAATTCGA
Found at i:67462154 original size:46 final size:46
Alignment explanation
Indices: 67462087--67462352 Score: 244
Period size: 46 Copynumber: 5.7 Consensus size: 46
67462077 AACCCGCCCC
* * *
67462087 TAAGTGAACTCGAACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCA
* * *
67462133 TAAGTGAACTTGGACTCAACTCAACAAGTTCGGATACCTAGTT-ACATCTCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--A-C--GTTCGCATC-CA
* *
67462184 -CA---AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCA
* *
67462226 TAGGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C--GTTCGCATCCA
* * *
67462274 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCA
*
67462319 TAGGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
67462353 TGCTCAACCA
Statistics
Matches: 177, Mismatches: 23, Indels: 40
0.74 0.10 0.17
Matches are distributed among these distances:
42 6 0.03
43 7 0.04
44 3 0.02
45 2 0.01
46 86 0.49
47 54 0.31
48 1 0.01
49 3 0.02
50 8 0.05
51 7 0.04
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCA
Found at i:67462202 original size:47 final size:47
Alignment explanation
Indices: 67462139--67462306 Score: 195
Period size: 47 Copynumber: 3.6 Consensus size: 47
67462129 TCCATAAGTG
* *
67462139 AACTTGGACTCAACTCAACAAGTTCGGATACCTAGTTACATCTCACA
1 AACTCGGACTCAACTCAACGAGTTCGGATACCTAGTTACATCTCACA
* *
67462186 AACTCGGACTCAACTCAACGAGTTCGG--A-C-A-TTCGCATC-CATA
1 AACTCGGACTCAACTCAACGAGTTCGGATACCTAGTT-ACATCTCACA
* *
67462228 GGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCACG
1 ----AACTCGGACTCAACTCAACGAGTTCGGATACCTAGTTACATCTCACA
67462279 AACTCGGACTCAACTCAACGAGTTCGGA
1 AACTCGGACTCAACTCAACGAGTTCGGA
67462307 CATTCGCATC
Statistics
Matches: 102, Mismatches: 8, Indels: 22
0.77 0.06 0.17
Matches are distributed among these distances:
42 5 0.05
43 5 0.05
44 1 0.01
45 1 0.01
46 27 0.26
47 53 0.52
49 1 0.01
50 5 0.05
51 4 0.04
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.23
Consensus pattern (47 bp):
AACTCGGACTCAACTCAACGAGTTCGGATACCTAGTTACATCTCACA
Found at i:67462354 original size:93 final size:93
Alignment explanation
Indices: 67462092--67462355 Score: 447
Period size: 93 Copynumber: 2.8 Consensus size: 93
67462082 GCCCCTAAGT
* * * * * *
67462092 GAACTCGAACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTTGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
* *
67462157 CAAGTTCGGATACCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
67462185 AAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
67462250 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
67462278 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
67462343 CGAGTTCGGATGC
66 CGAGTTCGGATGC
67462356 TCAACCATCC
Statistics
Matches: 161, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 161 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:67462809 original size:30 final size:30
Alignment explanation
Indices: 67462775--67462834 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
67462765 ATTTAATACG
67462775 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
67462805 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
67462835 GGCTTGGGAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:67464181 original size:15 final size:15
Alignment explanation
Indices: 67464163--67464195 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
67464153 TGGATTCTCG
67464163 TATCATGGATTTCTT
1 TATCATGGATTTCTT
*
67464178 TATCTTGGATTTCTT
1 TATCATGGATTTCTT
67464193 TAT
1 TAT
67464196 TATTGGCTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.18, C:0.12, G:0.12, T:0.58
Consensus pattern (15 bp):
TATCATGGATTTCTT
Found at i:67466294 original size:30 final size:29
Alignment explanation
Indices: 67466247--67466305 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 29
67466237 TTCCCGAGCC
67466247 TAGGGGAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGAAAAGTGTAATTATGCAAAAGTT
* *
67466276 TAGGGGCAAAA-TGGTAATTTTGCCAAAGTT
1 TAGGGG-AAAAGT-GTAATTATGCAAAAGTT
67466306 CGTATTAAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
29 7 0.27
30 19 0.73
ACGTcount: A:0.37, C:0.07, G:0.27, T:0.29
Consensus pattern (29 bp):
TAGGGGAAAAGTGTAATTATGCAAAAGTT
Found at i:67467081 original size:28 final size:27
Alignment explanation
Indices: 67467049--67467132 Score: 72
Period size: 28 Copynumber: 3.2 Consensus size: 27
67467039 AACTTCGATC
67467049 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGT-CAGGCTACT
* * *
67467077 ACGTGTATCAG-A-T-GGTTAGG-T-C-
1 ACGTGTGT-AGTACTAAGTCAGGCTACT
67467099 ACGTGTGTAGTACTAAGTACAGGCTACT
1 ACGTGTGTAGTACTAAGT-CAGGCTACT
67467127 ACGTGT
1 ACGTGT
67467133 ACCTGATAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.19
23 2 0.05
24 3 0.07
25 6 0.14
26 3 0.07
27 2 0.05
28 14 0.33
29 2 0.05
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.30
Consensus pattern (27 bp):
ACGTGTGTAGTACTAAGTCAGGCTACT
Found at i:67467184 original size:49 final size:50
Alignment explanation
Indices: 67466944--67467176 Score: 290
Period size: 49 Copynumber: 4.7 Consensus size: 50
67466934 AGCTATTGTG
* *
67466944 AGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
67466994 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * * * **
67467044 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
67467094 AGGTCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCTGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* *
67467144 -GGTCGCATGTGTAGTACTAAGTGCATGCTACTA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
67467177 TGCGTACCGA
Statistics
Matches: 155, Mismatches: 26, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
49 70 0.45
50 47 0.30
51 38 0.25
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:67467206 original size:101 final size:101
Alignment explanation
Indices: 67466947--67467206 Score: 260
Period size: 100 Copynumber: 2.6 Consensus size: 101
67466937 TATTGTGAGG
* * * * ** * *
67466947 TCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAATT-GGTCGCA-TGTGTAGTA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTATCAGATGCTTAGCTC-AAGTGTGTAGTA
* *
67467010 CTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGA
65 CTAAGTACAGGCTACTACGCGTACCTGATAACTTCGA
* * * * *
67467047 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTAC
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTATCAGATGCTTAGCTCAAGTGTGTAGTAC
* *
67467112 TAAGTACAGGCTACTACGTGTACCTGATAA-TT-GG
66 TAAGTACAGGCTACTACGCGTACCTGATAACTTCGA
* * * *
67467146 TCGCATGTGTAGTACTAAGTGCATGCTACTATGCGTA-CCGATAGCTTCAGCTACAAGTGTG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTATCAGAT-GCTT-AGCT-CAAGTGTG
67467207 GAAATGAGAA
Statistics
Matches: 136, Mismatches: 19, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
98 4 0.03
99 36 0.26
100 48 0.35
101 48 0.35
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (101 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTATCAGATGCTTAGCTCAAGTGTGTAGTAC
TAAGTACAGGCTACTACGCGTACCTGATAACTTCGA
Found at i:67471479 original size:20 final size:20
Alignment explanation
Indices: 67471454--67471491 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
67471444 GTTTATTCGC
*
67471454 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
67471474 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
67471492 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:67473152 original size:28 final size:28
Alignment explanation
Indices: 67473120--67473188 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
67473110 GCGTAGATCA
67473120 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
67473148 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
67473176 CGATA-TACCCCTA
1 CGAAATTACCCCTA
67473189 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:67479482 original size:20 final size:20
Alignment explanation
Indices: 67479457--67479494 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
67479447 GTTTATTCGC
*
67479457 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
67479477 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
67479495 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:67481155 original size:28 final size:28
Alignment explanation
Indices: 67481123--67481191 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
67481113 GCGTAGATCA
67481123 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
67481151 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
67481179 CGATA-TACCCCTA
1 CGAAATTACCCCTA
67481192 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:67483360 original size:27 final size:27
Alignment explanation
Indices: 67483326--67483389 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
67483316 GCACAAATCA
*
67483326 GTCA-TTTACCCTCGAGGGGTAAAATG
1 GTCATTTTACCCTAGAGGGGTAAAATG
* ***
67483352 GTCATTTTACCCTATAGGGGTATTTTG
1 GTCATTTTACCCTAGAGGGGTAAAATG
67483379 GTCATTTTACC
1 GTCATTTTACC
67483390 TGCCTTGGGG
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 4 0.12
27 28 0.88
ACGTcount: A:0.22, C:0.19, G:0.22, T:0.38
Consensus pattern (27 bp):
GTCATTTTACCCTAGAGGGGTAAAATG
Found at i:67488420 original size:28 final size:28
Alignment explanation
Indices: 67488380--67488449 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
67488370 ATAGTAAGTC
*
67488380 CGCACACTTAGTGCT-TAATAATCAAACT
1 CGCACACTTAGTGCTAT-ACAATCAAACT
*
67488408 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
67488436 CGCACACTTAGTGC
1 CGCACACTTAGTGC
67488450 CAATCTCATT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
28 38 0.97
29 1 0.03
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:67495206 original size:22 final size:22
Alignment explanation
Indices: 67495181--67495232 Score: 86
Period size: 22 Copynumber: 2.4 Consensus size: 22
67495171 CTCAATGCCA
* *
67495181 TAGATAGGATGGCTCAACATCG
1 TAGACAGGATGACTCAACATCG
67495203 TAGACAGGATGACTCAACATCG
1 TAGACAGGATGACTCAACATCG
67495225 TAGACAGG
1 TAGACAGG
67495233 GTGCGTAAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.35, C:0.19, G:0.27, T:0.19
Consensus pattern (22 bp):
TAGACAGGATGACTCAACATCG
Found at i:67495638 original size:27 final size:27
Alignment explanation
Indices: 67495616--67495700 Score: 102
Period size: 27 Copynumber: 3.1 Consensus size: 27
67495606 TCGTCATTCC
67495616 ACCATACAAGGGTATTACGGTCATTTT
1 ACCATACAAGGGTATTACGGTCATTTT
* *
67495643 ACACA-ACAAGGGCATTACAGTCATTTT
1 AC-CATACAAGGGTATTACGGTCATTTT
* *
67495670 A-CACTACAAGGGTATTTCGGTAATTTT
1 ACCA-TACAAGGGTATTACGGTCATTTT
67495697 ACCA
1 ACCA
67495701 ATATTGGGGT
Statistics
Matches: 48, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
25 2 0.04
27 42 0.88
28 4 0.08
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Consensus pattern (27 bp):
ACCATACAAGGGTATTACGGTCATTTT
Found at i:67498387 original size:27 final size:28
Alignment explanation
Indices: 67498357--67498425 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
67498347 ATAGTAAGTC
*
67498357 CGCACACTTAGTGCT-TA-ATAGTCAACT
1 CGCACACTTAGTGCTATACA-AGTAAACT
*
67498384 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAAGTAAACT
67498412 CGCACACTTAGTGC
1 CGCACACTTAGTGC
67498426 CAATCTCATT
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
27 15 0.39
28 22 0.58
29 1 0.03
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAAGTAAACT
Found at i:67507283 original size:29 final size:29
Alignment explanation
Indices: 67507250--67507352 Score: 152
Period size: 29 Copynumber: 3.6 Consensus size: 29
67507240 GTGACGAGAT
67507250 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
67507279 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
67507308 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
67507337 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
67507353 AGCTCGGAGG
Statistics
Matches: 67, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 67 1.00
ACGTcount: A:0.27, C:0.16, G:0.33, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:67516222 original size:27 final size:28
Alignment explanation
Indices: 67516192--67516261 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
67516182 ATAATAAGTC
*
67516192 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
67516219 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
67516247 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
67516262 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:67524275 original size:40 final size:40
Alignment explanation
Indices: 67524190--67524340 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
67524180 AATTGAATGA
* * *
67524190 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
67524230 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
67524271 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
67524310 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
67524341 ACGTGATTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:67524354 original size:40 final size:40
Alignment explanation
Indices: 67524226--67524356 Score: 156
Period size: 40 Copynumber: 3.3 Consensus size: 40
67524216 TATGCTGGAA
* * *
67524226 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
67524266 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
67524306 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
67524346 ATTATATCCGG
1 ATTATATCCGG
67524357 TTATATTCCG
Statistics
Matches: 73, Mismatches: 17, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:67549258 original size:56 final size:56
Alignment explanation
Indices: 67549135--67549306 Score: 274
Period size: 56 Copynumber: 3.1 Consensus size: 56
67549125 GACCATGGCA
*
67549135 TCGATATATGTGTGTGAGTAAGACCATGTTTAATACGTT-GCATCGATATGTGATT
1 TCGATATATGTGTGCGAGTAAGACCATGTTTAATACGTTGGCATCGATATGTGATT
**
67549190 TCGATATATGTGTGCGAGTAAGACCACATTTAATACGTTGGCATCGATATGTGATT
1 TCGATATATGTGTGCGAGTAAGACCATGTTTAATACGTTGGCATCGATATGTGATT
* * *
67549246 TCGATATATGTGTGCGAGTAAGACCATGTTCAATACATTGGCATTGATATGTGATT
1 TCGATATATGTGTGCGAGTAAGACCATGTTTAATACGTTGGCATCGATATGTGATT
*
67549302 ACGAT
1 TCGAT
67549307 TAAGACCCTA
Statistics
Matches: 107, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
55 36 0.34
56 71 0.66
ACGTcount: A:0.28, C:0.13, G:0.23, T:0.35
Consensus pattern (56 bp):
TCGATATATGTGTGCGAGTAAGACCATGTTTAATACGTTGGCATCGATATGTGATT
Found at i:67557818 original size:40 final size:40
Alignment explanation
Indices: 67557724--67557907 Score: 198
Period size: 40 Copynumber: 4.6 Consensus size: 40
67557714 TATTCGAATG
* *
67557724 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTCGTGCTA-GTGACT
* * *
67557765 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTCGTGCTAG-TGACT
* * *
67557805 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTCGTGCTAGTGACT
*
67557845 ATATCCGGGCTAAG-TCCCGAAGGCA-TCTGTGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTC-GTGCTAGTGACT
*
67557885 ATATCC-GGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
67557908 CTTGTGCAAG
Statistics
Matches: 121, Mismatches: 16, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
39 17 0.14
40 74 0.61
41 29 0.24
42 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTCGTGCTAGTGACT
Found at i:67565867 original size:40 final size:40
Alignment explanation
Indices: 67565773--67565992 Score: 213
Period size: 40 Copynumber: 5.5 Consensus size: 40
67565763 TATTCGAATG
* *
67565773 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTCGTGCTA-GTGACT
* * *
67565814 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTCGTGCTAG-TGACT
* * *
67565854 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTCGTGCTAGTGACT
*
67565894 ATATCCGGGCTAAG-TCCCGAAGGCA-TCTGTGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTC-GTGCTAGTGACT
* * * *
67565934 ATATCCGGGCTAAGACCCGAAGGCCTT-GTGCAAGT-AGTT
1 ATATCCGGGCTAAGATCCGAAGGCATTCGTGCTAGTGA-CT
67565973 ATATCC-GGCTAA-ATCCGAAG
1 ATATCCGGGCTAAGATCCGAAG
67565993 ATTACTTGAG
Statistics
Matches: 150, Mismatches: 21, Indels: 20
0.79 0.11 0.10
Matches are distributed among these distances:
37 7 0.05
38 7 0.05
39 15 0.10
40 90 0.60
41 30 0.20
42 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTCGTGCTAGTGACT
Found at i:67565943 original size:80 final size:81
Alignment explanation
Indices: 67565773--67565957 Score: 252
Period size: 80 Copynumber: 2.3 Consensus size: 81
67565763 TATTCGAATG
* * *
67565773 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
*
67565838 ATTCGTGCGAGTTGCT
66 ATTCGTGCGAGTTGCC
* *
67565854 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGAT-CCGAAGG
*
67565917 CA-TCTGTGCTAG-TGACC
65 CATTC-GTGCGAGTTG-CC
67565934 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
67565958 CTTGTGCAAG
Statistics
Matches: 94, Mismatches: 7, Indels: 7
0.87 0.06 0.06
Matches are distributed among these distances:
79 5 0.05
80 57 0.61
81 32 0.34
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (81 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
ATTCGTGCGAGTTGCC
Found at i:67569249 original size:17 final size:17
Alignment explanation
Indices: 67569206--67569250 Score: 51
Period size: 16 Copynumber: 2.8 Consensus size: 17
67569196 TTCTCCCTAC
*
67569206 TTTC-TTTC-TTTTGGG
1 TTTCTTTTCATTTGGGG
*
67569221 TTT-TTGTCATTTGGGG
1 TTTCTTTTCATTTGGGG
67569237 TTTCTTTTCATTTG
1 TTTCTTTTCATTTG
67569251 TTTCTAAAGC
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
15 6 0.25
16 9 0.38
17 9 0.38
ACGTcount: A:0.04, C:0.11, G:0.20, T:0.64
Consensus pattern (17 bp):
TTTCTTTTCATTTGGGG
Found at i:67570692 original size:34 final size:34
Alignment explanation
Indices: 67570654--67570728 Score: 82
Period size: 34 Copynumber: 2.2 Consensus size: 34
67570644 GCTAAGGCTT
67570654 ACACTGTTACTGCTAATG-TAATGGG-TTAAGGCCC
1 ACACTGTTACTGCTAATGAT-ATGGGCTTAA-GCCC
* * *
67570688 ACACTGATATTGCTACTGATATGGGCTTAAGCCC
1 ACACTGTTACTGCTAATGATATGGGCTTAAGCCC
*
67570722 AGACTGT
1 ACACTGT
67570729 CCAACACTGT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
34 29 0.85
35 5 0.15
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (34 bp):
ACACTGTTACTGCTAATGATATGGGCTTAAGCCC
Found at i:67573645 original size:43 final size:42
Alignment explanation
Indices: 67573551--67573664 Score: 124
Period size: 43 Copynumber: 2.7 Consensus size: 42
67573541 CAATATCCAT
* *
67573551 GCCTCTGTCCCAGACAGGGTTTTACACGAAATCAGATACGAT
1 GCCTATGTCCCAGACAGGGTTTTACACGAAATCAGATACGAG
* * *
67573593 GCCAATGTCCCAGACATGGTTTTATACGTAAATCTCA-AT-CGAG
1 GCCTATGTCCCAGACAGGGTTTTACACG-AAA--TCAGATACGAG
* *
67573636 GCCTATGTCCCAGACACGGTCTTACACGA
1 GCCTATGTCCCAGACAGGGTTTTACACGA
67573665 TGTCTCAAAC
Statistics
Matches: 60, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
42 25 0.42
43 30 0.50
44 2 0.03
45 3 0.05
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (42 bp):
GCCTATGTCCCAGACAGGGTTTTACACGAAATCAGATACGAG
Found at i:67575292 original size:27 final size:27
Alignment explanation
Indices: 67575261--67575314 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
67575251 GTAATTTTAG
*
67575261 ATATATTAATTAGCATAAGTAATGAGT
1 ATATATTAATTAACATAAGTAATGAGT
67575288 ATATATTAATTAACATAAGTAATGAGT
1 ATATATTAATTAACATAAGTAATGAGT
67575315 GTACTTTTTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.46, C:0.04, G:0.13, T:0.37
Consensus pattern (27 bp):
ATATATTAATTAACATAAGTAATGAGT
Found at i:67586207 original size:40 final size:40
Alignment explanation
Indices: 67586111--67586301 Score: 238
Period size: 40 Copynumber: 4.8 Consensus size: 40
67586101 CGAATGGTGT
* * * * * *
67586111 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACCAAAA
* *
67586152 CCGGGTCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
*
67586192 CCGGGTTAAGTCCCGAAGGCATTTGTGCAAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * *
67586232 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * *
67586272 CCGGGCTAATTCCCGAAGGCAATTGTGCGA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGA
67586302 ACCACTATAA
Statistics
Matches: 131, Mismatches: 19, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
40 107 0.82
41 24 0.18
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
Found at i:67586262 original size:80 final size:81
Alignment explanation
Indices: 67586111--67586299 Score: 263
Period size: 80 Copynumber: 2.3 Consensus size: 81
67586101 CGAATGGTGT
* * * * *
67586111 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAAACCGGGTCAAGTCCCGAAGGCATTC
67586176 GTGCGAGTTACCAAAA
66 GTGCGAGTTACCAAAA
* * *
67586192 CCGGGTTAAGTCCCGAAGGCATTTGTGC-AAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTC
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAAACCGGGTCAAGTCCCGAAGGCATTC
* *
67586256 GTGCGAGTTACTAAAT
66 GTGCGAGTTACCAAAA
* *
67586272 CCGGGCTAATTCCCGAAGGCAATTGTGC
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC
67586300 GAACCACTAT
Statistics
Matches: 95, Mismatches: 13, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
80 69 0.73
81 26 0.27
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAAACCGGGTCAAGTCCCGAAGGCATTC
GTGCGAGTTACCAAAA
Found at i:67586314 original size:80 final size:79
Alignment explanation
Indices: 67586110--67586343 Score: 256
Period size: 80 Copynumber: 2.9 Consensus size: 79
67586100 TCGAATGGTG
* * *
67586110 TCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTCACTAAA-CCGGGTCAAGTCCCGAAGGCATT
*
67586175 TGTGCGAGTTACCAAA
64 CGTGCGAGTTACCAAA
* * * * *
67586191 ACCGGGTTAAGTCCCGAAGGCATTTGTGCAAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCA-CTAAACCGGGTCAAGTCCCGAAGGCATTC
*
67586256 GTGCGAGTTACTAAA
65 GTGCGAGTTACCAAA
* * * * *
67586271 TCCGGGCTAATTCCCGAAGGCAATTGTGCGAA-CCACTATAACCGGG-CAATGTCCCGAAGACAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTCACTA-AACCGGGTCAA-GTCCCGAAGGCAT
*
67586334 TCGAGCGAGT
63 TCGTGCGAGT
67586344 CGCTATATCC
Statistics
Matches: 129, Mismatches: 20, Indels: 9
0.82 0.13 0.06
Matches are distributed among these distances:
79 4 0.03
80 93 0.72
81 32 0.25
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.22
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCACTAAACCGGGTCAAGTCCCGAAGGCATTCG
TGCGAGTTACCAAA
Found at i:67586316 original size:40 final size:39
Alignment explanation
Indices: 67586111--67586334 Score: 177
Period size: 40 Copynumber: 5.6 Consensus size: 39
67586101 CGAATGGTGT
** * *
67586111 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAA
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAA-TTACTAAA
* * * *
67586151 TCCGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 -CCGGGCT-AAGTCCCGAAGGCAATTGTGCGAATTA-CTAAA
* * *
67586192 CCGGGTTAAGTCCCGAAGGCATTTGTGC-AAGTTACCAAAA
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAA-TTA-CTAAA
* *
67586232 CCGGGTTAAGTCCCGAAGGC-ATTCGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCAATT-GTGCGAATTACTAAA
* **
67586271 TCCGGGCTAATTCCCGAAGGCAATTGTGCGAACCACTATAA
1 -CCGGGCTAAGTCCCGAAGGCAATTGTGCGAATTACTA-AA
*
67586312 CCGGGC-AATGTCCCGAAGACAAT
1 CCGGGCTAA-GTCCCGAAGGCAAT
67586335 CGAGCGAGTC
Statistics
Matches: 155, Mismatches: 18, Indels: 21
0.80 0.09 0.11
Matches are distributed among these distances:
39 9 0.06
40 110 0.71
41 36 0.23
ACGTcount: A:0.28, C:0.25, G:0.25, T:0.22
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCAATTGTGCGAATTACTAAA
Found at i:67586325 original size:120 final size:121
Alignment explanation
Indices: 67586111--67586329 Score: 291
Period size: 120 Copynumber: 1.8 Consensus size: 121
67586101 CGAATGGTGT
* * *
67586111 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
*** *
67586176 GTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTTGTGCAAGTTACCAAAA
66 GTGCGAACCACCAAAACCGGGTCAAGTCCCGAAGGCATTTGTGCAAGTTACCAAAA
* * *
67586232 CCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAATCCGGG-CTAATTCCCGAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTC-AATTCCCGAAGGCAAT
* *
67586295 TGTGCGAACCACTATAACCGGG-CAATGTCCCGAAG
65 TGTGCGAACCACCAAAACCGGGTCAA-GTCCCGAAG
67586330 ACAATCGAGC
Statistics
Matches: 84, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
119 3 0.04
120 56 0.67
121 25 0.30
ACGTcount: A:0.27, C:0.25, G:0.26, T:0.22
Consensus pattern (121 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
GTGCGAACCACCAAAACCGGGTCAAGTCCCGAAGGCATTTGTGCAAGTTACCAAAA
Found at i:67588195 original size:26 final size:26
Alignment explanation
Indices: 67588166--67588273 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
67588156 TGATACAAAT
67588166 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
67588192 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
67588218 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
67588244 TGATAATGGATTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
67588270 TGAT
1 TGAT
67588274 GGGAATCTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.06, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:67589905 original size:27 final size:26
Alignment explanation
Indices: 67589865--67590005 Score: 183
Period size: 27 Copynumber: 5.2 Consensus size: 26
67589855 AGGAAGCGTC
*
67589865 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
67589892 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
* *
67589919 CTGGTGGCTATGCCACGATTATTTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
67589946 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
67589973 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACATTATCTG-AT
67590000 CTGGTG
1 CTGGTG
67590006 ACTTCGTCAC
Statistics
Matches: 100, Mismatches: 10, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
26 10 0.10
27 88 0.88
28 2 0.02
ACGTcount: A:0.17, C:0.23, G:0.24, T:0.35
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:67589947 original size:54 final size:53
Alignment explanation
Indices: 67589865--67590005 Score: 228
Period size: 54 Copynumber: 2.6 Consensus size: 53
67589855 AGGAAGCGTC
67589865 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
*
67589919 CTGGTGGCTATGCCACGATTATTTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* *
67589973 CTGGTGGCTCTGCCACAATATCTGTATCTGGTG
1 CTGGTGGCTATGCCACATTATCTG-ATCTGGTG
67590006 ACTTCGTCAC
Statistics
Matches: 81, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
53 6 0.07
54 75 0.93
ACGTcount: A:0.17, C:0.23, G:0.24, T:0.35
Consensus pattern (53 bp):
CTGGTGGCTATGCCACATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:67590016 original size:27 final size:26
Alignment explanation
Indices: 67589865--67590023 Score: 149
Period size: 27 Copynumber: 5.9 Consensus size: 26
67589855 AGGAAGCGTC
* * *
67589865 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGACTCTGCCACAA-TATCTGTT
*
67589892 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGACTCTGCCACA-ATATCTGTT
* * * * *
67589919 CTGGTGGCTATGCCACGATTATTTGAT
1 CTGGTGACTCTGCCAC-AATATCTGTT
*
67589946 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGACTCTGCCACA-ATATCTGTT
*
67589973 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGACTCTGCCACAATATCTGT-T
*
67590000 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGACTCT-GCCACAATATCTG
67590024 GCAGCCTCGC
Statistics
Matches: 115, Mismatches: 12, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
26 10 0.09
27 103 0.90
28 2 0.02
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (26 bp):
CTGGTGACTCTGCCACAATATCTGTT
Found at i:67595390 original size:26 final size:26
Alignment explanation
Indices: 67595287--67595393 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
67595277 TGATACAAAT
67595287 TGATAATGGGTTAGGT-AATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
67595312 CGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
67595338 AGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
67595364 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
67595390 TGAT
1 TGAT
67595394 GGGAATCTCA
Statistics
Matches: 76, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
25 15 0.20
26 61 0.80
ACGTcount: A:0.31, C:0.07, G:0.27, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:67597018 original size:27 final size:27
Alignment explanation
Indices: 67596978--67597118 Score: 180
Period size: 27 Copynumber: 5.2 Consensus size: 27
67596968 AGGAAGCGTC
67596978 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTATGCCACAATTATCTGAT
* *
67597005 CTGGTGGCTTTGCCAC-ATATATCTGTT
1 CTGGTGGCTATGCCACAAT-TATCTGAT
*
67597032 CTGGTGGCTATGCCACGATTATCTGAT
1 CTGGTGGCTATGCCACAATTATCTGAT
* *
67597059 CTGGTGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTATGCCACAAT-TATCTGAT
*
67597086 CTGGTGGCTCTGCCACAA-TATCTGTAT
1 CTGGTGGCTATGCCACAATTATCTG-AT
67597113 CTGGTG
1 CTGGTG
67597119 ACTTCGTCAC
Statistics
Matches: 102, Mismatches: 7, Indels: 10
0.86 0.06 0.08
Matches are distributed among these distances:
26 10 0.10
27 89 0.87
28 3 0.03
ACGTcount: A:0.17, C:0.23, G:0.24, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTATGCCACAATTATCTGAT
Found at i:67597060 original size:54 final size:53
Alignment explanation
Indices: 67596978--67597136 Score: 230
Period size: 54 Copynumber: 3.0 Consensus size: 53
67596968 AGGAAGCGTC
67596978 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTTTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTTTGCCACATATATCTGTT
*
67597032 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTTTGCCACATATATCTGTT
* * * * *
67597086 CTGGTGGCTCTGCCACAATATCTGTATCTGGTGACTTCGTCACA-ATATCTG
1 CTGGTGGCTATGCCACATTATCTG-ATCTGGTGGCTTTGCCACATATATCTG
67597137 GCAGCCTCGC
Statistics
Matches: 96, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
53 14 0.15
54 82 0.85
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (53 bp):
CTGGTGGCTATGCCACATTATCTGATCTGGTGGCTTTGCCACATATATCTGTT
Found at i:67597129 original size:27 final size:27
Alignment explanation
Indices: 67596978--67597136 Score: 154
Period size: 27 Copynumber: 5.9 Consensus size: 27
67596968 AGGAAGCGTC
67596978 CTGGTGGCTAT-GCCACAATTATCTG-AT
1 CTGGTGGCT-TCGCCACAA-TATCTGTAT
*
67597005 CTGGTGGCTTTGCCACATATATCTGT-T
1 CTGGTGGCTTCGCCACA-ATATCTGTAT
*
67597032 CTGGTGGCTAT-GCCACGATTATCTG-AT
1 CTGGTGGCT-TCGCCAC-AATATCTGTAT
67597059 CTGGTGGC-TCTGCCACATATATCTGT-T
1 CTGGTGGCTTC-GCCACA-ATATCTGTAT
67597086 CTGGTGGC-TCTGCCACAATATCTGTAT
1 CTGGTGGCTTC-GCCACAATATCTGTAT
* *
67597113 CTGGTGACTTCGTCACAATATCTG
1 CTGGTGGCTTCGCCACAATATCTG
67597137 GCAGCCTCGC
Statistics
Matches: 116, Mismatches: 4, Indels: 24
0.81 0.03 0.17
Matches are distributed among these distances:
25 1 0.01
26 10 0.09
27 100 0.86
28 5 0.04
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTTCGCCACAATATCTGTAT
Found at i:67598345 original size:34 final size:34
Alignment explanation
Indices: 67598307--67598384 Score: 147
Period size: 34 Copynumber: 2.3 Consensus size: 34
67598297 AATTATCTAT
*
67598307 TTGATCCTACTATGGTGACTTTCCAATTAGTTGA
1 TTGATCCTACTATGGTGACTTTACAATTAGTTGA
67598341 TTGATCCTACTATGGTGACTTTACAATTAGTTGA
1 TTGATCCTACTATGGTGACTTTACAATTAGTTGA
67598375 TTGATCCTAC
1 TTGATCCTAC
67598385 ACCCATTTGA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
34 43 1.00
ACGTcount: A:0.24, C:0.18, G:0.17, T:0.41
Consensus pattern (34 bp):
TTGATCCTACTATGGTGACTTTACAATTAGTTGA
Found at i:67607789 original size:46 final size:45
Alignment explanation
Indices: 67607720--67607893 Score: 183
Period size: 46 Copynumber: 3.8 Consensus size: 45
67607710 GTAACCCGCC
*
67607720 CCTAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
67607765 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * * * ** *
67607815 -CTCA-CGAACTCGGACTCAACTGAACGAGTTTGAACATTCGCAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
67607858 CCGTAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
67607894 ATGCTCAACC
Statistics
Matches: 104, Mismatches: 15, Indels: 19
0.75 0.11 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 4 0.04
46 57 0.55
47 25 0.24
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (45 bp):
CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:67607834 original size:93 final size:93
Alignment explanation
Indices: 67607727--67607897 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
67607717 GCCCCTAAGT
** *
67607727 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
67607792 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * * *
67607820 GAACTCGGACTCAACTGAACGAGTTTGAACATTCGCATCCGTAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
67607885 CGAGTTCGGATGC
66 CGAGTTCGGATGC
67607898 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:67614846 original size:79 final size:81
Alignment explanation
Indices: 67614745--67614929 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
67614735 ACGACTCGCT
** * *
67614745 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
67614808 GGGTTTAGTAACTT-GCA
64 GGATATAGTAACTTAGCA
* **
67614825 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
*
67614889 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
67614905 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
67614930 CATCATTCGA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
ATATAGTAACTTAGCA
Found at i:67614929 original size:40 final size:39
Alignment explanation
Indices: 67614738--67614929 Score: 163
Period size: 40 Copynumber: 4.8 Consensus size: 39
67614728 GGATATAACG
* ** * *
67614738 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTG
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
67614778 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
67614818 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
67614857 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTA
*
67614897 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
67614930 CATCATTCGA
Statistics
Matches: 121, Mismatches: 24, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 79 0.65
41 10 0.08
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:67621240 original size:79 final size:81
Alignment explanation
Indices: 67621139--67621323 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
67621129 ACGACTCGCT
** * *
67621139 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
67621202 GGGTTTAGTAACTT-GCA
64 GGATATAGTAACTTAGCA
* **
67621219 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
*
67621283 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
67621299 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
67621324 CATCATTCGA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
ATATAGTAACTTAGCA
Found at i:67621323 original size:40 final size:39
Alignment explanation
Indices: 67621132--67621323 Score: 163
Period size: 40 Copynumber: 4.8 Consensus size: 39
67621122 GGATATAACG
* ** * *
67621132 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTG
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
67621172 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
67621212 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
67621251 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTA
*
67621291 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
67621324 CATCATTCGA
Statistics
Matches: 121, Mismatches: 24, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 79 0.65
41 10 0.08
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:67624767 original size:46 final size:45
Alignment explanation
Indices: 67624717--67624889 Score: 163
Period size: 46 Copynumber: 3.8 Consensus size: 45
67624707 GTTGAGCATC
*
67624717 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATGTT
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATGCGAATGAT
* * *
67624763 CGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATG-TAACTAGGCAT
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGATGCGAA-T--G-AT
* * * **
67624809 CGGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATCCGAACGCC
1 C-GAACTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATGCGAATGAT
* *
67624856 CGAGCTCATTGAGTTGAGTCCGAGTTCACTTAGG
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGG
67624890 GGCGGGTTAC
Statistics
Matches: 103, Mismatches: 15, Indels: 19
0.75 0.11 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 57 0.55
47 26 0.25
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (45 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGATGCGAATGAT
Found at i:67624871 original size:93 final size:93
Alignment explanation
Indices: 67624712--67624882 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
67624702 GGATGGTTGA
* * ** *
67624712 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATCCGAACGCCCGAACTCATTGAGT
67624777 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * *
67624805 GCATCGGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATCCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATCCGAACGCCCGAACTCATTGAGT
67624870 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
67624883 ACTTAGGGGC
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATCCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:67631892 original size:18 final size:19
Alignment explanation
Indices: 67631861--67631898 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
67631851 GGAATATACC
67631861 AAATAATGAATTTTAGCAA
1 AAATAATGAATTTTAGCAA
* *
67631880 AAAT-ATGATTTTTATCAA
1 AAATAATGAATTTTAGCAA
67631898 A
1 A
67631899 TTCTGCTGCA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.50, C:0.05, G:0.08, T:0.37
Consensus pattern (19 bp):
AAATAATGAATTTTAGCAA
Found at i:67643759 original size:29 final size:28
Alignment explanation
Indices: 67643671--67643772 Score: 82
Period size: 29 Copynumber: 3.5 Consensus size: 28
67643661 TACTCAATCA
* *
67643671 CGCACACTTAGTGCCACGT-GATTCAAGCC
1 CGCACACTTAGTG-C-CGTACATTCAAGCT
* * * *
67643700 CGCACACATAGTGCCATATAGTCCCAA-CT
1 CGCACACTTAGTGCCGTACA-T-TCAAGCT
67643729 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCGTACATT-CAAGCT
*
67643758 CGCACACTCAGTGCC
1 CGCACACTTAGTGCC
67643773 AATCTCGTCA
Statistics
Matches: 58, Mismatches: 10, Indels: 10
0.74 0.13 0.13
Matches are distributed among these distances:
27 2 0.03
28 6 0.10
29 47 0.81
30 3 0.05
ACGTcount: A:0.26, C:0.35, G:0.18, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCGTACATTCAAGCT
Found at i:67647668 original size:14 final size:16
Alignment explanation
Indices: 67647649--67647686 Score: 53
Period size: 14 Copynumber: 2.5 Consensus size: 16
67647639 AAGAAAACGA
*
67647649 TGATATATGACA-A-G
1 TGATATATGAAATAGG
67647663 TGATATATGAAATAGG
1 TGATATATGAAATAGG
67647679 TGATATAT
1 TGATATAT
67647687 ATATGTTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 11 0.52
15 1 0.05
16 9 0.43
ACGTcount: A:0.42, C:0.03, G:0.21, T:0.34
Consensus pattern (16 bp):
TGATATATGAAATAGG
Found at i:67651351 original size:34 final size:34
Alignment explanation
Indices: 67651302--67651383 Score: 123
Period size: 34 Copynumber: 2.4 Consensus size: 34
67651292 ATTTGGTTGC
67651302 ATACTG-TACTGAAATGGGCTAAGGCCCAGACTG
1 ATACTGTTACTGAAATGGGCTAAGGCCCAGACTG
* *
67651335 -TCTCTGTTACTGAAATGGGCTCAGGCCCAGACTG
1 AT-ACTGTTACTGAAATGGGCTAAGGCCCAGACTG
67651369 ATACTGTTACTGAAA
1 ATACTGTTACTGAAA
67651384 AAAGGGGCTA
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
32 1 0.02
33 3 0.07
34 38 0.88
35 1 0.02
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (34 bp):
ATACTGTTACTGAAATGGGCTAAGGCCCAGACTG
Found at i:67653787 original size:94 final size:91
Alignment explanation
Indices: 67653621--67653839 Score: 248
Period size: 94 Copynumber: 2.4 Consensus size: 91
67653611 AATTTCTTGT
* *
67653621 GTGCCAGTGTAAGACATGTCTGGGACATGCATCAACCATATTATGAGTGCCAGTATAAGACCATG
1 GTGCTAGTGTAAGACATGTCTGGGACATGCATCAACCATATGATGAGTGCCAGTATAAGACCATG
* * *
67653686 TCTGGGACATGGCATCGG-TGTAGAGATGG
66 TCTGGGACA-CGCATCGGCT-AAAAG-T-G
* ** *
67653715 GTGCTAGTGTAAGACATGTTTGGGACATGCATCCGCC-TCGATGATGA-TAGCCAGTGTAAGA-C
1 GTGCTAGTGTAAGACATGTCTGGGACATGCATCAACCAT--ATGATGAGT-GCCAGTATAAGACC
* *
67653777 ATGTTTGGGACACGCATCGGCTAAAAGTT
63 ATGTCTGGGACACGCATCGGCTAAAAGTG
67653806 GTGCTAGTGTAAGACATGTCTGGGACATGCATCA
1 GTGCTAGTGTAAGACATGTCTGGGACATGCATCA
67653840 GCATGTATAT
Statistics
Matches: 108, Mismatches: 13, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
91 32 0.30
92 1 0.01
93 11 0.10
94 47 0.44
95 17 0.16
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (91 bp):
GTGCTAGTGTAAGACATGTCTGGGACATGCATCAACCATATGATGAGTGCCAGTATAAGACCATG
TCTGGGACACGCATCGGCTAAAAGTG
Found at i:67653910 original size:49 final size:46
Alignment explanation
Indices: 67653626--67653939 Score: 198
Period size: 47 Copynumber: 6.7 Consensus size: 46
67653616 CTTGTGTGCC
** * * *
67653626 AGTGTAAGACATGTCTGGGACATGCATCAACCAT-ATTATGAGT-GCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCC-TGATAATG-CTAGCT
* * *
67653672 AGTATAAGACCATGTCTGGGACATGGCATCGG--TGTAGAGATGGGT-GCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTG-ATA-AT-GCTAGCT
* * * * *
67653720 AGTGTAAGACATGTTTGGGACATGCATCCGCCTCGATGATGATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-GATAATGCTAGCT
* * *
67653767 AGTGTAAGACATGTTTGGGACACGCATCGG-CT-AAAAGTTG-T-GCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTGATAA--TGCTAGCT
* * * *
67653811 AGTGTAAGACATGTCTGGGACATGCATCAGCATG-TATATACAAGAACT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTGATA-ATGCTAG--CT
*
67653859 AGTATAAGATCATGTCTGGGACATGGCATCGGCCTCGATAATGCTAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCT-GATAATGCTAGCT
*
67653908 AGTGTAAGACCATGTTTGGGACATTGCATCGG
1 AGTGTAAGA-CATGTCTGGGACA-TGCATCGG
67653940 TAACTTATCC
Statistics
Matches: 211, Mismatches: 33, Indels: 45
0.73 0.11 0.16
Matches are distributed among these distances:
44 32 0.15
45 4 0.02
46 22 0.10
47 60 0.28
48 31 0.15
49 45 0.21
50 9 0.04
51 6 0.03
52 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTGATAATGCTAGCT
Found at i:67657012 original size:13 final size:13
Alignment explanation
Indices: 67656990--67657022 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
67656980 AAGGGTTTGT
67656990 TTAT-TAAACTAA
1 TTATCTAAACTAA
67657002 TTATCTAAACTAA
1 TTATCTAAACTAA
*
67657015 TTAACTAA
1 TTATCTAA
67657023 TTTAATCAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:67661012 original size:29 final size:28
Alignment explanation
Indices: 67660980--67661081 Score: 114
Period size: 29 Copynumber: 3.5 Consensus size: 28
67660970 GTGACGAGAT
* *
67660980 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
67661009 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
67661038 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
67661067 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
67661082 ATGATTGAGT
Statistics
Matches: 61, Mismatches: 10, Indels: 4
0.81 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 57 0.93
30 1 0.02
ACGTcount: A:0.22, C:0.17, G:0.32, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:67664780 original size:46 final size:46
Alignment explanation
Indices: 67664730--67664905 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
67664720 TGGTTGAGCA
67664730 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
67664776 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
67664821 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
67664869 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
67664906 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:67664886 original size:93 final size:93
Alignment explanation
Indices: 67664727--67664898 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
67664717 GGATGGTTGA
* *
67664727 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
67664792 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
67664820 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
67664885 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
67664899 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:67669662 original size:40 final size:40
Alignment explanation
Indices: 67669614--67669706 Score: 127
Period size: 40 Copynumber: 2.3 Consensus size: 40
67669604 ATGACTCACT
67669614 CAAATGCCTTCGGGAC-AAAGCCC-GGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTAAA-CCCGGGTT-TAGTAACTCGCA
* * *
67669654 CGAATGCCTTTGGGACTTAACCCGGGTTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTAAACCCGGGTTTAGTAACTCGCA
67669694 CAAATGCCTTCGG
1 CAAATGCCTTCGG
67669707 ATCTTAGTCC
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
40 40 0.87
41 6 0.13
ACGTcount: A:0.26, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTAAACCCGGGTTTAGTAACTCGCA
Found at i:67677340 original size:40 final size:40
Alignment explanation
Indices: 67677255--67677405 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
67677245 AATTGAATGA
* * *
67677255 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
67677295 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
67677336 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
67677375 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
67677406 ACGTGATTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:67677419 original size:40 final size:40
Alignment explanation
Indices: 67677291--67677421 Score: 156
Period size: 40 Copynumber: 3.3 Consensus size: 40
67677281 TATGCTGGAA
* * *
67677291 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
67677331 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
67677371 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
67677411 ATTATATCCGG
1 ATTATATCCGG
67677422 TTATATTCCG
Statistics
Matches: 73, Mismatches: 17, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:67689458 original size:104 final size:104
Alignment explanation
Indices: 67689331--67689540 Score: 393
Period size: 104 Copynumber: 2.0 Consensus size: 104
67689321 CCTTGCCTTG
67689331 AGCAAATGTTTTCTTTCTAAGGTTAAACCCCTACCCTTGGTCAGTATGGTTATATGCAGAACTTG
1 AGCAAATGTTTTCTTTCTAAGGTTAAACCCCTACCCTTGGTCAGTATGGTTATATGCAGAACTTG
* *
67689396 TCTAAAGCATGACAGAGTGAGCATGCTTGCCTAGTGGTA
66 TCTAAAGCATGACAAAGTGAGCATGCTAGCCTAGTGGTA
67689435 AGCAAATGTTTTCTTTCTAAGGTTAAACCCCTACCCTTGGTCAGTATGGTTATATGCAGAACTTG
1 AGCAAATGTTTTCTTTCTAAGGTTAAACCCCTACCCTTGGTCAGTATGGTTATATGCAGAACTTG
*
67689500 TCTAAAGTATGACAAAGTGAGCATGCTAGCCTAGTGGTA
66 TCTAAAGCATGACAAAGTGAGCATGCTAGCCTAGTGGTA
67689539 AG
1 AG
67689541 GGGCGTGTTA
Statistics
Matches: 103, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
104 103 1.00
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (104 bp):
AGCAAATGTTTTCTTTCTAAGGTTAAACCCCTACCCTTGGTCAGTATGGTTATATGCAGAACTTG
TCTAAAGCATGACAAAGTGAGCATGCTAGCCTAGTGGTA
Found at i:67693474 original size:47 final size:47
Alignment explanation
Indices: 67693329--67693498 Score: 143
Period size: 47 Copynumber: 3.6 Consensus size: 47
67693319 TCTTGTGTGC
* * * *
67693329 CAGTGTAAGACATGTTTGGGGCATGCATCGGCCAC-ATTATG--AGTG
1 CAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATCATGATAG-G
* * ** * *
67693374 CTAGTATAAGATCATGTCTGGGACATGGCATCAGTGTAGA-CATGAGTA-C
1 C-AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGATCATGA-TAGG
* *
67693423 CAGTGTAAGACATGTTTGGGACATGCATCGGCCTCGATGATGATAGG
1 CAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATCATGATAGG
*
67693470 CAGTGTAAGACATGTCTGGGACACGCATC
1 CAGTGTAAGACATGTCTGGGACATGCATC
67693499 AGCTAAGAGT
Statistics
Matches: 96, Mismatches: 20, Indels: 16
0.73 0.15 0.12
Matches are distributed among these distances:
45 1 0.01
46 19 0.20
47 56 0.58
48 17 0.18
49 2 0.02
51 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.25
Consensus pattern (47 bp):
CAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATCATGATAGG
Found at i:67693489 original size:94 final size:93
Alignment explanation
Indices: 67693328--67693500 Score: 244
Period size: 94 Copynumber: 1.8 Consensus size: 93
67693318 TTCTTGTGTG
* *
67693328 CCAGTGTAAGACATGTTTGGGGCATGCATCGGCCACATTATGAGTGCTAGTATAAGATCATGTCT
1 CCAGTGTAAGACATGTTTGGGACATGCATCGGCCACATGATGAGTGCTAGTATAAGATCATGTCT
*
67693393 GGGACATGGCATCAGTGTAGACATGAGTA
66 GGGACA-CGCATCAGTGTAGACATGAGTA
* *
67693422 CCAGTGTAAGACATGTTTGGGACATGCATCGGCCTCGATGATGA-TAGGC-AGTGTAAGA-CATG
1 CCAGTGTAAGACATGTTTGGGACATGCATCGGCCAC-ATGATGAGT--GCTAGTATAAGATCATG
67693484 TCTGGGACACGCATCAG
63 TCTGGGACACGCATCAG
67693501 CTAAGAGTTG
Statistics
Matches: 71, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
93 7 0.10
94 48 0.68
95 14 0.20
96 2 0.03
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.25
Consensus pattern (93 bp):
CCAGTGTAAGACATGTTTGGGACATGCATCGGCCACATGATGAGTGCTAGTATAAGATCATGTCT
GGGACACGCATCAGTGTAGACATGAGTA
Done.