Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 216 of 318
Found at i:68006061 original size:44 final size:41
Alignment explanation
Indices: 68006013--68006113 Score: 116
Period size: 40 Copynumber: 2.4 Consensus size: 41
68006003 TAGAACGATT
*
68006013 TCGCACACTTAGTGCCATTTCA-ATTAACCGAAGCTATCTCAGTA
1 TCGCACACTTAGTGCCA--TCAGA-TAACCGAAGCTAT-TCAGAA
* **
68006057 TCGCACACTTAGTGCC-TCAGATAGCCGAAGCTATTTTGAA
1 TCGCACACTTAGTGCCATCAGATAACCGAAGCTATTCAGAA
68006097 TCGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
68006114 AATACCATTT
Statistics
Matches: 51, Mismatches: 4, Indels: 7
0.82 0.06 0.11
Matches are distributed among these distances:
40 19 0.37
41 15 0.29
42 1 0.02
44 16 0.31
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.28
Consensus pattern (41 bp):
TCGCACACTTAGTGCCATCAGATAACCGAAGCTATTCAGAA
Found at i:68008098 original size:58 final size:58
Alignment explanation
Indices: 68008024--68008140 Score: 216
Period size: 58 Copynumber: 2.0 Consensus size: 58
68008014 TAAATCACAT
*
68008024 TACATACAAACACAACATTCAATTAACATAATTACATGCCCGATTAAGTTACATGAAC
1 TACATACAAACACAACATTCAATTAACATAATTACATGCCCGATTAAGTTACACGAAC
*
68008082 TACATACAAACACAACATTCAATTAACATAATTACATGCTCGATTAAGTTACACGAAC
1 TACATACAAACACAACATTCAATTAACATAATTACATGCCCGATTAAGTTACACGAAC
68008140 T
1 T
68008141 TACCTCGACA
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
58 57 1.00
ACGTcount: A:0.44, C:0.22, G:0.07, T:0.26
Consensus pattern (58 bp):
TACATACAAACACAACATTCAATTAACATAATTACATGCCCGATTAAGTTACACGAAC
Found at i:68010811 original size:30 final size:30
Alignment explanation
Indices: 68010775--68010841 Score: 116
Period size: 30 Copynumber: 2.2 Consensus size: 30
68010765 TATTGCATAT
68010775 TAGAAAAAAATTTTAAATAAATTAAATAAA
1 TAGAAAAAAATTTTAAATAAATTAAATAAA
*
68010805 TAGAAAAACATTTTAAATAAATTAAATAAA
1 TAGAAAAAAATTTTAAATAAATTAAATAAA
*
68010835 TATAAAA
1 TAGAAAA
68010842 GTTACACAGT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.66, C:0.01, G:0.03, T:0.30
Consensus pattern (30 bp):
TAGAAAAAAATTTTAAATAAATTAAATAAA
Found at i:68012265 original size:25 final size:24
Alignment explanation
Indices: 68012213--68012273 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 24
68012203 ATAGCTCGAA
68012213 CGAGCAATCCTG-TTATAGCTCTCT
1 CGAGC-ATCCTGTTTATAGCTCTCT
68012237 CGAGCATCCTGTTATATAGCT-TCT
1 CGAGCATCCTGTT-TATAGCTCTCT
*
68012261 GCGAGCATACTGT
1 -CGAGCATCCTGT
68012274 GTTGCACACT
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
23 6 0.18
24 9 0.27
25 18 0.55
ACGTcount: A:0.21, C:0.26, G:0.20, T:0.33
Consensus pattern (24 bp):
CGAGCATCCTGTTTATAGCTCTCT
Found at i:68013284 original size:19 final size:23
Alignment explanation
Indices: 68013237--68013285 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 23
68013227 ATCATGTTAG
*
68013237 ATGTTAGAATTCGCTTGGTTATA
1 ATGTTTGAATTCGCTTGGTTATA
68013260 ATGTTTGAATT-GC-TGG-TAT-
1 ATGTTTGAATTCGCTTGGTTATA
68013279 ATGTTTG
1 ATGTTTG
68013286 TAAGTATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
19 7 0.28
20 3 0.12
21 3 0.12
22 2 0.08
23 10 0.40
ACGTcount: A:0.22, C:0.06, G:0.24, T:0.47
Consensus pattern (23 bp):
ATGTTTGAATTCGCTTGGTTATA
Found at i:68018018 original size:70 final size:70
Alignment explanation
Indices: 68017944--68018149 Score: 295
Period size: 70 Copynumber: 2.9 Consensus size: 70
68017934 TCTCATATTG
* * * * * *
68017944 TCGAATATACAAATTCAATATAATCTCATATGTAACCGAATATACAAGTTCAATATAAGCTCACA
1 TCGAATACACAAGTTCAATATAATCTCACATGCAGCCGAATATACAAGTTCAATATAAACTCACA
68018009 TGTAA
66 TGTAA
* *
68018014 TCGAATACACAAGTTCAATATAATCTCACATGCAGCCGAATATAGAAGTTAAATATAAACTCACA
1 TCGAATACACAAGTTCAATATAATCTCACATGCAGCCGAATATACAAGTTCAATATAAACTCACA
68018079 TGTAA
66 TGTAA
* * * **
68018084 TCGAATACACAAGTTTAATATAACCTCACATGCAGCCAAATATACAAGTTCAATATATCCTCACA
1 TCGAATACACAAGTTCAATATAATCTCACATGCAGCCGAATATACAAGTTCAATATAAACTCACA
68018149 T
66 T
68018150 ATACTTACCT
Statistics
Matches: 121, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
70 121 1.00
ACGTcount: A:0.43, C:0.20, G:0.09, T:0.28
Consensus pattern (70 bp):
TCGAATACACAAGTTCAATATAATCTCACATGCAGCCGAATATACAAGTTCAATATAAACTCACA
TGTAA
Found at i:68018042 original size:35 final size:35
Alignment explanation
Indices: 68017877--68018149 Score: 250
Period size: 35 Copynumber: 7.8 Consensus size: 35
68017867 CATATGGCCA
* *
68017877 AATATATAAGTTCAATAT-ATCATCACATGTAACCT
1 AATATACAAGTTCAATATAATC-TCACATGTAACCG
* * * * *
68017912 AATGTTCATGTTCAATAAAACATCTCATATTGT---CG
1 AATATACAAGTTCAAT-ATA-ATCTCACA-TGTAACCG
* *
68017947 AATATACAAATTCAATATAATCTCATATGTAACCG
1 AATATACAAGTTCAATATAATCTCACATGTAACCG
* *
68017982 AATATACAAGTTCAATATAAGCTCACATGTAATCG
1 AATATACAAGTTCAATATAATCTCACATGTAACCG
* * *
68018017 AATACACAAGTTCAATATAATCTCACATGCAGCCG
1 AATATACAAGTTCAATATAATCTCACATGTAACCG
* * * *
68018052 AATATAGAAGTTAAATATAAACTCACATGTAATCG
1 AATATACAAGTTCAATATAATCTCACATGTAACCG
* * * * * *
68018087 AATACACAAGTTTAATATAACCTCACATGCAGCCA
1 AATATACAAGTTCAATATAATCTCACATGTAACCG
68018122 AATATACAAGTTCAATAT-ATCCTCACAT
1 AATATACAAGTTCAATATAAT-CTCACAT
68018150 ATACTTACCT
Statistics
Matches: 191, Mismatches: 39, Indels: 16
0.78 0.16 0.07
Matches are distributed among these distances:
32 3 0.02
33 8 0.04
34 3 0.02
35 166 0.87
36 1 0.01
37 4 0.02
38 6 0.03
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.30
Consensus pattern (35 bp):
AATATACAAGTTCAATATAATCTCACATGTAACCG
Found at i:68020694 original size:27 final size:27
Alignment explanation
Indices: 68020661--68020800 Score: 156
Period size: 27 Copynumber: 5.2 Consensus size: 27
68020651 TACTGAAATG
** *
68020661 CCCTCGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
* * *
68020688 CCATCGATTAATAAAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
** * * *
68020715 CCCTTAATTTACAGAATTATCGTTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
68020742 CCCTCGATTTACAAAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
*
68020769 CCCTC-AGTTTACAAAATTACCGTTTTA
1 CCCTCGA-TTTACAAAATTACCATTTTA
68020796 CCCTC
1 CCCTC
68020801 AACTGTGAAA
Statistics
Matches: 94, Mismatches: 18, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
26 1 0.01
27 93 0.99
ACGTcount: A:0.31, C:0.24, G:0.06, T:0.39
Consensus pattern (27 bp):
CCCTCGATTTACAAAATTACCATTTTA
Found at i:68020798 original size:54 final size:54
Alignment explanation
Indices: 68020675--68020800 Score: 180
Period size: 54 Copynumber: 2.3 Consensus size: 54
68020665 CGATTTGTAG
* * * * *
68020675 AATTACCATTTTACCATCGATTAATAAAATTACCATTTTACCCTTAATTTACAG
1 AATTACCGTTTTACCCTCGATTAACAAAATTACCATTTTACCCTCAATTTACAA
* * *
68020729 AATTATCGTTTTACCCTCGATTTACAAAATTACCATTTTACCCTCAGTTTACAA
1 AATTACCGTTTTACCCTCGATTAACAAAATTACCATTTTACCCTCAATTTACAA
68020783 AATTACCGTTTTACCCTC
1 AATTACCGTTTTACCCTC
68020801 AACTGTGAAA
Statistics
Matches: 63, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 63 1.00
ACGTcount: A:0.33, C:0.24, G:0.05, T:0.39
Consensus pattern (54 bp):
AATTACCGTTTTACCCTCGATTAACAAAATTACCATTTTACCCTCAATTTACAA
Found at i:68020877 original size:54 final size:52
Alignment explanation
Indices: 68020808--68020986 Score: 175
Period size: 54 Copynumber: 3.3 Consensus size: 52
68020798 CTCAACTGTG
**
68020808 AAATTACTGAAATACCCCTATAGGATAGAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAT-GG-TAGAATTACCAAAATACCCCTAGTTTGTA
* *
68020862 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTA--TGGTAGAATTACCAAAATACCCCTAGTTTGTA
* * * * *
68020916 AAATTACCGAAATA--CCAATGGTTTGTGAAATTACCGAAATA-CCCTCAATTTGTA
1 AAATTACCAAAATACCCCTATGG--T-AG-AATTACCAAAATACCCCT-AGTTTGTA
68020970 AAATTACCAAAATACCC
1 AAATTACCAAAATACCC
68020987 TTGATTTACA
Statistics
Matches: 104, Mismatches: 12, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
50 2 0.02
52 4 0.04
53 4 0.04
54 91 0.88
55 1 0.01
56 2 0.02
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.28
Consensus pattern (52 bp):
AAATTACCAAAATACCCCTATGGTAGAATTACCAAAATACCCCTAGTTTGTA
Found at i:68021073 original size:27 final size:27
Alignment explanation
Indices: 68020836--68021099 Score: 233
Period size: 27 Copynumber: 9.7 Consensus size: 27
68020826 TATAGGATAG
* *
68020836 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTGTAA
* *
68020863 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTGTAA
* *
68020890 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTGTAA
* ** *
68020917 AATTACCGAAATACCAATGGTTTGTGA
1 AATTACCAAAATACCCTTGGTTTGTAA
* ***
68020944 AATTACCGAAATACCCTCAATTTGTAA
1 AATTACCAAAATACCCTTGGTTTGTAA
* **
68020971 AATTACCAAAATACCCTTGATTTACAA
1 AATTACCAAAATACCCTTGGTTTGTAA
* * *
68020998 AATTACAAAAATACCCTTGACTTTCTAAA
1 AATTACCAAAATACCCTTG-GTTTGT-AA
* * **
68021027 AATTA-TAGAAATACCATTGGTTTACAA
1 AATTACCA-AAATACCCTTGGTTTGTAA
** *
68021054 AATTACTGAAATACCCTTGGTTTGTAG
1 AATTACCAAAATACCCTTGGTTTGTAA
* *
68021081 ATTTACCAAAACACCCTTG
1 AATTACCAAAATACCCTTG
68021100 TAGGATGAAA
Statistics
Matches: 199, Mismatches: 34, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
27 174 0.87
28 8 0.04
29 17 0.09
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGGTTTGTAA
Found at i:68021943 original size:20 final size:20
Alignment explanation
Indices: 68021912--68021988 Score: 118
Period size: 20 Copynumber: 3.9 Consensus size: 20
68021902 ACAAGATTGA
*
68021912 TATGATATGCACATGATATG
1 TATGAAATGCACATGATATG
* *
68021932 TATAAAATGCACATGATAAG
1 TATGAAATGCACATGATATG
*
68021952 TATGAAATGCACATGATATA
1 TATGAAATGCACATGATATG
68021972 TATGAAATGCACATGAT
1 TATGAAATGCACATGAT
68021989 GTATTCATAA
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 51 1.00
ACGTcount: A:0.43, C:0.10, G:0.17, T:0.30
Consensus pattern (20 bp):
TATGAAATGCACATGATATG
Found at i:68023061 original size:23 final size:24
Alignment explanation
Indices: 68023026--68023129 Score: 140
Period size: 23 Copynumber: 4.4 Consensus size: 24
68023016 CTGGAGGCCT
*
68023026 AGCCTCTTTTAATAACTGGGGCA-A
1 AGCC-CTTTTAATAACTGAGGCATA
*
68023050 AGCCCTTTTAATAACTTAGGCATA
1 AGCCCTTTTAATAACTGAGGCATA
* * *
68023074 TGCCCTTTTAATAATTGGGGCATA
1 AGCCCTTTTAATAACTGAGGCATA
68023098 A-CCCTTTTAATAACTGAGGCATA
1 AGCCCTTTTAATAACTGAGGCATA
68023121 AGCCCTTTT
1 AGCCCTTTT
68023130 GTACTTCCTC
Statistics
Matches: 69, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
23 37 0.54
24 32 0.46
ACGTcount: A:0.29, C:0.21, G:0.16, T:0.34
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGAGGCATA
Found at i:68023085 original size:47 final size:47
Alignment explanation
Indices: 68023026--68023129 Score: 156
Period size: 47 Copynumber: 2.2 Consensus size: 47
68023016 CTGGAGGCCT
*
68023026 AGCCTCTTTTAATAACTGGGGCA-AAGCCCTTTTAATAACTTAGGCATA
1 AGCC-CTTTTAATAACTGGGGCATAA-CCCTTTTAATAACTGAGGCATA
* *
68023074 TGCCCTTTTAATAATTGGGGCATAACCCTTTTAATAACTGAGGCATA
1 AGCCCTTTTAATAACTGGGGCATAACCCTTTTAATAACTGAGGCATA
68023121 AGCCCTTTT
1 AGCCCTTTT
68023130 GTACTTCCTC
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
47 46 0.90
48 5 0.10
ACGTcount: A:0.29, C:0.21, G:0.16, T:0.34
Consensus pattern (47 bp):
AGCCCTTTTAATAACTGGGGCATAACCCTTTTAATAACTGAGGCATA
Found at i:68023210 original size:11 final size:11
Alignment explanation
Indices: 68023179--68023234 Score: 66
Period size: 11 Copynumber: 5.5 Consensus size: 11
68023169 TTATGAATAC
68023179 ATCATGTGCAT
1 ATCATGTGCAT
*
68023190 ATCA--TACAT
1 ATCATGTGCAT
68023199 ATCATGTGCAT
1 ATCATGTGCAT
*
68023210 ATCA--TACAT
1 ATCATGTGCAT
68023219 ATCATGTGCAT
1 ATCATGTGCAT
68023230 ATCAT
1 ATCAT
68023235 ATTAATCAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
9 16 0.43
11 21 0.57
ACGTcount: A:0.34, C:0.20, G:0.11, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:68023242 original size:20 final size:20
Alignment explanation
Indices: 68023179--68023235 Score: 114
Period size: 20 Copynumber: 2.9 Consensus size: 20
68023169 TTATGAATAC
68023179 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
68023199 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
68023219 ATCATGTGCATATCATA
1 ATCATGTGCATATCATA
68023236 TTAATCAATG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.35, C:0.19, G:0.11, T:0.35
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:68023322 original size:25 final size:24
Alignment explanation
Indices: 68023283--68023330 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
68023273 TTAATTAAAC
* *
68023283 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATGGTC-TTTTTA
68023308 CCTAGGGGCAAAATGGTCTTTTT
1 CCTAGGGGCAAAATGGTCTTTTT
68023331 CATATTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 5 0.24
25 16 0.76
ACGTcount: A:0.23, C:0.15, G:0.25, T:0.38
Consensus pattern (24 bp):
CCTAGGGGCAAAATGGTCTTTTTA
Found at i:68025117 original size:24 final size:23
Alignment explanation
Indices: 68025054--68025117 Score: 60
Period size: 25 Copynumber: 2.7 Consensus size: 23
68025044 ATGGCCGAGT
68025054 TTATTGAAAAG-GGCTTTGCCCCA
1 TTATT-AAAAGAGGCTTTGCCCCA
*
68025077 TT-TTACCAAAAACGGCTTTGCCCCA
1 TTATTA--AAAGA-GGCTTTGCCCCA
68025102 GTTATTAAAAGAGGCT
1 -TTATTAAAAGAGGCT
68025118 AAGCCTCCAG
Statistics
Matches: 33, Mismatches: 2, Indels: 11
0.72 0.04 0.24
Matches are distributed among these distances:
21 1 0.03
22 2 0.06
23 5 0.15
24 4 0.12
25 16 0.48
26 2 0.06
27 3 0.09
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.30
Consensus pattern (23 bp):
TTATTAAAAGAGGCTTTGCCCCA
Found at i:68025329 original size:42 final size:42
Alignment explanation
Indices: 68025249--68025336 Score: 113
Period size: 42 Copynumber: 2.1 Consensus size: 42
68025239 TAGTCTCCCC
* * ** * *
68025249 AAATGGGCTTGCATACATTCATTGGTATTTCATATGATATTG
1 AAATAGGCTTGCATACATCCATTGACATTACATATGATACTG
*
68025291 AAATAGGCTTGCATACATCCATTGACATTACATGTGATACTG
1 AAATAGGCTTGCATACATCCATTGACATTACATATGATACTG
68025333 AAAT
1 AAAT
68025337 GGGCCTATGG
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35
Consensus pattern (42 bp):
AAATAGGCTTGCATACATCCATTGACATTACATATGATACTG
Found at i:68025397 original size:31 final size:31
Alignment explanation
Indices: 68025362--68025473 Score: 188
Period size: 31 Copynumber: 3.6 Consensus size: 31
68025352 ACCGTTTACA
68025362 GAAAAGGCTTCGGCCCAGTGAAATGATTTAT
1 GAAAAGGCTTCGGCCCAGTGAAATGATTTAT
*
68025393 GAAAAGGCTTTGGCCCAGTGAAATGATTTAT
1 GAAAAGGCTTCGGCCCAGTGAAATGATTTAT
* * *
68025424 GAAAAGGCTTCAGCCCAATGATATGATTTAT
1 GAAAAGGCTTCGGCCCAGTGAAATGATTTAT
68025455 GAAAAGGCTTCGGCCCAGT
1 GAAAAGGCTTCGGCCCAGT
68025474 AACTGTTAAA
Statistics
Matches: 74, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 74 1.00
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26
Consensus pattern (31 bp):
GAAAAGGCTTCGGCCCAGTGAAATGATTTAT
Found at i:68029521 original size:24 final size:24
Alignment explanation
Indices: 68029494--68029539 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
68029484 TATAATATGG
* * *
68029494 AAATGACTATTTTGCCCCTAGGTA
1 AAATGACCATTATACCCCTAGGTA
68029518 AAATGACCATTATACCCCTAGG
1 AAATGACCATTATACCCCTAGG
68029540 GTTTAATTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.28
Consensus pattern (24 bp):
AAATGACCATTATACCCCTAGGTA
Found at i:68029683 original size:25 final size:24
Alignment explanation
Indices: 68029650--68029707 Score: 82
Period size: 24 Copynumber: 2.4 Consensus size: 24
68029640 AGGAAGTGCA
68029650 AAAAGGGCTTTTGCCCCAGTTTATC
1 AAAAGGGCTTTTGCCCCAG-TTATC
*
68029675 AAAAGGGC-TTTGCCCCAGTTATT
1 AAAAGGGCTTTTGCCCCAGTTATC
68029698 AAAAGAGGCT
1 AAAAG-GGCT
68029708 AGGCCTCGAG
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
23 9 0.30
24 13 0.43
25 8 0.27
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTTTGCCCCAGTTATC
Found at i:68029953 original size:31 final size:30
Alignment explanation
Indices: 68029915--68029998 Score: 132
Period size: 31 Copynumber: 2.7 Consensus size: 30
68029905 CGTTTACAGT
68029915 AAAGGCTTCGGCCCAGTAATATGAAATAAGA
1 AAAGGCTTCGGCCCAGT-ATATGAAATAAGA
* *
68029946 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGT-ATATGAAATAAGA
68029977 AAAGGCTTCGGCCCAGTATATG
1 AAAGGCTTCGGCCCAGTATATG
68029999 CTGAGATTGA
Statistics
Matches: 49, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
30 4 0.08
31 45 0.92
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.23
Consensus pattern (30 bp):
AAAGGCTTCGGCCCAGTATATGAAATAAGA
Found at i:68035232 original size:35 final size:35
Alignment explanation
Indices: 68035125--68035395 Score: 256
Period size: 35 Copynumber: 7.7 Consensus size: 35
68035115 CATATGGCCA
* * *
68035125 AATATATAACTTCAATAT-ACCATCACATGTAACCT
1 AATATACAAGTTCAATATAACC-TCACATGTAACCG
* * * * * * **
68035160 AATGTTCAAGTTCAATAAAACATCTCATATGGCCG
1 AATATACAAGTTCAATATAACCTCACATGTAACCG
* * *
68035195 AATATACAAATTCCATATAATCTCACATGTAACCG
1 AATATACAAGTTCAATATAACCTCACATGTAACCG
* *
68035230 AATATACAAGTTCAATATAAGCTCACATGTAATCG
1 AATATACAAGTTCAATATAACCTCACATGTAACCG
* * **
68035265 AATACACAAGTTCAATATAACCTCACATGCAGTCG
1 AATATACAAGTTCAATATAACCTCACATGTAACCG
* * *
68035300 AATATACAAGTTCAATAAGTAAGCTCACATTTAATCG
1 AATATACAAGTTCAAT-A-TAACCTCACATGTAACCG
* * * * *
68035337 AATACACAAGTTCAATATAACCCCTCATGCAGCCG
1 AATATACAAGTTCAATATAACCTCACATGTAACCG
68035372 AATATACAAGTTCAATATAACCTC
1 AATATACAAGTTCAATATAACCTC
68035396 CCATATACTT
Statistics
Matches: 188, Mismatches: 45, Indels: 6
0.79 0.19 0.03
Matches are distributed among these distances:
35 155 0.82
36 4 0.02
37 29 0.15
ACGTcount: A:0.41, C:0.22, G:0.09, T:0.27
Consensus pattern (35 bp):
AATATACAAGTTCAATATAACCTCACATGTAACCG
Found at i:68035244 original size:105 final size:105
Alignment explanation
Indices: 68035125--68035395 Score: 260
Period size: 107 Copynumber: 2.6 Consensus size: 105
68035115 CATATGGCCA
* * * *** *
68035125 AATATATAACTTCAATATACCATCACATGTAACCTAATGTTCAAGTTCAATAAAACATCTCATAT
1 AATATACAAGTTCAATATACC-TCACATGTAACCGAATACACAAGTTCAATAAAAC--CTCACAT
* *
68035190 G-GCCGAATATACAAATTCCAT-A-TAATCTCACATGTAACCG
63 GAGCCGAATATACAAATTCAATAAGTAAGCTCACATGTAACCG
* * *
68035230 AATATACAAGTTCAATATAAGCTCACATGTAATCGAATACACAAGTTCAATATAACCTCACATGC
1 AATATACAAGTTCAATAT-ACCTCACATGTAACCGAATACACAAGTTCAATAAAACCTCACATG-
* * * *
68035295 AGTCGAATATACAAGTTCAATAAGTAAGCTCACATTTAATCG
64 AGCCGAATATACAAATTCAATAAGTAAGCTCACATGTAACCG
* * * * * * *
68035337 AATACACAAGTTCAATATAACCCCTCATGCAGCCGAATATACAAGTTCAATATAACCTC
1 AATATACAAGTTCAATAT-ACCTCACATGTAACCGAATACACAAGTTCAATAAAACCTC
68035396 CCATATACTT
Statistics
Matches: 137, Mismatches: 24, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
103 7 0.05
105 61 0.45
106 3 0.02
107 66 0.48
ACGTcount: A:0.41, C:0.22, G:0.09, T:0.27
Consensus pattern (105 bp):
AATATACAAGTTCAATATACCTCACATGTAACCGAATACACAAGTTCAATAAAACCTCACATGAG
CCGAATATACAAATTCAATAAGTAAGCTCACATGTAACCG
Found at i:68035352 original size:72 final size:71
Alignment explanation
Indices: 68035193--68035388 Score: 286
Period size: 72 Copynumber: 2.8 Consensus size: 71
68035183 CTCATATGGC
* * * * * *
68035193 CGAATATACAAATTCCATATAATCTCACATGTAACCGAATATACAAGTTCAAT-ATAAGCTCACA
1 CGAATACACAAGTTCAATATAACCTCACATGCAGCCGAATATACAAGTTCAATAATAAGCTCACA
68035257 TGTAAT
66 TGTAAT
*
68035263 CGAATACACAAGTTCAATATAACCTCACATGCAGTCGAATATACAAGTTCAATAAGTAAGCTCAC
1 CGAATACACAAGTTCAATATAACCTCACATGCAGCCGAATATACAAGTTCAATAA-TAAGCTCAC
*
68035328 ATTTAAT
65 ATGTAAT
* *
68035335 CGAATACACAAGTTCAATATAACCCCTCATGCAGCCGAATATACAAGTTCAATA
1 CGAATACACAAGTTCAATATAACCTCACATGCAGCCGAATATACAAGTTCAATA
68035389 TAACCTCCCA
Statistics
Matches: 113, Mismatches: 11, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
70 46 0.41
71 1 0.01
72 66 0.58
ACGTcount: A:0.42, C:0.22, G:0.10, T:0.26
Consensus pattern (71 bp):
CGAATACACAAGTTCAATATAACCTCACATGCAGCCGAATATACAAGTTCAATAATAAGCTCACA
TGTAAT
Found at i:68035374 original size:107 final size:105
Alignment explanation
Indices: 68035193--68035395 Score: 271
Period size: 107 Copynumber: 1.9 Consensus size: 105
68035183 CTCATATGGC
* * * * *
68035193 CGAATATACAAATTCCATATAATCTCACATGTAACCGAATATACAAGTTCAATATAAGCTCACAT
1 CGAATATACAAATTCAATATAAGCTCACATGTAACCGAATACACAAGTTCAATATAACCCCACAT
* *
68035258 GTAATCGAATACACAAGTTCAATATAACCTCACATGCAGT
66 GCAACCGAATACACAAGTTCAATATAACCTCACATGCAGT
* * * *
68035298 CGAATATACAAGTTCAATAAGTAAGCTCACATTTAATCGAATACACAAGTTCAATATAACCCCTC
1 CGAATATACAAATTCAAT-A-TAAGCTCACATGTAACCGAATACACAAGTTCAATATAACCCCAC
* *
68035363 ATGCAGCCGAATATACAAGTTCAATATAACCTC
64 ATGCAACCGAATACACAAGTTCAATATAACCTC
68035396 CCATATACTT
Statistics
Matches: 83, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
105 16 0.19
106 1 0.01
107 66 0.80
ACGTcount: A:0.41, C:0.23, G:0.10, T:0.26
Consensus pattern (105 bp):
CGAATATACAAATTCAATATAAGCTCACATGTAACCGAATACACAAGTTCAATATAACCCCACAT
GCAACCGAATACACAAGTTCAATATAACCTCACATGCAGT
Found at i:68041449 original size:20 final size:23
Alignment explanation
Indices: 68041401--68041450 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 23
68041391 ATCATGTTAG
* *
68041401 ATGTTAGAATTGGATTGGTTATA
1 ATGTTTGAATTGGACTGGTTATA
68041424 ATGTTTGAATTGG-CTGG-TAT-
1 ATGTTTGAATTGGACTGGTTATA
68041444 ATGTTTG
1 ATGTTTG
68041451 CAAGTATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 7 0.28
21 3 0.12
22 3 0.12
23 12 0.48
ACGTcount: A:0.24, C:0.02, G:0.28, T:0.46
Consensus pattern (23 bp):
ATGTTTGAATTGGACTGGTTATA
Found at i:68044016 original size:42 final size:41
Alignment explanation
Indices: 68043942--68044093 Score: 142
Period size: 42 Copynumber: 3.5 Consensus size: 41
68043932 CCAAAGCTAC
* * *
68043942 GTCCCAGACATGGTCTTACATGGGTCCGCATATCAATGCCAT
1 GTCCCAGACATGGTCTTATATGGGT-CTCATATCGATGCCAT
* * *
68043984 ATCCCAGATATGGTCTTATATGAAGTCTCATATCGGTGCTGATGCCAT
1 GTCCCAGACATGGTCTTATATG-GGTCTCATA----T-C-GATGCCAT
*
68044032 GTCCCAGACATGGTCTTATATGGGACCTCATATCGATGCCAT
1 GTCCCAGACATGGTCTTATATGGG-TCTCATATCGATGCCAT
* *
68044074 GTTCCAGATATGGTCTTATA
1 GTCCCAGACATGGTCTTATA
68044094 CAAAATCACT
Statistics
Matches: 90, Mismatches: 12, Indels: 16
0.76 0.10 0.14
Matches are distributed among these distances:
42 50 0.56
43 3 0.03
44 1 0.01
46 1 0.01
47 2 0.02
48 33 0.37
ACGTcount: A:0.24, C:0.24, G:0.21, T:0.31
Consensus pattern (41 bp):
GTCCCAGACATGGTCTTATATGGGTCTCATATCGATGCCAT
Found at i:68044121 original size:90 final size:90
Alignment explanation
Indices: 68043942--68044146 Score: 216
Period size: 90 Copynumber: 2.3 Consensus size: 90
68043932 CCAAAGCTAC
* * **
68043942 GTCCCAGACATGGTCTTACATGGGTCCGCATATCAATGCCATATCCCAGATATGGTCTTATATGA
1 GTCCCAGACATGGTCTTATATGGGACCGCATATCAATGCCATATCCCAGATATGGTCTTATACAA
* * * *
68044007 AGTCTCATATCGGTGCTGATGCCAT
66 AATCACATATCGATGCTGAAGCCAT
* * * *
68044032 GTCCCAGACATGGTCTTATATGGGACCTCATATCGATGCCATGTTCCAGATATGGTCTTATACAA
1 GTCCCAGACATGGTCTTATATGGGACCGCATATCAATGCCATATCCCAGATATGGTCTTATACAA
*
68044097 AATCACTTAAT-GATG-TCGAAGCCAT
66 AATCACAT-ATCGATGCT-GAAGCCAT
* ** * *
68044122 ATCCTTGATATGGTCTTATACGGGA
1 GTCCCAGACATGGTCTTATATGGGA
68044147 TCAGATATCA
Statistics
Matches: 95, Mismatches: 18, Indels: 4
0.81 0.15 0.03
Matches are distributed among these distances:
89 1 0.01
90 92 0.97
91 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.31
Consensus pattern (90 bp):
GTCCCAGACATGGTCTTATATGGGACCGCATATCAATGCCATATCCCAGATATGGTCTTATACAA
AATCACATATCGATGCTGAAGCCAT
Found at i:68044203 original size:48 final size:48
Alignment explanation
Indices: 68044151--68044287 Score: 157
Period size: 48 Copynumber: 2.8 Consensus size: 48
68044141 ACGGGATCAG
* * *
68044151 ATATCAGTGCCGATGCCATGTCCCAGACACGGTCTTACACTAGCACAC
1 ATATCAGTGTCGATGCCATGTCCTAGACATGGTCTTACACTAGCACAC
*** * * * *
68044199 ATATCAACATCGATGCCATGTCCTAGACATGGCCTTACACTGGCTCTC
1 ATATCAGTGTCGATGCCATGTCCTAGACATGGTCTTACACTAGCACAC
* *
68044247 ATCTCAGATGTTGATGCCATGTCCTAGACATGGTCTTACAC
1 ATATCAG-TGTCGATGCCATGTCCTAGACATGGTCTTACAC
68044288 AGAATCACAT
Statistics
Matches: 72, Mismatches: 16, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
48 43 0.60
49 29 0.40
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (48 bp):
ATATCAGTGTCGATGCCATGTCCTAGACATGGTCTTACACTAGCACAC
Found at i:68044217 original size:96 final size:97
Alignment explanation
Indices: 68044112--68044287 Score: 210
Period size: 96 Copynumber: 1.8 Consensus size: 97
68044102 CTTAATGATG
* * * * *
68044112 TCGAAGCCATATCCTTGATATGGTCTTATACGGGATCAGATATCAG-TGCCGATGCCATGTCCCA
1 TCGAAGCCATATCCTAGACATGGCCTTACACGGGATCACATATCAGATGCCGATGCCATGTCCCA
68044176 GACACGGTCTTACACTAGCACACATATCAACA
66 GACACGGTCTTACACTAGCACACATATCAACA
* * * * * * ** *
68044208 TCGATGCCATGTCCTAGACATGGCCTTACACTGGCTCTCATCTCAGATGTTGATGCCATGTCCTA
1 TCGAAGCCATATCCTAGACATGGCCTTACACGGGATCACATATCAGATGCCGATGCCATGTCCCA
*
68044273 GACATGGTCTTACAC
66 GACACGGTCTTACAC
68044288 AGAATCACAT
Statistics
Matches: 64, Mismatches: 15, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
96 35 0.55
97 29 0.45
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.27
Consensus pattern (97 bp):
TCGAAGCCATATCCTAGACATGGCCTTACACGGGATCACATATCAGATGCCGATGCCATGTCCCA
GACACGGTCTTACACTAGCACACATATCAACA
Found at i:68054788 original size:46 final size:46
Alignment explanation
Indices: 68054738--68054913 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
68054728 TGGTTGAGCA
68054738 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
68054784 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
68054829 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
68054877 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
68054914 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 64 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:68054894 original size:93 final size:93
Alignment explanation
Indices: 68054735--68054905 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
68054725 GGATGGTTGA
* *
68054735 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
68054800 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
68054828 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
68054893 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
68054906 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:68057900 original size:15 final size:15
Alignment explanation
Indices: 68057861--68057940 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
68057851 GTATCTTGGG
*
68057861 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
68057876 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
* *
68057891 TTTCTTTATTCCGGG
1 TTTCTTTATTCTGGA
*
68057906 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
68057921 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
68057935 TTTCTT
1 TTTCTT
68057941 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
14 10 0.19
15 41 0.77
16 2 0.04
ACGTcount: A:0.10, C:0.19, G:0.14, T:0.57
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:68057930 original size:30 final size:30
Alignment explanation
Indices: 68057852--68057939 Score: 92
Period size: 30 Copynumber: 3.0 Consensus size: 30
68057842 CATAGTATCG
* * *
68057852 TATCTTGGGTTTCTTTA-TCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCC-GGATTTCTC
*
68057882 TAT-TCTGGATTTCTTTATTCCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCCGGATTTCTC
*
68057912 TATCTTGGATTTCTTTATT-CGGTTTTCT
1 TATCTTGGATTTCTTTATTCCGGATTTCT
68057940 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
29 9 0.18
30 37 0.74
31 4 0.08
ACGTcount: A:0.10, C:0.18, G:0.16, T:0.56
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCCGGATTTCTC
Found at i:68060366 original size:46 final size:46
Alignment explanation
Indices: 68060316--68060491 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
68060306 TGGTTGAGCA
68060316 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
68060362 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
68060407 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
68060455 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
68060492 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 64 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:68060472 original size:93 final size:93
Alignment explanation
Indices: 68060313--68060483 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
68060303 GGATGGTTGA
* *
68060313 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
68060378 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
68060406 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
68060471 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
68060484 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:68067668 original size:13 final size:13
Alignment explanation
Indices: 68067650--68067700 Score: 75
Period size: 13 Copynumber: 3.9 Consensus size: 13
68067640 TTTGGTAATT
*
68067650 CTTTTGACAAGTG
1 CTTTTGAAAAGTG
68067663 CTTTTGAAAAGTG
1 CTTTTGAAAAGTG
* *
68067676 CTATGGAAAAGTG
1 CTTTTGAAAAGTG
68067689 CTTTTGAAAAGT
1 CTTTTGAAAAGT
68067701 TTGATTTAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
13 33 1.00
ACGTcount: A:0.31, C:0.10, G:0.24, T:0.35
Consensus pattern (13 bp):
CTTTTGAAAAGTG
Found at i:68075204 original size:8 final size:8
Alignment explanation
Indices: 68075187--68075226 Score: 53
Period size: 8 Copynumber: 5.0 Consensus size: 8
68075177 CTAGATCGGC
*
68075187 AAAAGTCG
1 AAAAGCCG
68075195 AAAAGCCG
1 AAAAGCCG
*
68075203 AAATGCCG
1 AAAAGCCG
*
68075211 AAATGCCG
1 AAAAGCCG
68075219 AAAAGCCG
1 AAAAGCCG
68075227 GTATTTTGGT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 29 1.00
ACGTcount: A:0.45, C:0.23, G:0.25, T:0.07
Consensus pattern (8 bp):
AAAAGCCG
Found at i:68075683 original size:28 final size:26
Alignment explanation
Indices: 68075643--68075748 Score: 124
Period size: 27 Copynumber: 3.9 Consensus size: 26
68075633 GGAAGCGTCT
*
68075643 TGGTGGCTATGCCACAAATTATCTGATC
1 TGGTGGCTCTGCCAC--ATTATCTGATC
68075671 TGGTGGCTCTGCCACATATATCT-ATTC
1 TGGTGGCTCTGCCACAT-TATCTGA-TC
68075698 TGGTGGCTCTGCCACGATTATCTGTATC
1 TGGTGGCTCTGCCAC-ATTATCTG-ATC
* *
68075726 TGGTGACTCTGTCACATTATCTG
1 TGGTGGCTCTGCCACATTATCTG
68075749 TTCTTACAGC
Statistics
Matches: 70, Mismatches: 3, Indels: 11
0.83 0.04 0.13
Matches are distributed among these distances:
26 3 0.04
27 35 0.50
28 31 0.44
29 1 0.01
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.36
Consensus pattern (26 bp):
TGGTGGCTCTGCCACATTATCTGATC
Found at i:68075727 original size:55 final size:54
Alignment explanation
Indices: 68075643--68075752 Score: 150
Period size: 55 Copynumber: 2.0 Consensus size: 54
68075633 GGAAGCGTCT
*
68075643 TGGTGGCTATGCCACAAATTATCTGATCTGGTGGCTCTGCCACATATATCTATTC
1 TGGTGGCTATGCCACAAATTATCTGATCTGGTGACTCTGCCACAT-TATCTATTC
* * * *
68075698 TGGTGGCTCTGCCAC-GATTATCTGTATCTGGTGACTCTGTCACATTATCTGTTC
1 TGGTGGCTATGCCACAAATTATCTG-ATCTGGTGACTCTGCCACATTATCTATTC
68075752 T
1 T
68075753 TACAGCCATG
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
54 17 0.35
55 32 0.65
ACGTcount: A:0.18, C:0.24, G:0.21, T:0.37
Consensus pattern (54 bp):
TGGTGGCTATGCCACAAATTATCTGATCTGGTGACTCTGCCACATTATCTATTC
Found at i:68080847 original size:40 final size:40
Alignment explanation
Indices: 68080792--68081001 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
68080782 AACATTGGAA
68080792 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
68080832 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
68080872 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
68080912 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
68080951 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
68080992 CTATATCCGG
1 ATATATCCGG
68081002 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:68084147 original size:47 final size:47
Alignment explanation
Indices: 68084093--68084380 Score: 405
Period size: 47 Copynumber: 6.1 Consensus size: 47
68084083 TTAGGATTTT
** *
68084093 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
68084140 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
68084187 ATGTGGTGAATATGAACATGCATTTATGTGATAAGGCCGAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
68084234 ATGTGATGAATGTGAACATGCATATATGTGATAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
68084281 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * *
68084328 ATGTGGTGAATATGAACATGCATATATCTGGTAAAGCCGAATGGTCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
68084375 ATGTGA
1 ATGTGA
68084381 AATATTTATA
Statistics
Matches: 211, Mismatches: 30, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 211 1.00
ACGTcount: A:0.32, C:0.11, G:0.29, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:68084195 original size:25 final size:25
Alignment explanation
Indices: 68084120--68084195 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
68084110 GTGTATATAT
68084120 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
68084145 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
68084167 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
68084192 GTGA
1 GTGA
68084196 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:68084315 original size:141 final size:141
Alignment explanation
Indices: 68084092--68084380 Score: 479
Period size: 141 Copynumber: 2.0 Consensus size: 141
68084082 TTTAGGATTT
** * *
68084092 TATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGC
1 TATGTGATGAATGTGAACATGCATATATGTGATAAAGCCGAATGGCCAATGTGATGAATGTGAGC
* * *
68084157 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATTTATGTGATAAG
66 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATCTGATAAA
68084222 GCCGAATGGCC
131 GCCGAATGGCC
*
68084233 TATGTGATGAATGTGAACATGCATATATGTGATAAAGCCGAATGGCTAATGTGATGAATGTGAGC
1 TATGTGATGAATGTGAACATGCATATATGTGATAAAGCCGAATGGCCAATGTGATGAATGTGAGC
*
68084298 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATCTGGTAAA
66 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATCTGATAAA
*
68084363 GCCGAATGGTC
131 GCCGAATGGCC
*
68084374 AATGTGA
1 TATGTGA
68084381 AATATTTATA
Statistics
Matches: 137, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
141 137 1.00
ACGTcount: A:0.32, C:0.11, G:0.29, T:0.28
Consensus pattern (141 bp):
TATGTGATGAATGTGAACATGCATATATGTGATAAAGCCGAATGGCCAATGTGATGAATGTGAGC
ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATCTGATAAA
GCCGAATGGCC
Found at i:68084431 original size:141 final size:139
Alignment explanation
Indices: 68084093--68084431 Score: 434
Period size: 141 Copynumber: 2.4 Consensus size: 139
68084083 TTAGGATTTT
* ** * *
68084093 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
1 ATGTGATGAATATGAACATG-ATATATGTGATAAAGCCGAATGG-CTATGTGATGAATGTGAGCA
* * *
68084158 TGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATTTATGTGATAAGG
64 TGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATCTGATAAAG
*
68084223 CCGAATGGCCT
129 CCGAATGGCCA
*
68084234 ATGTGATGAATGTGAACATGCATATATGTGATAAAGCCGAATGGCTAATGTGATGAATGTGAGCA
1 ATGTGATGAATATGAACATG-ATATATGTGATAAAGCCGAATGGCT-ATGTGATGAATGTGAGCA
*
68084299 TGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATCTGGTAAAG
64 TGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATCTGATAAAG
*
68084364 CCGAATGGTCA
129 CCGAATGGCCA
* *
68084375 ATGTGAAAT-ATTTATATGAGATATG-TATATGTGGTAAAGCCGAATGGCTA-GT-ATGAA
1 ATGTG--ATGA---ATATGA-ACATGATATATGTGATAAAGCCGAATGGCTATGTGATGAA
68084432 ATATGTAGGC
Statistics
Matches: 177, Mismatches: 14, Indels: 14
0.86 0.07 0.07
Matches are distributed among these distances:
140 1 0.01
141 138 0.78
142 3 0.02
143 3 0.02
144 23 0.13
145 5 0.03
146 4 0.02
ACGTcount: A:0.33, C:0.11, G:0.28, T:0.29
Consensus pattern (139 bp):
ATGTGATGAATATGAACATGATATATGTGATAAAGCCGAATGGCTATGTGATGAATGTGAGCATG
CATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATCTGATAAAGCC
GAATGGCCA
Found at i:68084628 original size:37 final size:37
Alignment explanation
Indices: 68084585--68084765 Score: 265
Period size: 37 Copynumber: 4.9 Consensus size: 37
68084575 GGAAATATAT
*
68084585 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
68084622 TTCGGGTAAGACCCGATGACTACGTGTGAAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
68084659 TCCGGGTAAGACCCGATGACTACGTGTGGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
68084696 TCCGGGTAAGACCCGATGACTACGTG-GGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * * *
68084732 TCCAGGTAAGACCCTATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
68084766 TCGTCTGAGC
Statistics
Matches: 131, Mismatches: 12, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
36 30 0.23
37 101 0.77
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:68086071 original size:40 final size:40
Alignment explanation
Indices: 68086011--68086480 Score: 773
Period size: 40 Copynumber: 11.8 Consensus size: 40
68086001 GAGAATTGAG
*
68086011 AGTGATATATCCGGGATAAATCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
68086051 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
*
68086091 AGTGATATATCCGGGCTAAATCCCAAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
*
68086131 AGTGATATATCCGGGCTAAATCCCAAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
* * *
68086171 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
68086211 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
*
68086251 AGTGATGTATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
* * *
68086291 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTG-T
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
68086330 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
68086370 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
* * *
68086410 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
* * **
68086450 AGTGATGTATCCGAGCTAGGTCCC-AAGAGCA
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCA
68086481 ATCATGCTGG
Statistics
Matches: 408, Mismatches: 21, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
39 43 0.11
40 365 0.89
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
Found at i:68090636 original size:47 final size:47
Alignment explanation
Indices: 68090582--68090867 Score: 416
Period size: 47 Copynumber: 6.1 Consensus size: 47
68090572 TTAGGATTTT
** *
68090582 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
68090629 ATGTGATGAATGTGAGCATGCATATGTGTGATAA-GCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
68090675 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
68090722 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGG-CA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
68090768 ATGTGATGAATGT-AAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-CATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
68090815 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGTCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
68090862 ATGTGA
1 ATGTGA
68090868 AATATATATA
Statistics
Matches: 214, Mismatches: 21, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
45 2 0.01
46 83 0.39
47 127 0.59
48 2 0.01
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:68090700 original size:93 final size:92
Alignment explanation
Indices: 68090603--68090867 Score: 397
Period size: 93 Copynumber: 2.8 Consensus size: 92
68090593 GTGAATGTGT
* *
68090603 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGCCGA
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGCCGA
*
68090668 ATGGCCAATGTGGTGAATATGAA-CATGC
66 ATGG-CAATGTGATGAATAT-AAGCATGC
*
68090696 ATATATGTGATAAGGCCGAATGGCCTATGTGATGAATGTGAACATGCATATATGTGATAAGGCCG
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAA-GCCG
*
68090761 AATGGCAATGTGATGAATGTAAGCATGC
65 AATGGCAATGTGATGAATATAAGCATGC
* * * *
68090789 ATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCG
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGAT-AAGCCG
68090854 AATGGTCAATGTGA
65 AATGG-CAATGTGA
68090868 AATATATATA
Statistics
Matches: 158, Mismatches: 10, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
92 2 0.01
93 137 0.87
94 19 0.12
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (92 bp):
ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGCCGA
ATGGCAATGTGATGAATATAAGCATGC
Found at i:68090807 original size:140 final size:140
Alignment explanation
Indices: 68090581--68090867 Score: 486
Period size: 140 Copynumber: 2.0 Consensus size: 140
68090571 TTTAGGATTT
** * *
68090581 TATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGC
1 TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTAAGC
*
68090646 ATGCATATGTGTGATAAGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAGG
66 ATGCATATGTGTGATAAGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAAG
68090711 CCGAATGGCC
131 CCGAATGGCC
68090721 TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGG-CAATGTGATGAATGTAAGC
1 TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTAAGC
*
68090785 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGGTAAA
66 ATGCATATGTGTGATAA-GCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAA
*
68090850 GCCGAATGGTC
130 GCCGAATGGCC
*
68090861 AATGTGA
1 TATGTGA
68090868 AATATATATA
Statistics
Matches: 138, Mismatches: 8, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
139 35 0.25
140 103 0.75
ACGTcount: A:0.32, C:0.11, G:0.29, T:0.28
Consensus pattern (140 bp):
TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTAAGC
ATGCATATGTGTGATAAGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAAG
CCGAATGGCC
Found at i:68091130 original size:37 final size:37
Alignment explanation
Indices: 68091075--68091211 Score: 196
Period size: 38 Copynumber: 3.8 Consensus size: 37
68091065 AATATATTCT
*
68091075 GGGTGAGACCCGATGACTACGTGTGGAGATTATGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
68091112 GGGTAAGACCCGATGACTACGTGTGAAGAGA-TATGTCC
1 GGGTAAGACCCGATGACTACGTGTG--GAGATTATGTCC
*
68091150 GGGTAAGACCCGATGACTACGTGTGGAGAGTATGT--
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
68091185 ---TAAGACCCGATGACTACGTGTGGAGAT
1 GGGTAAGACCCGATGACTACGTGTGGAGAT
68091212 AAGACCCGAT
Statistics
Matches: 95, Mismatches: 2, Indels: 11
0.88 0.02 0.10
Matches are distributed among these distances:
32 26 0.27
36 4 0.04
37 29 0.31
38 32 0.34
39 4 0.04
ACGTcount: A:0.26, C:0.18, G:0.34, T:0.23
Consensus pattern (37 bp):
GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
Found at i:68091221 original size:26 final size:26
Alignment explanation
Indices: 68091153--68091237 Score: 98
Period size: 26 Copynumber: 3.0 Consensus size: 26
68091143 TATGTCCGGG
68091153 TAAGACCCGATGACTACGTGTGGAGAGTA
1 TAAGACCCGATGACTACGTGT-G-GAG-A
68091182 TGTTAAGACCCGATGACTACGTGTGGAGA
1 ---TAAGACCCGATGACTACGTGTGGAGA
* *
68091211 TAAGACCCGATAACTTCGTGTGGAGA
1 TAAGACCCGATGACTACGTGTGGAGA
68091237 T
1 T
68091238 TTCGTCTGAG
Statistics
Matches: 51, Mismatches: 2, Indels: 6
0.86 0.03 0.10
Matches are distributed among these distances:
26 25 0.49
29 1 0.02
30 3 0.06
31 1 0.02
32 21 0.41
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (26 bp):
TAAGACCCGATGACTACGTGTGGAGA
Found at i:68094771 original size:38 final size:39
Alignment explanation
Indices: 68094711--68094807 Score: 121
Period size: 37 Copynumber: 2.6 Consensus size: 39
68094701 TAAAGACCCG
* * *
68094711 CAGGCTTCGTGCTGGTA-AATATCCGGGTTAAATCC-CA
1 CAGGCTTCGTGCTGGTATTATATCAGGGATAAATCCGCA
68094748 CAGGCTTCGTGCTGGTATTATATCAGGGATAAATCCGCA
1 CAGGCTTCGTGCTGGTATTATATCAGGGATAAATCCGCA
* *
68094787 -A-GCCTAGTGCTGGTATTATAT
1 CAGGCTTCGTGCTGGTATTATAT
68094808 TCGAGCCTTC
Statistics
Matches: 53, Mismatches: 5, Indels: 4
0.85 0.08 0.06
Matches are distributed among these distances:
37 35 0.66
38 16 0.30
39 2 0.04
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.30
Consensus pattern (39 bp):
CAGGCTTCGTGCTGGTATTATATCAGGGATAAATCCGCA
Found at i:68094873 original size:43 final size:43
Alignment explanation
Indices: 68094805--68095002 Score: 324
Period size: 43 Copynumber: 4.6 Consensus size: 43
68094795 GCTGGTATTA
*
68094805 TATTCGAGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGATGTG
* *
68094848 TATTTGGGCCTTCGTGCCTAGCAGGCTTTGTACCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGATGTG
* *
68094891 TATTCGGGCCTTCGTGCCTAGCAGGCTTTGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGATGTG
* *
68094934 TATTCGGGCTTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGATGTG
*
68094977 TATTCAGGCCTTCGTGCCTAGCAGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGC
68095003 GTAATGCCAG
Statistics
Matches: 146, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 146 1.00
ACGTcount: A:0.12, C:0.24, G:0.32, T:0.32
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGATGTG
Found at i:68100306 original size:27 final size:26
Alignment explanation
Indices: 68100248--68100360 Score: 136
Period size: 27 Copynumber: 4.2 Consensus size: 26
68100238 AGGAAGCGTC
* *
68100248 CTGGTGGCTATGCCACAAATTATCTGAT
1 CTGGTGGCTCTGCCAC--ATTATCTGTT
*
68100276 CTGGTGGCTCTGTCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
68100303 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGT-T
* *
68100331 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
68100357 CTGG
1 CTGG
68100361 CAGCCATGCT
Statistics
Matches: 76, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
26 7 0.09
27 38 0.50
28 31 0.41
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:68100333 original size:55 final size:54
Alignment explanation
Indices: 68100248--68100360 Score: 174
Period size: 55 Copynumber: 2.1 Consensus size: 54
68100238 AGGAAGCGTC
*
68100248 CTGGTGGCTATGCCACAAATTATCTGATCTGGTGGCTCTGTCACATATATCTGTT
1 CTGGTGGCTATGCCACAAATTATCTGATCTGGTGACTCTGTCACAT-TATCTGTT
* *
68100303 CTGGTGGCTCTGCCAC-GATTATCTGTATCTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTATGCCACAAATTATCTG-ATCTGGTGACTCTGTCACATTATCTGTT
68100357 CTGG
1 CTGG
68100361 CAGCCATGCT
Statistics
Matches: 54, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
54 20 0.37
55 34 0.63
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAAATTATCTGATCTGGTGACTCTGTCACATTATCTGTT
Found at i:68106504 original size:12 final size:12
Alignment explanation
Indices: 68106487--68106514 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
68106477 AAGATCTCTA
68106487 CTTATTTGATGC
1 CTTATTTGATGC
68106499 CTTATTTGATGC
1 CTTATTTGATGC
68106511 CTTA
1 CTTA
68106515 CTGAGGCACA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.18, C:0.18, G:0.14, T:0.50
Consensus pattern (12 bp):
CTTATTTGATGC
Found at i:68106786 original size:14 final size:14
Alignment explanation
Indices: 68106767--68106795 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
68106757 AGAGTAAGAT
68106767 TAAAACTTGGTGAG
1 TAAAACTTGGTGAG
68106781 TAAAACTTGGTGAG
1 TAAAACTTGGTGAG
68106795 T
1 T
68106796 GAAATGAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.31
Consensus pattern (14 bp):
TAAAACTTGGTGAG
Found at i:68118401 original size:29 final size:29
Alignment explanation
Indices: 68118369--68118466 Score: 88
Period size: 29 Copynumber: 3.4 Consensus size: 29
68118359 ATACCCTCCG
* *
68118369 AGCTCGCACACCCAGTGCCGCATTTTTCC
1 AGCTCGCACACCCAGTGCCACATATTTCC
* ** *
68118398 AGCTTGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACCCAGTGCCACATATTTCC
* ** * *
68118427 AGCACGCACACTTAGTGCCATATAATTCC
1 AGCTCGCACACCCAGTGCCACATATTTCC
*
68118456 AGCACGCACAC
1 AGCTCGCACAC
68118467 TTAGTGCCGA
Statistics
Matches: 60, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 60 1.00
ACGTcount: A:0.26, C:0.35, G:0.15, T:0.24
Consensus pattern (29 bp):
AGCTCGCACACCCAGTGCCACATATTTCC
Found at i:68118467 original size:29 final size:29
Alignment explanation
Indices: 68118394--68118474 Score: 135
Period size: 29 Copynumber: 2.8 Consensus size: 29
68118384 TGCCGCATTT
** *
68118394 TTCCAGCTTGCACACTTAGTGCCATATAT
1 TTCCAGCACGCACACTTAGTGCCATATAA
68118423 TTCCAGCACGCACACTTAGTGCCATATAA
1 TTCCAGCACGCACACTTAGTGCCATATAA
68118452 TTCCAGCACGCACACTTAGTGCC
1 TTCCAGCACGCACACTTAGTGCC
68118475 GATCTCGTCA
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 49 1.00
ACGTcount: A:0.26, C:0.32, G:0.15, T:0.27
Consensus pattern (29 bp):
TTCCAGCACGCACACTTAGTGCCATATAA
Found at i:68120898 original size:46 final size:45
Alignment explanation
Indices: 68120831--68120997 Score: 187
Period size: 46 Copynumber: 3.6 Consensus size: 45
68120821 GCCCCTAAGG
*
68120831 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAAT
1 GAACTCGGACTCAACTCAACGAGTTCGGGCATT-GCATCCATAAAT
* * *
68120877 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-T-CAC
1 GAACTCGGACTCAACTCAACGAGTTCGG--G-C-A-TTGCATCCATAAAT
* * *
68120924 GAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGGCA-TTGCATCCATAAAT
68120970 GAACTCGGACTCAACTCAACGAGTTCGG
1 GAACTCGGACTCAACTCAACGAGTTCGG
68120998 ATGCTCAACC
Statistics
Matches: 101, Mismatches: 12, Indels: 16
0.78 0.09 0.12
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 1 0.01
46 54 0.53
47 28 0.28
48 2 0.02
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGGGCATTGCATCCATAAAT
Found at i:68120941 original size:93 final size:93
Alignment explanation
Indices: 68120831--68121001 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
68120821 GCCCCTAAGG
* *
68120831 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
68120896 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
68120924 GAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
68120989 CGAGTTCGGATGC
66 CGAGTTCGGATGC
68121002 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:68121455 original size:30 final size:30
Alignment explanation
Indices: 68121421--68121480 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
68121411 ATTTAATACG
68121421 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
68121451 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
68121481 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:68125766 original size:31 final size:31
Alignment explanation
Indices: 68125723--68125786 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
68125713 CCTTTTCATA
68125723 TTTCATAATTCATAACACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
* * *
68125754 TTTCATATTTCATATCACTGGGCTGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
68125785 TT
1 TT
68125787 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCGAAGCCT
Found at i:68126026 original size:24 final size:24
Alignment explanation
Indices: 68125979--68126169 Score: 291
Period size: 24 Copynumber: 8.0 Consensus size: 24
68125969 GCTTTATCAT
*
68125979 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
68126004 ATAACTGGGGCA-AAGCCCTTTTTTA
1 ATAACTGGGGCATAAGCCC--TTTTA
68126029 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
68126052 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
68126076 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
68126100 ATAACTAGGGCAT-AGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
68126123 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
68126147 ATAACTGGGGCATAGGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
68126170 GCACTTCCTC
Statistics
Matches: 156, Mismatches: 4, Indels: 13
0.90 0.02 0.08
Matches are distributed among these distances:
23 46 0.29
24 79 0.51
25 25 0.16
26 6 0.04
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:68126086 original size:47 final size:48
Alignment explanation
Indices: 68125979--68126169 Score: 291
Period size: 47 Copynumber: 4.0 Consensus size: 48
68125969 GCTTTATCAT
*
68125979 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCA-AAGCCCTTTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCC--TTTTA
68126029 ATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
*
68126076 ATAACTGGGGCATAAGCCCTTTTAATAACTAGGGCAT-AGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
*
68126123 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAGGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
68126170 GCACTTCCTC
Statistics
Matches: 133, Mismatches: 4, Indels: 10
0.90 0.03 0.07
Matches are distributed among these distances:
47 70 0.53
48 40 0.30
49 11 0.08
50 12 0.09
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
Found at i:68126113 original size:71 final size:71
Alignment explanation
Indices: 68125979--68126169 Score: 289
Period size: 71 Copynumber: 2.7 Consensus size: 71
68125969 GCTTTATCAT
* *
68125979 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCA-AAGCCCTTTTTTAATAACTGGGGCAT
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCC--TTTTAATAACTAGGGCAT
68126042 AAGCCC-TTTA
62 -AGCCCTTTTA
68126052 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTAGGGCATAGCC
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTAGGGCATAGCC
68126117 CTTTTA
66 CTTTTA
*
68126123 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAGGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
68126170 GCACTTCCTC
Statistics
Matches: 112, Mismatches: 3, Indels: 8
0.91 0.02 0.07
Matches are distributed among these distances:
70 5 0.04
71 67 0.60
72 22 0.20
73 18 0.16
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (71 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTAGGGCATAGCC
CTTTTA
Found at i:68126246 original size:20 final size:20
Alignment explanation
Indices: 68126223--68126281 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
68126213 GAACATCTCG
68126223 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
68126243 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
*
68126263 TGTGCATATTATACATATC
1 TGTGCATATCATACATATC
68126282 TTGTTTATCA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.32, C:0.19, G:0.12, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:68126350 original size:25 final size:25
Alignment explanation
Indices: 68126322--68126369 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
68126312 ATATATAAAC
* * *
68126322 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
68126347 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
68126370 CATACTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:68135471 original size:47 final size:48
Alignment explanation
Indices: 68135412--68135673 Score: 234
Period size: 47 Copynumber: 5.4 Consensus size: 48
68135402 TAATGTAAAA
* * *
68135412 CATGTTTGGGACAT-GCATCGGCCACATTATGAGAGCCAGTGTAAGAC
1 CATGTCTGGGACATGGCATCAGCCACATTATGAGAGCTAGTGTAAGAC
* * **
68135459 CATGTCTAGGACATGACATC-G--GTATTGA-GACGAGTGCTAGTGTAAGA-
1 CATGTCTGGGACATGGCATCAGCCACATT-ATGA-GA--GCTAGTGTAAGAC
* * *
68135506 CATGTCTGGGACAT-GCATCAGCCTCGATGATGATAGCTAGTGTAAGA-
1 CATGTCTGGGACATGGCATCAGCCAC-ATTATGAGAGCTAGTGTAAGAC
*
68135553 CATGTCTGGGACATGGCATCAGCACATATATATACGAGAGCTAGTGTAAGAC
1 CATGTCTGGGACATGGCATCAGC-CACAT-TAT--GAGAGCTAGTGTAAGAC
* * * *
68135605 CATGTCTGGGACATGGCATCAGCCTCGATGATGATAGCCAGTGTAAGAC
1 CATGTCTGGGACATGGCATCAGCCAC-ATTATGAGAGCTAGTGTAAGAC
*
68135654 CATGTCTTGGACATGGCATC
1 CATGTCTGGGACATGGCATC
68135674 GTCAACTTAT
Statistics
Matches: 176, Mismatches: 22, Indels: 32
0.77 0.10 0.14
Matches are distributed among these distances:
45 5 0.03
46 7 0.04
47 53 0.30
48 25 0.14
49 39 0.22
50 4 0.02
51 18 0.10
52 25 0.14
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.24
Consensus pattern (48 bp):
CATGTCTGGGACATGGCATCAGCCACATTATGAGAGCTAGTGTAAGAC
Found at i:68135637 original size:100 final size:99
Alignment explanation
Indices: 68135400--68135673 Score: 346
Period size: 94 Copynumber: 2.8 Consensus size: 99
68135390 TTATTTGTGT
* * * * * * *
68135400 GCTAATGTAAAACATGTTTGGGACATGCATCGGCCAC-ATTATGAGAGCCAGTGTAAGACCATGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGATGATGATAGCCAGTGTAAGACCATGT
* * * * *
68135464 CTAGGACATGACATC-G---GTAT-TGAGACGAGT
66 CTGGGACATGGCATCAGCACATATAT-ATACGAGA
*
68135494 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGATGATGATAGCTAGTGTAAGA-CATGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGATGATGATAGCCAGTGTAAGACCATGT
68135558 CTGGGACATGGCATCAGCACATATATATACGAGA
66 CTGGGACATGGCATCAGCACATATATATACGAGA
68135592 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGATGATGATAGCCAGTGTAAGACCAT
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTCGATGATGATAGCCAGTGTAAGACCAT
*
68135657 GTCTTGGACATGGCATC
64 GTCTGGGACATGGCATC
68135674 GTCAACTTAT
Statistics
Matches: 156, Mismatches: 15, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
94 50 0.32
95 19 0.12
98 21 0.13
99 15 0.10
100 32 0.21
101 19 0.12
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.24
Consensus pattern (99 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGATGATGATAGCCAGTGTAAGACCATGT
CTGGGACATGGCATCAGCACATATATATACGAGA
Found at i:68137665 original size:15 final size:15
Alignment explanation
Indices: 68137629--68137675 Score: 60
Period size: 15 Copynumber: 3.1 Consensus size: 15
68137619 GAAAACCGAG
*
68137629 TAAAGAAATCCAAGA
1 TAAAGAAACCCAAGA
*
68137644 TAGAGAAACCC-AGAA
1 TAAAGAAACCCAAG-A
68137659 TAAAGAAACCCAAGA
1 TAAAGAAACCCAAGA
68137674 TA
1 TA
68137676 TGATACTATG
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
14 2 0.07
15 23 0.85
16 2 0.07
ACGTcount: A:0.57, C:0.17, G:0.15, T:0.11
Consensus pattern (15 bp):
TAAAGAAACCCAAGA
Found at i:68139817 original size:2 final size:2
Alignment explanation
Indices: 68139810--68139837 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
68139800 GCAACAAACT
68139810 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
68139838 AACTAAGCCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:68145368 original size:23 final size:23
Alignment explanation
Indices: 68145342--68145448 Score: 117
Period size: 23 Copynumber: 4.7 Consensus size: 23
68145332 CAAAGTACCA
* * *
68145342 CACTGTAATATAGCCGAAGCTAT
1 CACTGTAATGTAGCCAAAGCTAC
* *
68145365 CACTGCAACGTAGCCAAAGCTAC
1 CACTGTAATGTAGCCAAAGCTAC
* *
68145388 CACTGTATTGTAGCCGAAGCTAC
1 CACTGTAATGTAGCCAAAGCTAC
68145411 CACTG-AGATGTAGCCAAAGCTAC
1 CACTGTA-ATGTAGCCAAAGCTAC
* *
68145434 CACTATATTGTAGCC
1 CACTGTAATGTAGCC
68145449 TATAGATTCC
Statistics
Matches: 69, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
22 1 0.01
23 67 0.97
24 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.19, T:0.22
Consensus pattern (23 bp):
CACTGTAATGTAGCCAAAGCTAC
Found at i:68145402 original size:46 final size:46
Alignment explanation
Indices: 68145342--68145448 Score: 153
Period size: 46 Copynumber: 2.3 Consensus size: 46
68145332 CAAAGTACCA
* * *
68145342 CACTGTAATATAGCCGAAGCTATCACTGCA-ACGTAGCCAAAGCTAC
1 CACTGTATTGTAGCCGAAGCTACCACTG-AGACGTAGCCAAAGCTAC
*
68145388 CACTGTATTGTAGCCGAAGCTACCACTGAGATGTAGCCAAAGCTAC
1 CACTGTATTGTAGCCGAAGCTACCACTGAGACGTAGCCAAAGCTAC
*
68145434 CACTATATTGTAGCC
1 CACTGTATTGTAGCC
68145449 TATAGATTCC
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
45 1 0.02
46 54 0.98
ACGTcount: A:0.32, C:0.27, G:0.19, T:0.22
Consensus pattern (46 bp):
CACTGTATTGTAGCCGAAGCTACCACTGAGACGTAGCCAAAGCTAC
Found at i:68154867 original size:123 final size:120
Alignment explanation
Indices: 68154710--68154928 Score: 305
Period size: 123 Copynumber: 1.8 Consensus size: 120
68154700 GAATTTGTGG
* * * *
68154710 AATGAAATATGGATGTATTGATTATTGATTTATGTGTGTATGAG-TATTCGAATGATACCCGGGC
1 AATGAAATATGGATGTAATGATTATTGATGTATGTGTGCATGAGAAATT-GAATGATACCCGGGC
* * *
68154774 TAAGTCCCGAAGGCGATTATGCTAGTAATTATAATTGGTTTGAGCCTTAGTAACGAA
65 TAAG-CCCGAAGACAATTATGCTAGAAATTATAATTGGTTTGAGCCTTAGTAACGAA
* *
68154831 AATGAAATATGTATGTCCAATGATTATTGATGTATGTGTGCATGAGAAATTGAATGATATCCGGG
1 AATGAAATATGGATGT--AATGATTATTGATGTATGTGTGCATGAGAAATTGAATGATACCCGGG
*
68154896 CTAAGCCCGAAGACAATTATGCTGGAAATTATA
64 CTAAGCCCGAAGACAATTATGCTAGAAATTATA
68154929 TCCGGGTTAA
Statistics
Matches: 85, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
121 15 0.18
122 24 0.28
123 43 0.51
124 3 0.04
ACGTcount: A:0.33, C:0.11, G:0.23, T:0.33
Consensus pattern (120 bp):
AATGAAATATGGATGTAATGATTATTGATGTATGTGTGCATGAGAAATTGAATGATACCCGGGCT
AAGCCCGAAGACAATTATGCTAGAAATTATAATTGGTTTGAGCCTTAGTAACGAA
Found at i:68154953 original size:40 final size:40
Alignment explanation
Indices: 68154887--68155037 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
68154877 AAATTGAATG
* * *
68154887 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
68154926 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
68154966 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
68155006 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
68155038 ACGTGTTATA
Statistics
Matches: 91, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 16 0.18
40 73 0.80
41 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:68163427 original size:46 final size:45
Alignment explanation
Indices: 68163282--68163447 Score: 180
Period size: 46 Copynumber: 3.7 Consensus size: 45
68163272 AACCCGCCCC
* *
68163282 TAAGTGAACTC-GACTCAACTCAACGAGCTCGGGCGTT-GCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC-GGCATTCGCATCCA
* * *
68163326 TAAGTGAACTCGGACTCAACTCAACGAATTCGG-ATGC-CTAGTTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGCATTCGC-A--TCCA
* *
68163372 TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGG-CATTCGCATCCA
68163418 TAAGTGAACTCGGACTCAACTCAACGAGTT
1 TAAGTGAACTCGGACTCAACTCAACGAGTT
68163448 TGGATGCTCA
Statistics
Matches: 100, Mismatches: 12, Indels: 18
0.77 0.09 0.14
Matches are distributed among these distances:
43 2 0.02
44 14 0.14
45 19 0.19
46 58 0.58
47 2 0.02
48 4 0.04
49 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (45 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGCATTCGCATCCA
Found at i:68163453 original size:92 final size:90
Alignment explanation
Indices: 68163287--68163454 Score: 273
Period size: 92 Copynumber: 1.8 Consensus size: 90
68163277 GCCCCTAAGT
* *
68163287 GAACTCGACTCAACTCAACGAGCTCGGGCGTTGCATCCATAAGTGAACTCGGACTCAACTCAACG
1 GAACTCGACTCAACTCAACGAGCTCGGACATTGCATCCATAAGTGAACTCGGACTCAACTCAACG
68163352 AATTCGGATGCCTAGTTACATTCAC
66 AATTCGGATGCCTAGTTACATTCAC
*
68163377 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTC-GACTCAACTCAACGAGCTCGGACATT-GCATCCATAAGTGAACTCGGACTCAACTCAA
* *
68163442 CGAGTTTGGATGC
64 CGAATTCGGATGC
68163455 TCAACCATCC
Statistics
Matches: 71, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
90 6 0.08
91 23 0.32
92 42 0.59
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (90 bp):
GAACTCGACTCAACTCAACGAGCTCGGACATTGCATCCATAAGTGAACTCGGACTCAACTCAACG
AATTCGGATGCCTAGTTACATTCAC
Found at i:68171514 original size:27 final size:28
Alignment explanation
Indices: 68171477--68171616 Score: 182
Period size: 27 Copynumber: 5.2 Consensus size: 28
68171467 AGCATGGCTG
* *
68171477 CCAGA-ACAGATA-TTGTGACAGAGTCA
1 CCAGATACAGATATTTGTGGCAGAGCCA
68171503 CCAGATACAGATA-TTGTGGCAGAGCCA
1 CCAGATACAGATATTTGTGGCAGAGCCA
* *
68171530 CCAGAAACAGATATTTGTGGCAAAGCCA
1 CCAGATACAGATATTTGTGGCAGAGCCA
* *
68171558 CTAGAT-CAGATATTTGTGGCAAAGCCA
1 CCAGATACAGATATTTGTGGCAGAGCCA
*
68171585 CCAGAT-TAGATATTTGTGGCAGAGCCA
1 CCAGATACAGATATTTGTGGCAGAGCCA
68171612 CCAGA
1 CCAGA
68171617 ACGCTTCCTC
Statistics
Matches: 103, Mismatches: 9, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
26 5 0.05
27 81 0.79
28 17 0.17
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.21
Consensus pattern (28 bp):
CCAGATACAGATATTTGTGGCAGAGCCA
Found at i:68175971 original size:57 final size:58
Alignment explanation
Indices: 68175877--68176016 Score: 158
Period size: 57 Copynumber: 2.4 Consensus size: 58
68175867 TGTATACAAT
** ** * * *
68175877 AGGATTACCAGTCCAGGCTAAATCCTCTTTATGACATATGCTCTA-AGGAGCT-TGATC
1 AGGATTACCAGTCCAGGCTAAATCCAATCCATAACATATGCTCAAGAGGACCTAT-ATC
* * * *
68175934 TGGATTACCCGTTCAGGCTAAATCCAATCCATAACATATTCTCAAGAGGACCTATATC
1 AGGATTACCAGTCCAGGCTAAATCCAATCCATAACATATGCTCAAGAGGACCTATATC
68175992 AGGATTACCAGTCCAGGCTAAATCC
1 AGGATTACCAGTCCAGGCTAAATCC
68176017 TTTCTGTAAT
Statistics
Matches: 67, Mismatches: 14, Indels: 3
0.80 0.17 0.04
Matches are distributed among these distances:
57 35 0.52
58 31 0.46
59 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (58 bp):
AGGATTACCAGTCCAGGCTAAATCCAATCCATAACATATGCTCAAGAGGACCTATATC
Found at i:68186017 original size:55 final size:53
Alignment explanation
Indices: 68185888--68186076 Score: 227
Period size: 55 Copynumber: 3.5 Consensus size: 53
68185878 AACTTACCAT
* * *
68185888 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-GAAATCACCAA
1 TGCCATGTCTTGACATGGTCTTACATGGTA-CCTTGCCTTATAGAACTCATCAA
* * * *
68185941 TGCCATGACTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATTAA
1 TGCCATGTCTTGACATGGTCTTACATGGTACC-TTGCCTTATAG-AACTCATCAA
* * *
68185996 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAA
1 TGCCATGTCTTGACATGGTCTTACATG-GTACCTTGCCTTATAGAACTCATCAA
* *
68186050 TGCCATGCCTTGGCATGGTCTTACATG
1 TGCCATGTCTTGACATGGTCTTACATG
68186077 ATATCCATAT
Statistics
Matches: 116, Mismatches: 16, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
52 2 0.02
53 35 0.30
54 34 0.29
55 43 0.37
56 2 0.02
ACGTcount: A:0.22, C:0.23, G:0.19, T:0.35
Consensus pattern (53 bp):
TGCCATGTCTTGACATGGTCTTACATGGTACCTTGCCTTATAGAACTCATCAA
Found at i:68186118 original size:47 final size:47
Alignment explanation
Indices: 68186063--68186182 Score: 204
Period size: 47 Copynumber: 2.6 Consensus size: 47
68186053 CATGCCTTGG
* *
68186063 CATGGTCTTACATGATATCCATATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAAA
*
68186110 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAAA
*
68186157 GATGGTCTTACATGGTATCCTTATCT
1 CATGGTCTTACATGGTATCCTTATCT
68186183 CAGTACCAAT
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 68 1.00
ACGTcount: A:0.27, C:0.24, G:0.14, T:0.35
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAAA
Found at i:68186273 original size:47 final size:45
Alignment explanation
Indices: 68186207--68186308 Score: 125
Period size: 45 Copynumber: 2.2 Consensus size: 45
68186197 CATCTTGATG
* * *
68186207 TGGTCTTACATGGAGTCCTTAATCAATGCCGATGCCATGTCTTGACA
1 TGGTCTTACAGGGAGTCCTT--TCAATACCAATGCCATGTCTTGACA
**
68186254 TGGTCTTACACGGGA-TCCTTTCCTTACCAATGCCATGTCTTGACA
1 TGGTCTTACA-GGGAGTCCTTTCAATACCAATGCCATGTCTTGACA
68186299 TGGTCTTACA
1 TGGTCTTACA
68186309 TGGTATCATT
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
45 31 0.63
47 15 0.31
48 3 0.06
ACGTcount: A:0.22, C:0.25, G:0.20, T:0.33
Consensus pattern (45 bp):
TGGTCTTACAGGGAGTCCTTTCAATACCAATGCCATGTCTTGACA
Found at i:68191485 original size:53 final size:54
Alignment explanation
Indices: 68191417--68191624 Score: 224
Period size: 54 Copynumber: 3.9 Consensus size: 54
68191407 TTTCCTTTTT
* * * **
68191417 GAACTTACCATTGCCATGTCTTGACATGGTCTTATGTGGTATCCTTGCCTTAT-
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATA
* *
68191470 GAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGAG-A-CCATTTCCTTATA
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATG-GTATCC-TTGCCTTATA
** * * * *
68191524 GTAACTCATTAATTCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATA
1 G-AACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATA
* * *
68191579 GAACTTATCAATGCCATGCCTTGACATGGTCTTACATGATATCCTT
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
68191625 ATCTTACCAA
Statistics
Matches: 129, Mismatches: 20, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
52 2 0.02
53 41 0.32
54 42 0.33
55 42 0.33
56 2 0.02
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.37
Consensus pattern (54 bp):
GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATA
Found at i:68191553 original size:55 final size:53
Alignment explanation
Indices: 68191428--68191617 Score: 213
Period size: 55 Copynumber: 3.5 Consensus size: 53
68191418 AACTTACCAT
* ** *
68191428 TGCCATGTCTTGACATGGTCTTATGTG-GTATCCTTGCCTTAT-GAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGAG-A-CCTTGCCTTATAGAACTCATCAA
* * *
68191481 TGCCATGCCTTGGCATGGTCTTACATGAGACCATTTCCTTATAGTAACTCATTAA
1 TGCCATGCCTTGACATGGTCTTACATGAGACC-TTGCCTTATAG-AACTCATCAA
* * ** *
68191536 TTCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATGA-GACCTTGCCTTATAGAACTCATCAA
68191590 TGCCATGCCTTGACATGGTCTTACATGA
1 TGCCATGCCTTGACATGGTCTTACATGA
68191618 TATCCTTATC
Statistics
Matches: 115, Mismatches: 17, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
52 2 0.02
53 32 0.28
54 36 0.31
55 43 0.37
56 2 0.02
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.36
Consensus pattern (53 bp):
TGCCATGCCTTGACATGGTCTTACATGAGACCTTGCCTTATAGAACTCATCAA
Found at i:68191657 original size:47 final size:47
Alignment explanation
Indices: 68191602--68191724 Score: 192
Period size: 47 Copynumber: 2.6 Consensus size: 47
68191592 CCATGCCTTG
* *
68191602 ACATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAA
1 ACATGGTCTTACATGGTATCCTTATCTTACCAAATGACATGTTCCAA
* *
68191649 ACATGGTCTTACATGGTATCATTATCTTACCAAATGATATGTTCCAA
1 ACATGGTCTTACATGGTATCCTTATCTTACCAAATGACATGTTCCAA
* *
68191696 ACATAGTCTTACATGGTATCCTTGTCTTA
1 ACATGGTCTTACATGGTATCCTTATCTTA
68191725 GTGCCAATGC
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 69 1.00
ACGTcount: A:0.29, C:0.22, G:0.12, T:0.37
Consensus pattern (47 bp):
ACATGGTCTTACATGGTATCCTTATCTTACCAAATGACATGTTCCAA
Found at i:68197046 original size:32 final size:32
Alignment explanation
Indices: 68197006--68197068 Score: 90
Period size: 32 Copynumber: 2.0 Consensus size: 32
68196996 CCCATGGTTG
* *
68197006 TGTGCCGATCATATTACAATTACTGATGGCTT
1 TGTGCCGATCAAATTACAACTACTGATGGCTT
**
68197038 TGTGCCGATCAAATTACCGCTACTGATGGCT
1 TGTGCCGATCAAATTACAACTACTGATGGCT
68197069 GTAAGCCGTG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.33
Consensus pattern (32 bp):
TGTGCCGATCAAATTACAACTACTGATGGCTT
Found at i:68197211 original size:21 final size:21
Alignment explanation
Indices: 68197170--68197211 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
68197160 TATCCCCGCA
*
68197170 TGGTGTGTTGGTTGGTATGGG
1 TGGTGTGTTGGTTGATATGGG
68197191 TGGTGTGTTGGTTAGAT-TGGG
1 TGGTGTGTTGGTT-GATATGGG
68197212 ATGGATTGCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 17 0.89
22 2 0.11
ACGTcount: A:0.07, C:0.00, G:0.50, T:0.43
Consensus pattern (21 bp):
TGGTGTGTTGGTTGATATGGG
Found at i:68197349 original size:28 final size:28
Alignment explanation
Indices: 68197303--68197358 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
68197293 TTGATTCTGA
* **
68197303 TACTGTATTGGGCTTAGGCTGACACTGT
1 TACTATATTGGGCTTAGGCCCACACTGT
68197331 TACTATATTGGG-TTAAGGCCCACACTGT
1 TACTATATTGGGCTT-AGGCCCACACTGT
68197359 GCTGTTACTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 2 0.08
28 22 0.92
ACGTcount: A:0.21, C:0.20, G:0.25, T:0.34
Consensus pattern (28 bp):
TACTATATTGGGCTTAGGCCCACACTGT
Found at i:68202509 original size:30 final size:30
Alignment explanation
Indices: 68202465--68202553 Score: 94
Period size: 30 Copynumber: 3.0 Consensus size: 30
68202455 CAAAGATAAC
*
68202465 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAACCCGGAATAAAGAAATCCAAGATA
*
68202494 GAGAAACCCGGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGGAATAAAGAAATCCAAG-ATA
* * *
68202524 AAGAGATCCAGG-ATAAAGAAACCCAAGATA
1 AAGA-AACCCGGAATAAAGAAATCCAAGATA
68202554 CGATACTATG
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
29 9 0.18
30 34 0.68
31 7 0.14
ACGTcount: A:0.56, C:0.16, G:0.18, T:0.10
Consensus pattern (30 bp):
AAGAAACCCGGAATAAAGAAATCCAAGATA
Found at i:68202513 original size:15 final size:14
Alignment explanation
Indices: 68202465--68202547 Score: 58
Period size: 15 Copynumber: 5.6 Consensus size: 14
68202455 CAAAGATAAC
*
68202465 AAGAAAACCGAATA
1 AAGAAACCCGAATA
* *
68202479 AAGAAATCCAAGATA
1 AAGAAACCCGA-ATA
*
68202494 GAGAAACCCGGAATA
1 AAGAAACCC-GAATA
*
68202509 AAGAAATCCAGAATA
1 AAGAAA-CCCGAATA
* * *
68202524 AAGAGATCCAGGATA
1 AAGA-AACCCGAATA
68202539 AAGAAACCC
1 AAGAAACCC
68202548 AAGATACGAT
Statistics
Matches: 54, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
14 12 0.22
15 38 0.70
16 4 0.07
ACGTcount: A:0.55, C:0.17, G:0.18, T:0.10
Consensus pattern (14 bp):
AAGAAACCCGAATA
Found at i:68202553 original size:15 final size:15
Alignment explanation
Indices: 68202476--68202553 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
68202466 AGAAAACCGA
68202476 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* **
68202491 ATAGAGAAA-CCCGG
1 ATAAAGAAATCCAAG
68202505 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
68202520 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
68202536 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
68202551 ATA
1 ATA
68202554 CGATACTATG
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
14 3 0.06
15 44 0.88
16 3 0.06
ACGTcount: A:0.55, C:0.15, G:0.18, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:68205504 original size:44 final size:43
Alignment explanation
Indices: 68205441--68205607 Score: 176
Period size: 44 Copynumber: 3.7 Consensus size: 43
68205431 TGTAACCCGC
68205441 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGCGTT-GCAT
* *
68205485 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCG-GATGCCTAGTT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGCGTTG-C-A--T
* * * *
68205531 ACATCTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTGCAT
1 CCA--TAAGCGAACTCGGACTCAACTCAACGAGCTC-G-CGTTGCAT
*
68205577 CCATAAGTGAACTCGGACTCAACTCAACGAG
1 CCATAAGCGAACTCGGACTCAACTCAACGAG
68205608 TTCGGATGCT
Statistics
Matches: 102, Mismatches: 11, Indels: 19
0.77 0.08 0.14
Matches are distributed among these distances:
42 1 0.01
43 3 0.03
44 37 0.36
45 23 0.23
46 6 0.06
47 25 0.25
48 4 0.04
49 1 0.01
50 2 0.02
ACGTcount: A:0.30, C:0.31, G:0.20, T:0.20
Consensus pattern (43 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGCGTTGCAT
Found at i:68205557 original size:91 final size:92
Alignment explanation
Indices: 68205448--68205616 Score: 288
Period size: 92 Copynumber: 1.8 Consensus size: 92
68205438 CGCCCATAAG
*
68205448 CGAACTCGGACTCAACTCAACGAGCTC-G-CGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATT-GCATCCATAAGTGAACTCGGACTCAACTCA
68205511 ACGAGCTCGGATGCCTAGTTACATCTCA
65 ACGAGCTCGGATGCCTAGTTACATCTCA
*
68205539 CGAACTCGGACTCAACTCAACGAGTTCGGACATTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTGCATCCATAAGTGAACTCGGACTCAACTCAA
*
68205604 CGAGTTCGGATGC
66 CGAGCTCGGATGC
68205617 TCAACCATCC
Statistics
Matches: 73, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
91 26 0.36
92 44 0.60
93 3 0.04
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (92 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCA
Found at i:68212879 original size:49 final size:49
Alignment explanation
Indices: 68212824--68213191 Score: 585
Period size: 47 Copynumber: 7.7 Consensus size: 49
68212814 AGATTTTAAC
68212824 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAT
1 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAT
68212873 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAT
1 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAT
68212922 GTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGAT
1 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAT
68212969 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAT
1 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAT
68213018 GTGATGAATGTGAAAGTGTATATA-A-GTGATAAGGCCTAATGGCCGAT
1 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAT
* * *
68213065 GTGATGAATGTG-AAG-GTGTATATATGTGATAAGGCCGAATGGCCAAT
1 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAT
* * * * *
68213112 GTGATGAATGTGAAAGTG--TATATATGTGATAGGGCCGAGTGGCCAAC
1 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAT
*
68213159 GTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 GTGATGAATGTGAAAGTGTATATATATGTGATAAG
68213192 TCTCGAAGGG
Statistics
Matches: 303, Mismatches: 8, Indels: 18
0.92 0.02 0.05
Matches are distributed among these distances:
45 6 0.02
46 4 0.01
47 165 0.54
48 5 0.02
49 123 0.41
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (49 bp):
GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAT
Found at i:68212964 original size:96 final size:96
Alignment explanation
Indices: 68212824--68213191 Score: 600
Period size: 96 Copynumber: 3.9 Consensus size: 96
68212814 AGATTTTAAC
68212824 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 GTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
68212889 TGTATATATATGTGATAAGGCCTAATGGCCGAT
64 TGTATATATATGTGATAAGGCCTAATGGCCGAT
68212922 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
68212987 TATATATATGTGATAAGGCCTAATGGCCGAT
66 TATATATATGTGATAAGGCCTAATGGCCGAT
*
68213018 GTGATGAATGTGAAAGTGTATATAAGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAG-G
1 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * *
68213081 TGTATATATGTGATAAGGCCGAATGGCCAAT
66 TATATATATGTGATAAGGCCTAATGGCCGAT
* * * * * *
68213112 GTGATGAATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTG
1 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
68213177 TATA-A-ATGTGATAAG
66 TATATATATGTGATAAG
68213192 TCTCGAAGGG
Statistics
Matches: 256, Mismatches: 12, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
94 91 0.36
95 7 0.03
96 140 0.55
98 18 0.07
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (96 bp):
GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
TATATATATGTGATAAGGCCTAATGGCCGAT
Found at i:68221533 original size:27 final size:27
Alignment explanation
Indices: 68221491--68221662 Score: 152
Period size: 27 Copynumber: 6.4 Consensus size: 27
68221481 CTGTTGGGCT
**
68221491 GAAATACCCCCGGTTTGTAAAATTACC
1 GAAATACCCCTAGTTTGTAAAATTACC
* **
68221518 AAAATACTTCTAGTTTGTAAAA-TACC
1 GAAATACCCCTAGTTTGTAAAATTACC
* * * *
68221544 AAAATA-CCCTCGGATTGTAAATTTACC
1 GAAATACCCCT-AGTTTGTAAAATTACC
* *
68221571 GAAATACCCCTAGCTTGTAAAATTACT
1 GAAATACCCCTAGTTTGTAAAATTACC
* *
68221598 GAAATACCCCTAATTTGTAAAATTATC
1 GAAATACCCCTAGTTTGTAAAATTACC
* ** *
68221625 GAAATA-CCCTTGTAGAGTAAAATTATC
1 GAAATACCCCTAGT-TTGTAAAATTACC
68221652 GAAATACCCCT
1 GAAATACCCCT
68221663 GTAGGGTAAA
Statistics
Matches: 117, Mismatches: 23, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
25 2 0.02
26 23 0.20
27 84 0.72
28 8 0.07
ACGTcount: A:0.38, C:0.21, G:0.11, T:0.30
Consensus pattern (27 bp):
GAAATACCCCTAGTTTGTAAAATTACC
Found at i:68221576 original size:53 final size:53
Alignment explanation
Indices: 68221492--68221633 Score: 142
Period size: 53 Copynumber: 2.7 Consensus size: 53
68221482 TGTTGGGCTG
* ** *
68221492 AAATACCCCCGGTTTGTAAAATTACCAAAATACTTCTAGTTTGTAAAATACCA
1 AAATACCCCCGGATTGTAAAATTACCAAAATACCCCTAGCTTGTAAAATACCA
* * * **
68221545 AAATACCCTCGGATTGTAAATTTACCGAAATACCCCTAGCTTGTAAAATTACTG
1 AAATACCCCCGGATTGTAAAATTACCAAAATACCCCTAGCTTGTAAAA-TACCA
** * *
68221599 AAATA-CCCCTAATTTGTAAAATTATCGAAATACCC
1 AAATACCCCCGGA-TTGTAAAATTACCAAAATACCC
68221634 TTGTAGAGTA
Statistics
Matches: 73, Mismatches: 14, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
53 45 0.62
54 28 0.38
ACGTcount: A:0.39, C:0.22, G:0.10, T:0.30
Consensus pattern (53 bp):
AAATACCCCCGGATTGTAAAATTACCAAAATACCCCTAGCTTGTAAAATACCA
Found at i:68221665 original size:27 final size:27
Alignment explanation
Indices: 68221614--68221674 Score: 104
Period size: 27 Copynumber: 2.3 Consensus size: 27
68221604 CCCCTAATTT
*
68221614 GTAAAATTATCGAAATACCCTTGTAGA
1 GTAAAATTATCGAAATACCCCTGTAGA
*
68221641 GTAAAATTATCGAAATACCCCTGTAGG
1 GTAAAATTATCGAAATACCCCTGTAGA
68221668 GTAAAAT
1 GTAAAAT
68221675 GACTGTTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.41, C:0.15, G:0.16, T:0.28
Consensus pattern (27 bp):
GTAAAATTATCGAAATACCCCTGTAGA
Found at i:68222199 original size:32 final size:32
Alignment explanation
Indices: 68222144--68222215 Score: 90
Period size: 32 Copynumber: 2.2 Consensus size: 32
68222134 ATATTTGCCC
* * *
68222144 ATGGCTGTGTGGCGTTCATATTACAACTACTG
1 ATGGCTGTGTGCCGATCAAATTACAACTACTG
* **
68222176 ATGGCTTTGTGCCGATCAAATTACCGCTACTG
1 ATGGCTGTGTGCCGATCAAATTACAACTACTG
68222208 ATGGCTGT
1 ATGGCTGT
68222216 AAGCCGTGTA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.21, C:0.21, G:0.25, T:0.33
Consensus pattern (32 bp):
ATGGCTGTGTGCCGATCAAATTACAACTACTG
Found at i:68222356 original size:21 final size:21
Alignment explanation
Indices: 68222315--68222356 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
68222305 TATCCCCGCA
*
68222315 TGGTGTGTTGGTTGATATGGG
1 TGGTGTGTTGGTGGATATGGG
68222336 TGGTGTGTTGGCTGGAT-TGGG
1 TGGTGTGTTGG-TGGATATGGG
68222357 ATGGATTGCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.07, C:0.02, G:0.50, T:0.40
Consensus pattern (21 bp):
TGGTGTGTTGGTGGATATGGG
Found at i:68222494 original size:28 final size:28
Alignment explanation
Indices: 68222448--68222503 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
68222438 CTGATTTTGA
* *
68222448 TACTGTATTGGGCTTAGGCCGACACTGT
1 TACTATATTGGGCTTAGGCCCACACTGT
68222476 TACTATATTGGG-TTAAGGCCCACACTGT
1 TACTATATTGGGCTT-AGGCCCACACTGT
68222504 GCTGTTACTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.08
28 23 0.92
ACGTcount: A:0.21, C:0.21, G:0.25, T:0.32
Consensus pattern (28 bp):
TACTATATTGGGCTTAGGCCCACACTGT
Found at i:68225689 original size:14 final size:14
Alignment explanation
Indices: 68225670--68225698 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
68225660 GTTGTTTATT
68225670 TGTTTAGGACTTAC
1 TGTTTAGGACTTAC
68225684 TGTTTAGGACTTAC
1 TGTTTAGGACTTAC
68225698 T
1 T
68225699 AAGCTATGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.14, G:0.21, T:0.45
Consensus pattern (14 bp):
TGTTTAGGACTTAC
Found at i:68226398 original size:83 final size:83
Alignment explanation
Indices: 68226299--68226463 Score: 303
Period size: 83 Copynumber: 2.0 Consensus size: 83
68226289 TAGCATCTAC
68226299 AGCCATATTATATTGTACCAATGATGCACATGTGATTGCTTTTTAAATCATGTAATATGTCTACT
1 AGCCATATTATATTGTACCAATGATGCACATGTGATTGCTTTTTAAATCATGTAATATGTCTACT
68226364 ATTTGTTTTATTATGTGT
66 ATTTGTTTTATTATGTGT
* *
68226382 AGCCATATTATTTTGTACCAATGATGCACATGTGATTGTTTTTTAAATCATGTAATATGTCTACT
1 AGCCATATTATATTGTACCAATGATGCACATGTGATTGCTTTTTAAATCATGTAATATGTCTACT
*
68226447 ATTTGTTTTGTTATGTG
66 ATTTGTTTTATTATGTG
68226464 CATGTACAGA
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
83 79 1.00
ACGTcount: A:0.27, C:0.12, G:0.15, T:0.47
Consensus pattern (83 bp):
AGCCATATTATATTGTACCAATGATGCACATGTGATTGCTTTTTAAATCATGTAATATGTCTACT
ATTTGTTTTATTATGTGT
Found at i:68249049 original size:50 final size:50
Alignment explanation
Indices: 68248974--68249267 Score: 281
Period size: 50 Copynumber: 5.8 Consensus size: 50
68248964 ACCGAAGCTC
* * * *
68248974 TCTGGTACGCATAGTAGCTTGCACTTAGTACTACACATGCGACCTAACAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* *
68249024 TCTGGTACACGTAGTATCCTGCACTTAGTACTACACACT-TGACCTAACCA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACA-TGTGACCTAACAA
** * * * * *
68249074 TCTAATACACGTAGTAGCCTGTACTTAGTACTACACACGTGATCAAAGCTA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAA-CAA
* * * *
68249125 TCAGGTACGCAG-AGTAGCCTGCACTTACTACTACACATGCGACCTAACAA
1 TCTGGTACAC-GTAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* * * *
68249175 TCTGGTACATGTAGTAGCCTACACTTAGCACTACACACGTGACCTAA-AA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* * *
68249224 -CTGTCTTAAACACATAGTAGCCTGCACATAGTACTACACATGTG
1 TCTG--GT--ACACGTAGTAGCCTGCACTTAGTACTACACATGTG
68249268 TTCTCATAAT
Statistics
Matches: 195, Mismatches: 40, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
48 3 0.02
49 3 0.02
50 121 0.62
51 38 0.19
52 30 0.15
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.26
Consensus pattern (50 bp):
TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
Found at i:68249218 original size:151 final size:152
Alignment explanation
Indices: 68248968--68249263 Score: 425
Period size: 151 Copynumber: 1.9 Consensus size: 152
68248958 CTTGTAACCG
* * * * *
68248968 AAGCTCTCTGGTACGCATAGTAGCTTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACA
1 AAGCTATCAGGTACGCAGAGTAGCCTGCACTTACTACTACACATGCGACCTAACAATCTGGTACA
* * * * * *
68249033 CGTAGTATCCTGCACTTAGTACTACACACTTGACCT-AACCATC-TAATACACGTAGTAGCCTGT
66 CGTAGTAGCCTACACTTAGCACTACACACGTGACCTAAACCATCTTAA-ACACATAGTAGCCTGC
*
68249096 ACTTAGTACTACACACGTGATCA
130 ACATAGTACTACACACGTGATCA
68249119 AAGCTATCAGGTACGCAGAGTAGCCTGCACTTACTACTACACATGCGACCTAACAATCTGGTACA
1 AAGCTATCAGGTACGCAGAGTAGCCTGCACTTACTACTACACATGCGACCTAACAATCTGGTACA
* **
68249184 TGTAGTAGCCTACACTTAGCACTACACACGTGACCTAAAACTGTCTTAAACACATAGTAGCCTGC
66 CGTAGTAGCCTACACTTAGCACTACACACGTGACCT-AAACCATCTTAAACACATAGTAGCCTGC
68249249 ACATAGTACTACACA
130 ACATAGTACTACACA
68249264 TGTGTTCTCA
Statistics
Matches: 127, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
151 91 0.72
153 33 0.26
154 3 0.02
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (152 bp):
AAGCTATCAGGTACGCAGAGTAGCCTGCACTTACTACTACACATGCGACCTAACAATCTGGTACA
CGTAGTAGCCTACACTTAGCACTACACACGTGACCTAAACCATCTTAAACACATAGTAGCCTGCA
CATAGTACTACACACGTGATCA
Found at i:68251494 original size:40 final size:40
Alignment explanation
Indices: 68251365--68251517 Score: 157
Period size: 40 Copynumber: 3.8 Consensus size: 40
68251355 GGGCTTTTCG
* * *
68251365 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 AGCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-C
* ** *
68251406 -GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACT
1 AGCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCACC
* **
68251445 AGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCC
1 AGCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACC
* * *
68251485 AGCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 AGCACAATTGCCTTCGGGTCTTAGCCCGGATAT
68251518 CATTCAATTT
Statistics
Matches: 92, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 2 0.02
40 88 0.96
41 2 0.02
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
AGCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACC
Found at i:68251500 original size:80 final size:80
Alignment explanation
Indices: 68251365--68251515 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
68251355 GGGCTTTTCG
* *
68251365 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 AGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGC
68251430 CCGGATGTAGCCACT
66 CCGGATGTAGCCACT
* * ** * *
68251445 AGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTA
1 AGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTA
68251508 GCCCGGAT
64 GCCCGGAT
68251516 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
79 3 0.05
80 58 0.95
ACGTcount: A:0.23, C:0.27, G:0.25, T:0.26
Consensus pattern (80 bp):
AGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGC
CCGGATGTAGCCACT
Found at i:68258558 original size:40 final size:39
Alignment explanation
Indices: 68258513--68258642 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
68258503 CGGAATATAA
68258513 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
68258553 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
68258593 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
68258633 CCGGATATAA
1 CCGGATATAA
68258643 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:68258657 original size:40 final size:40
Alignment explanation
Indices: 68258529--68258679 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
68258519 ATAACCATGT
* * *
68258529 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
68258569 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
68258609 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
68258649 GCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
68258680 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 15 0.16
40 74 0.81
41 2 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:68258663 original size:80 final size:79
Alignment explanation
Indices: 68258529--68258677 Score: 203
Period size: 80 Copynumber: 1.9 Consensus size: 79
68258519 ATAACCATGT
*
68258529 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-CTTAGCC
68258594 CGGATGTAGCCACTA
65 CGGATGTAGCCACTA
* * * * *
68258609 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGCTTAGC
68258672 CCGGAT
64 CCGGAT
68258678 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
79 15 0.25
80 46 0.75
ACGTcount: A:0.21, C:0.28, G:0.24, T:0.27
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGCTTAGCCC
GGATGTAGCCACTA
Found at i:68263233 original size:40 final size:39
Alignment explanation
Indices: 68263070--68263251 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
68263060 AAATTGAATG
* *
68263070 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * *
68263109 ATAACCGGGTTAAGACCCGAAGGCA-TTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
68263148 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
68263188 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
68263227 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
68263252 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 23, Indels: 13
0.76 0.15 0.09
Matches are distributed among these distances:
36 4 0.04
37 2 0.02
38 1 0.01
39 37 0.33
40 69 0.61
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:68263276 original size:80 final size:80
Alignment explanation
Indices: 68263109--68263296 Score: 184
Period size: 80 Copynumber: 2.4 Consensus size: 80
68263099 GCTGGAAATT
* * * *
68263109 ATAACCGGGTTAAGACCCGAAGGCATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCAT
1 ATAACCGGGCTAAGACCCGAAGGCATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCAT
*
68263174 TCGTGCGAGTCATTC
66 TCGTGCGAGTCATCC
* * * * *
68263189 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCA-TTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
68263252 CTTGGTGCGGGTTA-CC
64 ATTCGTGCGAGTCATCC
* *
68263268 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGC-ATTG
68263297 ATCGAGTAGC
Statistics
Matches: 87, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
79 24 0.28
80 62 0.71
81 1 0.01
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (80 bp):
ATAACCGGGCTAAGACCCGAAGGCATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCAT
TCGTGCGAGTCATCC
Found at i:68268083 original size:47 final size:47
Alignment explanation
Indices: 68268023--68268372 Score: 484
Period size: 47 Copynumber: 7.3 Consensus size: 47
68268013 GTATGAGATA
* *
68268023 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * * *
68268070 CATATATGAGATAAGGCCTAATGGCCGATGTGATAAATGCGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA--GTG
68268119 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA--GTG
68268168 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
68268215 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTG
1 --TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
68268264 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * * * * * * *
68268311 TATAAATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGGAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
68268358 TATAAATGTGATAAG
1 TATATATGTGATAAG
68268373 TCCCGAAGGG
Statistics
Matches: 278, Mismatches: 21, Indels: 8
0.91 0.07 0.03
Matches are distributed among these distances:
47 140 0.50
49 138 0.50
ACGTcount: A:0.33, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:68268133 original size:96 final size:96
Alignment explanation
Indices: 68268023--68268372 Score: 497
Period size: 98 Copynumber: 3.6 Consensus size: 96
68268013 GTATGAGATA
* *
68268023 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGCATATATGAGATAAGGCC
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* *
68268088 TAATGGCCGATGTGATAAATGCGAAAGTGTG
66 TAATGGCCGATGTGATGAATGTGAAAGTGTG
* *
68268119 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA--GTGTATATATGTGATAAGG
*
68268184 CCTAATGGCCGATGTGATGAATGTGAAAGTGTA
64 CCTAATGGCCGATGTGATGAATGTGAAAGTGTG
* * *
68268217 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* *
68268282 GAATGGCCAATGTGATGAATGTGAAA--GTG
66 TAATGGCCGATGTGATGAATGTGAAAGTGTG
* * * * * * *
68268311 TATAAATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGGAAGTGTATAAATGTGATAAG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAG
68268373 TCCCGAAGGG
Statistics
Matches: 231, Mismatches: 21, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
94 54 0.23
96 87 0.38
98 90 0.39
ACGTcount: A:0.33, C:0.09, G:0.31, T:0.28
Consensus pattern (96 bp):
TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
TAATGGCCGATGTGATGAATGTGAAAGTGTG
Found at i:68270533 original size:40 final size:40
Alignment explanation
Indices: 68270489--68270720 Score: 383
Period size: 40 Copynumber: 5.8 Consensus size: 40
68270479 GAGAATTGAG
68270489 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
68270529 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCATGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
68270569 AGTGATGTATCCGGACTAAGTTCTGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
68270609 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * * *
68270649 AGTAATGCAACCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * *
68270689 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCA
68270721 ATCATGCTGG
Statistics
Matches: 179, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 179 1.00
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
Found at i:68274586 original size:47 final size:47
Alignment explanation
Indices: 68274526--68274873 Score: 484
Period size: 49 Copynumber: 7.3 Consensus size: 47
68274516 GTATGAGATA
* *
68274526 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * *
68274573 CATATATGAGATAAGGCCTAATGGCCGATGTGAT-AATGCGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
68274619 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 --TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA--GTG
68274670 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
68274717 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTG
1 --TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
68274766 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * * * * * *
68274813 TATA-ATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGGAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
68274859 TATAAATGTGATAAG
1 TATATATGTGATAAG
68274874 TCCCGAAGGG
Statistics
Matches: 275, Mismatches: 18, Indels: 16
0.89 0.06 0.05
Matches are distributed among these distances:
46 52 0.19
47 90 0.33
48 32 0.12
49 98 0.36
51 3 0.01
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Done.