Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 217 of 318
Found at i:68282483 original size:49 final size:49
Alignment explanation
Indices: 68282387--68282554 Score: 270
Period size: 49 Copynumber: 3.5 Consensus size: 49
68282377 TTAGGATTTT
68282387 ATGTGATGAATGTGAAAGTGTATG--TATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCA
68282434 ATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCA
* * *
68282483 ATGTGATGAATGTGAAAGTATATATATATATGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCA
*
68282532 ATGTGATGGAA-GTGGAAGTGTAT
1 ATGTGAT-GAATGTGAAAGTGTAT
68282555 AACTGTGATA
Statistics
Matches: 113, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
47 24 0.21
49 86 0.76
50 3 0.03
ACGTcount: A:0.34, C:0.07, G:0.30, T:0.29
Consensus pattern (49 bp):
ATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCA
Found at i:68286815 original size:27 final size:27
Alignment explanation
Indices: 68286781--68286835 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
68286771 TGGATAAGTT
*
68286781 GTAGAATTACCGAAATACCCCTGTAAG
1 GTAGAATTACCAAAATACCCCTGTAAG
68286808 GTAGAATTACCAAAATACCCCTGTAAG
1 GTAGAATTACCAAAATACCCCTGTAAG
68286835 G
1 G
68286836 CCCCTGTTAG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.38, C:0.22, G:0.18, T:0.22
Consensus pattern (27 bp):
GTAGAATTACCAAAATACCCCTGTAAG
Found at i:68286849 original size:38 final size:38
Alignment explanation
Indices: 68286798--68286870 Score: 128
Period size: 38 Copynumber: 1.9 Consensus size: 38
68286788 TACCGAAATA
68286798 CCCCTGTAAGGTAGAATTACCAAAATACCCCTGTAAGG
1 CCCCTGTAAGGTAGAATTACCAAAATACCCCTGTAAGG
* *
68286836 CCCCTGTTAGGTAGAATTACTAAAATACCCCTGTA
1 CCCCTGTAAGGTAGAATTACCAAAATACCCCTGTA
68286871 GGATAGAATT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.25
Consensus pattern (38 bp):
CCCCTGTAAGGTAGAATTACCAAAATACCCCTGTAAGG
Found at i:68286877 original size:27 final size:27
Alignment explanation
Indices: 68286836--68286963 Score: 116
Period size: 27 Copynumber: 4.7 Consensus size: 27
68286826 CCCTGTAAGG
*
68286836 CCCCTGTTA-GGTAGAATTACTAAAATA
1 CCCCTG-TAGGGTAGAATTACTGAAATA
* *
68286863 CCCCTGTAGGATAGAATTACCGAAATA
1 CCCCTGTAGGGTAGAATTACTGAAATA
* *
68286890 CCCTTGTAGGGTAGAAATA-TCGAAATA
1 CCCCTGTAGGGTAGAATTACT-GAAATA
* * * *
68286917 CCCTTGTAGGGCAGAATTACCGAGATA
1 CCCCTGTAGGGTAGAATTACTGAAATA
* * *
68286944 CCCTTGTGGGGTAAAATTAC
1 CCCCTGTAGGGTAGAATTAC
68286964 CATTTTCCCC
Statistics
Matches: 84, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
26 2 0.02
27 82 0.98
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.26
Consensus pattern (27 bp):
CCCCTGTAGGGTAGAATTACTGAAATA
Found at i:68286933 original size:54 final size:53
Alignment explanation
Indices: 68286858--68286960 Score: 152
Period size: 54 Copynumber: 1.9 Consensus size: 53
68286848 AGAATTACTA
*
68286858 AAATACCCCTGTAGGATAGAATTACCGAAATACCCTTGTAGGGTAGAAATATCG
1 AAATACCCCTGTAGGACAGAATTACCGAAATACCCTTGTAGGGTA-AAATATCG
* * * *
68286912 AAATACCCTTGTAGGGCAGAATTACCGAGATACCCTTGTGGGGTAAAAT
1 AAATACCCCTGTAGGACAGAATTACCGAAATACCCTTGTAGGGTAAAAT
68286961 TACCATTTTC
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
53 4 0.09
54 40 0.91
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.24
Consensus pattern (53 bp):
AAATACCCCTGTAGGACAGAATTACCGAAATACCCTTGTAGGGTAAAATATCG
Found at i:68286964 original size:27 final size:27
Alignment explanation
Indices: 68286858--68286964 Score: 126
Period size: 27 Copynumber: 4.0 Consensus size: 27
68286848 AGAATTACTA
* * *
68286858 AAATACCCCTGTAGGATAGAATTACCG
1 AAATACCCTTGTAGGGTAAAATTACCG
*
68286885 AAATACCCTTGTAGGGTAGAAA-TATCG
1 AAATACCCTTGTAGGGTA-AAATTACCG
* *
68286912 AAATACCCTTGTAGGGCAGAATTACCG
1 AAATACCCTTGTAGGGTAAAATTACCG
* *
68286939 AGATACCCTTGTGGGGTAAAATTACC
1 AAATACCCTTGTAGGGTAAAATTACC
68286965 ATTTTCCCCT
Statistics
Matches: 67, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
26 2 0.03
27 63 0.94
28 2 0.03
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.24
Consensus pattern (27 bp):
AAATACCCTTGTAGGGTAAAATTACCG
Found at i:68288363 original size:15 final size:16
Alignment explanation
Indices: 68288328--68288365 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
68288318 TAATTTAACT
*
68288328 TAAATTAACCAATTTAC
1 TAAATTAACC-ATTTAA
68288345 TAAATTAACC-TTTAA
1 TAAATTAACCATTTAA
68288360 TAAATT
1 TAAATT
68288366 TAATATTCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 10 0.50
17 10 0.50
ACGTcount: A:0.47, C:0.13, G:0.00, T:0.39
Consensus pattern (16 bp):
TAAATTAACCATTTAA
Found at i:68292989 original size:37 final size:37
Alignment explanation
Indices: 68292931--68293112 Score: 301
Period size: 37 Copynumber: 4.9 Consensus size: 37
68292921 GCTCAGACGA
* * *
68292931 AATCTCCACACGAAGTTATCGGGTCTTACCCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
68292968 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
68293005 ACTCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
* *
68293042 ACTCTCCACACGTAGTCATCGGGTCTTGCCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
68293079 AATCTCCACACGTAGTCATCGGGTCTCACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
68293113 ATATATTTCC
Statistics
Matches: 137, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 137 1.00
ACGTcount: A:0.24, C:0.34, G:0.20, T:0.23
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:68293396 original size:47 final size:47
Alignment explanation
Indices: 68293317--68293604 Score: 432
Period size: 47 Copynumber: 6.1 Consensus size: 47
68293307 TATATATATT
* * * *
68293317 TCACATTGACCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
68293364 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
68293411 TCATATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
68293458 TCACATAGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
68293505 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* **
68293552 TCACATTGGCCATTCGGCCTTATCACATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
68293599 TCACAT
1 TCACAT
68293605 AAAATCCTAA
Statistics
Matches: 216, Mismatches: 25, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 216 1.00
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.32
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:68293485 original size:141 final size:141
Alignment explanation
Indices: 68293317--68293605 Score: 506
Period size: 141 Copynumber: 2.0 Consensus size: 141
68293307 TATATATATT
* *
68293317 TCACATTGACCATTCGGCTTTACCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGC
1 TCACATAGACCATTCGGCCTTACCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGC
* * *
68293382 CTTATCACACATATGCATGCTCACATTCATCATATTGGCCATTCGGCCTTATCACATATATGCAT
66 CTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
*
68293447 GTTCACATTCA
131 ATTCACATTCA
* *
68293458 TCACATAGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGC
1 TCACATAGACCATTCGGCCTTACCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGC
68293523 CTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
66 CTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
68293588 ATTCACATTCA
131 ATTCACATTCA
68293599 TCACATA
1 TCACATA
68293606 AAATCCTAAA
Statistics
Matches: 140, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
141 140 1.00
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.32
Consensus pattern (141 bp):
TCACATAGACCATTCGGCCTTACCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGC
CTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
ATTCACATTCA
Found at i:68296844 original size:26 final size:27
Alignment explanation
Indices: 68296812--68296869 Score: 84
Period size: 26 Copynumber: 2.2 Consensus size: 27
68296802 AATGACATTC
68296812 CTTTCATATTTCGCCAC-AA-GCTTTTT
1 CTTTCATATTTCGCCACAAAGGC-TTTT
*
68296838 CTTTCATATTTTGCCACAAAGGCTTTT
1 CTTTCATATTTCGCCACAAAGGCTTTT
68296865 CTTTC
1 CTTTC
68296870 CTGACGTGTT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
26 16 0.55
27 11 0.38
28 2 0.07
ACGTcount: A:0.19, C:0.26, G:0.09, T:0.47
Consensus pattern (27 bp):
CTTTCATATTTCGCCACAAAGGCTTTT
Found at i:68297673 original size:2 final size:2
Alignment explanation
Indices: 68297666--68297694 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
68297656 GAGACTAGTC
68297666 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
68297695 CATGTCATGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:68301024 original size:16 final size:17
Alignment explanation
Indices: 68300993--68301026 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
68300983 TATTTTTTTA
68300993 TGATAATATAACTTATT
1 TGATAATATAACTTATT
*
68301010 TGATAAT-TTACTTATT
1 TGATAATATAACTTATT
68301026 T
1 T
68301027 TCCCTTACAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.35, C:0.06, G:0.06, T:0.53
Consensus pattern (17 bp):
TGATAATATAACTTATT
Found at i:68304102 original size:27 final size:28
Alignment explanation
Indices: 68304046--68304115 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
68304036 AAACTTGTAC
68304046 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
68304074 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
68304101 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
68304116 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:68304126 original size:27 final size:27
Alignment explanation
Indices: 68304046--68304127 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
68304036 AAACTTGTAC
* *
68304046 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
68304074 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
68304101 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
68304128 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:68312106 original size:27 final size:28
Alignment explanation
Indices: 68312050--68312119 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
68312040 AAACTTGTAC
68312050 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
68312078 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
68312105 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
68312120 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:68312130 original size:27 final size:27
Alignment explanation
Indices: 68312050--68312131 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
68312040 AAACTTGTAC
* *
68312050 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
68312078 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
68312105 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
68312132 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:68314617 original size:24 final size:24
Alignment explanation
Indices: 68314585--68314633 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
68314575 CGGATGTACC
68314585 TAAGACTGTGTTCAGAACAAGGTA
1 TAAGACTGTGTTCAGAACAAGGTA
68314609 TAAGACTGTGTTCAGAACAAGGTA
1 TAAGACTGTGTTCAGAACAAGGTA
68314633 T
1 T
68314634 GGACATTATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.37, C:0.12, G:0.24, T:0.27
Consensus pattern (24 bp):
TAAGACTGTGTTCAGAACAAGGTA
Found at i:68318114 original size:40 final size:40
Alignment explanation
Indices: 68318069--68318231 Score: 193
Period size: 40 Copynumber: 4.1 Consensus size: 40
68318059 CGGCAACAAA
* *
68318069 TCGGCTATATATGGCATTTAGTATGCGATTCGACATAGCT
1 TCGGCTATATATGGCACTTAGTGTGCGATTCGACATAGCT
* * *
68318109 TCGGCTATATATGGAACTTAGTGTGTGATTTGACATAGCT
1 TCGGCTATATATGGCACTTAGTGTGCGATTCGACATAGCT
* * * * *
68318149 TCAGCTATATGTGGCACTTA-TGTGCGAGATCGAGATAGTT
1 TCGGCTATATATGGCACTTAGTGTGCGA-TTCGACATAGCT
* * *
68318189 TCAGCTATATATGGCACTTAGTGTGCGATTTGAGATAGCT
1 TCGGCTATATATGGCACTTAGTGTGCGATTCGACATAGCT
68318229 TCG
1 TCG
68318232 AATATGAACA
Statistics
Matches: 103, Mismatches: 18, Indels: 4
0.82 0.14 0.03
Matches are distributed among these distances:
39 6 0.06
40 90 0.87
41 7 0.07
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (40 bp):
TCGGCTATATATGGCACTTAGTGTGCGATTCGACATAGCT
Found at i:68323931 original size:3 final size:3
Alignment explanation
Indices: 68323923--68324010 Score: 176
Period size: 3 Copynumber: 29.3 Consensus size: 3
68323913 TAGTTTAGTC
68323923 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
68323971 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
68324011 GTTTGCATTA
Statistics
Matches: 85, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 85 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:68325300 original size:26 final size:24
Alignment explanation
Indices: 68325249--68325300 Score: 59
Period size: 26 Copynumber: 2.1 Consensus size: 24
68325239 TATACATGCC
* *
68325249 ATTATACCAAAATGATTGTTGCTA
1 ATTATACCAAAATGATAGTTGATA
*
68325273 ATTATACCCAAAATAGCTAGTTGATA
1 ATTATA-CCAAAAT-GATAGTTGATA
68325299 AT
1 AT
68325301 GTGGCGTTGC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 6 0.26
25 7 0.30
26 10 0.43
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.35
Consensus pattern (24 bp):
ATTATACCAAAATGATAGTTGATA
Found at i:68326051 original size:10 final size:10
Alignment explanation
Indices: 68326017--68326052 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
68326007 CTAAACTGAG
68326017 AAATTTAGAA
1 AAATTTAGAA
*
68326027 AACTTTAGAA
1 AAATTTAGAA
*
68326037 TAATTTAGAA
1 AAATTTAGAA
68326047 AAATTT
1 AAATTT
68326053 CCTTCTTTGG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.53, C:0.03, G:0.08, T:0.36
Consensus pattern (10 bp):
AAATTTAGAA
Found at i:68326128 original size:20 final size:20
Alignment explanation
Indices: 68326100--68326151 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
68326090 GTGTGGACAC
68326100 ACACGCCCGTGTGGCTTGGG
1 ACACGCCCGTGTGGCTTGGG
* *
68326120 ACACACCCGTATGGCTTGGG
1 ACACGCCCGTGTGGCTTGGG
68326140 ACACGCCCGTGT
1 ACACGCCCGTGT
68326152 CCTCAGCCTG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.15, C:0.33, G:0.33, T:0.19
Consensus pattern (20 bp):
ACACGCCCGTGTGGCTTGGG
Found at i:68327255 original size:14 final size:15
Alignment explanation
Indices: 68327231--68327270 Score: 57
Period size: 14 Copynumber: 2.8 Consensus size: 15
68327221 AACTCATTCT
*
68327231 TCATATTTATATATA
1 TCATATATATATATA
68327246 -CATATATATATATA
1 TCATATATATATATA
68327260 TC-TATATATAT
1 TCATATATATAT
68327271 TCTTACCACA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
14 22 0.96
15 1 0.04
ACGTcount: A:0.42, C:0.07, G:0.00, T:0.50
Consensus pattern (15 bp):
TCATATATATATATA
Found at i:68327674 original size:45 final size:45
Alignment explanation
Indices: 68327624--68327709 Score: 145
Period size: 45 Copynumber: 1.9 Consensus size: 45
68327614 CCAAAACATC
68327624 TGTCACATACATCATGAACTCAGACCACAACTCAATGAGTTCAGG
1 TGTCACATACATCATGAACTCAGACCACAACTCAATGAGTTCAGG
* * *
68327669 TGTCACATATATCATGAACTTAGACTACAACTCAATGAGTT
1 TGTCACATACATCATGAACTCAGACCACAACTCAATGAGTT
68327710 GAGATCACAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 38 1.00
ACGTcount: A:0.36, C:0.23, G:0.14, T:0.27
Consensus pattern (45 bp):
TGTCACATACATCATGAACTCAGACCACAACTCAATGAGTTCAGG
Found at i:68331600 original size:40 final size:40
Alignment explanation
Indices: 68331506--68331690 Score: 191
Period size: 40 Copynumber: 4.6 Consensus size: 40
68331496 TATTCGAATG
* * *
68331506 ATATCTGGGCTAAG-TCTCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGATC-CGAAGGCATTCGTGCTA-GTGACT
* * *
68331547 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTCGTGCTAG-TGACT
* *
68331587 ATATCCGGGCTAAGA-CCAGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCC-GAAGGCATTCGTGCTAGTGACT
*
68331627 ATATCCGGGCTAAG-TCCCGAAGGCA-TCTGTGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTC-GTGCTAGTGACT
*
68331667 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
68331691 CTTGTGCAAG
Statistics
Matches: 121, Mismatches: 15, Indels: 17
0.79 0.10 0.11
Matches are distributed among these distances:
39 4 0.03
40 86 0.71
41 29 0.24
42 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTCGTGCTAGTGACT
Found at i:68331672 original size:80 final size:80
Alignment explanation
Indices: 68331506--68331690 Score: 216
Period size: 80 Copynumber: 2.3 Consensus size: 80
68331496 TATTCGAATG
* * * *
68331506 ATATCTGGGCTAAGTCTCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGAC-CGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
*
68331571 ATTCGTGCGAGTTGCT
65 ATTCGTGCGAGTTGCC
* *
68331587 ATATCCGGGCTAAGACCAGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCCGGGCTAAGACC-GAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGAT-CCGAAGG
*
68331650 CA-TCTGTGCTAG-TGACC
64 CATTC-GTGCGAGTTG-CC
68331667 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGA-CCGAAGGC
68331691 CTTGTGCAAG
Statistics
Matches: 91, Mismatches: 8, Indels: 11
0.83 0.07 0.10
Matches are distributed among these distances:
79 5 0.05
80 55 0.60
81 31 0.34
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGCA
TTCGTGCGAGTTGCC
Found at i:68339135 original size:40 final size:40
Alignment explanation
Indices: 68339041--68339225 Score: 191
Period size: 40 Copynumber: 4.6 Consensus size: 40
68339031 TATTCGAATG
* * *
68339041 ATATCCGGGCTAAG-TCCCAAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTCGTGCTA-GTGACT
* * *
68339082 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTCGTGCTAG-TGACT
* *
68339122 ATATCCGGGCTAAGA-CCAGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCC-GAAGGCATTCGTGCTAGTGACT
*
68339162 ATATCCGGGCTAAG-TCCCGAAGGCA-TCTGTGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTC-GTGCTAGTGACT
*
68339202 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
68339226 CTTGTGCAAG
Statistics
Matches: 121, Mismatches: 15, Indels: 17
0.79 0.10 0.11
Matches are distributed among these distances:
39 4 0.03
40 86 0.71
41 30 0.25
42 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTCGTGCTAGTGACT
Found at i:68339208 original size:80 final size:81
Alignment explanation
Indices: 68339041--68339225 Score: 227
Period size: 80 Copynumber: 2.3 Consensus size: 81
68339031 TATTCGAATG
* * *
68339041 ATATCCGGGCTAAGTCCCA-AAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGG
1 ATATCCGGGCTAAG-ACCAGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGG
*
68339105 CATTCGTGCGAGTTGCT
65 CATTCGTGCGAGTTGCC
* *
68339122 ATATCCGGGCTAAGACCAGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCCGGGCTAAGACCAGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGAT-CCGAAGG
*
68339185 CA-TCTGTGCTAG-TGACC
65 CATTC-GTGCGAGTTG-CC
*
68339202 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCAGAAGGC
68339226 CTTGTGCAAG
Statistics
Matches: 92, Mismatches: 8, Indels: 9
0.84 0.07 0.08
Matches are distributed among these distances:
79 5 0.05
80 59 0.64
81 28 0.30
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (81 bp):
ATATCCGGGCTAAGACCAGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
ATTCGTGCGAGTTGCC
Found at i:68356006 original size:93 final size:93
Alignment explanation
Indices: 68355898--68356067 Score: 277
Period size: 93 Copynumber: 1.8 Consensus size: 93
68355888 GCCCATAAGC
* *
68355898 GAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTTGGAATCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACGTTCGCATCCATAAGTGAACTCGGAATCAACTCAA
*
68355963 CGAGTTTGGATGCCTAGTTACATTTCAT
66 CGAGTTCGGATGCCTAGTTACATTTCAT
* * * *
68355991 GAACTCGGACTCAACTCAACGAGTTTGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACGTTCGCATCCATAAGTGAACTCGGAATCAACTCAA
68356056 CGAGTTCGGATG
66 CGAGTTCGGATG
68356068 TTCGCATCCA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.24
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACGTTCGCATCCATAAGTGAACTCGGAATCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAT
Found at i:68356112 original size:46 final size:46
Alignment explanation
Indices: 68355890--68356113 Score: 254
Period size: 46 Copynumber: 4.8 Consensus size: 46
68355880 TGTAACCCGC
* * * **
68355890 CCATAAGCGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCAT
* * * * * *
68355936 CCATAAGTGAACTTGGAATCAACTCAACGAGTTTGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG-TTCGCAT
* * * *
68355982 ACATTTCA-TGAACTCGGACTCAACTCAACGAGTTTGGACGTTCGCAT
1 CCA--TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCAT
68356029 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCAT
* *
68356075 CCATAAGTGAACTCAGACTCAACTCAACGAATTCGGATG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG
68356114 CCCAAATATC
Statistics
Matches: 148, Mismatches: 25, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
45 2 0.01
46 110 0.74
47 34 0.23
48 2 0.01
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.24
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCAT
Found at i:68359289 original size:93 final size:93
Alignment explanation
Indices: 68359174--68359344 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
68359164 GCCCATAAGT
* *
68359174 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
68359239 CCAGCTCGGATGCCTAGTTTCATCTCTC
66 CCAGCTCGGATGCCTAGTTTCATCTCTC
* **
68359267 GAACTCGGACTCAACTCAACGAGTTCGGACATTTTCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
* *
68359332 CGAGTTCGGATGC
66 CCAGCTCGGATGC
68359345 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.27, C:0.30, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CCAGCTCGGATGCCTAGTTTCATCTCTC
Found at i:68359341 original size:46 final size:46
Alignment explanation
Indices: 68359166--68359341 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
68359156 TGTAACCCGC
* * **
68359166 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTTCAT
* *
68359212 CCATAAGTGAACTCGGACTCAACTCAACCAGCTCGGATGCCTAGTTTCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-ATTTTCAT
* *
68359262 CTC-T---CGAACTCGGACTCAACTCAACGAGTTCGGACATTTTCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTTCAT
*
68359305 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
68359342 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 1 0.01
43 9 0.08
44 1 0.01
46 64 0.58
47 27 0.25
49 1 0.01
50 6 0.05
51 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTTCAT
Found at i:68363641 original size:28 final size:28
Alignment explanation
Indices: 68363580--68363677 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
68363570 TCACAAATTG
** * *
68363580 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
68363609 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
68363637 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
68363665 GCACTAAGTGTGC
1 GCACTAAGTGTGC
68363678 GGGCTTATGG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:68371306 original size:29 final size:28
Alignment explanation
Indices: 68371265--68371342 Score: 95
Period size: 28 Copynumber: 2.8 Consensus size: 28
68371255 GTGGGTTCAA
* *
68371265 ATTATACAGCACTAAGTGTGCTAAGTTTG
1 ATTATATAGCACTAAGTGTGC-AAGTTCG
*
68371294 ATTATATAGCACTAAGTGTGCGAGTTCG
1 ATTATATAGCACTAAGTGTGCAAGTTCG
*
68371322 ACTAT-TAAGCACTAAGTGTGC
1 ATTATAT-AGCACTAAGTGTGC
68371343 GGGCTTATTG
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
27 1 0.02
28 23 0.52
29 20 0.45
ACGTcount: A:0.31, C:0.15, G:0.22, T:0.32
Consensus pattern (28 bp):
ATTATATAGCACTAAGTGTGCAAGTTCG
Found at i:68371333 original size:28 final size:28
Alignment explanation
Indices: 68371246--68371343 Score: 94
Period size: 28 Copynumber: 3.5 Consensus size: 28
68371236 TCACAAATTG
* * *
68371246 GCACTAAGTGTG-G-GTTCAAATTATACA
1 GCACTAAGTGTGCGAGTTC-GACTATATA
* * *
68371273 GCACTAAGTGTGCTAAGTTTGATTATATA
1 GCACTAAGTGTGC-GAGTTCGACTATATA
68371302 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTCGACTATAT-A
68371330 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
68371344 GGCTTATTGC
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 13 0.22
28 24 0.40
29 20 0.33
30 3 0.05
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTCGACTATATA
Found at i:68377734 original size:28 final size:28
Alignment explanation
Indices: 68377673--68377770 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
68377663 TCACAAATTG
** * *
68377673 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
68377702 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
68377730 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
68377758 GCACTAAGTGTGC
1 GCACTAAGTGTGC
68377771 GGGCTTATGC
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:68383037 original size:42 final size:42
Alignment explanation
Indices: 68382970--68383089 Score: 161
Period size: 43 Copynumber: 2.8 Consensus size: 42
68382960 AGGGTTACTA
*
68382970 AGATTACATGTAAGACCATATCTGGGATATGGCATCAATATG
1 AGATTACATGTAAGACCATATCTGGGATATGGCATCAATACG
* * * *
68383012 AGACTT-CGTGTAAGACCATACCTGGGCTATTGGCATCGATACG
1 AGA-TTACATGTAAGACCATATCTGGGATA-TGGCATCAATACG
*
68383055 AGATTACATGTAAGACCATATCTGAGATATGGCAT
1 AGATTACATGTAAGACCATATCTGGGATATGGCAT
68383090 TGGTATGGTA
Statistics
Matches: 66, Mismatches: 9, Indels: 6
0.81 0.11 0.07
Matches are distributed among these distances:
42 31 0.47
43 35 0.53
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.28
Consensus pattern (42 bp):
AGATTACATGTAAGACCATATCTGGGATATGGCATCAATACG
Found at i:68385127 original size:180 final size:180
Alignment explanation
Indices: 68384855--68385198 Score: 501
Period size: 180 Copynumber: 1.9 Consensus size: 180
68384845 GAGCTACGAA
* * * * *
68384855 ACTCCAAATTAAGACCTGTTAATTTTTCCAAAAACTAGACTCACATATATTCTTACCATAAAATT
1 ACTCCAAATTAAGAACAGCTAATTTTCCCAAAAACTAGACTCACAAATATTCTTACCATAAAATT
68384920 TTCAGAATTTTTGGTTTAGCAAATTAGTACAGTTTATGCATTAAAGT-TACCCCTATTTCACTAT
66 TTCAGAATTTTTGGTTTAGCAAATTAGTACAGTTTATGCATTAAA-TATACCCCTATTTCACTAT
68384984 CCAACAGTTCCAACCTCTCTTCACTAAAAATTATTTGTCTCATTGTACGGG
130 CCAACAGTTCCAACCTCTCTTCACTAAAAATTATTTGTCTCATTGTACGGG
*
68385035 ACTCCAAATTAAGAACAGCTAATTTTCCCAAAAATTAGACTCACAAATATTCTTACCATAAAATT
1 ACTCCAAATTAAGAACAGCTAATTTTCCCAAAAACTAGACTCACAAATATTCTTACCATAAAATT
* * * * * *
68385100 TTTAGAATTTTTGGTTTCGCCAATTAGTACAGTTTATTCATTAAATATACCCCTGTTTCACTGTC
66 TTCAGAATTTTTGGTTTAGCAAATTAGTACAGTTTATGCATTAAATATACCCCTATTTCACTATC
** * * * * *
68385165 TGATAGTTCTAATCTTTCTTTACTAAAAATTATT
131 CAACAGTTCCAACCTCTCTTCACTAAAAATTATT
68385199 AATCTCATGG
Statistics
Matches: 144, Mismatches: 19, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
179 1 0.01
180 143 0.99
ACGTcount: A:0.33, C:0.20, G:0.09, T:0.38
Consensus pattern (180 bp):
ACTCCAAATTAAGAACAGCTAATTTTCCCAAAAACTAGACTCACAAATATTCTTACCATAAAATT
TTCAGAATTTTTGGTTTAGCAAATTAGTACAGTTTATGCATTAAATATACCCCTATTTCACTATC
CAACAGTTCCAACCTCTCTTCACTAAAAATTATTTGTCTCATTGTACGGG
Found at i:68385904 original size:52 final size:50
Alignment explanation
Indices: 68385779--68385912 Score: 160
Period size: 50 Copynumber: 2.6 Consensus size: 50
68385769 CTCTGGTACG
* * **
68385779 CATAGTAGCCTGCACTTAGTACTACAAATGCGACCTAAAAATCTGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCTAAAAATCTGAAACA
* * * *
68385829 CGTAGTAGCCTGCACTTAATACTACACATGTGACCTAAAACGGTCTTAAACA
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCTAAAA--ATCTGAAACA
**
68385881 CATAGTAGCCTGCACACAGTACTACACATGTG
1 CATAGTAGCCTGCACTTAGTACTACACATGTG
68385913 TTCTCACAAT
Statistics
Matches: 70, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
50 36 0.51
52 34 0.49
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.24
Consensus pattern (50 bp):
CATAGTAGCCTGCACTTAGTACTACACATGTGACCTAAAAATCTGAAACA
Found at i:68386866 original size:6 final size:6
Alignment explanation
Indices: 68386845--68386987 Score: 96
Period size: 6 Copynumber: 23.2 Consensus size: 6
68386835 TATTAGAACT
* * * * * *
68386845 AGAATC AAAATG AGAATC AGAATC AG-GTGAC ACAATC AGAATT AAAATC
1 AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC
* *
68386894 AGAATC AGAATC AGAATC AGAATT AGGTAAT- AGAATC AGAATC AGTATC
1 AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC
* *
68386943 AAGTAA-C AGAACC AGAATC AGAATT AGGTAA-C AGAATC AGAATC A
1 -AG-AATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC A
68386988 ATATTAGGTA
Statistics
Matches: 107, Mismatches: 18, Indels: 24
0.72 0.12 0.16
Matches are distributed among these distances:
5 8 0.07
6 83 0.78
7 9 0.08
8 7 0.07
ACGTcount: A:0.50, C:0.14, G:0.17, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:68386885 original size:25 final size:25
Alignment explanation
Indices: 68386857--68387016 Score: 173
Period size: 25 Copynumber: 6.4 Consensus size: 25
68386847 AATCAAAATG
* *
68386857 AGAATCAGAATCAGGTGACACAATC
1 AGAATCAGAATCAGGTAACAGAATC
* *
68386882 AGAATTAAAATCA-G-AATCAGAATC
1 AGAATCAGAATCAGGTAA-CAGAATC
* *
68386906 AGAATCAGAATTAGGTAATAGAATC
1 AGAATCAGAATCAGGTAACAGAATC
* * *
68386931 AGAATCAGTATCAAGTAACAGAACC
1 AGAATCAGAATCAGGTAACAGAATC
*
68386956 AGAATCAGAATTAGGTAACAGAATC
1 AGAATCAGAATCAGGTAACAGAATC
*
68386981 AGAATCA-ATATTAGGTAACAGAATC
1 AGAATCAGA-ATCAGGTAACAGAATC
*
68387006 AGAATTAGAAT
1 AGAATCAGAAT
68387017 GTGAATGTAA
Statistics
Matches: 112, Mismatches: 18, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
23 1 0.01
24 18 0.16
25 90 0.80
26 3 0.03
ACGTcount: A:0.49, C:0.13, G:0.17, T:0.21
Consensus pattern (25 bp):
AGAATCAGAATCAGGTAACAGAATC
Found at i:68386901 original size:18 final size:18
Alignment explanation
Indices: 68386890--68387016 Score: 75
Period size: 19 Copynumber: 6.8 Consensus size: 18
68386880 TCAGAATTAA
*
68386890 AATCAGAATCAGAATCAG
1 AATCAGAATTAGAATCAG
68386908 AATCAGAATTAGGTAAT-AG
1 AATCAGAATTA-G-AATCAG
* *
68386927 AATCAGAATCAGTATCAAG
1 AATCAGAATTAGAATC-AG
**
68386946 TAA-CAGAACCAGAATCAG
1 -AATCAGAATTAGAATCAG
* *
68386964 AATTAGGTAA-CAGAATCAG
1 AATCA-G-AATTAGAATCAG
68386983 AATCA-ATATTAGGTAA-CAG
1 AATCAGA-ATTA-G-AATCAG
68387002 AATCAGAATTAGAAT
1 AATCAGAATTAGAAT
68387017 GTGAATGTAA
Statistics
Matches: 87, Mismatches: 8, Indels: 28
0.71 0.07 0.23
Matches are distributed among these distances:
16 1 0.01
17 7 0.08
18 16 0.18
19 53 0.61
20 10 0.11
ACGTcount: A:0.49, C:0.13, G:0.17, T:0.21
Consensus pattern (18 bp):
AATCAGAATTAGAATCAG
Found at i:68386965 original size:50 final size:50
Alignment explanation
Indices: 68386857--68387016 Score: 198
Period size: 50 Copynumber: 3.2 Consensus size: 50
68386847 AATCAAAATG
* * * * *
68386857 AGAATCAGAATCAGGTGACACAATCAGAATTAAAATC-AG-AATCAGAATC
1 AGAATCAGAATTAGGTAACAGAATCAGAATCAATATCAAGTAA-CAGAATC
* * *
68386906 AGAATCAGAATTAGGTAATAGAATCAGAATCAGTATCAAGTAACAGAACC
1 AGAATCAGAATTAGGTAACAGAATCAGAATCAATATCAAGTAACAGAATC
* *
68386956 AGAATCAGAATTAGGTAACAGAATCAGAATCAATATTAGGTAACAGAATC
1 AGAATCAGAATTAGGTAACAGAATCAGAATCAATATCAAGTAACAGAATC
*
68387006 AGAATTAGAAT
1 AGAATCAGAAT
68387017 GTGAATGTAA
Statistics
Matches: 95, Mismatches: 14, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
49 30 0.32
50 63 0.66
51 2 0.02
ACGTcount: A:0.49, C:0.13, G:0.17, T:0.21
Consensus pattern (50 bp):
AGAATCAGAATTAGGTAACAGAATCAGAATCAATATCAAGTAACAGAATC
Found at i:68387480 original size:27 final size:27
Alignment explanation
Indices: 68387448--68387679 Score: 241
Period size: 27 Copynumber: 8.6 Consensus size: 27
68387438 TACCCCATAA
* * *
68387448 GGGTATCTCGGTAATTCTACCTTACAG
1 GGGTATTTCAGTAATTCTACCCTACAG
*
68387475 GAGTATTTCAGTAATTCTACCCTACAG
1 GGGTATTTCAGTAATTCTACCCTACAG
* * *
68387502 GGGTATTTCGGTATTTCTACCCTACAA
1 GGGTATTTCAGTAATTCTACCCTACAG
*
68387529 GGGTATTTCAATAATTCTACCCTACAG
1 GGGTATTTCAGTAATTCTACCCTACAG
* * *
68387556 GGGTATTTTAGTAATTCTACCGTATAG
1 GGGTATTTCAGTAATTCTACCCTACAG
* * *
68387583 GGGTAATTCGGTATTTCTACCCTACAG
1 GGGTATTTCAGTAATTCTACCCTACAG
* * *
68387610 GGATATTTC-GATATTTCTACCCTACAA
1 GGGTATTTCAG-TAATTCTACCCTACAG
* * * * *
68387637 GGTTATTTCAGCATTTCTAACCTACAA
1 GGGTATTTCAGTAATTCTACCCTACAG
*
68387664 GGGTATTTCGGTAATT
1 GGGTATTTCAGTAATT
68387680 TTGTAAATTG
Statistics
Matches: 171, Mismatches: 32, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
26 1 0.01
27 169 0.99
28 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (27 bp):
GGGTATTTCAGTAATTCTACCCTACAG
Found at i:68387555 original size:81 final size:80
Alignment explanation
Indices: 68387459--68387676 Score: 285
Period size: 81 Copynumber: 2.7 Consensus size: 80
68387449 GGTATCTCGG
*
68387459 TAATTCTACCTTACAGGAGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCC
1 TAATTCTACCCTACAGG-GTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCC
68387524 TACAAGGG-TATTTCAA
65 TAC-AGGGATATTTCAA
* * * *
68387540 TAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCGTATAGGGGTAATTCGGTATTTCTACCC
1 TAATTCTACCCTACA-GGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCC
*
68387605 TACAGGGATATTTCGA
65 TACAGGGATATTTCAA
* * * * * *
68387621 TATTTCTACCCTACAAGGTTATTTCAGCATTTCTAACCTACAAGGGTATTTCGGTA
1 TAATTCTACCCTAC-AGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTA
68387677 ATTTTGTAAA
Statistics
Matches: 118, Mismatches: 16, Indels: 6
0.84 0.11 0.04
Matches are distributed among these distances:
80 4 0.03
81 111 0.94
82 3 0.03
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.36
Consensus pattern (80 bp):
TAATTCTACCCTACAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCT
ACAGGGATATTTCAA
Found at i:68387693 original size:27 final size:27
Alignment explanation
Indices: 68387662--68388172 Score: 132
Period size: 27 Copynumber: 18.9 Consensus size: 27
68387652 TCTAACCTAC
68387662 AAGGGTATTTCGGTAATTTTGTAAATT
1 AAGGGTATTTCGGTAATTTTGTAAATT
* *** * *
68387689 GAGGGTAAAACAGTAATTCTGTAAATT
1 AAGGGTATTTCGGTAATTTTGTAAATT
** * *
68387716 AAGGGTACTTT-GGTAATTTTACAAGTC
1 AAGGGTA-TTTCGGTAATTTTGTAAATT
* * ** ** *
68387743 GAGGGTATTTTC-ATAATTTTACAGGTC
1 AAGGGTA-TTTCGGTAATTTTGTAAATT
* * *** *
68387770 GAGGGTATTTCAGTAATTTCACAAATC
1 AAGGGTATTTCGGTAATTTTGTAAATT
* * ** **
68387797 AGGGGTATTTTGGTAATTTTACAACCT
1 AAGGGTATTTCGGTAATTTTGTAAATT
* * * ** **
68387824 AGGGGTATTTTGATAATTTTACAAACC
1 AAGGGTATTTCGGTAATTTTGTAAATT
* * * ** *
68387851 AGGGGGATTTTGGTAATTTTACAAACT
1 AAGGGTATTTCGGTAATTTTGTAAATT
* * **
68387878 -AGAGGTATTTTGGTAATTTTATAAACC
1 AAG-GGTATTTCGGTAATTTTGTAAATT
* * ** *
68387905 ATGGGTATTTCAGTAATTTTACAAACT
1 AAGGGTATTTCGGTAATTTTGTAAATT
* **
68387932 AAGGGTATTTTGGTAATTTTGTAAACC
1 AAGGGTATTTCGGTAATTTTGTAAATT
* ** **
68387959 AAGGGTATTTTGGTAATTTTACAAACC
1 AAGGGTATTTCGGTAATTTTGTAAATT
* * * **
68387986 AGGGGTATTTTGGTAATTTTATAAACC
1 AAGGGTATTTCGGTAATTTTGTAAATT
** ** *
68388013 AAGGGTATTTTAGTAATTTTACAAA-C
1 AAGGGTATTTCGGTAATTTTGTAAATT
* * *
68388039 CAGAGGTATTTTGGTAATTTTGTAAACT
1 AAG-GGTATTTCGGTAATTTTGTAAATT
* ** **
68388067 AAGGGTATTTTGGTAATTTTACAAACC
1 AAGGGTATTTCGGTAATTTTGTAAATT
* * * * **
68388094 AGGGGTATTTTGGTGATTTTATAAACC
1 AAGGGTATTTCGGTAATTTTGTAAATT
** ** *
68388121 AAGGGTATTTTAGTAATTTTACAAACT
1 AAGGGTATTTCGGTAATTTTGTAAATT
* *
68388148 AGGGGTATTTTC-GTAATTTGGTAAA
1 AAGGGTA-TTTCGGTAATTTTGTAAA
68388173 CTAAAGTATT
Statistics
Matches: 394, Mismatches: 82, Indels: 16
0.80 0.17 0.03
Matches are distributed among these distances:
26 8 0.02
27 380 0.96
28 6 0.02
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.39
Consensus pattern (27 bp):
AAGGGTATTTCGGTAATTTTGTAAATT
Found at i:68388173 original size:54 final size:54
Alignment explanation
Indices: 68387718--68388166 Score: 549
Period size: 54 Copynumber: 8.3 Consensus size: 54
68387708 TGTAAATTAA
* * ** * ** ** *
68387718 GGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTTCATAATTTTAC-AGGTCG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAACTAG
** * * * * *
68387771 AGGGTATTTCAGTAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAACCTAG
1 -GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAACTAG
* * * *
68387826 GGGTATTTTGATAATTTTACAAACCAGGGGGATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAACTAG
* * ** *
68387880 AGGTATTTTGGTAATTTTATAAACCATGGGTATTTCAGTAATTTTACAAACTAA
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAACTAG
* *
68387934 GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAACTAG
* *
68387988 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAACTAG
* * * *
68388042 AGGTATTTTGGTAATTTTGTAAACTAAGGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAACTAG
* *
68388096 GGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAACTAG
*
68388150 GGGTATTTTCGTAATTT
1 GGGTATTTTGGTAATTT
68388167 GGTAAACTAA
Statistics
Matches: 346, Mismatches: 48, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
54 343 0.99
55 3 0.01
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAACTAG
Found at i:68388175 original size:27 final size:27
Alignment explanation
Indices: 68387718--68388166 Score: 499
Period size: 27 Copynumber: 16.6 Consensus size: 27
68387708 TGTAAATTAA
* **
68387718 GGGTACTTTGGTAATTTTACAAGTC-G
1 GGGTATTTTGGTAATTTTACAAACCAG
** ***
68387744 AGGGTATTTTCATAATTTTACAGGTC-G
1 -GGGTATTTTGGTAATTTTACAAACCAG
** * *
68387771 AGGGTATTTCAGTAATTTCACAAATCAG
1 -GGGTATTTTGGTAATTTTACAAACCAG
68387799 GGGTATTTTGGTAATTTTAC-AACCTAG
1 GGGTATTTTGGTAATTTTACAAACC-AG
*
68387826 GGGTATTTTGATAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
68387853 GGGGATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
68387880 AGGTATTTTGGTAATTTTATAAACCAT
1 GGGTATTTTGGTAATTTTACAAACCAG
** * *
68387907 GGGTATTTCAGTAATTTTACAAACTAA
1 GGGTATTTTGGTAATTTTACAAACCAG
** *
68387934 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
68387961 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
68387988 GGGTATTTTGGTAATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
68388015 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* ** * *
68388042 AGGTATTTTGGTAATTTTGTAAACTAA
1 GGGTATTTTGGTAATTTTACAAACCAG
68388069 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
68388096 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
68388123 GGGTATTTTAGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
68388150 GGGTATTTTCGTAATTT
1 GGGTATTTTGGTAATTT
68388167 GGTAAACTAA
Statistics
Matches: 357, Mismatches: 62, Indels: 6
0.84 0.15 0.01
Matches are distributed among these distances:
26 3 0.01
27 349 0.98
28 5 0.01
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:68393130 original size:30 final size:32
Alignment explanation
Indices: 68393075--68393135 Score: 92
Period size: 32 Copynumber: 2.0 Consensus size: 32
68393065 TCCTATTTTT
68393075 AGGGATTGATTAGAATATCTTATGGGATATTA
1 AGGGATTGATTAGAATATCTTATGGGATATTA
68393107 AGGGATTGATTA-AGAT-T-TTATGGGATATT
1 AGGGATTGATTAGA-ATATCTTATGGGATATT
68393136 TTAAATTAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
30 12 0.43
31 2 0.07
32 14 0.50
ACGTcount: A:0.33, C:0.02, G:0.26, T:0.39
Consensus pattern (32 bp):
AGGGATTGATTAGAATATCTTATGGGATATTA
Found at i:68400084 original size:8 final size:8
Alignment explanation
Indices: 68400065--68400106 Score: 50
Period size: 9 Copynumber: 5.0 Consensus size: 8
68400055 AATATTAAAA
68400065 ATATTTTT
1 ATATTTTT
68400073 -TATTTTT
1 ATATTTTT
68400080 ATATTTTTT
1 ATA-TTTTT
68400089 AATATTTTT
1 -ATATTTTT
68400098 AGTATTTTT
1 A-TATTTTT
68400107 TTAAATTTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
7 7 0.23
8 3 0.10
9 17 0.57
10 3 0.10
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.74
Consensus pattern (8 bp):
ATATTTTT
Found at i:68400103 original size:19 final size:19
Alignment explanation
Indices: 68400073--68400117 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 19
68400063 AAATATTTTT
68400073 TATTTTTATA-TTTTTTAA
1 TATTTTTATATTTTTTTAA
68400091 TATTTTTAGTATTTTTTTAA
1 TATTTTTA-TATTTTTTTAA
68400111 -ATTTTTA
1 TATTTTTA
68400118 AAATTTTAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
18 8 0.32
19 9 0.36
20 8 0.32
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (19 bp):
TATTTTTATATTTTTTTAA
Found at i:68400123 original size:19 final size:19
Alignment explanation
Indices: 68400049--68400124 Score: 61
Period size: 19 Copynumber: 4.1 Consensus size: 19
68400039 GATTAATTAA
* *
68400049 TTTTTAAATATTAAAAATAT
1 TTTTTAAATTTTTAAAAT-T
*
68400069 TTTTT--ATTTTT-ATA-T
1 TTTTTAAATTTTTAAAATT
**
68400084 TTTTTAATATTTTTAGTATT
1 TTTTTAA-ATTTTTAAAATT
68400104 TTTTTAAATTTTTAAAATT
1 TTTTTAAATTTTTAAAATT
68400123 TT
1 TT
68400125 AAAAAATTAA
Statistics
Matches: 45, Mismatches: 6, Indels: 11
0.73 0.10 0.18
Matches are distributed among these distances:
15 6 0.13
17 2 0.04
18 10 0.22
19 14 0.31
20 13 0.29
ACGTcount: A:0.33, C:0.00, G:0.01, T:0.66
Consensus pattern (19 bp):
TTTTTAAATTTTTAAAATT
Found at i:68407102 original size:19 final size:20
Alignment explanation
Indices: 68407064--68407103 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
68407054 TTTTGGGCTA
68407064 ATTTTTTACTTAAAAGAAGT
1 ATTTTTTACTTAAAAGAAGT
68407084 ATTTTTT-CTTTAAAA-AAGT
1 ATTTTTTAC-TTAAAAGAAGT
68407103 A
1 A
68407104 ACTTGTTTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.32
20 13 0.68
ACGTcount: A:0.40, C:0.05, G:0.07, T:0.47
Consensus pattern (20 bp):
ATTTTTTACTTAAAAGAAGT
Found at i:68419754 original size:20 final size:20
Alignment explanation
Indices: 68419729--68419766 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
68419719 CTGTTTAGTG
68419729 AAAATTTTTCT-AAGTTTTGT
1 AAAA-TTTTCTAAAGTTTTGT
68419749 AAAATTTTCTAAAGTTTT
1 AAAATTTTCTAAAGTTTT
68419767 CAGTTTAGTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.34, C:0.05, G:0.08, T:0.53
Consensus pattern (20 bp):
AAAATTTTCTAAAGTTTTGT
Found at i:68420120 original size:43 final size:40
Alignment explanation
Indices: 68420025--68420141 Score: 132
Period size: 43 Copynumber: 2.9 Consensus size: 40
68420015 ATAAATATTC
*
68420025 TATTGTTAATAA--TATTTTAAGCTAAAATTTTGGATTTTTG
1 TATTGTTAATAACTTA-TTTAATCTAAAATTTT-GATTTTTG
*
68420065 TATTGTTAATAACTTATTTAATCTAAAATTTTGATTTTTTTTT
1 TATTGTTAATAACTTATTTAATCTAAAATTTTGA---TTTTTG
*
68420108 TATTGTTAATAACATTATTTAAT-TAAACTTTTGA
1 TATTGTTAATAAC-TTATTTAATCTAAAATTTTGA
68420142 GGGATAAGTA
Statistics
Matches: 68, Mismatches: 3, Indels: 9
0.85 0.04 0.11
Matches are distributed among these distances:
40 14 0.21
41 15 0.22
42 2 0.03
43 28 0.41
44 9 0.13
ACGTcount: A:0.33, C:0.04, G:0.08, T:0.55
Consensus pattern (40 bp):
TATTGTTAATAACTTATTTAATCTAAAATTTTGATTTTTG
Found at i:68426413 original size:19 final size:19
Alignment explanation
Indices: 68426389--68426430 Score: 84
Period size: 19 Copynumber: 2.2 Consensus size: 19
68426379 ATAAAGTGTT
68426389 AATTGAGAAAAATTAGTTC
1 AATTGAGAAAAATTAGTTC
68426408 AATTGAGAAAAATTAGTTC
1 AATTGAGAAAAATTAGTTC
68426427 AATT
1 AATT
68426431 AATGGGTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.48, C:0.05, G:0.14, T:0.33
Consensus pattern (19 bp):
AATTGAGAAAAATTAGTTC
Found at i:68426716 original size:2 final size:2
Alignment explanation
Indices: 68426709--68426751 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
68426699 TGATGAATGG
68426709 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
68426751 T
1 T
68426752 TATTGAAATT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:68426980 original size:41 final size:42
Alignment explanation
Indices: 68426935--68427016 Score: 114
Period size: 42 Copynumber: 2.0 Consensus size: 42
68426925 TAACTTATAT
*
68426935 GAGTTTCAG-TTAACCCTAATGGGTTTT-AGTTCAACTCTTAC
1 GAGTTTCAGTTTAACCCTAATAGGTTTTCA-TTCAACTCTTAC
* *
68426976 GAGTTTCAGTTTAACCCTACTAGGTTTTCATTCAGCTCTTA
1 GAGTTTCAGTTTAACCCTAATAGGTTTTCATTCAACTCTTA
68427017 TGAGCTTCTG
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
41 9 0.25
42 26 0.72
43 1 0.03
ACGTcount: A:0.23, C:0.21, G:0.16, T:0.40
Consensus pattern (42 bp):
GAGTTTCAGTTTAACCCTAATAGGTTTTCATTCAACTCTTAC
Found at i:68427002 original size:21 final size:21
Alignment explanation
Indices: 68426937--68427002 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
68426927 ACTTATATGA
* *
68426937 GTTTCAG-TTAACCCTAATGG
1 GTTTCAGTTTAACCCTACTAG
* * * *
68426957 GTTTTAGTTCAACTCTTACGA-
1 GTTTCAGTTTAAC-CCTACTAG
68426978 GTTTCAGTTTAACCCTACTAG
1 GTTTCAGTTTAACCCTACTAG
68426999 GTTT
1 GTTT
68427003 TCATTCAGCT
Statistics
Matches: 33, Mismatches: 10, Indels: 5
0.69 0.21 0.10
Matches are distributed among these distances:
20 11 0.33
21 19 0.58
22 3 0.09
ACGTcount: A:0.23, C:0.20, G:0.17, T:0.41
Consensus pattern (21 bp):
GTTTCAGTTTAACCCTACTAG
Found at i:68430120 original size:77 final size:77
Alignment explanation
Indices: 68429993--68430149 Score: 314
Period size: 77 Copynumber: 2.0 Consensus size: 77
68429983 CCAAACATGA
68429993 TCTACAGTAGTATTCAAGGATTGATGAGCAAAAAGTAAAATAAAAATTATCCTTCTTTCTCTAAA
1 TCTACAGTAGTATTCAAGGATTGATGAGCAAAAAGTAAAATAAAAATTATCCTTCTTTCTCTAAA
68430058 CAAGATTTTGCT
66 CAAGATTTTGCT
68430070 TCTACAGTAGTATTCAAGGATTGATGAGCAAAAAGTAAAATAAAAATTATCCTTCTTTCTCTAAA
1 TCTACAGTAGTATTCAAGGATTGATGAGCAAAAAGTAAAATAAAAATTATCCTTCTTTCTCTAAA
68430135 CAAGATTTTGCT
66 CAAGATTTTGCT
68430147 TCT
1 TCT
68430150 TACTCGGTGT
Statistics
Matches: 80, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
77 80 1.00
ACGTcount: A:0.38, C:0.15, G:0.13, T:0.34
Consensus pattern (77 bp):
TCTACAGTAGTATTCAAGGATTGATGAGCAAAAAGTAAAATAAAAATTATCCTTCTTTCTCTAAA
CAAGATTTTGCT
Found at i:68434514 original size:13 final size:14
Alignment explanation
Indices: 68434485--68434521 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
68434475 TTACTCTCAA
68434485 TTTTAC-AAAAAGG
1 TTTTACTAAAAAGG
*
68434498 TTTTACTAAAAA-T
1 TTTTACTAAAAAGG
68434511 TTTTACTAAAA
1 TTTTACTAAAA
68434522 TTATAATTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 17 0.77
14 5 0.23
ACGTcount: A:0.46, C:0.08, G:0.05, T:0.41
Consensus pattern (14 bp):
TTTTACTAAAAAGG
Found at i:68440811 original size:70 final size:70
Alignment explanation
Indices: 68440698--68441351 Score: 533
Period size: 70 Copynumber: 9.3 Consensus size: 70
68440688 GATAGGGCAT
** * * ** *
68440698 TCTTAAGGCTCACAGGTTCAATATCACAGCCTCTAAAATAGTTAGCACGAGCCTACACTCCCAAC
1 TCTTAAGGCTCGTAGGTTCAATACCACAACCTCTAAAATAGTTAGCGTGAGCCTACGCTCCCAAC
68440763 TGTAA
66 TGTAA
* * *
68440768 TCTTAAGGCTCGTAGGTTCAATACC-CAAACCTTTAAAACAGTTAGCGCGAGCCTACGCTCCCAA
1 TCTTAAGGCTCGTAGGTTCAATACCAC-AACCTCTAAAATAGTTAGCGTGAGCCTACGCTCCCAA
*
68440832 CTATAA
65 CTGTAA
* * * * * * * *
68440838 TCTTAAGGCTTGCAAGTTCAATACCACAACCTCCAAAATAGTTAGCGTAAGCCTACACTCCTAGC
1 TCTTAAGGCTCGTAGGTTCAATACCACAACCTCTAAAATAGTTAGCGTGAGCCTACGCTCCCAAC
*
68440903 TCTAA
66 TGTAA
* * * ** *
68440908 TATTAAGGCTCGTAGGTTCAATACCACAGCCTCCAAAATAGTTAATGTGAGCCTACGCTCCCATC
1 TCTTAAGGCTCGTAGGTTCAATACCACAACCTCTAAAATAGTTAGCGTGAGCCTACGCTCCCAAC
68440973 TGTAA
66 TGTAA
* * * * * * * *
68440978 TCTTAAGGTTCGTAGGCTCAATACAACAACCTCCAAAGTAATTACCGTGAGCCTATGCTCCCAAC
1 TCTTAAGGCTCGTAGGTTCAATACCACAACCTCTAAAATAGTTAGCGTGAGCCTACGCTCCCAAC
68441043 TAG-AA
66 T-GTAA
**** * * * *
68441048 TCTTAAGGCTCGTAGGTTCAATATTGTAACCTCTAAAATAGTTAGCGCGAGCTTATGCTCCCAAA
1 TCTTAAGGCTCGTAGGTTCAATACCACAACCTCTAAAATAGTTAGCGTGAGCCTACGCTCCCAAC
*
68441113 TGGAA
66 TGTAA
* * * * * ** * *
68441118 TCTTAAGGTTTGCAAGTTCAGTACTGCATCCTCTAAAAGAGTTAGCGTGAGCCTACGCTCCCAAC
1 TCTTAAGGCTCGTAGGTTCAATACCACAACCTCTAAAATAGTTAGCGTGAGCCTACGCTCCCAAC
**
68441183 TGGGA
66 TGTAA
** * * * * * * * * * *
68441188 TCTTTTGGGTCGTAGGTTCAATACCACAGCCTTTAAAACAATTAGCATAAGCTTACACTCCC-AG
1 TCTTAAGGCTCGTAGGTTCAATACCACAACCTCTAAAATAGTTAGCGTGAGCCTACGCTCCCAAC
*
68441252 TTTGAA
66 TGT-AA
* * * * * * * * * * * *
68441258 TCCTAAGTCTCGCAGGTTCAATAACGCAGCCTCCAAAATAGTTAACGCGAGCTTACGCTCTCAGC
1 TCTTAAGGCTCGTAGGTTCAATACCACAACCTCTAAAATAGTTAGCGTGAGCCTACGCTCCCAAC
68441323 TAG-AA
66 T-GTAA
68441328 TCTTAAGGCTCGTAGGTTCAATAC
1 TCTTAAGGCTCGTAGGTTCAATAC
68441352 TGCAGCCTCC
Statistics
Matches: 460, Mismatches: 117, Indels: 14
0.78 0.20 0.02
Matches are distributed among these distances:
69 4 0.01
70 453 0.98
71 3 0.01
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (70 bp):
TCTTAAGGCTCGTAGGTTCAATACCACAACCTCTAAAATAGTTAGCGTGAGCCTACGCTCCCAAC
TGTAA
Found at i:68440951 original size:140 final size:140
Alignment explanation
Indices: 68440698--68441383 Score: 588
Period size: 140 Copynumber: 4.9 Consensus size: 140
68440688 GATAGGGCAT
** * * * ** *
68440698 TCTTAAGGCTCACAGGTTCAATATCACAGCCTCTAAAATAGTTAGCACGAGCCTACACTCCCAAC
1 TCTTAAGGCTTGCAGGTTCAATACCACAACCTCCAAAATAGTTAGCGTGAGCCTACGCTCCCAAC
* *
68440763 T-GTAATCTTAAGGCTCGTAGGTTCAATACC-CAAACCTTTAAAACAGTTAGCGCGAGCCTACGC
66 TAG-AATCTTAAGGCTCGTAGGTTCAATACCAC-AGCCTCTAAAACAGTTAGCGCGAGCCTACGC
*
68440826 TCCCAACTATAA
129 TCCCAACTGTAA
* * * * *
68440838 TCTTAAGGCTTGCAAGTTCAATACCACAACCTCCAAAATAGTTAGCGTAAGCCTACACTCCTAGC
1 TCTTAAGGCTTGCAGGTTCAATACCACAACCTCCAAAATAGTTAGCGTGAGCCTACGCTCCCAAC
** * * * ** *
68440903 TCTAATATTAAGGCTCGTAGGTTCAATACCACAGCCTCCAAAATAGTTAATGTGAGCCTACGCTC
66 TAGAATCTTAAGGCTCGTAGGTTCAATACCACAGCCTCTAAAACAGTTAGCGCGAGCCTACGCTC
*
68440968 CCATCTGTAA
131 CCAACTGTAA
* * * * * * *
68440978 TCTTAAGG-TTCGTAGGCTCAATACAACAACCTCCAAAGTAATTACCGTGAGCCTATGCTCCCAA
1 TCTTAAGGCTT-GCAGGTTCAATACCACAACCTCCAAAATAGTTAGCGTGAGCCTACGCTCCCAA
**** * * * *
68441042 CTAGAATCTTAAGGCTCGTAGGTTCAATATTGTAACCTCTAAAATAGTTAGCGCGAGCTTATGCT
65 CTAGAATCTTAAGGCTCGTAGGTTCAATACCACAGCCTCTAAAACAGTTAGCGCGAGCCTACGCT
* *
68441107 CCCAAATGGAA
130 CCCAACTGTAA
* * * ** * * *
68441118 TCTTAAGGTTTGCAAGTTCAGTACTGCATCCTCTAAAAGAGTTAGCGTGAGCCTACGCTCCCAAC
1 TCTTAAGGCTTGCAGGTTCAATACCACAACCTCCAAAATAGTTAGCGTGAGCCTACGCTCCCAAC
* * ** * * * *** * *
68441183 TGGGATCTTTTGGGTCGTAGGTTCAATACCACAGCCTTTAAAACAATTAGCATAAGCTTACACTC
66 TAGAATCTTAAGGCTCGTAGGTTCAATACCACAGCCTCTAAAACAGTTAGCGCGAGCCTACGCTC
* *
68441248 CC-AGTTTGAA
131 CCAACTGT-AA
* * * * * * * * * * *
68441258 TCCTAAGTCTCGCAGGTTCAATAACGCAGCCTCCAAAATAGTTAACGCGAGCTTACGCTCTCAGC
1 TCTTAAGGCTTGCAGGTTCAATACCACAACCTCCAAAATAGTTAGCGTGAGCCTACGCTCCCAAC
** * * *
68441323 TAGAATCTTAAGGCTCGTAGGTTCAATACTGCAGCCTCCAAAACAGTTAGGGCAAGCCTAC
66 TAGAATCTTAAGGCTCGTAGGTTCAATACCACAGCCTCTAAAACAGTTAGCGCGAGCCTAC
68441384 TGATACGTGA
Statistics
Matches: 426, Mismatches: 115, Indels: 10
0.77 0.21 0.02
Matches are distributed among these distances:
139 4 0.01
140 419 0.98
141 3 0.01
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (140 bp):
TCTTAAGGCTTGCAGGTTCAATACCACAACCTCCAAAATAGTTAGCGTGAGCCTACGCTCCCAAC
TAGAATCTTAAGGCTCGTAGGTTCAATACCACAGCCTCTAAAACAGTTAGCGCGAGCCTACGCTC
CCAACTGTAA
Found at i:68441383 original size:210 final size:209
Alignment explanation
Indices: 68440698--68441383 Score: 640
Period size: 210 Copynumber: 3.3 Consensus size: 209
68440688 GATAGGGCAT
* * * *
68440698 TCTTAAGGCTCACAGGTTCAATA-TCACAGCCTCTAAAATAGTTAGCACGAGCCTACACTCCCAA
1 TCTTAAGGCTCGCAGGTTCAATACT-ACAGCCTCCAAAATAGTTAGCGCGAGCCTACGCTCCCAA
* *
68440762 CTGTAATCTTAAGGCTCGTAGGTTCAATACC-CAAACCTTTAAAACAGTTAGCGCGAGCCTACGC
65 CTGTAATCTTAAGGCTCGTAGGTTCAATACCAC-AACCTTTAAAACAATTAGCGTGAGCCTACGC
* * * * * **
68440826 TCCCAACTAT-AATCTTAAGGCTTGCAAGTTCAATACCACAACCTCCAAAATAGTTAGCGTAAGC
129 TCCCAA-TTTGAATCTTAAGGCTCGCAGGTTCAATAACGCAACCTCCAAAATAGTTAGCGCGAGC
* * **
68440890 CTACACTCCTAGCTCTAA
193 TTACGCTCC-AGCTAGAA
* * * ** * *
68440908 TATTAAGGCTCGTAGGTTCAATACCACAGCCTCCAAAATAGTTAATGTGAGCCTACGCTCCCATC
1 TCTTAAGGCTCGCAGGTTCAATACTACAGCCTCCAAAATAGTTAGCGCGAGCCTACGCTCCCAAC
* * * ** ** * *
68440973 TGTAATCTTAAGGTTCGTAGGCTCAATACAACAACCTCCAAAGTAATTACCGTGAGCCTATGCTC
66 TGTAATCTTAAGGCTCGTAGGTTCAATACCACAACCTTTAAAACAATTAGCGTGAGCCTACGCTC
* * * ** * *
68441038 CCAACTAGAATCTTAAGGCTCGTAGGTTCAATATTGTAACCTCTAAAATAGTTAGCGCGAGCTTA
131 CCAATTTGAATCTTAAGGCTCGCAGGTTCAATAACGCAACCTCCAAAATAGTTAGCGCGAGCTTA
* ** *
68441103 TGCTCCCAAATGGAA
196 CGCT-CCAGCTAGAA
* * * * * * * * *
68441118 TCTTAAGGTTTGCAAGTTCAGTACTGCATCCTCTAAAAGAGTTAGCGTGAGCCTACGCTCCCAAC
1 TCTTAAGGCTCGCAGGTTCAATACTACAGCCTCCAAAATAGTTAGCGCGAGCCTACGCTCCCAAC
** ** * * * * * *
68441183 TGGGATCTTTTGGGTCGTAGGTTCAATACCACAGCCTTTAAAACAATTAGCATAAGCTTACACTC
66 TGTAATCTTAAGGCTCGTAGGTTCAATACCACAACCTTTAAAACAATTAGCGTGAGCCTACGCTC
* * * * *
68441248 CCAGTTTGAATCCTAAGTCTCGCAGGTTCAATAACGCAGCCTCCAAAATAGTTAACGCGAGCTTA
131 CCAATTTGAATCTTAAGGCTCGCAGGTTCAATAACGCAACCTCCAAAATAGTTAGCGCGAGCTTA
68441313 CGCTCTCAGCTAGAA
196 CGCTC-CAGCTAGAA
* * * * *
68441328 TCTTAAGGCTCGTAGGTTCAATACTGCAGCCTCCAAAACAGTTAGGGCAAGCCTAC
1 TCTTAAGGCTCGCAGGTTCAATACTACAGCCTCCAAAATAGTTAGCGCGAGCCTAC
68441384 TGATACGTGA
Statistics
Matches: 370, Mismatches: 101, Indels: 10
0.77 0.21 0.02
Matches are distributed among these distances:
209 1 0.00
210 366 0.99
211 3 0.01
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (209 bp):
TCTTAAGGCTCGCAGGTTCAATACTACAGCCTCCAAAATAGTTAGCGCGAGCCTACGCTCCCAAC
TGTAATCTTAAGGCTCGTAGGTTCAATACCACAACCTTTAAAACAATTAGCGTGAGCCTACGCTC
CCAATTTGAATCTTAAGGCTCGCAGGTTCAATAACGCAACCTCCAAAATAGTTAGCGCGAGCTTA
CGCTCCAGCTAGAA
Found at i:68442169 original size:54 final size:54
Alignment explanation
Indices: 68442105--68442215 Score: 222
Period size: 54 Copynumber: 2.1 Consensus size: 54
68442095 GTTTTAGGTT
68442105 TCATTCCCCTTAGGTATTTAAGGGATTTAGTTCATAACTAAAAAGGAAAACATC
1 TCATTCCCCTTAGGTATTTAAGGGATTTAGTTCATAACTAAAAAGGAAAACATC
68442159 TCATTCCCCTTAGGTATTTAAGGGATTTAGTTCATAACTAAAAAGGAAAACATC
1 TCATTCCCCTTAGGTATTTAAGGGATTTAGTTCATAACTAAAAAGGAAAACATC
68442213 TCA
1 TCA
68442216 GAAGAATAAT
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 57 1.00
ACGTcount: A:0.37, C:0.17, G:0.14, T:0.32
Consensus pattern (54 bp):
TCATTCCCCTTAGGTATTTAAGGGATTTAGTTCATAACTAAAAAGGAAAACATC
Found at i:68444577 original size:12 final size:11
Alignment explanation
Indices: 68444487--68444592 Score: 52
Period size: 12 Copynumber: 9.1 Consensus size: 11
68444477 AATAAAAATT
68444487 ATAAAAACTAAA
1 ATAAAAA-TAAA
*
68444499 ATTAAAATAATA
1 ATAAAAATAA-A
*
68444511 ATAATAAT-AA
1 ATAAAAATAAA
** *
68444521 AGGAAAATGAA
1 ATAAAAATAAA
* *
68444532 ATAAAAATTAC
1 ATAAAAATAAA
* *
68444543 TTAAATAAGATAA
1 ATAAA-AATA-AA
*
68444556 ATAAAGATAAA
1 ATAAAAATAAA
68444567 AGTAAAAATAATA
1 A-TAAAAATAA-A
68444580 ATAATAAATAAA
1 ATAA-AAATAAA
68444592 A
1 A
68444593 AGTTTTTAAA
Statistics
Matches: 69, Mismatches: 18, Indels: 14
0.68 0.18 0.14
Matches are distributed among these distances:
10 6 0.09
11 20 0.29
12 30 0.43
13 13 0.19
ACGTcount: A:0.69, C:0.02, G:0.06, T:0.24
Consensus pattern (11 bp):
ATAAAAATAAA
Found at i:68451183 original size:70 final size:70
Alignment explanation
Indices: 68451025--68451193 Score: 169
Period size: 70 Copynumber: 2.4 Consensus size: 70
68451015 CGTCTTATCA
* * * * * * *
68451025 CCTACGCTCCCAACTGGAATCTTAAGGCTCACAGGTTCAATACCACAACCTCCAAAATAGTTAGC
1 CCTACACTCCCAGCTAGAATCTTAAGGCTCACAAGTTCAAAACCACAACCGCCAAAACAGTTAGC
*
68451090 ATGAG
66 ACGAG
* * * * *
68451095 CCTACGC-CCTCAGTTAGAATCTTAGGGCTCACAAGTTCAAAACCACAGCCGCGAAAACAGTTAG
1 CCTACACTCC-CAGCTAGAATCTTAAGGCTCACAAGTTCAAAACCACAACCGCCAAAACAGTTAG
*
68451159 CGCGAG
65 CACGAG
** *
68451165 TTTACACTCCCAGCTAGAATCTAAAGGCT
1 CCTACACTCCCAGCTAGAATCTTAAGGCT
68451194 TATTGGTTTA
Statistics
Matches: 79, Mismatches: 18, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
69 2 0.03
70 75 0.95
71 2 0.03
ACGTcount: A:0.32, C:0.30, G:0.18, T:0.21
Consensus pattern (70 bp):
CCTACACTCCCAGCTAGAATCTTAAGGCTCACAAGTTCAAAACCACAACCGCCAAAACAGTTAGC
ACGAG
Found at i:68457073 original size:21 final size:21
Alignment explanation
Indices: 68457035--68457078 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
68457025 TTGTCTGTTC
* *
68457035 TTTCTTTCTTTTTCTATTTTA
1 TTTCTTTATTTTTCTATTATA
68457056 TTTCTTTATTCTTT-TATTATA
1 TTTCTTTATT-TTTCTATTATA
68457077 TT
1 TT
68457079 ATTATATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 17 0.85
22 3 0.15
ACGTcount: A:0.14, C:0.11, G:0.00, T:0.75
Consensus pattern (21 bp):
TTTCTTTATTTTTCTATTATA
Found at i:68457197 original size:24 final size:22
Alignment explanation
Indices: 68457135--68457192 Score: 98
Period size: 22 Copynumber: 2.6 Consensus size: 22
68457125 GTAAACATAT
* *
68457135 ATTTATACTACACATGTAATTA
1 ATTTTTACCACACATGTAATTA
68457157 ATTTTTACCACACATGTAATTA
1 ATTTTTACCACACATGTAATTA
68457179 ATTTTTACCACACA
1 ATTTTTACCACACA
68457193 CATGTCACCT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.38, C:0.19, G:0.03, T:0.40
Consensus pattern (22 bp):
ATTTTTACCACACATGTAATTA
Found at i:68457321 original size:19 final size:17
Alignment explanation
Indices: 68457297--68457339 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 17
68457287 CTAAATTAAC
68457297 CTTAATTAAGCAAAATTTA
1 CTTAATTAA--AAAATTTA
68457316 CTTAATT--AAAATTTA
1 CTTAATTAAAAAATTTA
68457331 CTTAATTAA
1 CTTAATTAA
68457340 TATTTAATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
15 15 0.68
19 7 0.32
ACGTcount: A:0.47, C:0.09, G:0.02, T:0.42
Consensus pattern (17 bp):
CTTAATTAAAAAATTTA
Found at i:68457326 original size:15 final size:15
Alignment explanation
Indices: 68457308--68457350 Score: 68
Period size: 15 Copynumber: 2.9 Consensus size: 15
68457298 TTAATTAAGC
68457308 AAAATTTACTTAATT
1 AAAATTTACTTAATT
68457323 AAAATTTACTTAATT
1 AAAATTTACTTAATT
* *
68457338 AATATTTAATTAA
1 AAAATTTACTTAA
68457351 CCTCTCACTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.47
Consensus pattern (15 bp):
AAAATTTACTTAATT
Found at i:68459000 original size:27 final size:28
Alignment explanation
Indices: 68458970--68459039 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
68458960 ATAATAAGTC
*
68458970 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
68458997 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
68459025 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
68459040 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:68466625 original size:16 final size:16
Alignment explanation
Indices: 68466604--68466639 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
68466594 AAACAAAGAC
68466604 TTAATTTAATTTAGTG
1 TTAATTTAATTTAGTG
*
68466620 TTAATTTAGTTTAGTG
1 TTAATTTAATTTAGTG
68466636 TTAA
1 TTAA
68466640 AACCCACACC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.56
Consensus pattern (16 bp):
TTAATTTAATTTAGTG
Found at i:68473196 original size:2 final size:2
Alignment explanation
Indices: 68473189--68473227 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
68473179 TTCTGCTACT
68473189 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
68473228 CTGATATTTG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:68473545 original size:6 final size:6
Alignment explanation
Indices: 68473526--68473787 Score: 488
Period size: 6 Copynumber: 43.7 Consensus size: 6
68473516 ATTTGTTATT
* * * *
68473526 TGTATC TATATT TGTATT TGTATT TGTATC TGTATC TGTATC TGTATC
1 TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC
68473574 TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC
1 TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC
68473622 TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC
1 TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC
68473670 TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC
1 TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC
68473718 TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC
1 TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC
68473766 TGTATC TGTATC TGTATC TGTA
1 TGTATC TGTATC TGTATC TGTA
68473788 AAGGACTTTA
Statistics
Matches: 252, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
6 252 1.00
ACGTcount: A:0.17, C:0.15, G:0.16, T:0.51
Consensus pattern (6 bp):
TGTATC
Found at i:68476525 original size:31 final size:28
Alignment explanation
Indices: 68476471--68476533 Score: 90
Period size: 31 Copynumber: 2.1 Consensus size: 28
68476461 AAATTTAGTC
*
68476471 ATAATTTTTTATTTTATTTAATATTAAT
1 ATAATTTTTTATTTAATTTAATATTAAT
68476499 ATAATTATATTTATTTAATATTAATATTAAT
1 ATAATT-T-TTTATTTAAT-TTAATATTAAT
68476530 ATAA
1 ATAA
68476534 AAATGTAAAC
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
28 6 0.19
29 1 0.03
30 9 0.29
31 15 0.48
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (28 bp):
ATAATTTTTTATTTAATTTAATATTAAT
Found at i:68476532 original size:25 final size:25
Alignment explanation
Indices: 68476479--68476525 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
68476469 TCATAATTTT
68476479 TTAT-TTTATTTAATATTAATATAA
1 TTATATTTATTTAATATTAATATAA
68476503 TTATATTTATTTAATATTAATAT
1 TTATATTTATTTAATATTAATAT
68476526 TAATATAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 4 0.18
25 18 0.82
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (25 bp):
TTATATTTATTTAATATTAATATAA
Found at i:68477117 original size:30 final size:28
Alignment explanation
Indices: 68477083--68477138 Score: 94
Period size: 30 Copynumber: 1.9 Consensus size: 28
68477073 TTTATGTAAG
68477083 AATAAAAATATTTCAAATACCTTTTTTTTA
1 AATAAAAATATTTCAAATA--TTTTTTTTA
68477113 AATAAAAATATTTCAAATATTTTTTT
1 AATAAAAATATTTCAAATATTTTTTT
68477139 AATTGTTTAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
28 7 0.27
30 19 0.73
ACGTcount: A:0.45, C:0.07, G:0.00, T:0.48
Consensus pattern (28 bp):
AATAAAAATATTTCAAATATTTTTTTTA
Found at i:68487426 original size:6 final size:6
Alignment explanation
Indices: 68487415--68487444 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
68487405 AGGGGAAATG
68487415 AATAAA AATAAA AATAAA AATAAA AATAAA
1 AATAAA AATAAA AATAAA AATAAA AATAAA
68487445 TGATATTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (6 bp):
AATAAA
Found at i:68491613 original size:46 final size:46
Alignment explanation
Indices: 68491547--68491718 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
68491537 TGGTTGAGCA
*
68491547 TCCGAACT-GTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
68491592 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
68491639 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
68491685 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
68491719 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 14, Indels: 15
0.78 0.10 0.11
Matches are distributed among these distances:
43 6 0.06
45 11 0.10
46 51 0.49
47 29 0.28
48 3 0.03
50 5 0.05
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:68491980 original size:19 final size:20
Alignment explanation
Indices: 68491943--68491980 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
68491933 ATAAGGTGGT
68491943 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
68491963 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
68491981 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:68493146 original size:16 final size:16
Alignment explanation
Indices: 68493095--68493148 Score: 63
Period size: 16 Copynumber: 3.4 Consensus size: 16
68493085 TTTGGTTTGT
*
68493095 TGTAATGGAATAGACC
1 TGTAATGGAATAGAAC
* * *
68493111 TGTAGTAGAATAGAAT
1 TGTAATGGAATAGAAC
*
68493127 TGTAATGGAATAGAGC
1 TGTAATGGAATAGAAC
68493143 TGTAAT
1 TGTAAT
68493149 CAATAATTCA
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.39, C:0.06, G:0.26, T:0.30
Consensus pattern (16 bp):
TGTAATGGAATAGAAC
Found at i:68496794 original size:28 final size:27
Alignment explanation
Indices: 68496731--68496800 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
68496721 ATAGTGAGTC
68496731 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
68496758 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
68496786 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
68496801 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:68504785 original size:27 final size:28
Alignment explanation
Indices: 68504754--68504823 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
68504744 TAGTGAGTCC
68504754 CGCACACTTAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
68504781 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
68504809 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
68504824 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:68507082 original size:680 final size:675
Alignment explanation
Indices: 68505787--68507142 Score: 2642
Period size: 680 Copynumber: 2.0 Consensus size: 675
68505777 TCATATTTAA
68505787 CATGCAATGGCATTAACACAAAATCCACCTTGGCCAAATACCATCCCCATGATATAACAAAGATT
1 CATGCAATGGCATTAACACAAAATCCACCTTGGCCAAATACCATCCCCATGATATAACAAAGATT
68505852 TGAACCATGGGCTAATAAGAACATCAAGCTAGCAACTAAAAATGCATGAATCTCATGGCACAACC
66 TGAACCATGGGCTAATAAGAACATCAAGCTAGCAACTAAAAATGCATGAATCTCATGGCACAACC
68505917 TCAAACATACCTTAATCTTGATGCAAGTATAGCCAAATCTCTTCCTAATCCCCTTCCAAACCAAA
131 TCAAACATACCTTAATCTTGATGCAAGTATAGCCAAATCTCTTCCTAATCCCCTTCCAAACCAAA
68505982 CATGAAGCAAAAATTCCTTCCTTCCTCTTTGGTATTTTCGGTCAAGAGAGAATGAAATGGATGAG
196 CATGAAGCAAAAATTCCTTCCTTCCTCTTTGGTATTTTCGGTCAAGAGAGAATGAAATGGATGAG
68506047 CAAAATTTTTTTCTTTTCTTTTCTTCAATGCACGGCAATGGGGGGTTCACTCACACATTTTTTTT
261 CAAAATTTTTTTCTTTTCTTTTCTTCAATGCACGGCAATGGGGGGTTCACTCACACATTTTTTTT
*
68506112 TCTTTTTTATTACCCATACTTATTTGTTTATTGTTTTCCCTAATGCACCAACAAAACATGTTTCA
326 TCTTCTTTATTACCCATACTTATTTGTTTATTGTTTTCCCTAATGCACCAACAAAACATGTTTCA
68506177 TGACATGTTTAGCCCATACTCCCTTGTCATGGCCGGCCACCTCCTATAAAAAGAGGGATATTTGA
391 TGACATGTTTAGCCCATACTCCCTTGTCATGGCCGGCCACCTCCTATAAAAAGAGGGATATTTGA
68506242 CATGCAAGGCCATTGTTTTGCATGCATGCTTTAATTAGTCATCACACATTTCCCCATCATACTTT
456 CATGCAAGGCCATTGTTTTGCATGCATGCTTTAATTAGTCATCACACATTTCCCCATCATACTTT
68506307 CAAAGTTTTCTACTAGGTCCTTTCTAGTGAAATTCACATTTATAACTCTAAATCAAACATCAAAA
521 CAAAGTTTTCTACTAGGTCCTTTCTAGTGAAATTCACATTTATAACTCTAAATCAAACATCAAAA
68506372 ATGTCACACACGAATTAACACATATCATAAGCATCAAAATGAGCATTAAATTATTTTTATGCCTC
586 ATGTCACACACGAATTAACACATATCATAAGCATCAAAATGAGCATTAAATTATTTTTATGCCTC
68506437 GGTTTTGCGGTCCCGAAACCACATT
651 GGTTTTGCGGTCCCGAAACCACATT
68506462 CATGCAATGGCATTAACACAAAATCCACCTTGGCCAAATACCATCCCCATGATATAACAAAGATT
1 CATGCAATGGCATTAACACAAAATCCACCTTGGCCAAATACCATCCCCATGATATAACAAAGATT
68506527 TGAACCATGGGCTAATAAGAACATCAAGCTAGCAACTAAAAACATGCATGAATCTCATGGCACAA
66 TGAACCATGGGCTAATAAGAACATCAAGCTAGCAACT-AAAA-ATGCATGAATCTCATGGCACAA
68506592 CCTCAAACATACCTTAATCTTGATGCAAGTATAGCCAAATCTCTTCCTAATCCCCTTCCAAACCA
129 CCTCAAACATACCTTAATCTTGATGCAAGTATAGCCAAATCTCTTCCTAATCCCCTTCCAAACCA
68506657 AACATGAAGCAAAAATTCCTTCCTTCCTCTTTGGTATTTTCGGTCAAGAGAGAATGAAATGGATG
194 AACATGAAGCAAAAATTCCTTCCTTCCTCTTTGGTATTTTCGGTCAAGAGAGAATGAAATGGATG
68506722 AGCAAAATTTTTTTCTTTTCTTTTCTTCAATGCACGGCAATGGGGGGGTTCACTCACACACATTT
259 AGCAAAATTTTTTTCTTTTCTTTTCTTCAATGCACGGCAAT-GGGGGGTTCACT--CACACATTT
68506787 TTTTTT-TTCTTTATTACCCATACTTATTTGTTTATTGTTTCTCCCTAATGCACCAACAAAACAT
321 TTTTTTCTTCTTTATTACCCATACTTATTTGTTTATTGTTT-TCCCTAATGCACCAACAAAACAT
68506851 GTTTCATGACATGTTTAGCCCATACTCCCTTGTCATGGCCGGCCACCTCCTATAAAAAGAGGGAT
385 GTTTCATGACATGTTTAGCCCATACTCCCTTGTCATGGCCGGCCACCTCCTATAAAAAGAGGGAT
68506916 ATTTGACATGCAAGGCCATTGTTTTGCATGCATGCTTTAATTAGTCATCACACATTTCCCCATCA
450 ATTTGACATGCAAGGCCATTGTTTTGCATGCATGCTTTAATTAGTCATCACACATTTCCCCATCA
68506981 TACTTTCAAAGTTTTCTACTAGGTCCTTTCTAGTGAAATTCACATTTATAACTCTAAATCAAACA
515 TACTTTCAAAGTTTTCTACTAGGTCCTTTCTAGTGAAATTCACATTTATAACTCTAAATCAAACA
68507046 TCAAAAATGTCACACACGAATTAACACATATCATAAGCATCAAAATGAGCATTAAATTATTTTTA
580 TCAAAAATGTCACACACGAATTAACACATATCATAAGCATCAAAATGAGCATTAAATTATTTTTA
68507111 TGCCTCGGTTTTGCGGTCCCGAAACCACATT
645 TGCCTCGGTTTTGCGGTCCCGAAACCACATT
68507142 C
1 C
68507143 CGACTAGGGT
Statistics
Matches: 674, Mismatches: 1, Indels: 7
0.99 0.00 0.01
Matches are distributed among these distances:
675 102 0.15
676 4 0.01
677 193 0.29
678 12 0.02
679 33 0.05
680 330 0.49
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.32
Consensus pattern (675 bp):
CATGCAATGGCATTAACACAAAATCCACCTTGGCCAAATACCATCCCCATGATATAACAAAGATT
TGAACCATGGGCTAATAAGAACATCAAGCTAGCAACTAAAAATGCATGAATCTCATGGCACAACC
TCAAACATACCTTAATCTTGATGCAAGTATAGCCAAATCTCTTCCTAATCCCCTTCCAAACCAAA
CATGAAGCAAAAATTCCTTCCTTCCTCTTTGGTATTTTCGGTCAAGAGAGAATGAAATGGATGAG
CAAAATTTTTTTCTTTTCTTTTCTTCAATGCACGGCAATGGGGGGTTCACTCACACATTTTTTTT
TCTTCTTTATTACCCATACTTATTTGTTTATTGTTTTCCCTAATGCACCAACAAAACATGTTTCA
TGACATGTTTAGCCCATACTCCCTTGTCATGGCCGGCCACCTCCTATAAAAAGAGGGATATTTGA
CATGCAAGGCCATTGTTTTGCATGCATGCTTTAATTAGTCATCACACATTTCCCCATCATACTTT
CAAAGTTTTCTACTAGGTCCTTTCTAGTGAAATTCACATTTATAACTCTAAATCAAACATCAAAA
ATGTCACACACGAATTAACACATATCATAAGCATCAAAATGAGCATTAAATTATTTTTATGCCTC
GGTTTTGCGGTCCCGAAACCACATT
Found at i:68510058 original size:28 final size:27
Alignment explanation
Indices: 68509995--68510064 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
68509985 ATAGTGAGTC
68509995 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
68510022 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
68510050 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
68510065 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:68518087 original size:28 final size:27
Alignment explanation
Indices: 68518024--68518093 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
68518014 ATAGTGAGTC
68518024 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
68518051 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
68518079 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
68518094 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:68521673 original size:46 final size:47
Alignment explanation
Indices: 68521585--68521754 Score: 226
Period size: 46 Copynumber: 3.7 Consensus size: 47
68521575 GGGTAGGATA
68521585 CCGATGTCATGTCCCAGACATGGTCTTACACTGG-TTCATCTCGTA-G
1 CCGATGTCATGTCCCAGACATGGTCTTACACTGGCTTCATCTCG-AGG
*
68521631 CCGATG-CATGTCCCAGACAT-ATCTTACACTGGCTTACATCTCGAGG
1 CCGATGTCATGTCCCAGACATGGTCTTACACTGGCTT-CATCTCGAGG
* * * *
68521677 TCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATCTCAATG
1 CCGATGTCATGTCCCAGACATGGTCTTACACTGGCT-TCATCTCGAGG
68521723 CCGATGTCATGTCCCAGACATGGTCTTACACT
1 CCGATGTCATGTCCCAGACATGGTCTTACACT
68521755 AGCTCGCAAT
Statistics
Matches: 111, Mismatches: 7, Indels: 10
0.87 0.05 0.08
Matches are distributed among these distances:
44 11 0.10
45 17 0.15
46 58 0.52
47 15 0.14
48 10 0.09
ACGTcount: A:0.22, C:0.30, G:0.19, T:0.29
Consensus pattern (47 bp):
CCGATGTCATGTCCCAGACATGGTCTTACACTGGCTTCATCTCGAGG
Found at i:68523347 original size:14 final size:15
Alignment explanation
Indices: 68523330--68523358 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
68523320 GAGTATGGTA
68523330 AAATA-TTAAAAAAT
1 AAATATTTAAAAAAT
68523344 AAATATTTAAAAAAT
1 AAATATTTAAAAAAT
68523359 TACTAATAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 5 0.36
15 9 0.64
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (15 bp):
AAATATTTAAAAAAT
Found at i:68526167 original size:91 final size:91
Alignment explanation
Indices: 68526049--68526215 Score: 275
Period size: 91 Copynumber: 1.8 Consensus size: 91
68526039 CTTGAAAGGT
*
68526049 TTTAGTTACTAGAAAACAACTCACAAGCAAAGCTCTTAT-GTTCAAACTTGGATCATAAATACTC
1 TTTAGTTACTAGAAAACAACTCACAAGCAAAGCTCTTATCG-TCAAACTTGGACCATAAATACTC
68526113 ATTCCACTAGTTCCTTAGGGTTTAGGG
65 ATTCCACTAGTTCCTTAGGGTTTAGGG
* *
68526140 TTTAGTTACTAGAGAAA-AACTCACAAGCAAAGCTCTTATCGTGAAACTTGGACCCTAAATACTC
1 TTTAGTTACTAGA-AAACAACTCACAAGCAAAGCTCTTATCGTCAAACTTGGACCATAAATACTC
68526204 ATTCCACTAGTT
65 ATTCCACTAGTT
68526216 TCCTGCAGCC
Statistics
Matches: 71, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
91 67 0.94
92 4 0.06
ACGTcount: A:0.34, C:0.21, G:0.14, T:0.31
Consensus pattern (91 bp):
TTTAGTTACTAGAAAACAACTCACAAGCAAAGCTCTTATCGTCAAACTTGGACCATAAATACTCA
TTCCACTAGTTCCTTAGGGTTTAGGG
Found at i:68526831 original size:37 final size:37
Alignment explanation
Indices: 68526790--68526865 Score: 134
Period size: 37 Copynumber: 2.1 Consensus size: 37
68526780 AAGAAAAAAA
* *
68526790 GAAAGTGTAGAGATGGAAATGAAAGGAAGTTACCAGT
1 GAAAGCGTAGAGATGGAAAGGAAAGGAAGTTACCAGT
68526827 GAAAGCGTAGAGATGGAAAGGAAAGGAAGTTACCAGT
1 GAAAGCGTAGAGATGGAAAGGAAAGGAAGTTACCAGT
68526864 GA
1 GA
68526866 GACCGAAGGA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.43, C:0.07, G:0.34, T:0.16
Consensus pattern (37 bp):
GAAAGCGTAGAGATGGAAAGGAAAGGAAGTTACCAGT
Found at i:68529091 original size:13 final size:13
Alignment explanation
Indices: 68529067--68529102 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
68529057 TGGAAATTAG
*
68529067 AAATATTGAAATT
1 AAATATTAAAATT
*
68529080 AAATTTTAAAATT
1 AAATATTAAAATT
68529093 AAATATTAAA
1 AAATATTAAA
68529103 TTTCGTTTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (13 bp):
AAATATTAAAATT
Found at i:68530429 original size:19 final size:19
Alignment explanation
Indices: 68530379--68530422 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
68530369 ATTTTTCTCA
* *
68530379 AAAAAATAGGAAAAATTATC
1 AAAAAATA-TAAATATTATC
*
68530399 AAAAAATATAAATATTATT
1 AAAAAATATAAATATTATC
68530418 AAAAA
1 AAAAA
68530423 TTCTAAAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 13 0.62
20 8 0.38
ACGTcount: A:0.68, C:0.02, G:0.05, T:0.25
Consensus pattern (19 bp):
AAAAAATATAAATATTATC
Found at i:68530464 original size:28 final size:26
Alignment explanation
Indices: 68530431--68530487 Score: 78
Period size: 28 Copynumber: 2.1 Consensus size: 26
68530421 AATTCTAAAA
*
68530431 AAATTATAAAAATAATATTAAATCTAAT
1 AAATTATAAAAATAA-ATAAAAT-TAAT
*
68530459 AAATTATTAAAATAAATAAAATTAAT
1 AAATTATAAAAATAAATAAAATTAAT
68530485 AAA
1 AAA
68530488 ACATGTTTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 7 0.26
27 6 0.22
28 14 0.52
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (26 bp):
AAATTATAAAAATAAATAAAATTAAT
Found at i:68530471 original size:9 final size:9
Alignment explanation
Indices: 68530430--68530488 Score: 50
Period size: 9 Copynumber: 6.4 Consensus size: 9
68530420 AAATTCTAAA
68530430 AAAATT-AT
1 AAAATTAAT
*
68530438 AAAAATAAT
1 AAAATTAAT
68530447 ATTAAATCTAAT
1 A--AAAT-TAAT
*
68530459 -AAATTATT
1 AAAATTAAT
*
68530467 AAAATAAAT
1 AAAATTAAT
68530476 AAAATTAAT
1 AAAATTAAT
68530485 AAAA
1 AAAA
68530489 CATGTTTTAA
Statistics
Matches: 40, Mismatches: 6, Indels: 9
0.73 0.11 0.16
Matches are distributed among these distances:
8 8 0.20
9 25 0.62
11 3 0.08
12 4 0.10
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (9 bp):
AAAATTAAT
Found at i:68531171 original size:29 final size:29
Alignment explanation
Indices: 68531120--68531176 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
68531110 TTATTATTTT
* *
68531120 TTATAACTTTGTTATAATATTTATAAGTC
1 TTATAAATTTGTTATAATATTTACAAGTC
*
68531149 TTATAAATTTTTTATAAGT-TTTACAAGT
1 TTATAAATTTGTTATAA-TATTTACAAGT
68531177 TCATATAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 23 0.96
30 1 0.04
ACGTcount: A:0.35, C:0.05, G:0.07, T:0.53
Consensus pattern (29 bp):
TTATAAATTTGTTATAATATTTACAAGTC
Found at i:68531204 original size:10 final size:9
Alignment explanation
Indices: 68531185--68531214 Score: 51
Period size: 9 Copynumber: 3.2 Consensus size: 9
68531175 GTTCATATAA
68531185 TTTTAATAT
1 TTTTAATAT
68531194 TTTTAAATAT
1 TTTT-AATAT
68531204 TTTTAATAT
1 TTTTAATAT
68531213 TT
1 TT
68531215 AATAAAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 11 0.55
10 9 0.45
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (9 bp):
TTTTAATAT
Found at i:68531724 original size:24 final size:24
Alignment explanation
Indices: 68531673--68531727 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 24
68531663 CACTCAAACA
*
68531673 AATATAATTTCTCCCTTTCTATGCT
1 AATAT-ATTTCTCCCTTTCGATGCT
* * *
68531698 AATATATTTCTCTCTTTCGGTGTT
1 AATATATTTCTCCCTTTCGATGCT
68531722 AATATA
1 AATATA
68531728 ATTTAGAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
24 21 0.81
25 5 0.19
ACGTcount: A:0.25, C:0.18, G:0.07, T:0.49
Consensus pattern (24 bp):
AATATATTTCTCCCTTTCGATGCT
Found at i:68532826 original size:29 final size:28
Alignment explanation
Indices: 68532766--68532869 Score: 97
Period size: 28 Copynumber: 3.7 Consensus size: 28
68532756 GTGTCCCCTA
* * *
68532766 TTTTCAGATTTTACAATTTTGCACTTA-T
1 TTTTTAGATTTTATAATTTT-CCCTTATT
68532794 TTTTTAGATTTTATAATTTTCCCTTATT
1 TTTTTAGATTTTATAATTTTCCCTTATT
* **
68532822 TTTTTAAATTTTAT-ATTTTCACCCCAATT
1 TTTTTAGATTTTATAATTTT--CCCTTATT
*
68532851 TTTTTAGA-TTTATAGTTTT
1 TTTTTAGATTTTATAATTTT
68532870 GTCATTTACT
Statistics
Matches: 64, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
27 10 0.16
28 37 0.58
29 17 0.27
ACGTcount: A:0.24, C:0.12, G:0.05, T:0.60
Consensus pattern (28 bp):
TTTTTAGATTTTATAATTTTCCCTTATT
Found at i:68537099 original size:43 final size:43
Alignment explanation
Indices: 68537038--68537126 Score: 169
Period size: 43 Copynumber: 2.1 Consensus size: 43
68537028 ATACGCCCAC
68537038 GTGACTAGCCCGTGTATCCTTCGAAGTGGCCTCACACACCCGT
1 GTGACTAGCCCGTGTATCCTTCGAAGTGGCCTCACACACCCGT
*
68537081 GTGACTAGCCCGTGTATCCTTCGAAGTGGCCTCACACGCCCGT
1 GTGACTAGCCCGTGTATCCTTCGAAGTGGCCTCACACACCCGT
68537124 GTG
1 GTG
68537127 CCAGGCCGTG
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.17, C:0.34, G:0.26, T:0.24
Consensus pattern (43 bp):
GTGACTAGCCCGTGTATCCTTCGAAGTGGCCTCACACACCCGT
Found at i:68539073 original size:50 final size:50
Alignment explanation
Indices: 68538998--68539099 Score: 195
Period size: 50 Copynumber: 2.0 Consensus size: 50
68538988 TCGGGGTCGA
68538998 GTCTGTATACCTAATGACTCTGATTTAAGGTAGTCTATTCTACGAAAAGC
1 GTCTGTATACCTAATGACTCTGATTTAAGGTAGTCTATTCTACGAAAAGC
*
68539048 GTCTGTATACCTAATGACTCTGATTTAAGGTAGTCTATTCTACGAGAAGC
1 GTCTGTATACCTAATGACTCTGATTTAAGGTAGTCTATTCTACGAAAAGC
68539098 GT
1 GT
68539100 ATAGTAGCCC
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 51 1.00
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.34
Consensus pattern (50 bp):
GTCTGTATACCTAATGACTCTGATTTAAGGTAGTCTATTCTACGAAAAGC
Found at i:68543884 original size:22 final size:21
Alignment explanation
Indices: 68543849--68543924 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
68543839 AAAAGGTATC
* *
68543849 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
68543870 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
68543893 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
68543912 TGC-AATCATATCT
1 TACAAATCATATCT
68543925 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:68543941 original size:35 final size:37
Alignment explanation
Indices: 68543878--68543975 Score: 150
Period size: 35 Copynumber: 2.7 Consensus size: 37
68543868 ATTACAAAAT
68543878 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
68543914 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
68543949 CATATCATATCTAAGATTGCATATCAT
1 CATATCATATCTAAGATTG-ATATCAT
68543976 TGAAGATTAT
Statistics
Matches: 57, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
35 22 0.39
36 19 0.33
37 10 0.18
38 6 0.11
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:68543983 original size:17 final size:19
Alignment explanation
Indices: 68543885--68543975 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
68543875 AATCATATCT
68543885 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
68543904 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
68543922 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
68543939 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
68543958 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
68543976 TGAAGATTAT
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.23
18 16 0.23
19 37 0.54
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:68544382 original size:45 final size:45
Alignment explanation
Indices: 68544327--68544598 Score: 284
Period size: 45 Copynumber: 6.1 Consensus size: 45
68544317 GGAAGGCGAT
* * *
68544327 ATCTGCTATCTTTGATCTGTTCCCCGTCTAATACAGAGACGCCAA
1 ATCTGTTATCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* *
68544372 ATCTGTTATCTTTGATCTGCTCCCCGTCTAAAATAGAGATGCCAA
1 ATCTGTTATCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* * * *
68544417 ATCTGCT-TCTTTAATCTACTCCTCG-CTAATACAGAGATGCCAA
1 ATCTGTTATCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* *
68544460 ATCTGTTATCTCTGATTTGCTCCCCGTCTAATACAGAGATGCCAA
1 ATCTGTTATCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* * * * * * * *
68544505 ATCTGTCATCTTGGATCTGCT--TCGATGTAACACATGA-AGGTCAG
1 ATCTGTTATCTTTGATCTGCTCCCCG-TCTAATACA-GAGATGCCAA
* *
68544549 ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
1 ATCTG-T-TATCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAA
68544596 ATC
1 ATC
68544599 ATCTTCGATA
Statistics
Matches: 182, Mismatches: 36, Indels: 16
0.78 0.15 0.07
Matches are distributed among these distances:
43 24 0.13
44 44 0.24
45 84 0.46
46 14 0.08
47 14 0.08
48 2 0.01
ACGTcount: A:0.25, C:0.26, G:0.16, T:0.32
Consensus pattern (45 bp):
ATCTGTTATCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAA
Found at i:68544459 original size:88 final size:90
Alignment explanation
Indices: 68544327--68544509 Score: 271
Period size: 88 Copynumber: 2.1 Consensus size: 90
68544317 GGAAGGCGAT
* ** *
68544327 ATCTGCTATCTTTGATCTGTTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTTTGATCTGC
1 ATCTGCTATCTTTAATCTACTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTCTGATCTGC
*
68544392 TCCCCGTCTAAAATAGAGATGCCAA
66 TCCCCGTCTAAAACAGAGATGCCAA
* * *
68544417 ATCTGCT-TCTTTAATCTACTCCTCG-CTAATACAGAGATGCCAAATCTGTTATCTCTGATTTGC
1 ATCTGCTATCTTTAATCTACTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTCTGATCTGC
*
68544480 TCCCCGTCTAATACAGAGATGCCAA
66 TCCCCGTCTAAAACAGAGATGCCAA
68544505 ATCTG
1 ATCTG
68544510 TCATCTTGGA
Statistics
Matches: 84, Mismatches: 9, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
88 63 0.75
89 14 0.17
90 7 0.08
ACGTcount: A:0.26, C:0.27, G:0.15, T:0.33
Consensus pattern (90 bp):
ATCTGCTATCTTTAATCTACTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTCTGATCTGC
TCCCCGTCTAAAACAGAGATGCCAA
Found at i:68544831 original size:78 final size:78
Alignment explanation
Indices: 68544541--68544806 Score: 428
Period size: 78 Copynumber: 3.4 Consensus size: 78
68544531 GTAACACATG
* *
68544541 AAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTCG
1 AAGGTCAGATCTGCTATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGG
*
68544606 ATATGCTTCAATA
66 ATCTGCTTCAATA
**
68544619 AAGGTTCA-ATCTATTATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTG
1 AAGG-TCAGATCTGCTATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTG
*
68544683 GATCTGCTTCAATG
65 GATCTGCTTCAATA
* *
68544697 AAGGTCAGATCTGCTGTGTCTTTGATCTGCTCCCCGTCTAATATAGAGATGCCAAATCATCTTGG
1 AAGGTCAGATCTGCTATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGG
68544762 ATCTGCTTCAATA
66 ATCTGCTTCAATA
68544775 AAGGTCAGATCTGCTATGTCTTCT-ATCTGCTC
1 AAGGTCAGATCTGCTATGTCTT-TGATCTGCTC
68544807 TCTGTCGAAT
Statistics
Matches: 173, Mismatches: 12, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
77 3 0.02
78 166 0.96
79 4 0.02
ACGTcount: A:0.25, C:0.24, G:0.18, T:0.33
Consensus pattern (78 bp):
AAGGTCAGATCTGCTATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGG
ATCTGCTTCAATA
Found at i:68545454 original size:175 final size:175
Alignment explanation
Indices: 68545231--68545724 Score: 730
Period size: 175 Copynumber: 2.8 Consensus size: 175
68545221 AAATCTGTTA
* * * *
68545231 TCTTCGATCTGCTCTCTGAC-AATACAAATACGCCAAATCATCTTAGATTTGCTTCAACGTAAAC
1 TCTTCGATCTGCTCTCTGCCGAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAAC
68545295 ACGTGAAAGCCAAATCAGCTATGTCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCATC
66 ACGTGAAAGCCAAATCAGCTATGTCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCATC
*
68545360 TTAGATTTGCTTCAACGTAAACACATGAAAGCCAAATCAGCTATG
131 TTAGATTTGCTTCAACGTAAACACATGAAAGCCAAATCAGCCATG
68545405 TCTTCGATCTGCTCTCTGCCGAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAAC
1 TCTTCGATCTGCTCTCTGCCGAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAAC
68545470 ACGTGAAAGCCAAATCAGCTATGTCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCATC
66 ACGTGAAAGCCAAATCAGCTATGTCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCATC
68545535 TTAGATTTGCTTCAACGTAAACACATGAAAGCCAAATCAGCCATG
131 TTAGATTTGCTTCAACGTAAACACATGAAAGCCAAATCAGCCATG
* * **
68545580 TCTTCGATCTGCTCTCTGCCGAATACAGAGATGCCAAATCAGTCATCTTCGATCTGCTCTCTGC-
1 TCTTCGATCTGCTCTCTGCCGAATACAGAGATGCC-AA--A-TCATCTTAGATTTGCT-TCAACG
* * * * * * *
68545644 CAATACA-GAG-ACGCCAAATCTG-T-TGTCTTCGATCTGCTCTCTGCCAATACAAAGATGCCAA
61 TAA-ACACGTGAAAGCCAAATCAGCTATGTCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAA
* *
68545705 ATCATCTTGGATCTGCTTCA
125 ATCATCTTAGATTTGCTTCA
68545725 GTATAAATAC
Statistics
Matches: 295, Mismatches: 18, Indels: 12
0.91 0.06 0.04
Matches are distributed among these distances:
174 19 0.06
175 185 0.63
176 55 0.19
177 1 0.00
178 11 0.04
179 18 0.06
180 6 0.02
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (175 bp):
TCTTCGATCTGCTCTCTGCCGAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAAC
ACGTGAAAGCCAAATCAGCTATGTCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCATC
TTAGATTTGCTTCAACGTAAACACATGAAAGCCAAATCAGCCATG
Found at i:68545470 original size:88 final size:87
Alignment explanation
Indices: 68545231--68545724 Score: 683
Period size: 87 Copynumber: 5.6 Consensus size: 87
68545221 AAATCTGTTA
* * *
68545231 TCTTCGATCTGCTCTCTGACAATACAAATACGCCAAATCATCTTAGATTTGCTTCAACGTAAACA
1 TCTTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACA
*
68545296 CGTGAAAGCCAAATCAGCTATG
66 CATGAAAGCCAAATCAGCTATG
*
68545318 TCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACA
1 TCTTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACA
68545383 CATGAAAGCCAAATCAGCTATG
66 CATGAAAGCCAAATCAGCTATG
*
68545405 TCTTCGATCTGCTCTCTGCCGAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAAC
1 TCTTCGATCTGCTCTCTGCC-AATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAAC
*
68545470 ACGTGAAAGCCAAATCAGCTATG
65 ACATGAAAGCCAAATCAGCTATG
*
68545493 TCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACA
1 TCTTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACA
*
68545558 CATGAAAGCCAAATCAGCCATG
66 CATGAAAGCCAAATCAGCTATG
* * * *
68545580 TCTTCGATCTGCTCTCTGCCGAATACAGAGATGCCAAATCAGTCATCTTCGATCTGCTCTC--TG
1 TCTTCGATCTGCTCTCTGCC-AATACAGAGACGCC-AA--A-TCATCTTAGATTTGCT-TCAACG
** * * *
68545643 CCAATACA-GAGACGCCAAATCTG-T-TG
60 TAAACACATGA-AAGCCAAATCAGCTATG
* * * *
68545669 TCTTCGATCTGCTCTCTGCCAATACAAAGATGCCAAATCATCTTGGATCTGCTTCA
1 TCTTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCATCTTAGATTTGCTTCA
68545725 GTATAAATAC
Statistics
Matches: 373, Mismatches: 25, Indels: 21
0.89 0.06 0.05
Matches are distributed among these distances:
83 2 0.01
84 15 0.04
85 1 0.00
87 186 0.50
88 110 0.29
89 24 0.06
90 2 0.01
91 17 0.05
92 14 0.04
93 2 0.01
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (87 bp):
TCTTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACA
CATGAAAGCCAAATCAGCTATG
Found at i:68545673 original size:44 final size:44
Alignment explanation
Indices: 68545303--68545708 Score: 236
Period size: 47 Copynumber: 9.2 Consensus size: 44
68545293 ACACGTGAAA
* *
68545303 GCCAAATCAGCTATGTCTTCGATCTGCTCCCTGCCAATACAGAGAC
1 GCCAAATCAG-T-TGTCTTCGATCTGCTCTCTGCCAATACAGAGAT
* * ** * * *
68545349 GCCAAATCA----TCTTAGATTTGCT-TCAACGTAA-ACACATGAAA
1 GCCAAATCAGTTGTCTTCGATCTGCTCTCTGC-CAATACAGA-G-AT
68545390 GCCAAATCAGCTATGTCTTCGATCTGCTCTCTGCCGAATACAGAGAT
1 GCCAAATCAG-T-TGTCTTCGATCTGCTCTCTGCC-AATACAGAGAT
* * ** * * *
68545437 GCCAAATCA----TCTTAGATTTGCT-TCAACGTAA-ACACGTGAAA
1 GCCAAATCAGTTGTCTTCGATCTGCTCTCTGC-CAATACA-GAG-AT
* *
68545478 GCCAAATCAGCTATGTCTTCGATCTGCTCCCTGCCAATACAGAGAC
1 GCCAAATCAG-T-TGTCTTCGATCTGCTCTCTGCCAATACAGAGAT
* * ** * * *
68545524 GCCAAATCA----TCTTAGATTTGCT-TCAACGTAA-ACACATGAAA
1 GCCAAATCAGTTGTCTTCGATCTGCTCTCTGC-CAATACAGA-G-AT
*
68545565 GCCAAATCAGCCATGTCTTCGATCTGCTCTCTGCCGAATACAGAGAT
1 GCCAAATCAG--TTGTCTTCGATCTGCTCTCTGCC-AATACAGAGAT
** *
68545612 GCCAAATCAGTCATCTTCGATCTGCTCTCTGCCAATACAGAGAC
1 GCCAAATCAGTTGTCTTCGATCTGCTCTCTGCCAATACAGAGAT
* *
68545656 GCCAAATCTGTTGTCTTCGATCTGCTCTCTGCCAATACAAAGAT
1 GCCAAATCAGTTGTCTTCGATCTGCTCTCTGCCAATACAGAGAT
68545700 GCCAAATCA
1 GCCAAATCA
68545709 TCTTGGATCT
Statistics
Matches: 270, Mismatches: 55, Indels: 72
0.68 0.14 0.18
Matches are distributed among these distances:
39 15 0.06
40 35 0.13
41 41 0.15
44 57 0.21
45 20 0.07
46 19 0.07
47 58 0.21
48 17 0.06
49 8 0.03
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (44 bp):
GCCAAATCAGTTGTCTTCGATCTGCTCTCTGCCAATACAGAGAT
Found at i:68546717 original size:6 final size:6
Alignment explanation
Indices: 68546706--68546765 Score: 77
Period size: 6 Copynumber: 9.5 Consensus size: 6
68546696 GCCTCTCCTT
68546706 TTTTTC TTTTTC TTTTTC TTTTTTC TTTTTTC TTTTTC TTTTTTTC TTTTTC
1 TTTTTC TTTTTC TTTTTC -TTTTTC -TTTTTC TTTTTC --TTTTTC TTTTTC
68546758 -TTTTC TTT
1 TTTTTC TTT
68546766 CCCCCCTTTT
Statistics
Matches: 50, Mismatches: 0, Indels: 8
0.86 0.00 0.14
Matches are distributed among these distances:
5 5 0.10
6 26 0.52
7 13 0.26
8 6 0.12
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTTC
Found at i:68546722 original size:14 final size:14
Alignment explanation
Indices: 68546703--68546766 Score: 96
Period size: 14 Copynumber: 4.6 Consensus size: 14
68546693 TTGGCCTCTC
68546703 CTTTTTTTCTTTTT
1 CTTTTTTTCTTTTT
*
68546717 CTTTTTCT-TTTTT
1 CTTTTTTTCTTTTT
68546730 C-TTTTTTCTTTTT
1 CTTTTTTTCTTTTT
68546743 CTTTTTTTCTTTTT
1 CTTTTTTTCTTTTT
68546757 CTTTTCTTTC
1 CTTTT-TTTC
68546767 CCCCCTTTTT
Statistics
Matches: 45, Mismatches: 2, Indels: 5
0.87 0.04 0.10
Matches are distributed among these distances:
12 5 0.11
13 12 0.27
14 24 0.53
15 4 0.09
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (14 bp):
CTTTTTTTCTTTTT
Found at i:68546726 original size:20 final size:20
Alignment explanation
Indices: 68546703--68546765 Score: 103
Period size: 20 Copynumber: 3.2 Consensus size: 20
68546693 TTGGCCTCTC
68546703 CTTTTTTTCTTTTTCTTTTT
1 CTTTTTTTCTTTTTCTTTTT
68546723 C-TTTTTTCTTTTTTCTTTTT
1 CTTTTTTTC-TTTTTCTTTTT
68546743 CTTTTTTTCTTTTTC-TTTT
1 CTTTTTTTCTTTTTCTTTTT
68546762 CTTT
1 CTTT
68546766 CCCCCCTTTT
Statistics
Matches: 41, Mismatches: 0, Indels: 5
0.89 0.00 0.11
Matches are distributed among these distances:
19 15 0.37
20 19 0.46
21 7 0.17
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (20 bp):
CTTTTTTTCTTTTTCTTTTT
Found at i:68552942 original size:23 final size:22
Alignment explanation
Indices: 68552899--68552956 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
68552889 AAAAGGTATC
* *
68552899 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
68552920 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
68552943 TGCATATCATATCT
1 TACAAATCATATCT
68552957 AAGATTGTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:68552959 original size:19 final size:19
Alignment explanation
Indices: 68552935--68553007 Score: 132
Period size: 19 Copynumber: 3.9 Consensus size: 19
68552925 AATCATATCT
68552935 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
68552954 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
68552971 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
68552990 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
68553008 TGATGATTAT
Statistics
Matches: 52, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
17 17 0.33
19 35 0.67
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:68552970 original size:22 final size:19
Alignment explanation
Indices: 68552926--68552973 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 19
68552916 AGATTACAAA
68552926 ATCATATCTTCTAAGATTG
1 ATCATATCTTCTAAGATTG
68552945 --CATATCATATCTAAGATTG
1 ATCATATC-T-TCTAAGATTG
68552964 TATCATATCT
1 -ATCATATCT
68552974 AAGATTGCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 8
0.75 0.00 0.25
Matches are distributed among these distances:
17 6 0.25
18 1 0.04
19 10 0.42
21 1 0.04
22 6 0.25
ACGTcount: A:0.33, C:0.17, G:0.08, T:0.42
Consensus pattern (19 bp):
ATCATATCTTCTAAGATTG
Found at i:68555319 original size:31 final size:32
Alignment explanation
Indices: 68555258--68555337 Score: 92
Period size: 31 Copynumber: 2.5 Consensus size: 32
68555248 GAAAACAAAA
* *
68555258 AAAAAAAGTAGTAAATATTTTACTAAAAGTTTT
1 AAAAAAAGTAGTAAA-ATATTACTAAAAGTTGT
* *
68555291 TAAAAAA-TAGTAAAATATTATTAAAAGTTGT
1 AAAAAAAGTAGTAAAATATTACTAAAAGTTGT
*
68555322 AAAAAAATTA-TAAAAT
1 AAAAAAAGTAGTAAAAT
68555338 TGAAAATTAC
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
31 26 0.63
32 9 0.22
33 6 0.15
ACGTcount: A:0.57, C:0.01, G:0.07, T:0.34
Consensus pattern (32 bp):
AAAAAAAGTAGTAAAATATTACTAAAAGTTGT
Found at i:68555382 original size:17 final size:18
Alignment explanation
Indices: 68555369--68555403 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
68555359 ATAAAATTTT
68555369 TAAAAATATTAAATATTA
1 TAAAAATATTAAATATTA
*
68555387 TAAAAA-ATTAAAAATTA
1 TAAAAATATTAAATATTA
68555404 CTACTCTTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (18 bp):
TAAAAATATTAAATATTA
Found at i:68555393 original size:39 final size:39
Alignment explanation
Indices: 68555281--68555396 Score: 94
Period size: 37 Copynumber: 2.9 Consensus size: 39
68555271 AATATTTTAC
* * *
68555281 TAAAAGTTTTTAAAAAATAGTAAAATATTATTAAAAGTTGTA
1 TAAAA-TTTTT-AAAAATA-TAAAATATTATAAAAAATTATA
* * * * *
68555323 AAAAAATTAT-AAAAT-TGAAA-ATTACAGAAAAATTATA
1 TAAAATTTTTAAAAATATAAAATATTATA-AAAAATTATA
*
68555360 TAAAATTTTTAAAAATATTAAATATTATAAAAAATTA
1 TAAAATTTTTAAAAATATAAAATATTATAAAAAATTA
68555397 AAAATTACTA
Statistics
Matches: 57, Mismatches: 13, Indels: 11
0.70 0.16 0.14
Matches are distributed among these distances:
36 4 0.07
37 19 0.33
38 5 0.09
39 17 0.30
40 5 0.09
41 3 0.05
42 4 0.07
ACGTcount: A:0.59, C:0.01, G:0.05, T:0.35
Consensus pattern (39 bp):
TAAAATTTTTAAAAATATAAAATATTATAAAAAATTATA
Done.