Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 220 of 318
Found at i:69219352 original size:56 final size:56
Alignment explanation
Indices: 69219286--69219478 Score: 287
Period size: 56 Copynumber: 3.4 Consensus size: 56
69219276 GACCATGGGA
*
69219286 TCGATATATGTGTGCGAGTAAGACCACACTTTATACGTTGGCATCGATATGTGACT
1 TCGATATATGTGTGCGAGTAAGACCACATTTTATACGTTGGCATCGATATGTGACT
* * *
69219342 TCGATATATGTGCGCGAGTAAGACCGCATTTTATACGTTGGCATCAATATGTGACT
1 TCGATATATGTGTGCGAGTAAGACCACATTTTATACGTTGGCATCGATATGTGACT
* * * * * *
69219398 TCTATAAATGTGTGCGAGTAAGACGACGTTTTATACATTAGCATCGATATGTGACT
1 TCGATATATGTGTGCGAGTAAGACCACATTTTATACGTTGGCATCGATATGTGACT
*
69219454 CCGATATATGTGTGCGAGTAAGACC
1 TCGATATATGTGTGCGAGTAAGACC
69219479 CTGTCTGGGA
Statistics
Matches: 120, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
56 120 1.00
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (56 bp):
TCGATATATGTGTGCGAGTAAGACCACATTTTATACGTTGGCATCGATATGTGACT
Found at i:69219498 original size:56 final size:55
Alignment explanation
Indices: 69219286--69219507 Score: 227
Period size: 56 Copynumber: 4.0 Consensus size: 55
69219276 GACCATGGGA
**
69219286 TCGATATATGTGTGCGAGTAAGACCACACTTTATAC-GTTGGCATCGATATGTGACT
1 TCGATATATGTGTGCGAGTAAGACC-CTGTTTATACAG-TGGCATCGATATGTGACT
* *
69219342 TCGATATATGTGCGCGAGTAAGACCGCAT-TTTATAC-GTTGGCATCAATATGTGACT
1 TCGATATATGTGTGCGAGTAAGACC-C-TGTTTATACAG-TGGCATCGATATGTGACT
* * * * *
69219398 TCTATAAATGTGTGCGAGTAAGACGAC-GTTTTATACATTAGCATCGATATGTGACT
1 TCGATATATGTGTGCGAGTAAGAC-CCTG-TTTATACAGTGGCATCGATATGTGACT
* ***
69219454 CCGATATATGTGTGCGAGTAAGACCCTGTCTGGGACAGTGGCATCGATATGTGA
1 TCGATATATGTGTGCGAGTAAGACCCTGT-TTATACAGTGGCATCGATATGTGA
69219508 TTACATGTAA
Statistics
Matches: 139, Mismatches: 20, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
55 2 0.01
56 137 0.99
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (55 bp):
TCGATATATGTGTGCGAGTAAGACCCTGTTTATACAGTGGCATCGATATGTGACT
Found at i:69221190 original size:13 final size:13
Alignment explanation
Indices: 69221172--69221196 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
69221162 AGGTTCAAAG
69221172 ATAAATTGATATT
1 ATAAATTGATATT
69221185 ATAAATTGATAT
1 ATAAATTGATAT
69221197 CTCTTTCCAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (13 bp):
ATAAATTGATATT
Found at i:69222971 original size:2 final size:2
Alignment explanation
Indices: 69222966--69222995 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
69222956 GTTTTTTTTC
69222966 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
69222996 CGCTCTGGGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:69226960 original size:12 final size:12
Alignment explanation
Indices: 69226943--69226985 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
69226933 ATAATTCTAA
*
69226943 AAAAATAAAAAT
1 AAAAATAATAAT
**
69226955 AAAAATAATGTT
1 AAAAATAATAAT
*
69226967 AAAAATTATAAT
1 AAAAATAATAAT
69226979 AAAAATA
1 AAAAATA
69226986 TTTAAAAAAA
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.72, C:0.00, G:0.02, T:0.26
Consensus pattern (12 bp):
AAAAATAATAAT
Found at i:69226970 original size:24 final size:22
Alignment explanation
Indices: 69226943--69226993 Score: 66
Period size: 24 Copynumber: 2.2 Consensus size: 22
69226933 ATAATTCTAA
69226943 AAAAATAAAAATAAAAATAATGTT
1 AAAAATAAAAATAAAAAT-AT-TT
* *
69226967 AAAAATTATAATAAAAATATTT
1 AAAAATAAAAATAAAAATATTT
69226989 AAAAA
1 AAAAA
69226994 AAACGAATCT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 7 0.28
23 2 0.08
24 16 0.64
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (22 bp):
AAAAATAAAAATAAAAATATTT
Found at i:69228327 original size:20 final size:20
Alignment explanation
Indices: 69228299--69228338 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
69228289 ATTTAATTAA
69228299 AAAAATTTAAGATTTTTTAT
1 AAAAATTTAAGATTTTTTAT
* **
69228319 AAAATTTTAATTTTTTTTAT
1 AAAAATTTAAGATTTTTTAT
69228339 GTATATATTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (20 bp):
AAAAATTTAAGATTTTTTAT
Found at i:69228773 original size:2 final size:2
Alignment explanation
Indices: 69228766--69228800 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
69228756 AGGAGAAAAG
*
69228766 AT AT AT AT AT AT AT AT AT AT AT AA AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
69228801 TTTGTTGATT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:69229297 original size:28 final size:28
Alignment explanation
Indices: 69229257--69229319 Score: 99
Period size: 28 Copynumber: 2.2 Consensus size: 28
69229247 GTCATTATCA
69229257 ACCCCATAAGTTATAAAACTCTTCCTAT
1 ACCCCATAAGTTATAAAACTCTTCCTAT
* * *
69229285 ACCCCATAAGTTATGAGACTTTTCCTAT
1 ACCCCATAAGTTATAAAACTCTTCCTAT
69229313 ACCCCAT
1 ACCCCAT
69229320 TAATATGGGA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.32, C:0.30, G:0.06, T:0.32
Consensus pattern (28 bp):
ACCCCATAAGTTATAAAACTCTTCCTAT
Found at i:69234612 original size:28 final size:28
Alignment explanation
Indices: 69234571--69234633 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 28
69234561 GTCATTATCA
*
69234571 ACCCCATAAGTTATAAAACTCTTCCTAT
1 ACCCCATAAATTATAAAACTCTTCCTAT
* * *
69234599 ACCCCATAAATTATGAGACTTTTCCTAT
1 ACCCCATAAATTATAAAACTCTTCCTAT
69234627 ACCCCAT
1 ACCCCAT
69234634 TAATATGGGA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.33, C:0.30, G:0.05, T:0.32
Consensus pattern (28 bp):
ACCCCATAAATTATAAAACTCTTCCTAT
Found at i:69237784 original size:79 final size:79
Alignment explanation
Indices: 69237640--69237858 Score: 257
Period size: 79 Copynumber: 2.7 Consensus size: 79
69237630 GAATCACATA
* * * * *
69237640 CCTTCGGAATTTAACCGGATATAGCTACTCGCTCAAATGCCTTCGGGACATAGCCCGG-TTATAG
1 CCTTCGGGACTTAACCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATATAG
69237704 TAACTCGCACAAATG
65 TAACTCGCACAAATG
* *
69237719 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGGAAT-TA
1 CCTTCGGGACTTAA-CCGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATATA
69237782 GTAACTCGCACAAATG
64 GTAACTCGCACAAATG
* * *
69237798 CCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCACAAAAGCCTTCGGGACTTAGCCCGGA
1 CCTTCGGGA-CTTA-ACCGGATATAGT-AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
69237859 TATCATTCGA
Statistics
Matches: 120, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
78 3 0.03
79 61 0.51
80 45 0.38
81 11 0.09
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CCTTCGGGACTTAACCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATATAGT
AACTCGCACAAATG
Found at i:69237787 original size:39 final size:41
Alignment explanation
Indices: 69237654--69237858 Score: 237
Period size: 40 Copynumber: 5.1 Consensus size: 41
69237644 CGGAATTTAA
* *
69237654 CCGG-ATATAGCT-ACTCGCTCAAATGCCTTCGGGACATAGC
1 CCGGAATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
69237694 CCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
69237734 CCGG-ATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
69237773 CCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
69237813 CCGG-ATATAGTCACTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGAATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
69237854 CCGGA
1 CCGGA
69237859 TATCATTCGA
Statistics
Matches: 143, Mismatches: 14, Indels: 14
0.84 0.08 0.08
Matches are distributed among these distances:
38 2 0.01
39 34 0.24
40 81 0.57
41 23 0.16
42 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (41 bp):
CCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:69238576 original size:2 final size:2
Alignment explanation
Indices: 69238569--69238596 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
69238559 TCATGTGCAA
69238569 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
69238597 GCAAGAGCCG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:69248265 original size:40 final size:40
Alignment explanation
Indices: 69248126--69248268 Score: 119
Period size: 40 Copynumber: 3.6 Consensus size: 40
69248116 GCGACTCGCT
* * * *** * *
69248126 CAAAAGCCTTCGGGACATAGCCCGGTTATAATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATGGGAACTAGCA
* * * *
69248166 CAAATGCCTTCGGGACTTAACCCGGATTTGGGAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGATATGGGAACTAGCA
* **
69248206 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATGGGAAC-TAGCA
69248247 CAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
69248269 AGACATCATT
Statistics
Matches: 82, Mismatches: 18, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
39 3 0.04
40 69 0.84
41 10 0.12
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATGGGAACTAGCA
Found at i:69254047 original size:38 final size:41
Alignment explanation
Indices: 69253917--69254119 Score: 219
Period size: 40 Copynumber: 5.1 Consensus size: 41
69253907 TCGAATTTAA
* *
69253917 CCGG-ATATAGCT-ACTCGCTCAAATGCCTTCGGGACATAGC
1 CCGGAATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
69253957 CCGG-TTATAGTAACTCGCACAAATGCCTTTGGGACTTAAC
1 CCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
69253997 CCGG-ATTTAGTAACTCGCAC-AATGCCTTCGGG-CTTAGC
1 CCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
69254035 CCGGAAT-TAGTAACTCGCAC-AATGCCTTC-GGATCTTAGT
1 CCGGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
69254074 CCGG-ATATAGTCACTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGAATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
69254115 CCGGA
1 CCGGA
69254120 TATCATTCGA
Statistics
Matches: 140, Mismatches: 14, Indels: 16
0.82 0.08 0.09
Matches are distributed among these distances:
37 2 0.01
38 33 0.24
39 29 0.21
40 56 0.40
41 17 0.12
42 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (41 bp):
CCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:69254835 original size:2 final size:2
Alignment explanation
Indices: 69254828--69254857 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
69254818 TCATGTGCAA
69254828 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
69254858 GCAAGAGCCG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:69257028 original size:5 final size:5
Alignment explanation
Indices: 69257018--69257045 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
69257008 GTAATTTGAT
69257018 AAATA AAATA AAATA AAATA AAATA AAA
1 AAATA AAATA AAATA AAATA AAATA AAA
69257046 ACAAAAGTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAATA
Found at i:69257564 original size:23 final size:23
Alignment explanation
Indices: 69257538--69257589 Score: 97
Period size: 23 Copynumber: 2.3 Consensus size: 23
69257528 GAATAAATTG
69257538 CATAAATCACATTGTTTTACTAT
1 CATAAATCACATTGTTTTACTAT
69257561 CATAAATCACATTGTTTTACTAT
1 CATAAATCACATTGTTTTACTAT
69257584 C-TAAAT
1 CATAAAT
69257590 TAATAGATTG
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
22 5 0.17
23 24 0.83
ACGTcount: A:0.37, C:0.17, G:0.04, T:0.42
Consensus pattern (23 bp):
CATAAATCACATTGTTTTACTAT
Found at i:69257785 original size:2 final size:2
Alignment explanation
Indices: 69257778--69257805 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
69257768 TAATGAATTA
69257778 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
69257806 GTTATTACGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:69260051 original size:20 final size:20
Alignment explanation
Indices: 69260026--69260073 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
69260016 GAGAGTTACA
69260026 CGGCTTGGAACACGGGCGTG
1 CGGCTTGGAACACGGGCGTG
69260046 CGGCTTGGAACACGGGCGTG
1 CGGCTTGGAACACGGGCGTG
*
69260066 TGGCTTGG
1 CGGCTTGG
69260074 CCGTGTGAAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.12, C:0.23, G:0.46, T:0.19
Consensus pattern (20 bp):
CGGCTTGGAACACGGGCGTG
Found at i:69262518 original size:25 final size:25
Alignment explanation
Indices: 69262465--69262521 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 25
69262455 CAAGGTTTCC
* *
69262465 CAAATAATACGCCACATAGGCTTTT
1 CAAATAATACGCCACATAGGCATTA
69262490 CAAATAATTA-GCCACA-AGGGCATTA
1 CAAATAA-TACGCCACATA-GGCATTA
69262515 CAAATAA
1 CAAATAA
69262522 CTCACCATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
24 1 0.04
25 25 0.89
26 2 0.07
ACGTcount: A:0.44, C:0.21, G:0.12, T:0.23
Consensus pattern (25 bp):
CAAATAATACGCCACATAGGCATTA
Found at i:69262587 original size:25 final size:25
Alignment explanation
Indices: 69262474--69262580 Score: 106
Period size: 25 Copynumber: 4.3 Consensus size: 25
69262464 CCAAATAATA
* * * *
69262474 CGCCACATAGGCTTTTCAAATAATT
1 CGCCACAAAGGCTTTACAAAAAACT
* * * *
69262499 AGCCACAAGGGCATTACAAATAACT
1 CGCCACAAAGGCTTTACAAAAAACT
* * * *
69262524 CACCATAAAGGCTTTACAGAGAACT
1 CGCCACAAAGGCTTTACAAAAAACT
69262549 CGCCACAAAGGCTTTACAAAAAACT
1 CGCCACAAAGGCTTTACAAAAAACT
69262574 CGCCACA
1 CGCCACA
69262581 GAAGCTTGAT
Statistics
Matches: 65, Mismatches: 17, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
25 65 1.00
ACGTcount: A:0.39, C:0.27, G:0.14, T:0.20
Consensus pattern (25 bp):
CGCCACAAAGGCTTTACAAAAAACT
Found at i:69262672 original size:25 final size:25
Alignment explanation
Indices: 69262638--69262708 Score: 97
Period size: 25 Copynumber: 2.8 Consensus size: 25
69262628 TTGACAATAT
** **
69262638 GGCTTTACAGATAACTTGCCACGGA
1 GGCTTTACAGATAACTCACCACAAA
69262663 GGCTTTACAGATAACTCACCACAAA
1 GGCTTTACAGATAACTCACCACAAA
*
69262688 GGCTTTACAGATAAGTCACCA
1 GGCTTTACAGATAACTCACCA
69262709 TAGAAGTTAG
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (25 bp):
GGCTTTACAGATAACTCACCACAAA
Found at i:69269934 original size:40 final size:40
Alignment explanation
Indices: 69269807--69269936 Score: 156
Period size: 40 Copynumber: 3.2 Consensus size: 40
69269797 ATGCTGGAAA
* * *
69269807 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
69269847 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
69269887 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
69269927 TTATATCCGG
1 TTATATCCGG
69269937 TTGTATTCCG
Statistics
Matches: 75, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.05
40 71 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:69284368 original size:40 final size:40
Alignment explanation
Indices: 69284260--69284429 Score: 225
Period size: 40 Copynumber: 4.2 Consensus size: 40
69284250 CGGGATTTAA
* * * * *
69284260 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
69284300 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
69284340 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
69284380 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
69284420 CCGGATATAT
1 CCGGATATAT
69284430 TTCCAATGTT
Statistics
Matches: 113, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
39 1 0.01
40 112 0.99
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:69292465 original size:40 final size:40
Alignment explanation
Indices: 69292357--69292526 Score: 225
Period size: 40 Copynumber: 4.2 Consensus size: 40
69292347 CGGGATTTAA
* * * * *
69292357 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
69292397 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
69292437 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
69292477 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
69292517 CCGGATATAT
1 CCGGATATAT
69292527 TTCCAATGTT
Statistics
Matches: 113, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
39 1 0.01
40 112 0.99
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:69294420 original size:47 final size:47
Alignment explanation
Indices: 69294357--69294525 Score: 284
Period size: 47 Copynumber: 3.6 Consensus size: 47
69294347 GCATTGGAAC
*
69294357 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGAAATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGG
* *
69294404 TAATACAAGGATACCATGTAAGAACATGTTTGGAACATGACATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGG
69294451 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGG
* * *
69294498 TAAGATAAGGATATCATGTAATACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
69294526 CCAAGGCATG
Statistics
Matches: 114, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 114 1.00
ACGTcount: A:0.38, C:0.13, G:0.22, T:0.27
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGG
Found at i:69294571 original size:54 final size:54
Alignment explanation
Indices: 69294504--69294873 Score: 282
Period size: 55 Copynumber: 7.0 Consensus size: 54
69294494 TTGGTAAGAT
* *
69294504 AAGGATATCATGTAATACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGAA
1 AAGGA-ATCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGAA
** * *
69294559 CGGGAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGAA
1 AAGGAATCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTT-CTATAAGGAA
** * *
69294614 AAGGTCTCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAA-GAC
1 AAGGAATCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGAA
* * *** *
69294666 AAGCATACCATGTAAGACCATG-TTTGGAACATGGCATT--TG-G-----TAA-GAT
1 AAGGA-ATCATGTAAGACCATGCCAAGG--CATGGCATTGATGAGTTCTATAAGGAA
* * ** * * * *
69294713 AAGGATTTCATGTAAAACCATGCCAAGGCATGTAATTGATAAGTTATATTAGG-C
1 AAGGA-ATCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGAA
* * *
69294767 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCA
1 AAGG-AATCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTT-CTATAAGGAA
*** * *
69294823 AAGGTCCCATGTAAGACCATGCTAAGGCATGGCATTGGTGAGTTC-ATAAGG
1 AAGGAATCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGG
69294874 CAAGGATACC
Statistics
Matches: 247, Mismatches: 51, Indels: 36
0.74 0.15 0.11
Matches are distributed among these distances:
46 7 0.03
47 23 0.09
48 3 0.01
49 1 0.00
51 1 0.00
52 9 0.04
53 24 0.10
54 84 0.34
55 91 0.37
56 4 0.02
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.25
Consensus pattern (54 bp):
AAGGAATCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGAA
Found at i:69294702 original size:109 final size:107
Alignment explanation
Indices: 69294511--69294906 Score: 418
Period size: 109 Copynumber: 3.7 Consensus size: 107
69294501 GATAAGGATA
* * *
69294511 TCATGTAATACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGA-ACGGGA-ATCATGTAAG
1 TCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTC-ATAA-GACA-AGGATACCATGTAAG
69294574 ACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGAAAAGGTC
63 ACCATGTCAAGACATGGCATTGATGAGTTACTATAAGG-AAAGGTC
* * *
69294620 TCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGACAAGCATACCATGTAAGACC
1 TCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCATAAGACAAGGATACCATGTAAGACC
*** ** *
69294685 ATGTTTGGAACATGGCATT--TG-G-TAAGATAAGG--A--TT
66 ATGTCAAG-ACATGGCATTGATGAGTTACTATAAGGAAAGGTC
* ** * * *
69294720 TCATGTAAAACCATGCCAAGGCATGTAATTGATAAGTT-ATATTAGGCAAGGAAATCATGTAAGA
1 TCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCATA--AGACAAGGATACCATGTAAGA
69294784 CCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTC
64 CCATGTCAAGACATGGCATTGATGAGTTACTATAAGG-AAAGGTC
* * * * * * *
69294829 CCATGTAAGACCATGCTAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCACGTAAGACT
1 TCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCATAAGACAAGGATACCATGTAAGACC
69294894 ATGTCAAGACATG
66 ATGTCAAGACATG
69294907 ACAATGGTAA
Statistics
Matches: 234, Mismatches: 38, Indels: 31
0.77 0.13 0.10
Matches are distributed among these distances:
99 3 0.01
100 44 0.19
101 24 0.10
102 3 0.01
103 1 0.00
104 8 0.03
105 8 0.03
106 1 0.00
107 7 0.03
108 54 0.23
109 78 0.33
110 3 0.01
ACGTcount: A:0.35, C:0.16, G:0.24, T:0.25
Consensus pattern (107 bp):
TCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCATAAGACAAGGATACCATGTAAGACC
ATGTCAAGACATGGCATTGATGAGTTACTATAAGGAAAGGTC
Found at i:69294798 original size:100 final size:100
Alignment explanation
Indices: 69294620--69294803 Score: 228
Period size: 100 Copynumber: 1.8 Consensus size: 100
69294610 GGAAAAGGTC
* * * * *
69294620 TCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGACAAGCATACCATGTAAGACC
1 TCATGTAAAACCATGCCAAGGCATGGAATTGATAAGTTCATAAGACAAGCAAACCATGTAAGACC
***
69294685 ATGTTTGGAACATGGCATTTGGTAAGATAAGGATT
66 ATGTCAAGAACATGGCATTTGGTAAGATAAGGATT
* * * *
69294720 TCATGTAAAACCATGCCAAGGCATGTAATTGATAAGTT-ATATTAGGCAAGGAAATCATGTAAGA
1 TCATGTAAAACCATGCCAAGGCATGGAATTGATAAGTTCATA--AGACAAGCAAACCATGTAAGA
69294784 CCATGTCAAG-ACATGGCATT
64 CCATGTCAAGAACATGGCATT
69294804 GATGAGTTAC
Statistics
Matches: 70, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
99 3 0.04
100 43 0.61
101 24 0.34
ACGTcount: A:0.35, C:0.16, G:0.23, T:0.26
Consensus pattern (100 bp):
TCATGTAAAACCATGCCAAGGCATGGAATTGATAAGTTCATAAGACAAGCAAACCATGTAAGACC
ATGTCAAGAACATGGCATTTGGTAAGATAAGGATT
Found at i:69294811 original size:209 final size:209
Alignment explanation
Indices: 69294451--69294897 Score: 743
Period size: 209 Copynumber: 2.1 Consensus size: 209
69294441 TGACATTTGG
69294451 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGGTAAGATAAGGATATCATG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGGTAAGATAAGGATATCATG
* * * *
69294516 TAATACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGAACGGGAATCATGTAAGACCATGT
66 TAAAACCATGCCAAGGCATGGAATTGATAAGTTATATAAGGAACGGAAATCATGTAAGACCATGT
*
69294581 CAAGACATGGCATTGATGAGTTACTATAAGGAAAAGGTCTCATGTAAGACCATGCCAAGGCATGG
131 CAAGACATGGCATTGATGAGTTACTATAAGGAAAAGGTCCCATGTAAGACCATGCCAAGGCATGG
69294646 CATTGGTGAGTTCA
196 CATTGGTGAGTTCA
* * *
69294660 TAAGACAAGCATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGATTTCATG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGGTAAGATAAGGATATCATG
* *
69294725 TAAAACCATGCCAAGGCATGTAATTGATAAGTTATATTAGGCAA-GGAAATCATGTAAGACCATG
66 TAAAACCATGCCAAGGCATGGAATTGATAAGTTATATAAGG-AACGGAAATCATGTAAGACCATG
* *
69294789 TCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCCCATGTAAGACCATGCTAAGGCATG
130 TCAAGACATGGCATTGATGAGTTACTATAAGGAAAAGGTCCCATGTAAGACCATGCCAAGGCATG
69294854 GCATTGGTGAGTTCA
195 GCATTGGTGAGTTCA
* * *
69294869 TAAGGCAAGGATACCACGTAAGACTATGT
1 TAAGACAAGGATACCATGTAAGACCATGT
69294898 CAAGACATGA
Statistics
Matches: 221, Mismatches: 16, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
209 219 0.99
210 2 0.01
ACGTcount: A:0.36, C:0.15, G:0.24, T:0.25
Consensus pattern (209 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGGTAAGATAAGGATATCATG
TAAAACCATGCCAAGGCATGGAATTGATAAGTTATATAAGGAACGGAAATCATGTAAGACCATGT
CAAGACATGGCATTGATGAGTTACTATAAGGAAAAGGTCCCATGTAAGACCATGCCAAGGCATGG
CATTGGTGAGTTCA
Found at i:69297940 original size:21 final size:21
Alignment explanation
Indices: 69297902--69297947 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
69297892 CACACGCTCA
* *
69297902 TGTGAAAGGGCACCACACCCG
1 TGTGAAAGGGCAACACACACG
*
69297923 TGTGAAAGGGCAATACACACG
1 TGTGAAAGGGCAACACACACG
69297944 TGTG
1 TGTG
69297948 GTCATTATAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.30, C:0.24, G:0.30, T:0.15
Consensus pattern (21 bp):
TGTGAAAGGGCAACACACACG
Found at i:69299283 original size:49 final size:50
Alignment explanation
Indices: 69299118--69299292 Score: 152
Period size: 49 Copynumber: 3.6 Consensus size: 50
69299108 GGTATAATGC
* * *
69299118 CGATGCCATGTCCCAGACATGGTCTTACACT-G-GCTCATC-CATCAAGTT
1 CGATGCCATGTCCTAGACATGGTCTTACACTAGATCTCA-CAAATCAAGTT
* * **
69299166 -GATGCCATGTCCTAGACATGGTCTTACACTA-ACTATCA-AAATCGAGAC
1 CGATGCCATGTCCTAGACATGGTCTTACACTAGA-TCTCACAAATCAAGTT
* * * * *
69299214 CAACGCCATGT-CTCAGACATGGTCTTACACTAGATCTCACATATCCATTT
1 CGATGCCATGTCCT-AGACATGGTCTTACACTAGATCTCACAAATCAAGTT
69299264 CGATGCCATGTCCTA-ACAT-GTCTTACACT
1 CGATGCCATGTCCTAGACATGGTCTTACACT
69299293 GGCTTACATC
Statistics
Matches: 101, Mismatches: 17, Indels: 18
0.74 0.12 0.13
Matches are distributed among these distances:
47 29 0.29
48 17 0.17
49 37 0.37
50 16 0.16
51 2 0.02
ACGTcount: A:0.27, C:0.29, G:0.15, T:0.28
Consensus pattern (50 bp):
CGATGCCATGTCCTAGACATGGTCTTACACTAGATCTCACAAATCAAGTT
Found at i:69299329 original size:46 final size:50
Alignment explanation
Indices: 69299263--69299393 Score: 130
Period size: 52 Copynumber: 2.7 Consensus size: 50
69299253 CATATCCATT
* *
69299263 TCGATGCCATGTCCTA-ACATGTCTTACACTGGCT-TACATCTC-GA-G-GC
1 TCGATG-CATGTCCCAGACATGTCTTACACTGGCTCT-CATCTCAAATGTGC
* * * *
69299310 T-GATGCATGTGCCAGACATGTGTTACACTAGCTCTCATCTCAATAATGTGG
1 TCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCTC-A-AATGTGC
69299361 TCGATGCATGTCCCAGACATGTCTTACACTGGC
1 TCGATGCATGTCCCAGACATGTCTTACACTGGC
69299394 ACACAAATAA
Statistics
Matches: 67, Mismatches: 9, Indels: 11
0.77 0.10 0.13
Matches are distributed among these distances:
45 7 0.10
46 26 0.39
47 2 0.03
49 1 0.01
50 1 0.01
51 2 0.03
52 28 0.42
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.30
Consensus pattern (50 bp):
TCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCTCAAATGTGC
Found at i:69302058 original size:43 final size:41
Alignment explanation
Indices: 69302011--69302112 Score: 116
Period size: 41 Copynumber: 2.4 Consensus size: 41
69302001 CCCGGATATA
* *
69302011 GTCTTACATGTAATCTCTTATCAATGCCAATATCCCAACTATG
1 GTCTTACACGTAATCTCATATCAATG-CAATAT-CCAACTATG
* * **
69302054 GTCTTACACG-AAGTCTCATATCGATGCTATATCCAGTTATG
1 GTCTTACACGTAA-TCTCATATCAATGCAATATCCAACTATG
69302095 GTCTTACACGTAATCTCA
1 GTCTTACACGTAATCTCA
69302113 GTAACCCTAA
Statistics
Matches: 51, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
41 22 0.43
42 9 0.18
43 20 0.39
ACGTcount: A:0.28, C:0.25, G:0.13, T:0.34
Consensus pattern (41 bp):
GTCTTACACGTAATCTCATATCAATGCAATATCCAACTATG
Found at i:69304695 original size:40 final size:40
Alignment explanation
Indices: 69304650--69304815 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
69304640 CGGAATATAA
69304650 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
69304690 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
69304730 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
69304770 CCGGATATAATTTCCAGCATAATTGTCTTC-GG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
69304808 CCGGATAT
1 CCGGATAT
69304816 CATTCAATTT
Statistics
Matches: 106, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
38 13 0.12
39 3 0.03
40 90 0.85
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:69304800 original size:80 final size:78
Alignment explanation
Indices: 69304650--69304815 Score: 194
Period size: 80 Copynumber: 2.1 Consensus size: 78
69304640 CGGAATATAA
* *
69304650 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
69304715 CCTTCGGGCCTTAGC
66 CCTTC-GG-CTTAGC
* * ** *
69304730 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
69304792 TTGTCTTCGGCTTAGC
64 -TGCCTTCGGCTTAGC
69304808 CCGGATAT
1 CCGGATAT
69304816 CATTCAATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
78 14 0.19
79 6 0.08
80 55 0.73
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (78 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGCTTAGC
Found at i:69306641 original size:40 final size:40
Alignment explanation
Indices: 69306586--69306795 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
69306576 AACATTGGAA
69306586 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
69306626 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
69306666 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
69306706 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
69306745 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
69306786 CTATATCCGG
1 ATATATCCGG
69306796 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:69314197 original size:40 final size:40
Alignment explanation
Indices: 69314152--69314319 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
69314142 CGGAATATAA
69314152 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* *** * *
69314192 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
69314232 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
69314272 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
69314312 CCGGATAT
1 CCGGATAT
69314320 CATTCAATTT
Statistics
Matches: 102, Mismatches: 25, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 101 0.99
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:69314302 original size:80 final size:80
Alignment explanation
Indices: 69314168--69314317 Score: 205
Period size: 80 Copynumber: 1.9 Consensus size: 80
69314158 ATAACCACGT
* *
69314168 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
69314233 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * * * *
69314248 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGGCTTAG
69314311 CCCGGAT
64 CCCGGAT
69314318 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
79 3 0.05
80 58 0.95
ACGTcount: A:0.21, C:0.27, G:0.25, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:69321177 original size:79 final size:81
Alignment explanation
Indices: 69321041--69321225 Score: 245
Period size: 79 Copynumber: 2.3 Consensus size: 81
69321031 TCGAATGATG
*
69321041 TCCGGGCTAAGTCCCGAAGGCTTT-GTGCTAAGTGACTAAATCCAGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCTTTGGTGCTAAGTCACTAAATCCAGACTAAGATCCGAAGGCATT
69321105 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * **
69321120 TTCCGGGCTAAG-CCCGAAGGCTTTGGTGC-GAGTCACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCTTTGGTGCTAAGTCACTAAATCCAGACTAAGAT-CCGAAGGCA
69321182 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
69321200 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGC-TTTG
69321226 AACGAGTAGC
Statistics
Matches: 93, Mismatches: 7, Indels: 9
0.85 0.06 0.08
Matches are distributed among these distances:
78 1 0.01
79 63 0.68
80 25 0.27
81 4 0.04
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGGTGCTAAGTCACTAAATCCAGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:69321232 original size:40 final size:39
Alignment explanation
Indices: 69321042--69321225 Score: 205
Period size: 40 Copynumber: 4.6 Consensus size: 39
69321032 CGAATGATGT
* *
69321042 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
69321081 TCCAGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATT
1 -CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
*
69321122 CCGGGCTAAG-CCCGAAGGC-TTTGGTGCGAGTCACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTT-GTGCGAGTTACTAAA
*
69321160 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
69321201 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
69321226 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 13, Indels: 18
0.80 0.08 0.12
Matches are distributed among these distances:
38 3 0.02
39 30 0.25
40 76 0.62
41 13 0.11
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:69321247 original size:79 final size:79
Alignment explanation
Indices: 69321042--69321258 Score: 205
Period size: 79 Copynumber: 2.7 Consensus size: 79
69321032 CGAATGATGT
* * * **
69321042 CCGGGCTAAGTCCCGAAGGCTTTGTG--CTAAGTGACTAAATCCAGACTAAGAT-CCGAAGGCAT
1 CCGGGCTAAG-CCCGAAGGCTTTG-GAAC-GAGTCACTAAATCCGGGTTAA-ATCCCGAAGGCAT
*
69321104 TTGTGCGAGTTACTAATT
62 TTGTGCGAGTTACTAATA
** *
69321122 CCGGGCTAAGCCCGAAGGCTTTGGTGCGAGTCACTAAATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCTTTGGAACGAGTCACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
69321187 GCGAGTTACT-ATAA
66 GCGAGTTACTAAT-A
* * *
69321201 CCGGGCTATGTCCCGAAGGCATTT-GAACGAGT-AGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGC-TTTGGAACGAGTCA-CTAAATCCGGGTTAAATCCCGAAGG
69321259 TACGTGATTC
Statistics
Matches: 117, Mismatches: 13, Indels: 15
0.81 0.09 0.10
Matches are distributed among these distances:
78 4 0.03
79 77 0.66
80 33 0.28
81 3 0.03
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCTTTGGAACGAGTCACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
GCGAGTTACTAATA
Found at i:69328916 original size:27 final size:27
Alignment explanation
Indices: 69328878--69328933 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
69328868 ATTTTATTAC
*
69328878 TTGTTGCGATTATGTACACTTGCACAT
1 TTGTTGCGATTATGTACACTTACACAT
69328905 TTGTTGCGATTATGTACACTTACACAT
1 TTGTTGCGATTATGTACACTTACACAT
69328932 TT
1 TT
69328934 CTGTCGTTTC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.23, C:0.18, G:0.16, T:0.43
Consensus pattern (27 bp):
TTGTTGCGATTATGTACACTTACACAT
Found at i:69330127 original size:63 final size:63
Alignment explanation
Indices: 69330054--69330177 Score: 212
Period size: 63 Copynumber: 2.0 Consensus size: 63
69330044 TCTATTACAT
*
69330054 GGAAGGACATCTGTTCAAAGAATGTCCATCAAACCCAGAATCCATGTATTATATGGGTAACAG
1 GGAAGGACATCTGTTCAAAGAATGTCCATCAAACCCAGAATCCATGTATTACATGGGTAACAG
** *
69330117 GGAAGGACATCTGTTTGAAGAATGTCTATCAAACCCAGAATCCATGTATTACATGGGTAAC
1 GGAAGGACATCTGTTCAAAGAATGTCCATCAAACCCAGAATCCATGTATTACATGGGTAAC
69330178 CGGAACCAAA
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
63 57 1.00
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.25
Consensus pattern (63 bp):
GGAAGGACATCTGTTCAAAGAATGTCCATCAAACCCAGAATCCATGTATTACATGGGTAACAG
Found at i:69339740 original size:22 final size:22
Alignment explanation
Indices: 69339715--69339760 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
69339705 GACTATTGTG
69339715 ATTAAACTGTTTCAAGGTAGAA
1 ATTAAACTGTTTCAAGGTAGAA
69339737 ATTAAACTGTTTCAAGGTAGAA
1 ATTAAACTGTTTCAAGGTAGAA
69339759 AT
1 AT
69339761 ACATTGTTAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.41, C:0.09, G:0.17, T:0.33
Consensus pattern (22 bp):
ATTAAACTGTTTCAAGGTAGAA
Found at i:69342785 original size:2 final size:2
Alignment explanation
Indices: 69342778--69342808 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
69342768 ATATGCATGC
69342778 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
69342809 AGCTTACAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:69343646 original size:23 final size:23
Alignment explanation
Indices: 69343615--69343660 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
69343605 GTTAAGGTTC
*
69343615 AACGAGACTTCTCACTTGTCGAA
1 AACGAGACTTCTCACTTGCCGAA
*
69343638 AACGGGACTTCTCACTTGCCGAA
1 AACGAGACTTCTCACTTGCCGAA
69343661 TTGTCGTTGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (23 bp):
AACGAGACTTCTCACTTGCCGAA
Found at i:69345057 original size:20 final size:19
Alignment explanation
Indices: 69345034--69345075 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
69345024 TAAAGAAAGT
69345034 AAAT-AAAATGGAAAGTAATG
1 AAATGAAAAT-GAAAGTAA-G
*
69345054 AAATGTAAATGAAAGTAAG
1 AAATGAAAATGAAAGTAAG
69345073 AAA
1 AAA
69345076 ATTTGAAAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 4 0.20
20 12 0.60
21 4 0.20
ACGTcount: A:0.62, C:0.00, G:0.19, T:0.19
Consensus pattern (19 bp):
AAATGAAAATGAAAGTAAG
Found at i:69346821 original size:11 final size:11
Alignment explanation
Indices: 69346805--69346832 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
69346795 TACAACCCAT
69346805 GCATTATTAAA
1 GCATTATTAAA
69346816 GCATTATTAAA
1 GCATTATTAAA
69346827 GCATTA
1 GCATTA
69346833 AAAACATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.43, C:0.11, G:0.11, T:0.36
Consensus pattern (11 bp):
GCATTATTAAA
Found at i:69348072 original size:15 final size:16
Alignment explanation
Indices: 69348052--69348081 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
69348042 TGGTGCCTTA
69348052 TTGAT-ATGTGTTAAT
1 TTGATAATGTGTTAAT
69348067 TTGATAATGTGTTAA
1 TTGATAATGTGTTAA
69348082 AACATGTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.30, C:0.00, G:0.20, T:0.50
Consensus pattern (16 bp):
TTGATAATGTGTTAAT
Found at i:69357589 original size:43 final size:43
Alignment explanation
Indices: 69357505--69357662 Score: 133
Period size: 43 Copynumber: 3.7 Consensus size: 43
69357495 TTTGAGACAT
* * * ***
69357505 CGTGTAAGACCGTGTCTGGGACA-CAGGCCTCGATTGAGATTTA
1 CGTGTAAGACCATGTCTGGGACATC-GGCATCTATACTGATTTA
* *
69357548 CGTATAAGACCATGTCTGGGACATCGGTATCGTAT-CTGATTT-
1 CGTGTAAGACCATGTCTGGGACATCGGCATC-TATACTGATTTA
* * * * *
69357590 CGTGTAAGACCCTGTCTAGGACATAGGCATCTATATTGAATTA
1 CGTGTAAGACCATGTCTGGGACATCGGCATCTATACTGATTTA
* * *
69357633 CATGTAAGACCACGTCTGGGACGTCGGCAT
1 CGTGTAAGACCATGTCTGGGACATCGGCAT
69357663 TGTACTTGTT
Statistics
Matches: 91, Mismatches: 20, Indels: 8
0.76 0.17 0.07
Matches are distributed among these distances:
41 3 0.03
42 31 0.34
43 54 0.59
44 3 0.03
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (43 bp):
CGTGTAAGACCATGTCTGGGACATCGGCATCTATACTGATTTA
Found at i:69357650 original size:85 final size:85
Alignment explanation
Indices: 69357504--69357659 Score: 199
Period size: 85 Copynumber: 1.8 Consensus size: 85
69357494 GTTTGAGACA
* * * * *
69357504 TCGTGTAAGACCGTGTCTGGGACACAGGCCTCGATTGAGATTTACGTATAAGACCATGTCTGGGA
1 TCGTGTAAGACCCTGTCTAGGACACAGGCCTAGATTGAGATTTACATATAAGACCACGTCTGGGA
69357569 CATCGGTATCGTATCTGATT
66 CATCGGTATCGTATCTGATT
* * *
69357589 TCGTGTAAGACCCTGTCTAGGACATAGGCATCTATATTGA-A-TTACATGTAAGACCACGTCTGG
1 TCGTGTAAGACCCTGTCTAGGACACAGGC--CTAGATTGAGATTTACATATAAGACCACGTCTGG
*
69357652 GACGTCGG
64 GACATCGG
69357660 CATTGTACTT
Statistics
Matches: 60, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
85 52 0.87
86 1 0.02
87 7 0.12
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (85 bp):
TCGTGTAAGACCCTGTCTAGGACACAGGCCTAGATTGAGATTTACATATAAGACCACGTCTGGGA
CATCGGTATCGTATCTGATT
Found at i:69359687 original size:40 final size:39
Alignment explanation
Indices: 69359522--69359705 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
69359512 AAATTGAATG
* * *
69359522 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
69359562 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
69359602 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
69359642 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
69359681 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
69359706 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:69359730 original size:80 final size:81
Alignment explanation
Indices: 69359562--69359750 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
69359552 GCTGGAAATT
* * * *
69359562 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
69359627 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
69359643 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
69359706 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
69359722 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
69359751 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:69367802 original size:40 final size:39
Alignment explanation
Indices: 69367637--69367820 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
69367627 AAATTGAATG
* * *
69367637 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
69367677 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
69367717 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
69367757 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
69367796 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
69367821 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:69367845 original size:80 final size:81
Alignment explanation
Indices: 69367677--69367865 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
69367667 GCTGGAAATT
* * * *
69367677 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
69367742 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
69367758 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
69367821 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
69367837 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
69367866 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:69370592 original size:7 final size:7
Alignment explanation
Indices: 69370580--69370658 Score: 149
Period size: 7 Copynumber: 11.3 Consensus size: 7
69370570 TATTATATAA
69370580 GTTTAGG
1 GTTTAGG
69370587 GTTTAGG
1 GTTTAGG
69370594 GTTTAGG
1 GTTTAGG
69370601 GTTTAGG
1 GTTTAGG
69370608 GTTTAGG
1 GTTTAGG
69370615 GTTTAGG
1 GTTTAGG
*
69370622 GTTCAGG
1 GTTTAGG
69370629 GTTTAGG
1 GTTTAGG
69370636 GTTTAGG
1 GTTTAGG
69370643 GTTTAGG
1 GTTTAGG
69370650 GTTTAGG
1 GTTTAGG
69370657 GT
1 GT
69370659 ATGGATCTAT
Statistics
Matches: 70, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
7 70 1.00
ACGTcount: A:0.14, C:0.01, G:0.43, T:0.42
Consensus pattern (7 bp):
GTTTAGG
Found at i:69380800 original size:49 final size:49
Alignment explanation
Indices: 69380742--69381009 Score: 450
Period size: 49 Copynumber: 5.5 Consensus size: 49
69380732 GTATGAGATG
69380742 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
69380791 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
69380840 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG-G-G
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
* *
69380887 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
* *
69380936 TATATATGTGATAAGGCCTAATGGCCGATGTGACGAATGTGAAAATGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
* *
69380985 TATATATGTGATAAAGCCGAATGGC
1 TATATATGTGATAAGGCCTAATGGC
69381010 TAATGTGAAT
Statistics
Matches: 209, Mismatches: 8, Indels: 4
0.95 0.04 0.02
Matches are distributed among these distances:
47 44 0.21
48 2 0.01
49 163 0.78
ACGTcount: A:0.33, C:0.09, G:0.28, T:0.29
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
Found at i:69380920 original size:96 final size:96
Alignment explanation
Indices: 69380740--69381009 Score: 432
Period size: 96 Copynumber: 2.8 Consensus size: 96
69380730 ATGTATGAGA
69380740 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG-G-ATATATATGTGATAA
* *
69380805 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG
64 GGCCTAATGGCCGACGTGATGAATGTGAAAATG
*
69380838 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGGGTATATATGTGATAAGG
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGGATATATATGTGATAAGG
69380903 CCTAATGGCCGACGTGATGAATGTGAAAATG
66 CCTAATGGCCGACGTGATGAATGTGAAAATG
* * *
69380934 TATATATATGTGATAAGGCCTAATGGCCGATGTGACGAATGTGAAAATGTATATATATGTGATAA
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAA-GGATATATATGTGATAA
* *
69380999 AGCCGAATGGC
64 GGCCTAATGGC
69381010 TAATGTGAAT
Statistics
Matches: 161, Mismatches: 9, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
96 86 0.53
97 4 0.02
98 71 0.44
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (96 bp):
TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGGATATATATGTGATAAGG
CCTAATGGCCGACGTGATGAATGTGAAAATG
Found at i:69381008 original size:145 final size:145
Alignment explanation
Indices: 69380741--69381009 Score: 475
Period size: 145 Copynumber: 1.9 Consensus size: 145
69380731 TGTATGAGAT
* *
69380741 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
1 GTATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATATATATGTGATAAG
* * * * *
69380806 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGT
66 GCCTAATGGCCGATGTGACGAATGTGAAAATGTATATATATGTGATAAAGCCGAATGGCCGATGT
69380871 GATGAATGTGAAAGG
131 GATGAATGTGAAAGG
69380886 GTATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATATATATGTGATAAG
1 GTATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATATATATGTGATAAG
69380951 GCCTAATGGCCGATGTGACGAATGTGAAAATGTATATATATGTGATAAAGCCGAATGGC
66 GCCTAATGGCCGATGTGACGAATGTGAAAATGTATATATATGTGATAAAGCCGAATGGC
69381010 TAATGTGAAT
Statistics
Matches: 117, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
145 117 1.00
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (145 bp):
GTATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATATATATGTGATAAG
GCCTAATGGCCGATGTGACGAATGTGAAAATGTATATATATGTGATAAAGCCGAATGGCCGATGT
GATGAATGTGAAAGG
Found at i:69381118 original size:37 final size:36
Alignment explanation
Indices: 69381058--69381144 Score: 120
Period size: 37 Copynumber: 2.3 Consensus size: 36
69381048 AACTTGGAAA
*
69381058 TATGTTCCGGGTGAGACCTGATGACTACGTGTGAAGAT
1 TATG-TCCGGGT-AGACCCGATGACTACGTGTGAAGAT
*
69381096 TATGTCCGGGTACGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTA-GACCCGATGACTACGTGTGAAGAT
*
69381133 TATGTCTGGGTA
1 TATGTCCGGGTA
69381145 AGACTTCGTA
Statistics
Matches: 45, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
36 1 0.02
37 40 0.89
38 4 0.09
ACGTcount: A:0.22, C:0.17, G:0.32, T:0.29
Consensus pattern (36 bp):
TATGTCCGGGTAGACCCGATGACTACGTGTGAAGAT
Found at i:69384740 original size:2 final size:2
Alignment explanation
Indices: 69384733--69384773 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
69384723 ATTTTAATGT
69384733 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
69384774 GTTATTGTGT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:69387334 original size:25 final size:27
Alignment explanation
Indices: 69387306--69387359 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 27
69387296 ATATTTAGGG
*
69387306 CACTTTG-CATTTTAGTACATT-TTCA
1 CACTTTGTCAATTTAGTACATTCTTCA
*
69387331 CACTTTGTCAATTTAGTCCATTCTTCA
1 CACTTTGTCAATTTAGTACATTCTTCA
69387358 CA
1 CA
69387360 AAATCACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.28
26 12 0.48
27 6 0.24
ACGTcount: A:0.24, C:0.24, G:0.07, T:0.44
Consensus pattern (27 bp):
CACTTTGTCAATTTAGTACATTCTTCA
Found at i:69391006 original size:14 final size:13
Alignment explanation
Indices: 69390973--69391002 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
69390963 TGCATAATTG
*
69390973 GAAATGGTTATAT
1 GAAATAGTTATAT
69390986 GAAATAGTTATAT
1 GAAATAGTTATAT
69390999 GAAA
1 GAAA
69391003 ATAGATATAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.47, C:0.00, G:0.20, T:0.33
Consensus pattern (13 bp):
GAAATAGTTATAT
Found at i:69400304 original size:40 final size:40
Alignment explanation
Indices: 69400196--69400305 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
69400186 TTTGAATGAT
* * * * *
69400196 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
* * *
69400236 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
69400276 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
69400306 AAATTGTGAA
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
Found at i:69400320 original size:40 final size:39
Alignment explanation
Indices: 69400196--69400345 Score: 133
Period size: 40 Copynumber: 3.8 Consensus size: 39
69400186 TTTGAATGAT
* * * * * * *
69400196 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGA-CAC
*
69400236 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGAC-AC
* *
69400276 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATTGTGA-A-
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC---TAGTGACAC
* *
69400316 ATCCGGGTTAAGTCCCGAAGGCCTTTGTGC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC
69400346 GGGTTACCAT
Statistics
Matches: 92, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
40 86 0.93
41 1 0.01
43 5 0.05
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGACAC
Found at i:69404323 original size:27 final size:28
Alignment explanation
Indices: 69404293--69404362 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
69404283 ATAGTGTGTC
*
69404293 CGCACACTTAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
69404320 CGCACACTTAGTGCTACATGATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
69404348 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
69404363 GTACAAGTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:69408350 original size:172 final size:172
Alignment explanation
Indices: 69408064--69408418 Score: 701
Period size: 172 Copynumber: 2.1 Consensus size: 172
69408054 CCAGAAGGAG
69408064 CAAAAAAATATATAGTAAAATGATTATGTGATCTCAAATTCTCAACTGGATTTATTTTCTGCATA
1 CAAAAAAATATATAGTAAAATGATTATGTGATCTCAAATTCTCAACTGGATTTATTTTCTGCATA
69408129 GATTTACAACACAGAGATAGGAGAGAAGAAAAATACAAAATTGCTGCAATTTCTCTCATTAGATA
66 GATTTACAACACAGAGATAGGAGAGAAGAAAAATACAAAATTGCTGCAATTTCTCTCATTAGATA
69408194 TATGGAGAAAATACATAAAAAAATCATTTATAGCTCATATAC
131 TATGGAGAAAATACATAAAAAAATCATTTATAGCTCATATAC
69408236 CAAAAAAATATATAGTAAAATGATTATGTGATCTCAAATTCTCAACTGGATTTATTTTCTGCATA
1 CAAAAAAATATATAGTAAAATGATTATGTGATCTCAAATTCTCAACTGGATTTATTTTCTGCATA
69408301 GATTTACAACACAGAGATAGGAGAGAAGAAAAATACAAAATTGCTGCAATTTCTCTCATTAGATA
66 GATTTACAACACAGAGATAGGAGAGAAGAAAAATACAAAATTGCTGCAATTTCTCTCATTAGATA
69408366 TATGGAGAAAATACATAAAAAAATCATTTATAGCTCATATAC
131 TATGGAGAAAATACATAAAAAAATCATTTATAGCTCATATAC
69408408 CAATAAAAATA
1 CAA-AAAAATA
69408419 AAATATAAAA
Statistics
Matches: 182, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
172 175 0.96
173 7 0.04
ACGTcount: A:0.45, C:0.13, G:0.12, T:0.30
Consensus pattern (172 bp):
CAAAAAAATATATAGTAAAATGATTATGTGATCTCAAATTCTCAACTGGATTTATTTTCTGCATA
GATTTACAACACAGAGATAGGAGAGAAGAAAAATACAAAATTGCTGCAATTTCTCTCATTAGATA
TATGGAGAAAATACATAAAAAAATCATTTATAGCTCATATAC
Found at i:69410030 original size:28 final size:29
Alignment explanation
Indices: 69409981--69410040 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 29
69409971 CCCCATATTT
* *
69409981 ATCCCTAAACGCTAAAAATTAAACCCT-G
1 ATCCCCAAACGCCAAAAATTAAACCCTAG
** *
69410009 ATCCCCAAACGCCAAACCTTAAATCCTAG
1 ATCCCCAAACGCCAAAAATTAAACCCTAG
69410038 ATC
1 ATC
69410041 ATAAATCCTA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
28 22 0.85
29 4 0.15
ACGTcount: A:0.40, C:0.33, G:0.07, T:0.20
Consensus pattern (29 bp):
ATCCCCAAACGCCAAAAATTAAACCCTAG
Found at i:69412435 original size:42 final size:42
Alignment explanation
Indices: 69412388--69412814 Score: 512
Period size: 42 Copynumber: 10.2 Consensus size: 42
69412378 ATATACGATA
* * ** *
69412388 CAATGAAAAGTAAATGGACCTCAACACTTGCACCTTTAAATG
1 CAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATG
* *
69412430 CAATGAAAAATAAATTGACCTCCACACCTGGGCCTCTAAATG
1 CAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATG
* ** * *
69412472 CAACGAAAAGTAAATGGACCTATACACCTAGGTCTCTAAATG
1 CAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATG
* * * *
69412514 CAATGAAAAGTGAATGGACTTCTACACCTGGGTCTCTAAATG
1 CAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATG
* * * *
69412556 GAATGAAAAGTGAATGGACCTCTACACCTGGGCCTCTACATG
1 CAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATG
* * * *
69412598 CAACGAAAAGTAAATGGACCTCCACGCTTGGGCCCCTAAATG
1 CAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATG
* * *
69412640 CAATGAAAAGTGAATGGACTTCCACACCTGGGTCTCTAAATG
1 CAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATG
* * * *
69412682 TAATGAAAAGTGAATGGACCTCCACACCTGGGCCCCTGAATG
1 CAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATG
* * * *
69412724 CAATGAAAAGTAAATGAACCTCCACACTTGGTCCTCTTAATG
1 CAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATG
* * *
69412766 CAATGAAAAGTGAATGAACCTCCACACCTGAGCCTCTAAATG
1 CAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATG
69412808 CAATGAA
1 CAATGAA
69412815 TGCTTTCCTT
Statistics
Matches: 330, Mismatches: 55, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 330 1.00
ACGTcount: A:0.36, C:0.24, G:0.19, T:0.22
Consensus pattern (42 bp):
CAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATG
Found at i:69419490 original size:40 final size:40
Alignment explanation
Indices: 69419445--69419645 Score: 262
Period size: 40 Copynumber: 5.0 Consensus size: 40
69419435 CGTGATTTAA
* * *
69419445 CCGGATATAGCT-ACTCGCTCGAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
69419485 CCGGATATAGTAACTCACACCAATGCCTTCAGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
69419525 CCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
69419565 CCGGATATAGTAACTCGCACAAACGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
69419605 CCGGA-ACTAGTCACTAGCGCAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
69419645 C
1 C
69419646 TGGTTATCAT
Statistics
Matches: 144, Mismatches: 15, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
39 2 0.01
40 142 0.99
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.21
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:69432360 original size:40 final size:40
Alignment explanation
Indices: 69432258--69432441 Score: 190
Period size: 40 Copynumber: 4.6 Consensus size: 40
69432248 AAATTGAATG
* * * ** * *
69432258 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAGTT
* * *
69432298 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAGTT
*
69432338 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTAGTT
* * * *
69432378 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAGTT
* * *
69432418 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
69432442 CTTGGTGCGG
Statistics
Matches: 122, Mismatches: 20, Indels: 4
0.84 0.14 0.03
Matches are distributed among these distances:
39 3 0.02
40 117 0.96
41 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAGTT
Found at i:69432466 original size:80 final size:80
Alignment explanation
Indices: 69432300--69432486 Score: 189
Period size: 80 Copynumber: 2.3 Consensus size: 80
69432290 TGGAAATTAT
* *
69432300 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCTATATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAGCTATATCCGGGCTAAGACCCGAAGGCATT
***
69432365 CGTGCAAGTTGTTAA
66 CGTGCAAGTTACCAA
* * * * * *
69432380 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCG-TGATATCCGGGTTAAGTCCCGTAGGCCT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAGCT-ATATCCGGGCTAAGACCCGAAGGCAT
* **
69432444 TGGTGCGGGTTACCATA
65 TCGTGCAAGTTACCA-A
* * *
69432461 A-CCGGGCTATGTCCCGAAGGCGATTG
1 ATCCGGGCTAAGACCCGAAGGCAATTG
69432487 AACGAGTAGC
Statistics
Matches: 87, Mismatches: 18, Indels: 4
0.80 0.17 0.04
Matches are distributed among these distances:
79 1 0.01
80 84 0.97
81 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.30, T:0.24
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAGCTATATCCGGGCTAAGACCCGAAGGCATT
CGTGCAAGTTACCAA
Found at i:69437189 original size:22 final size:22
Alignment explanation
Indices: 69437163--69437227 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
69437153 GTAAATACGT
* *
69437163 TTGGCCCACAGCCATAGTCAGG
1 TTGGCACAAAGCCATAGTCAGG
*
69437185 TTGGCACAGAGCCATATGT-AGG
1 TTGGCACAAAGCCATA-GTCAGG
* *
69437207 TTGGCGCAAAGCCATAATCAG
1 TTGGCACAAAGCCATAGTCAG
69437228 AATAATTGGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 33 0.92
23 2 0.06
ACGTcount: A:0.28, C:0.25, G:0.28, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAGG
Found at i:69437430 original size:41 final size:41
Alignment explanation
Indices: 69437372--69437491 Score: 170
Period size: 41 Copynumber: 2.9 Consensus size: 41
69437362 AAGCCACCGG
69437372 CGGATCCATGATCGTCAAGCAACCATGTGATCCTTAATCGGT
1 CGGATCCATGATCGTCAAGCAACCATGTGATCCTTAATC-GT
* * * *
69437414 -GGATCCATGAACGTCAAGAAACCATGCGATCCTCAATCGT
1 CGGATCCATGATCGTCAAGCAACCATGTGATCCTTAATCGT
* *
69437454 CGGATCCACGGTCGTCAAGCAACCATGTGATCCTTAAT
1 CGGATCCATGATCGTCAAGCAACCATGTGATCCTTAAT
69437492 TTCTTCCTCC
Statistics
Matches: 67, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
40 2 0.03
41 65 0.97
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (41 bp):
CGGATCCATGATCGTCAAGCAACCATGTGATCCTTAATCGT
Found at i:69437785 original size:27 final size:27
Alignment explanation
Indices: 69437749--69438061 Score: 147
Period size: 27 Copynumber: 11.7 Consensus size: 27
69437739 TTGGTAAATC
*
69437749 TACAAGCCAAGGGTATTTCGGTAATTT
1 TACAAACCAAGGGTATTTCGGTAATTT
* * **
69437776 TGCAAACCAATGGTATTTTTGTAATTT
1 TACAAACCAAGGGTATTTCGGTAATTT
* ** *
69437803 T-CTTAATTAAGGGTATTTCGATAATTT
1 TAC-AAACCAAGGGTATTTCGGTAATTT
* ** * *
69437830 TCCAAATTAGGGGTATTTTGGTAATTT
1 TACAAACCAAGGGTATTTCGGTAATTT
***
69437857 TACAAATTGAGGGTATTT---TAATTT
1 TACAAACCAAGGGTATTTCGGTAATTT
** *
69437881 TAC-AAGTAGAGGGTATTTCGATAATTT
1 TACAAACCA-AGGGTATTTCGGTAATTT
*** * *
69437908 TACAGGTCGAGGGTATCTCGGTAATTT
1 TACAAACCAAGGGTATTTCGGTAATTT
* ** *
69437935 CACAAA-TTAGAGGTATTTTGGTAATTT
1 TACAAACCAAG-GGTATTTCGGTAATTT
*
69437962 TACAAACCAAGGGTATTTTGGTAATTT
1 TACAAACCAAGGGTATTTCGGTAATTT
* *** * *
69437989 TGCTAATTGAA-GGTATTTTGTTAATTTT
1 TAC-AAACCAAGGGTATTTCGGTAA-TTT
** * *
69438017 TGTAAACCAATGGTATTT-AGTAATTT
1 TACAAACCAAGGGTATTTCGGTAATTT
**
69438043 TGTAAACCAAGGGTATTTC
1 TACAAACCAAGGGTATTTC
69438062 AGTATTTCTA
Statistics
Matches: 223, Mismatches: 50, Indels: 26
0.75 0.17 0.09
Matches are distributed among these distances:
23 3 0.01
24 18 0.08
26 23 0.10
27 160 0.72
28 19 0.09
ACGTcount: A:0.30, C:0.09, G:0.19, T:0.41
Consensus pattern (27 bp):
TACAAACCAAGGGTATTTCGGTAATTT
Found at i:69438003 original size:54 final size:52
Alignment explanation
Indices: 69437739--69438044 Score: 181
Period size: 54 Copynumber: 5.8 Consensus size: 52
69437729 CAAGGGTGCA
* * * **
69437739 TTGGTAAATCTACAAGCCAAGGGTATTTCGGTAATTTTGCAAACCAATGGTATT
1 TTGGTAATTTTACAAACCAAGGGTATTTCGGTAATTTTGC-AATTAA-GGTATT
* * ** * * *
69437793 TTTGTAATTTT-CTTAATTAAGGGTATTTCGATAATTTTCCAAATTAGGGGTATT
1 TTGGTAATTTTAC-AAACCAAGGGTATTTCGGTAATTTTGC-AATTA-AGGTATT
*** * *
69437847 TTGGTAATTTTACAAATTGAGGGTATTT---TAATTTTACAAGTAGAGGGTATT
1 TTGGTAATTTTACAAACCAAGGGTATTTCGGTAATTTTGCAATTA-A-GGTATT
* * *** * * **
69437898 TCGATAATTTTACAGGTCGAGGGTATCTCGGTAATTTCACAAATTAGAGGTATT
1 TTGGTAATTTTACAAACCAAGGGTATTTCGGTAATTTTGC-AATTA-AGGTATT
*
69437952 TTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTGCTAATTGAAGGTATT
1 TTGGTAATTTTACAAACCAAGGGTATTTCGGTAATTTTGC-AATT-AAGGTATT
* ** * *
69438006 TTGTTAATTTTTGTAAACCAATGGTATTT-AGTAATTTTG
1 TTGGTAA-TTTTACAAACCAAGGGTATTTCGGTAATTTTG
69438045 TAAACCAAGG
Statistics
Matches: 200, Mismatches: 42, Indels: 20
0.76 0.16 0.08
Matches are distributed among these distances:
50 5 0.03
51 36 0.18
53 1 0.00
54 132 0.66
55 26 0.13
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.42
Consensus pattern (52 bp):
TTGGTAATTTTACAAACCAAGGGTATTTCGGTAATTTTGCAATTAAGGTATT
Found at i:69438118 original size:27 final size:27
Alignment explanation
Indices: 69438053--69438133 Score: 90
Period size: 27 Copynumber: 3.0 Consensus size: 27
69438043 TGTAAACCAA
* *
69438053 GGGTATTTCAGTATTTCTACCCTACAT
1 GGGTATTTCAGTAATTCTACCCTACAG
* * * *
69438080 GGGCATTCCAGTAATTCTATCCTATAG
1 GGGTATTTCAGTAATTCTACCCTACAG
* *
69438107 GGGTATTTCAGTAATACTAGCCTACAG
1 GGGTATTTCAGTAATTCTACCCTACAG
69438134 ATATGAGATT
Statistics
Matches: 43, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.35
Consensus pattern (27 bp):
GGGTATTTCAGTAATTCTACCCTACAG
Found at i:69441521 original size:47 final size:47
Alignment explanation
Indices: 69441464--69441948 Score: 765
Period size: 47 Copynumber: 10.3 Consensus size: 47
69441454 GTATGAGATA
*
69441464 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
69441511 TATATATGTGACAAGGCCTAATGACCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
69441558 TATATATGTGACAAGGCCTAATGGCCGATGTGATGGATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
69441605 TATATATGTGACAAGGCCTAATGGCCGATGTGATGGATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
69441652 TATATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
69441699 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
69441746 CATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
69441793 TATATATGTGACAAGGCCTAATGGCCCATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * *
69441840 CATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * *
69441887 TATATATGTGATAAGG-CTGAGTGGCCAATGTGATGGATGTGAAAGTG
1 TATATATGTGATAAGGCCT-AATGGCCGATGTGATGAATGTGAAAGTG
*
69441934 TATAAATGTGATAAG
1 TATATATGTGATAAG
69441949 TCCCGAAGGG
Statistics
Matches: 411, Mismatches: 26, Indels: 2
0.94 0.06 0.00
Matches are distributed among these distances:
46 1 0.00
47 410 1.00
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.28
Consensus pattern (47 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:69442125 original size:37 final size:37
Alignment explanation
Indices: 69442066--69442148 Score: 121
Period size: 37 Copynumber: 2.2 Consensus size: 37
69442056 CCGAGCTCTA
* *
69442066 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACCACGGGTGGAGATTATGTCCGGGT
* *
69442103 AAGACCCGATGGCCACGGGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACCACGGGTGGAGATTATGTCCGGGT
*
69442140 AAGCCCCGA
1 AAGACCCGA
69442149 ACTAAAGGTT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.23, C:0.23, G:0.34, T:0.20
Consensus pattern (37 bp):
AAGACCCGATGACCACGGGTGGAGATTATGTCCGGGT
Found at i:69450223 original size:127 final size:128
Alignment explanation
Indices: 69449997--69450256 Score: 441
Period size: 127 Copynumber: 2.0 Consensus size: 128
69449987 AGTAATTCGG
*
69449997 ATATGACCTACATTCTCTGCTAAGTTTGAAACATATGTATTTAATAGTATATATGTTCAGTTACC
1 ATATGACCTACATTCTCTGCTAAGTATGAAACATATGTATTTAATAGTATATATGTTCAGTTACC
* *
69450062 ATGACAAAGCATTTCTTTAAGTCATAAATGATAGTTTCATAAATGAACCATTACATGGTGTT-
66 ATGACAAAGCATTTCTTTAAGTCATAAAAGATAGTTTCAAAAATGAACCATTACATGGTGTTA
* * * *
69450124 ATATGACCTACGTTCTTTGCTAAGTATGAAACATATGTATTTAGTAGTATATATGTTCGGTTACC
1 ATATGACCTACATTCTCTGCTAAGTATGAAACATATGTATTTAATAGTATATATGTTCAGTTACC
*
69450189 ATGACAAAGCATTTCTTTAAGTTATAAAAGATAGTTTCAAAAATGAACCATTACATGGTGTTA
66 ATGACAAAGCATTTCTTTAAGTCATAAAAGATAGTTTCAAAAATGAACCATTACATGGTGTTA
69450252 ATATG
1 ATATG
69450257 CATAAATAAA
Statistics
Matches: 124, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
127 119 0.96
128 5 0.04
ACGTcount: A:0.35, C:0.13, G:0.15, T:0.37
Consensus pattern (128 bp):
ATATGACCTACATTCTCTGCTAAGTATGAAACATATGTATTTAATAGTATATATGTTCAGTTACC
ATGACAAAGCATTTCTTTAAGTCATAAAAGATAGTTTCAAAAATGAACCATTACATGGTGTTA
Found at i:69455137 original size:11 final size:11
Alignment explanation
Indices: 69455121--69455175 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
69455111 CATGATTGAT
69455121 ATGATATGCAC
1 ATGATATGCAC
*
69455132 ATGATATG--T
1 ATGATATGCAC
69455141 ATGATATGCAC
1 ATGATATGCAC
*
69455152 AT-ATATG--T
1 ATGATATGCAC
69455160 ATGATATGCAC
1 ATGATATGCAC
69455171 ATGAT
1 ATGAT
69455176 GTATTCATAA
Statistics
Matches: 35, Mismatches: 4, Indels: 10
0.71 0.08 0.20
Matches are distributed among these distances:
8 2 0.06
9 13 0.37
10 5 0.14
11 15 0.43
ACGTcount: A:0.36, C:0.11, G:0.18, T:0.35
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:69455159 original size:19 final size:20
Alignment explanation
Indices: 69455110--69455175 Score: 109
Period size: 20 Copynumber: 3.4 Consensus size: 20
69455100 ATTTTGATAT
69455110 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGATATGC
69455130 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
69455150 ACAT-ATATGTATGATATGC
1 ACATGATATGTATGATATGC
69455169 ACATGAT
1 ACATGAT
69455176 GTATTCATAA
Statistics
Matches: 44, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
19 19 0.43
20 23 0.52
21 2 0.05
ACGTcount: A:0.36, C:0.11, G:0.18, T:0.35
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:69455299 original size:25 final size:26
Alignment explanation
Indices: 69455225--69455322 Score: 146
Period size: 25 Copynumber: 3.8 Consensus size: 26
69455215 GAGGAAGTGC
69455225 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
69455251 AAAAAGGGCTTATACCCCAGTTTATTG
1 -AAAAGGGCTTATGCCCCAGTTTATTG
**
69455278 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
69455303 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
69455323 ATTAAAGAGG
Statistics
Matches: 67, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
25 32 0.48
26 10 0.15
27 25 0.37
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:69458235 original size:15 final size:15
Alignment explanation
Indices: 69458208--69458251 Score: 54
Period size: 14 Copynumber: 2.9 Consensus size: 15
69458198 TATAGTATCG
69458208 TATCTTGGGATTTCTC
1 TATCTT-GGATTTCTC
*
69458224 TATCTTGGATTTCTT
1 TATCTTGGATTTCTC
*
69458239 TA-CTTGGTTTTCT
1 TATCTTGGATTTCT
69458252 TGTTATCTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
14 10 0.38
15 10 0.38
16 6 0.23
ACGTcount: A:0.11, C:0.16, G:0.16, T:0.57
Consensus pattern (15 bp):
TATCTTGGATTTCTC
Found at i:69460980 original size:50 final size:50
Alignment explanation
Indices: 69460900--69461040 Score: 187
Period size: 50 Copynumber: 2.8 Consensus size: 50
69460890 TGATGCTAGG
* *
69460900 GATATATGAGAGCTAGAGTAAGAACATGTCTGGGACATGGCATCGGCAC-C
1 GATATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTC
* *
69460950 GATAGATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTC
1 GATATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
* * *
69461000 GATATACGAGAG-TCAGTGTAAGACCATGTTTGAGACATGGC
1 GATATATGAGAGCT-AGTGTAAGACCATGTCTGGGACATGGC
69461041 GTCGACTTTG
Statistics
Matches: 80, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
49 2 0.03
50 78 0.98
ACGTcount: A:0.30, C:0.18, G:0.30, T:0.22
Consensus pattern (50 bp):
GATATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
Found at i:69468865 original size:3 final size:3
Alignment explanation
Indices: 69468857--69468904 Score: 96
Period size: 3 Copynumber: 16.0 Consensus size: 3
69468847 ATTTGATCCT
69468857 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
69468905 AAGATTTAAT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:69470724 original size:23 final size:21
Alignment explanation
Indices: 69470684--69470726 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
69470674 CAAAAAAAAA
*
69470684 AAAAGAAAAAAAAGATAGAAG
1 AAAAGAAAAAAAAAATAGAAG
69470705 AAAAGAAAAAAACGAAATAGAA
1 AAAAGAAAAAAA--AAATAGAA
69470727 TACTTGTTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 12 0.63
23 7 0.37
ACGTcount: A:0.77, C:0.02, G:0.16, T:0.05
Consensus pattern (21 bp):
AAAAGAAAAAAAAAATAGAAG
Found at i:69473276 original size:21 final size:21
Alignment explanation
Indices: 69473235--69473276 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
69473225 AATCCCCACA
*
69473235 TGGTGTGTTGGTAGGTATGGG
1 TGGTGTGTTGGTAGATATGGG
69473256 TGGTGTGTTGGTTAGAT-TGGG
1 TGGTGTGTTGG-TAGATATGGG
69473277 GTGGGTTACA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.10, C:0.00, G:0.50, T:0.40
Consensus pattern (21 bp):
TGGTGTGTTGGTAGATATGGG
Found at i:69474342 original size:165 final size:165
Alignment explanation
Indices: 69474070--69474396 Score: 492
Period size: 165 Copynumber: 2.0 Consensus size: 165
69474060 CCCAAAAGTG
*
69474070 TAGCACATAGCTAACACTCTCCAACACACCAACATATCTCAGTGAATAAAGCTTAGCTAACATTC
1 TAGCACATAGCTAACACTCTCCAACACACCAACATATCCCAGTGAATAAAGCTTAGCTAACATTC
* * * * *
69474135 CCTTATCTCTTCAAATTGTCTCAAGGCCTGGATGCCCAAATCACAAAACACAAGGGTGAGGACTC
66 CCTTATCTCTCCAAACTGTCCCAAGGCCTGAATGCCCAAATCACAAAACACAAGGATGAGGACTC
*
69474200 ACAATCCTATGGCATGCCAACAATATCCAACGATT
131 ACAATCCTATGGCATGCCAACAATAACCAACGATT
* * * * ** *
69474235 TAGCACATAGTTAACACTCTCCAACATACCAATATATCCCTGTGAATGGAGCTTAGCTCACATTC
1 TAGCACATAGCTAACACTCTCCAACACACCAACATATCCCAGTGAATAAAGCTTAGCTAACATTC
**
69474300 CCTTATCTCTCCAAACTGTCCCGGGGCCTGAATGCCCAAATCACAAAACACAAGGATGAGGACTC
66 CCTTATCTCTCCAAACTGTCCCAAGGCCTGAATGCCCAAATCACAAAACACAAGGATGAGGACTC
* *
69474365 ACAATTCTATGGCATGCCAACTATAACCAACG
131 ACAATCCTATGGCATGCCAACAATAACCAACG
69474397 GTTTCAAGAG
Statistics
Matches: 144, Mismatches: 18, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
165 144 1.00
ACGTcount: A:0.34, C:0.29, G:0.14, T:0.23
Consensus pattern (165 bp):
TAGCACATAGCTAACACTCTCCAACACACCAACATATCCCAGTGAATAAAGCTTAGCTAACATTC
CCTTATCTCTCCAAACTGTCCCAAGGCCTGAATGCCCAAATCACAAAACACAAGGATGAGGACTC
ACAATCCTATGGCATGCCAACAATAACCAACGATT
Found at i:69480554 original size:10 final size:10
Alignment explanation
Indices: 69480541--69480566 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
69480531 AAAAACATTA
69480541 AAAACAGGGT
1 AAAACAGGGT
69480551 AAAACAGGGT
1 AAAACAGGGT
69480561 AAAACA
1 AAAACA
69480567 ATCATTCCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.58, C:0.12, G:0.23, T:0.08
Consensus pattern (10 bp):
AAAACAGGGT
Found at i:69497423 original size:14 final size:14
Alignment explanation
Indices: 69497406--69497452 Score: 53
Period size: 14 Copynumber: 3.5 Consensus size: 14
69497396 AATATATAGG
69497406 ATTTTTCCTATATA
1 ATTTTTCCTATATA
* **
69497420 ATTTGT-C-ATAGG
1 ATTTTTCCTATATA
69497432 ATTTTTCCTATATA
1 ATTTTTCCTATATA
69497446 ATTTTTC
1 ATTTTTC
69497453 ACCTTTTTAC
Statistics
Matches: 25, Mismatches: 6, Indels: 4
0.71 0.17 0.11
Matches are distributed among these distances:
12 8 0.32
13 2 0.08
14 15 0.60
ACGTcount: A:0.26, C:0.13, G:0.06, T:0.55
Consensus pattern (14 bp):
ATTTTTCCTATATA
Found at i:69497702 original size:13 final size:13
Alignment explanation
Indices: 69497675--69497716 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
69497665 ATAAAATATA
69497675 AATTTATATTTAAT
1 AATTTATA-TTAAT
69497689 AATTTATATTAAT
1 AATTTATATTAAT
*
69497702 ATATTT-CATTAAT
1 A-ATTTATATTAAT
69497715 AA
1 AA
69497717 ATTGGGTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
12 1 0.04
13 13 0.50
14 12 0.46
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (13 bp):
AATTTATATTAAT
Found at i:69499632 original size:23 final size:23
Alignment explanation
Indices: 69499605--69499650 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
69499595 CATAAAGAGG
69499605 GAGTTTTTTTTATAACTAAAGGA
1 GAGTTTTTTTTATAACTAAAGGA
69499628 GAGTTTTTTTTATAACTAAAGGA
1 GAGTTTTTTTTATAACTAAAGGA
69499651 ATAAATTAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.35, C:0.04, G:0.17, T:0.43
Consensus pattern (23 bp):
GAGTTTTTTTTATAACTAAAGGA
Found at i:69506697 original size:47 final size:47
Alignment explanation
Indices: 69506625--69506974 Score: 493
Period size: 47 Copynumber: 7.3 Consensus size: 47
69506615 CCCTTCGGGA
* * * * * * *
69506625 CTTATCACATTTATACACTTCCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * **
69506672 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATCCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
69506719 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
69506766 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
69506815 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGC
*
69506864 CTTATCACATATATATACACTTTCGCATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
69506913 CTTATCTCATATATGCACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
69506960 CTTATCACATATATA
1 CTTATCACATATATA
69506975 TATCTCATAC
Statistics
Matches: 276, Mismatches: 21, Indels: 12
0.89 0.07 0.04
Matches are distributed among these distances:
47 144 0.52
49 126 0.46
51 6 0.02
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:69506799 original size:49 final size:49
Alignment explanation
Indices: 69506625--69506976 Score: 495
Period size: 49 Copynumber: 7.3 Consensus size: 49
69506615 CCCTTCGGGA
* * * * * *
69506625 CTTATCACAT-T-TATACACTTCCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * **
69506672 CCTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATCCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
69506719 CTTATCAC--ATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
69506766 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
69506815 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
69506864 CTTATCACATATATATACACTTTCGCATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
69506913 CTTATCTC--ATATATGCACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
69506960 CTTATCACATATATATA
1 CTTATCACATATATATA
69506977 TCTCATACAT
Statistics
Matches: 277, Mismatches: 22, Indels: 10
0.90 0.07 0.03
Matches are distributed among these distances:
46 1 0.00
47 130 0.47
49 146 0.53
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:69506993 original size:98 final size:96
Alignment explanation
Indices: 69506625--69506976 Score: 519
Period size: 96 Copynumber: 3.7 Consensus size: 96
69506615 CCCTTCGGGA
* * * * * * * *
69506625 CTTATCACATTTATACACTTCCACATCCATCACGTTGGCCACTCGGCCCTATCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
* **
69506688 ACTTTCACATTCATCACATTGGCCATCCGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
69506719 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
69506784 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
69506815 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
*
69506880 ACACTTTCGCATTCATCACATCGGCCATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
69506913 CTTATCTCATATATGCACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
69506977 TCTCATACAT
Statistics
Matches: 236, Mismatches: 18, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
94 46 0.19
96 97 0.41
98 93 0.39
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.32
Consensus pattern (96 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:69512581 original size:55 final size:55
Alignment explanation
Indices: 69512510--69512620 Score: 222
Period size: 55 Copynumber: 2.0 Consensus size: 55
69512500 ATTGATCCTT
69512510 CCAAAATGTCAGCAATGATTATCTACAAAACAATCCACAAGAATTGATAAGCTTA
1 CCAAAATGTCAGCAATGATTATCTACAAAACAATCCACAAGAATTGATAAGCTTA
69512565 CCAAAATGTCAGCAATGATTATCTACAAAACAATCCACAAGAATTGATAAGCTTA
1 CCAAAATGTCAGCAATGATTATCTACAAAACAATCCACAAGAATTGATAAGCTTA
69512620 C
1 C
69512621 ATAACTTAGT
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 56 1.00
ACGTcount: A:0.45, C:0.21, G:0.11, T:0.23
Consensus pattern (55 bp):
CCAAAATGTCAGCAATGATTATCTACAAAACAATCCACAAGAATTGATAAGCTTA
Found at i:69512728 original size:40 final size:41
Alignment explanation
Indices: 69512684--69512934 Score: 235
Period size: 40 Copynumber: 6.2 Consensus size: 41
69512674 AGTATAGACA
* * * *
69512684 GGGCACATATGTGCGTCTAGTGGTA-TAGAAGTACAAATAG
1 GGGCACGTATGTGCATTTAGGGGTACTAGAAGTACAAATAG
* * * *
69512724 GGGCACATATGTGCATTTAGGGGTA-AAAAAGAACAAATAG
1 GGGCACGTATGTGCATTTAGGGGTACTAGAAGTACAAATAG
* * * *
69512764 GGGCATGTATGTTCTTTTAGGGGGTACCA-AAGTACAAATAG
1 GGGCACGTATGTGCATTTA-GGGGTACTAGAAGTACAAATAG
* *
69512805 GGGTACGTATGTGCATTTAGGGGTACT-GAAGTACAAACAG
1 GGGCACGTATGTGCATTTAGGGGTACTAGAAGTACAAATAG
* * * *
69512845 GGGCATGTATGTGCATTTAGGGGTACCA-AAGTACAAACAA
1 GGGCACGTATGTGCATTTAGGGGTACTAGAAGTACAAATAG
* * * * *
69512885 GGGCATGTATGTCCATTCAGGGGTA-TTGATGTACAAATAG
1 GGGCACGTATGTGCATTTAGGGGTACTAGAAGTACAAATAG
*
69512925 GGGCAAGTAT
1 GGGCACGTAT
69512935 TATGTTCATT
Statistics
Matches: 176, Mismatches: 30, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
40 143 0.81
41 32 0.18
42 1 0.01
ACGTcount: A:0.33, C:0.12, G:0.30, T:0.25
Consensus pattern (41 bp):
GGGCACGTATGTGCATTTAGGGGTACTAGAAGTACAAATAG
Found at i:69512802 original size:81 final size:80
Alignment explanation
Indices: 69512712--69512909 Score: 261
Period size: 81 Copynumber: 2.5 Consensus size: 80
69512702 AGTGGTATAG
* * *
69512712 AAGTACAAATAGGGGCACATATGTGCATTTAGGGGTAAAAAAGAACAAATAGGGGCATGTATGTT
1 AAGTACAAATAGGGGCACGTATGTGCATTTAGGGGTAAAAAAGAACAAACAGGGGCATGTATGTG
*
69512777 CTTTTAGGGGGTACCA
66 CATTTA-GGGGTACCA
* *** *
69512793 AAGTACAAATAGGGGTACGTATGTGCATTTAGGGGTACTGAAGTACAAACAGGGGCATGTATGTG
1 AAGTACAAATAGGGGCACGTATGTGCATTTAGGGGTAAAAAAGAACAAACAGGGGCATGTATGTG
69512858 CATTTAGGGGTACCA
66 CATTTAGGGGTACCA
* * * * *
69512873 AAGTACAAACAAGGGCATGTATGTCCATTCAGGGGTA
1 AAGTACAAATAGGGGCACGTATGTGCATTTAGGGGTA
69512910 TTGATGTACA
Statistics
Matches: 102, Mismatches: 15, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
80 40 0.39
81 62 0.61
ACGTcount: A:0.34, C:0.13, G:0.29, T:0.24
Consensus pattern (80 bp):
AAGTACAAATAGGGGCACGTATGTGCATTTAGGGGTAAAAAAGAACAAACAGGGGCATGTATGTG
CATTTAGGGGTACCA
Found at i:69512825 original size:20 final size:20
Alignment explanation
Indices: 69512802--69512870 Score: 59
Period size: 20 Copynumber: 3.5 Consensus size: 20
69512792 AAAGTACAAA
69512802 TAGGGGTACGTATGTGCATT
1 TAGGGGTACGTATGTGCATT
* * **
69512822 TAGGGGTAC-TGAAGTACAAA
1 TAGGGGTACGT-ATGTGCATT
* * *
69512842 CAGGGGCATGTATGTGCATT
1 TAGGGGTACGTATGTGCATT
69512862 TAGGGGTAC
1 TAGGGGTAC
69512871 CAAAGTACAA
Statistics
Matches: 33, Mismatches: 14, Indels: 4
0.65 0.27 0.08
Matches are distributed among these distances:
19 1 0.03
20 31 0.94
21 1 0.03
ACGTcount: A:0.26, C:0.12, G:0.35, T:0.28
Consensus pattern (20 bp):
TAGGGGTACGTATGTGCATT
Found at i:69512919 original size:80 final size:81
Alignment explanation
Indices: 69512712--69512934 Score: 250
Period size: 81 Copynumber: 2.8 Consensus size: 81
69512702 AGTGGTATAG
* * * * * *** * *
69512712 AAGTACAAATAGGGGCACATATGTGCATTTAGGGGTAAAAAAGAACAAATAGGGGCATGTATGTT
1 AAGTACAAACAAGGGCACGTATGTCCATTCAGGGGTACTGAAGTACAAATAGGGGCATGTATGTG
*
69512777 CTTTTAGGGGGTACCA
66 CATTTAGGGGGTACCA
* * * * * *
69512793 AAGTACAAATAGGGGTACGTATGTGCATTTAGGGGTACTGAAGTACAAACAGGGGCATGTATGTG
1 AAGTACAAACAAGGGCACGTATGTCCATTCAGGGGTACTGAAGTACAAATAGGGGCATGTATGTG
69512858 CATTTA-GGGGTACCA
66 CATTTAGGGGGTACCA
* * * *
69512873 AAGTACAAACAAGGGCATGTATGTCCATTCAGGGGTATTGATGTACAAATAGGGGCAAGTAT
1 AAGTACAAACAAGGGCACGTATGTCCATTCAGGGGTACTGAAGTACAAATAGGGGCATGTAT
69512935 TATGTTCATT
Statistics
Matches: 123, Mismatches: 19, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
80 61 0.50
81 62 0.50
ACGTcount: A:0.34, C:0.12, G:0.29, T:0.25
Consensus pattern (81 bp):
AAGTACAAACAAGGGCACGTATGTCCATTCAGGGGTACTGAAGTACAAATAGGGGCATGTATGTG
CATTTAGGGGGTACCA
Found at i:69521889 original size:27 final size:27
Alignment explanation
Indices: 69521858--69521939 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
69521848 TACCTAGACC
*
69521858 CCCTATTTGATAAAATGATTGTTTTAG
1 CCCTATATGATAAAATGATTGTTTTAG
* *
69521885 CCCTACATGATAAAATGACTGTTTT-G
1 CCCTATATGATAAAATGATTGTTTTAG
* **
69521911 CCTCTATGTGAT-GTATGATTGTATTTAG
1 CC-CTATATGATAAAATGATTGT-TTTAG
69521939 C
1 C
69521940 ATGTTATTTT
Statistics
Matches: 44, Mismatches: 8, Indels: 5
0.77 0.14 0.09
Matches are distributed among these distances:
26 10 0.23
27 32 0.73
28 2 0.05
ACGTcount: A:0.27, C:0.15, G:0.17, T:0.41
Consensus pattern (27 bp):
CCCTATATGATAAAATGATTGTTTTAG
Found at i:69523066 original size:25 final size:25
Alignment explanation
Indices: 69523024--69523082 Score: 73
Period size: 25 Copynumber: 2.4 Consensus size: 25
69523014 CATGGGCGTT
* * **
69523024 TGACATGACTTGGTACACGGGTGTG
1 TGACATGACGTGGCACACGGGCATG
*
69523049 TGACATGGCGTGGCACACGGGCATG
1 TGACATGACGTGGCACACGGGCATG
69523074 TGACATGAC
1 TGACATGAC
69523083 CGTGTGACCC
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.22, C:0.20, G:0.36, T:0.22
Consensus pattern (25 bp):
TGACATGACGTGGCACACGGGCATG
Found at i:69523357 original size:33 final size:31
Alignment explanation
Indices: 69523295--69523357 Score: 74
Period size: 33 Copynumber: 2.0 Consensus size: 31
69523285 AGGACAATAT
*
69523295 ACATGTGAATGAATGATTTATGATATTATTA
1 ACATGTGAATGAATGATTTATAATATTATTA
*
69523326 ACATGTTGAATGATATGATGTT-TAATTTTATT
1 ACATG-TGAATGA-ATGAT-TTATAATATTATT
69523358 TGATTGTACG
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
31 5 0.19
32 7 0.26
33 13 0.48
34 2 0.07
ACGTcount: A:0.35, C:0.03, G:0.16, T:0.46
Consensus pattern (31 bp):
ACATGTGAATGAATGATTTATAATATTATTA
Found at i:69531580 original size:27 final size:27
Alignment explanation
Indices: 69530943--69531579 Score: 764
Period size: 27 Copynumber: 23.6 Consensus size: 27
69530933 AAAGTACTCC
69530943 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
69530970 C-AGTTTATAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* ** *
69530997 TGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
69531024 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
69531051 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
69531078 CGATTTACAGAATTACCGTTTTACGCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
69531105 C-AGTTTACAGAATTATTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* * **
69531132 TGATTTACAAAATTAATGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
69531159 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** * *
69531186 CGATTTGTAAAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
69531213 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
69531240 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
69531267 CGATTTATAGAATTACCATTTTACCC-
1 CGATTTACAGAATTACCGTTTTACCCT
* * * *
69531293 CTAATTTACATAATTACCATTTTACCCC
1 C-GATTTACAGAATTACCGTTTTACCCT
* *
69531321 CGATTTACATAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
69531348 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
69531375 CGATTTATAGAATTACCGTTTTACCC-
1 CGATTTACAGAATTACCGTTTTACCCT
* * * *
69531401 CTAATTTACATAATTACCATTTTACCCC
1 C-GATTTACAGAATTACCGTTTTACCCT
* *
69531429 CGATTTACATAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
69531456 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
69531483 CGATTTACAAAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
69531510 CGATTTATAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
69531537 TGATTCACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
69531564 CGATTTACAAAATTAC
1 CGATTTACAGAATTAC
69531580 TAAAATACCC
Statistics
Matches: 527, Mismatches: 71, Indels: 24
0.85 0.11 0.04
Matches are distributed among these distances:
26 6 0.01
27 515 0.98
28 6 0.01
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.40
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:69532921 original size:9 final size:9
Alignment explanation
Indices: 69532909--69532965 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
69532899 TTTGATAAAC
69532909 ATGATATGT
1 ATGATATGT
*
69532918 ATGATATGCAC
1 ATGATATG--T
*
69532929 ATGACATGT
1 ATGATATGT
*
69532938 ATGATATGCAC
1 ATGATATG--T
69532949 ATGATATGT
1 ATGATATGT
69532958 ATGATATG
1 ATGATATG
69532966 CACATGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:69532932 original size:20 final size:20
Alignment explanation
Indices: 69532907--69532977 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
69532897 ATTTTGATAA
69532907 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
69532927 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
69532947 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
69532967 ACATGAGATGT
1 ACATGATATGT
69532978 TCATAAATGC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:69532954 original size:11 final size:11
Alignment explanation
Indices: 69532918--69532972 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
69532908 CATGATATGT
69532918 ATGATATGCAC
1 ATGATATGCAC
* *
69532929 ATGACATG--T
1 ATGATATGCAC
69532938 ATGATATGCAC
1 ATGATATGCAC
*
69532949 ATGATATG--T
1 ATGATATGCAC
69532958 ATGATATGCAC
1 ATGATATGCAC
69532969 ATGA
1 ATGA
69532973 GATGTTCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:69533079 original size:24 final size:24
Alignment explanation
Indices: 69533022--69533234 Score: 301
Period size: 24 Copynumber: 9.0 Consensus size: 24
69533012 GGAGGAAGTG
69533022 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
69533046 -TAAAGGGCTTATGCCCTAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
69533069 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
69533093 CAAAAGGGCTTATG-CCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
69533116 -TAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
69533139 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
69533163 -TAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
69533186 TAAAAGGGCTTTTGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
69533210 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 CAAAAG-GGCTTATGCC-CCAGTTAT
69533235 ATGATAAAGC
Statistics
Matches: 172, Mismatches: 11, Indels: 11
0.89 0.06 0.06
Matches are distributed among these distances:
22 12 0.07
23 61 0.35
24 88 0.51
25 11 0.06
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:69533091 original size:47 final size:47
Alignment explanation
Indices: 69533023--69533234 Score: 304
Period size: 47 Copynumber: 4.5 Consensus size: 47
69533013 GAGGAAGTGC
* *
69533023 AAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCTAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
69533069 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATG-CCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
*
69533116 TAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
* * *
69533163 TAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTA-T
*
69533211 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
69533235 ATGATAAAGC
Statistics
Matches: 153, Mismatches: 7, Indels: 8
0.91 0.04 0.05
Matches are distributed among these distances:
46 36 0.24
47 84 0.55
48 22 0.14
49 11 0.07
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
Found at i:69533463 original size:31 final size:31
Alignment explanation
Indices: 69533428--69533491 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
69533418 CGTTTACCGT
*
69533428 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
69533459 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
69533490 AA
1 AA
69533492 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:69534464 original size:26 final size:26
Alignment explanation
Indices: 69534428--69534482 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
69534418 ACGCTTGAGA
69534428 GTATGTTTCTACTGAAGAAATCATGT
1 GTATGTTTCTACTGAAGAAATCATGT
69534454 GTATGTTTCTACTGAAGAAATCATGT
1 GTATGTTTCTACTGAAGAAATCATGT
69534480 GTA
1 GTA
69534483 AGCAGTTTGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.31, C:0.11, G:0.20, T:0.38
Consensus pattern (26 bp):
GTATGTTTCTACTGAAGAAATCATGT
Found at i:69539792 original size:49 final size:49
Alignment explanation
Indices: 69539732--69539971 Score: 444
Period size: 49 Copynumber: 4.9 Consensus size: 49
69539722 GTATGAGATA
*
69539732 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
69539781 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAAGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
69539830 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
69539879 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGAGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
69539928 TATATATATGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
69539972 TATATGTGGG
Statistics
Matches: 185, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 185 1.00
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
Found at i:69540112 original size:37 final size:37
Alignment explanation
Indices: 69540058--69540148 Score: 164
Period size: 37 Copynumber: 2.4 Consensus size: 37
69540048 AACTTGGAAA
*
69540058 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGTAAGACCCGATGACTACGTGTGGAGAT
69540096 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
69540133 TATGTCCGGGTAAGAC
1 TATGTCCGGGTAAGAC
69540149 TTCATAATAA
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
37 48 0.92
38 4 0.08
ACGTcount: A:0.23, C:0.19, G:0.33, T:0.25
Consensus pattern (37 bp):
TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
Found at i:69541904 original size:24 final size:24
Alignment explanation
Indices: 69541877--69541924 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
69541867 GAATTCGAAG
69541877 GTAATTGGGAGAAATATTTGCAGC
1 GTAATTGGGAGAAATATTTGCAGC
69541901 GTAATTGGGAGAAATATTTGCAGC
1 GTAATTGGGAGAAATATTTGCAGC
69541925 TGGTTGAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (24 bp):
GTAATTGGGAGAAATATTTGCAGC
Found at i:69543502 original size:28 final size:29
Alignment explanation
Indices: 69543470--69543583 Score: 128
Period size: 28 Copynumber: 4.0 Consensus size: 29
69543460 TACCTGTATC
* *
69543470 TGGCCCATTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
*
69543498 TGGCCCATTAGGCCCAAATCAC-TTGTATA
1 TGGCCCATTAGGCCCAAATCACATT-CATA
*
69543527 TGG-CCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
** *
69543555 TGGCCGGTTAGGCCC-AGTCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
69543583 T
1 T
69543584 TCATGCTCAC
Statistics
Matches: 75, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
28 53 0.71
29 22 0.29
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.28
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTCATA
Found at i:69550914 original size:17 final size:18
Alignment explanation
Indices: 69550881--69550914 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
69550871 TTTAAAGAAG
69550881 GGTTTTCAATGAAAACAA
1 GGTTTTCAATGAAAACAA
*
69550899 GGTTTTCGAT-AAAACA
1 GGTTTTCAATGAAAACA
69550915 CTTCAATGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.41, C:0.12, G:0.18, T:0.29
Consensus pattern (18 bp):
GGTTTTCAATGAAAACAA
Found at i:69550951 original size:26 final size:26
Alignment explanation
Indices: 69550915--69550967 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
69550905 CGATAAAACA
69550915 CTTCAATGTGACACGCTGGATCTGGC
1 CTTCAATGTGACACGCTGGATCTGGC
69550941 CTTCAATGTGACACGCTGGATCTGGC
1 CTTCAATGTGACACGCTGGATCTGGC
69550967 C
1 C
69550968 ATAACATCTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.19, C:0.28, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTCAATGTGACACGCTGGATCTGGC
Done.