Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 221 of 318
Found at i:69552885 original size:30 final size:30
Alignment explanation
Indices: 69552849--69552949 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
69552839 GACAAGATTG
* * *
69552849 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
69552879 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
69552907 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
69552936 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
69552950 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:69552961 original size:29 final size:28
Alignment explanation
Indices: 69552878--69552953 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
69552868 AAAATTGTAC
* *
69552878 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
69552906 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
69552935 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
69552954 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:69560522 original size:16 final size:17
Alignment explanation
Indices: 69560501--69560533 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
69560491 AATTGTGTTT
*
69560501 AATGAATTG-ATGTGTA
1 AATGAAATGTATGTGTA
69560517 AATGAAATGTATGTGTA
1 AATGAAATGTATGTGTA
69560534 TGGAATGATG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.39, C:0.00, G:0.24, T:0.36
Consensus pattern (17 bp):
AATGAAATGTATGTGTA
Found at i:69560703 original size:28 final size:28
Alignment explanation
Indices: 69560634--69560732 Score: 101
Period size: 28 Copynumber: 3.5 Consensus size: 28
69560624 GACAAGATTG
* * * *
69560634 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
*
69560664 GCACTAAGTGTGCGAGTTTGATTCTATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
* **
69560692 GCACTAAGTGTGCGAG-CTGAAAATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
69560719 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
69560733 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 21 0.34
28 22 0.36
30 18 0.30
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.28
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:69560726 original size:27 final size:28
Alignment explanation
Indices: 69560663--69560732 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
69560653 AAAATTGTAC
* ***
69560663 AGCACTAAGTGTGCGAGTTTGATTCTAT
1 AGCACTAAGTGTGCGAGTCTGAAAATAT
69560691 AGCACTAAGTGTGCGAG-CTGAAAATAT
1 AGCACTAAGTGTGCGAGTCTGAAAATAT
69560718 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
69560733 GATTCACTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 21 0.55
28 17 0.45
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.27
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGAAAATAT
Found at i:69563427 original size:39 final size:39
Alignment explanation
Indices: 69563373--69563570 Score: 335
Period size: 39 Copynumber: 5.1 Consensus size: 39
69563363 TGTGTATGAA
*
69563373 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
*
69563412 TGTGCTAGTTGTGATATCCGGGCTAAG-CCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
69563450 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
69563489 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
69563528 TGTGCGAGTTGTGATATCCAGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
69563568 TGT
1 TGT
69563571 ACGGGTTACC
Statistics
Matches: 151, Mismatches: 6, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
38 37 0.25
39 100 0.66
40 14 0.09
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.26
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:69563500 original size:77 final size:78
Alignment explanation
Indices: 69563373--69563570 Score: 335
Period size: 77 Copynumber: 2.5 Consensus size: 78
69563363 TGTGTATGAA
* *
69563373 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCTAGTTGTGATATCCGGGCTAA
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGCTAA
69563438 G-CCGAAGGCAAT
66 GCCCGAAGGCAAT
69563450 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGCTAA
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGCTAA
69563515 GCCCGAAGGCAAT
66 GCCCGAAGGCAAT
* * *
69563528 TGTGCGAGTTGTGATATCCAGGTTAAGTCCCGAAGGCATTTGT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAATTGT
69563571 ACGGGTTACC
Statistics
Matches: 114, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
77 64 0.56
78 36 0.32
79 14 0.12
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.26
Consensus pattern (78 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGCTAA
GCCCGAAGGCAAT
Found at i:69572702 original size:29 final size:29
Alignment explanation
Indices: 69572670--69572742 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
69572660 CTTCGAGCTC
*
69572670 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
69572699 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
69572728 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
69572743 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:69579159 original size:28 final size:28
Alignment explanation
Indices: 69579127--69579196 Score: 90
Period size: 28 Copynumber: 2.5 Consensus size: 28
69579117 ATAGTAAGTC
69579127 CGCACACTTAGTGCT-TA-ATAGTCAAAAT
1 CGCACACTTAGTGCTATACA-A-TCAAAAT
* *
69579155 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAAAT
69579183 CGCACACTTAGTGC
1 CGCACACTTAGTGC
69579197 CAATCTCATT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
28 34 0.89
29 3 0.08
30 1 0.03
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAAAT
Found at i:69583734 original size:17 final size:17
Alignment explanation
Indices: 69583684--69583727 Score: 79
Period size: 17 Copynumber: 2.5 Consensus size: 17
69583674 TTTATTCTAC
69583684 TAGCTAAAGGTGTAAAA
1 TAGCTAAAGGTGTAAAA
69583701 TAGCTAAAGGTGTAAAA
1 TAGCTAAAGGTGTAAAA
69583718 TAGCATAAAG
1 TAGC-TAAAG
69583728 TGCAAAAGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 21 0.81
18 5 0.19
ACGTcount: A:0.48, C:0.07, G:0.23, T:0.23
Consensus pattern (17 bp):
TAGCTAAAGGTGTAAAA
Found at i:69585626 original size:27 final size:27
Alignment explanation
Indices: 69585568--69585657 Score: 110
Period size: 28 Copynumber: 3.2 Consensus size: 27
69585558 AGGAAGCGTC
69585568 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
69585596 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
*
69585623 CTGGTGGCACTGCCACAAAATACCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
69585652 CTGGTG
1 CTGGTG
69585658 ACTCTGTCAC
Statistics
Matches: 54, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
27 23 0.43
28 24 0.44
29 7 0.13
ACGTcount: A:0.20, C:0.26, G:0.23, T:0.31
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:69585676 original size:55 final size:56
Alignment explanation
Indices: 69585568--69585682 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 56
69585558 AGGAAGCGTC
* * *
69585568 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATACCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
69585623 CTGGTGGC-ACTGCCACAAAATACCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATACCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
69585679 CTGG
1 CTGG
69585683 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.57
56 21 0.41
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.34
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATACCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:69586774 original size:11 final size:10
Alignment explanation
Indices: 69586746--69586779 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
69586736 AGCCTGTAAG
69586746 TATTCTGAAT
1 TATTCTGAAT
*
69586756 TTTTCTGAAT
1 TATTCTGAAT
69586766 ATATTCTGAAT
1 -TATTCTGAAT
69586777 TAT
1 TAT
69586780 CTGTCTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:69593377 original size:48 final size:48
Alignment explanation
Indices: 69593319--69593708 Score: 584
Period size: 48 Copynumber: 8.0 Consensus size: 48
69593309 TTGATGCATA
* *
69593319 AGATATGTATACGTGGTATAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
69593367 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
69593415 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
69593463 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
* * * *
69593511 AGATATGTATATGTGGTAAAACTGAATGGTTAATGTGAAATATATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG----A-A-ATATGTATG
69593565 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
* * * *
69593613 AGATATGCATATATGGTAAAGCCGAATGG-TCAGTGTGAAATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATG
* *
69593663 AGATATGTATATGTGGTAAAGCTGAATGGCTAGTGTGAAATATGTA
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
69593709 GGCGATGTGT
Statistics
Matches: 314, Mismatches: 18, Indels: 20
0.89 0.05 0.06
Matches are distributed among these distances:
47 1 0.00
48 222 0.71
49 5 0.02
50 41 0.13
51 1 0.00
52 1 0.00
53 1 0.00
54 42 0.13
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.32
Consensus pattern (48 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
Found at i:69593612 original size:150 final size:149
Alignment explanation
Indices: 69593319--69593705 Score: 597
Period size: 150 Copynumber: 2.6 Consensus size: 149
69593309 TTGATGCATA
* *
69593319 AGATATGTATACGTGGTATAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
* *
69593384 AAAGCCGAATGGCTAATGTG----A-AATATGTATGAGATATGTATATGTGGTAAAGCCGAATGG
66 AAAGCTGAATGGCTAATGTGAAATATAATATATATGAGATATGTATATGTGGTAAAGCCGAATGG
69593444 CTAATGTGAAATATGTATG
131 CTAATGTGAAATATGTATG
69593463 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
* *
69593528 AAAACTGAATGGTTAATGTGAAATATATATATATATGAGATATGTATATGTGGTAAAGCCGAATG
66 AAAGCTGAATGGCTAATGTGAAATATA-ATATATATGAGATATGTATATGTGGTAAAGCCGAATG
69593593 GCTAATGTGAAATATGTATG
130 GCTAATGTGAAATATGTATG
* * * *
69593613 AGATATGCATATATGGTAAAGCCGAATGG-TCAGTGTGAAATATATATATGAGATATGTATATGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATGTATATGT
*
69593677 GGTAAAGCTGAATGGCTAGTGTGAAATAT
63 GGTAAAGCTGAATGGCTAATGTGAAATAT
69593706 GTAGGCGATG
Statistics
Matches: 221, Mismatches: 13, Indels: 10
0.91 0.05 0.04
Matches are distributed among these distances:
144 80 0.36
148 1 0.00
149 2 0.01
150 88 0.40
151 2 0.01
152 48 0.22
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.32
Consensus pattern (149 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
AAAGCTGAATGGCTAATGTGAAATATAATATATATGAGATATGTATATGTGGTAAAGCCGAATGG
CTAATGTGAAATATGTATG
Found at i:69593963 original size:37 final size:37
Alignment explanation
Indices: 69593855--69593963 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
69593845 GGAAATATAT
* *
69593855 TCCGGGTAAGACCCGATGACTACGTGTGGTGATTGTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
69593892 TCCGGGTAAGACCCGATGACTACATGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
69593929 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
69593964 CATCTGAGCT
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.22, C:0.19, G:0.31, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:69595896 original size:12 final size:13
Alignment explanation
Indices: 69595868--69595900 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
69595858 TTATTTCATT
69595868 TTCTCCATCTACC
1 TTCTCCATCTACC
*
69595881 TTCTCC-TCTTCC
1 TTCTCCATCTACC
69595893 TTCTCCAT
1 TTCTCCAT
69595901 ATCCGAACCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.09, C:0.45, G:0.00, T:0.45
Consensus pattern (13 bp):
TTCTCCATCTACC
Found at i:69597168 original size:27 final size:28
Alignment explanation
Indices: 69597110--69597199 Score: 103
Period size: 27 Copynumber: 3.2 Consensus size: 28
69597100 AGGAAGCGTC
* *
69597110 CTGGTGGCTA-TGCCACGAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAAATATCTGTT
* *
69597138 CTGGTGGCCCTGCCAC-ATATATCTGTT
1 CTGGTGGCACTGCCACAAAATATCTGTT
*
69597165 CTGGTGGCACTGCCACAAAATACCTGTAT
1 CTGGTGGCACTGCCACAAAATATCTGT-T
69597194 CTGGTG
1 CTGGTG
69597200 ACTCTGTCAC
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
27 24 0.45
28 22 0.42
29 7 0.13
ACGTcount: A:0.19, C:0.26, G:0.24, T:0.31
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAAATATCTGTT
Found at i:69597218 original size:55 final size:56
Alignment explanation
Indices: 69597110--69597224 Score: 128
Period size: 55 Copynumber: 2.1 Consensus size: 56
69597100 AGGAAGCGTC
* * * *
69597110 CTGGTGGCTATGCCACGAATTATCTGTTCTGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATACCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
69597165 CTGGTGGC-ACTGCCACAAAATACCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATACCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
69597221 CTGG
1 CTGG
69597225 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
54 1 0.02
55 28 0.56
56 21 0.42
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.34
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATACCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:69606949 original size:28 final size:28
Alignment explanation
Indices: 69606888--69606985 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
69606878 TCACAAATTG
** * *
69606888 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
69606917 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
69606945 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
69606973 GCACTAAGTGTGC
1 GCACTAAGTGTGC
69606986 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:69611110 original size:39 final size:39
Alignment explanation
Indices: 69611056--69611246 Score: 310
Period size: 39 Copynumber: 4.9 Consensus size: 39
69611046 AGTGTTCGAG
69611056 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
69611095 TGATACCCGGGCTAAGCCCGAAGGCAATTGTGTGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
69611134 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* * *
69611173 TGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
69611212 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
69611247 GGTTACCATA
Statistics
Matches: 141, Mismatches: 10, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
39 124 0.88
40 17 0.12
ACGTcount: A:0.24, C:0.23, G:0.31, T:0.22
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
Found at i:69624836 original size:37 final size:34
Alignment explanation
Indices: 69624786--69624857 Score: 81
Period size: 37 Copynumber: 2.0 Consensus size: 34
69624776 AGTGTGCCGT
*
69624786 TTTTTCTAACCATCTTTCCTCCTCCTCCTTTCTTTTC
1 TTTTTCTAACCATC-TACCTCCTCCT-C-TTCTTTTC
** *
69624823 TTTTTCTCTCCATCTACCTTCTCCTCTTCTTTTC
1 TTTTTCTAACCATCTACCTCCTCCTCTTCTTTTC
69624857 T
1 T
69624858 CTTTAGCCGA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
34 9 0.29
35 1 0.03
36 9 0.29
37 12 0.39
ACGTcount: A:0.07, C:0.38, G:0.00, T:0.56
Consensus pattern (34 bp):
TTTTTCTAACCATCTACCTCCTCCTCTTCTTTTC
Found at i:69634227 original size:40 final size:40
Alignment explanation
Indices: 69634168--69634375 Score: 229
Period size: 40 Copynumber: 5.2 Consensus size: 40
69634158 CATTGGAATG
* * *
69634168 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
**
69634208 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATT
* * * **
69634248 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
* * *
69634288 AAATCCGGGTTAAGACCCGAAGGCAATTGTGCGAGTCACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
* ** * * *
69634328 ATAACCGGGCTTTGTCCCGAAGGCATTTGAGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
69634368 ATATCCGG
1 ATATCCGG
69634376 TTAAATTCCG
Statistics
Matches: 141, Mismatches: 25, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.02
40 136 0.96
41 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
Found at i:69645111 original size:29 final size:29
Alignment explanation
Indices: 69645087--69645180 Score: 152
Period size: 29 Copynumber: 3.2 Consensus size: 29
69645077 TCGCACACCC
* * *
69645087 AGTGCCGTATTTTTCTAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
69645116 AGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
*
69645145 AGTGCCATATATTTCCAGCACGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
69645174 AGTGCCA
1 AGTGCCA
69645181 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 61 1.00
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.31
Consensus pattern (29 bp):
AGTGCCATATATTTCCAGCATGCACACTT
Found at i:69646528 original size:18 final size:18
Alignment explanation
Indices: 69646495--69646533 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 18
69646485 TCCACACCCA
69646495 TTTTTTTTTCATCATTATCT
1 TTTTTTTTTCA-CATT-TCT
69646515 TTTTTTTTTC-CATTTCT
1 TTTTTTTTTCACATTTCT
69646532 TT
1 TT
69646534 ATTCTCCCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 5 0.26
18 4 0.21
20 10 0.53
ACGTcount: A:0.10, C:0.15, G:0.00, T:0.74
Consensus pattern (18 bp):
TTTTTTTTTCACATTTCT
Found at i:69647411 original size:27 final size:27
Alignment explanation
Indices: 69647381--69647544 Score: 157
Period size: 27 Copynumber: 6.1 Consensus size: 27
69647371 AGTGGATAAG
**
69647381 TTGTAAAATTACCAAAATACCCTTGGT
1 TTGTAAAATTACCAAAATACCCTTAAT
* *
69647408 TTGTAAAATTACCAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCTTAAT
*
69647435 TTGTAAAATTACCAAAATACCCCTAAT
1 TTGTAAAATTACCAAAATACCCTTAAT
* ** * *
69647462 TTGTGAAATTACTGAAATACCCTCAAC
1 TTGTAAAATTACCAAAATACCCTTAAT
* *** ** *
69647489 CTGTAAAATTATTGAAATACCCTCGAC
1 TTGTAAAATTACCAAAATACCCTTAAT
* *
69647516 TTGTAAAATTACCAAAGTACCCTTGAT
1 TTGTAAAATTACCAAAATACCCTTAAT
69647543 TT
1 TT
69647545 ACAGAATTAC
Statistics
Matches: 117, Mismatches: 20, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 117 1.00
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.32
Consensus pattern (27 bp):
TTGTAAAATTACCAAAATACCCTTAAT
Found at i:69647606 original size:27 final size:27
Alignment explanation
Indices: 69647576--69647629 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
69647566 CGATTTATAA
*
69647576 AATTACAGAAATACCCTTGTAAGGTAG
1 AATTACAGAAATACCCCTGTAAGGTAG
* *
69647603 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACAGAAATACCCCTGTAAGGTAG
69647630 GACTACCGAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.37, C:0.19, G:0.20, T:0.24
Consensus pattern (27 bp):
AATTACAGAAATACCCCTGTAAGGTAG
Found at i:69647636 original size:27 final size:27
Alignment explanation
Indices: 69647583--69647655 Score: 76
Period size: 27 Copynumber: 2.7 Consensus size: 27
69647573 TAAAATTACA
* * *
69647583 GAAATACCCTTGTAAGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAACTACC
*
69647610 GAAATACCCCTGTAGGGTAGGACTACC
1 GAAATACCCCTGTAGGGTAGAACTACC
**
69647637 GATTTACCCCTAG-AGGGTA
1 GAAATACCCCT-GTAGGGTA
69647656 AAATGACTAT
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
27 38 0.97
28 1 0.03
ACGTcount: A:0.32, C:0.22, G:0.23, T:0.23
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAACTACC
Found at i:69648393 original size:2 final size:2
Alignment explanation
Indices: 69648388--69648419 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
69648378 ACACACACAC
69648388 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
69648420 GTTCTGGTGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:69650827 original size:37 final size:37
Alignment explanation
Indices: 69650771--69650873 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
69650761 CGAATAGTCC
* *
69650771 CCACACGTAGTTATTGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
69650808 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
69650845 CCACACATAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
69650874 ATATATTTCC
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:69651075 original size:48 final size:48
Alignment explanation
Indices: 69651014--69651695 Score: 1103
Period size: 48 Copynumber: 14.0 Consensus size: 48
69651004 ATATACACAC
* * *
69651014 ATCTCCTATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
69651062 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
69651110 ATCTCATTCATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
69651158 ATCTCATTCATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
69651206 ATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
69651256 ATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
69651304 ATCTCATTCATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
69651352 ATCTCATACATATTTCCCATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * * *
69651400 ATCTCATTCATATTTCGCACTAGCCATTCTGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
69651448 ATCTCATATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTC----ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
69651500 ATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
69651548 ATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
69651598 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
69651646 ATTTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
69651694 AT
1 AT
69651696 ATATTTATCT
Statistics
Matches: 597, Mismatches: 29, Indels: 16
0.93 0.05 0.02
Matches are distributed among these distances:
48 463 0.78
50 91 0.15
52 43 0.07
ACGTcount: A:0.30, C:0.27, G:0.06, T:0.36
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:69651271 original size:146 final size:144
Alignment explanation
Indices: 69651023--69651695 Score: 1121
Period size: 146 Copynumber: 4.6 Consensus size: 144
69651013 CATCTCCTAT
*
69651023 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCA
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
*
69651088 TTCGGCTTTACCACATATACATATCTCATTCATATTTCACACTAGCCATTCGGCTTTACCACATA
66 TTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATA
69651153 TACATATCTCATTC
131 TACATATCTCATTC
*
69651167 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGC
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTTCACATTAGC
* *
69651232 CATTCGGCTTTACCACATATACATATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACA
64 CATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA
69651297 TATACATATCTCATTC
129 TATACATATCTCATTC
*
69651313 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCCCATTAGCCA
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
* * *
69651378 TTCGGCTTTACCACATATACATATCTCATTCATATTTCGCACTAGCCATTCTGCTTTACCACATA
66 TTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATA
*
69651443 TACATATCTCATATATAT
131 TACATATCTC--AT-T-C
* *
69651461 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACACATTTCACATTAGCCA
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
* *
69651526 TTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACA
66 TTCGGCTTTACCACATATACATATCTC--ATACATATTTCACACTAGCCATTCGGCTTTACCACA
*
69651591 TATACATATCTCATAC
129 TATACATATCTCATTC
* *
69651607 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATTTCATACATATTTCACATTAGCCA
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
69651672 TTCGGCTTTACCACATATACATAT
66 TTCGGCTTTACCACATATACATAT
69651696 ATATTTATCT
Statistics
Matches: 496, Mismatches: 25, Indels: 14
0.93 0.05 0.03
Matches are distributed among these distances:
144 133 0.27
146 228 0.46
147 1 0.00
148 91 0.18
150 43 0.09
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.36
Consensus pattern (144 bp):
ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
TTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATA
TACATATCTCATTC
Found at i:69657170 original size:27 final size:27
Alignment explanation
Indices: 69657140--69657282 Score: 198
Period size: 27 Copynumber: 5.3 Consensus size: 27
69657130 CCTTGATTTA
*
69657140 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
*
69657167 AAAATTACCAAAATACCCCTGGTTTGA
1 AAAATTACCAAAATACCCCTGGTTTGT
* * *
69657194 AAAATTACTAAAATACCCTTGGTTTAT
1 AAAATTACCAAAATACCCCTGGTTTGT
*
69657221 AAAATCACCAAAAT-CCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
* **
69657247 AAAATTACCAAAATACCCTTGGTTTAC
1 AAAATTACCAAAATACCCCTGGTTTGT
69657274 AAAATTACC
1 AAAATTACC
69657283 GTTTTACCCT
Statistics
Matches: 101, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
26 23 0.23
27 78 0.77
ACGTcount: A:0.41, C:0.22, G:0.08, T:0.29
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGGTTTGT
Found at i:69657239 original size:80 final size:80
Alignment explanation
Indices: 69657114--69657281 Score: 250
Period size: 80 Copynumber: 2.1 Consensus size: 80
69657104 CTCGACCTGT
* * *
69657114 AAAATTATTGAAATACCCTTGATTTAAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAA
1 AAAATTACTAAAATACCCTTGATTTAAAAATCACCAAAATACCCCTAGTTTGTAAAATTACCAAA
69657179 ATACCCCTGGTTTGA-
66 ATACCCCTGGTTT-AC
* *
69657194 AAAATTACTAAAATACCCTTGGTTTATAAAATCACCAAAAT-CCCCTGGTTTGTAAAATTACCAA
1 AAAATTACTAAAATACCCTTGATTTA-AAAATCACCAAAATACCCCTAGTTTGTAAAATTACCAA
*
69657258 AATACCCTTGGTTTAC
65 AATACCCCTGGTTTAC
69657274 AAAATTAC
1 AAAATTAC
69657282 CGTTTTACCC
Statistics
Matches: 80, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
79 1 0.01
80 66 0.82
81 13 0.16
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (80 bp):
AAAATTACTAAAATACCCTTGATTTAAAAATCACCAAAATACCCCTAGTTTGTAAAATTACCAAA
ATACCCCTGGTTTAC
Found at i:69657260 original size:53 final size:54
Alignment explanation
Indices: 69657124--69657278 Score: 215
Period size: 53 Copynumber: 2.9 Consensus size: 54
69657114 AAAATTATTG
* * * * * *
69657124 AAATACCCTTGATTT-AAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCA
1 AAATACCCCTGGTTTGAAAAATTACCAAAATACCCTTGGTTTATAAAATCACCA
*
69657177 AAATACCCCTGGTTTGAAAAATTACTAAAATACCCTTGGTTTATAAAATCACCA
1 AAATACCCCTGGTTTGAAAAATTACCAAAATACCCTTGGTTTATAAAATCACCA
* *
69657231 AAAT-CCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTACAAAAT
1 AAATACCCCTGGTTTGAAAAATTACCAAAATACCCTTGGTTTATAAAAT
69657279 TACCGTTTTA
Statistics
Matches: 91, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
53 54 0.59
54 37 0.41
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (54 bp):
AAATACCCCTGGTTTGAAAAATTACCAAAATACCCTTGGTTTATAAAATCACCA
Found at i:69657290 original size:27 final size:27
Alignment explanation
Indices: 69657260--69657550 Score: 402
Period size: 27 Copynumber: 10.8 Consensus size: 27
69657250 ATTACCAAAA
* *
69657260 TACCCTTGGTTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
* *
69657287 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACCGTTT
* * *
69657314 TACCCTCGATTTACAGAATTATCGTCT
1 TACCCTCGATTTACAAAATTACCGTTT
*
69657341 TACCCTCTATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
69657368 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
* * *
69657395 TACCCTCGATTTACAGAATTATCATTT
1 TACCCTCGATTTACAAAATTACCGTTT
* *
69657422 TACCCTCTATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
**
69657449 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACCGTTT
*
69657476 TACCCTCGATTTACAAAATTACAGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
* * *
69657503 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
*
69657530 TACCCTCGATTTATAAAATTA
1 TACCCTCGATTTACAAAATTA
69657551 TCGAAATACC
Statistics
Matches: 236, Mismatches: 28, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 236 1.00
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCGTTT
Found at i:69657582 original size:27 final size:27
Alignment explanation
Indices: 69657552--69657683 Score: 151
Period size: 27 Copynumber: 4.9 Consensus size: 27
69657542 ATAAAATTAT
* * *
69657552 CGAAATACCCTTATATGGTAGAAATGC
1 CGAAATACCCTTGTAGGGTAGAAATAC
*
69657579 CGAAATACCTTTGTAGGGTAGAAATAC
1 CGAAATACCCTTGTAGGGTAGAAATAC
*
69657606 CGAAATACTCC-TGTAGGGTAGAATTAC
1 CGAAATAC-CCTTGTAGGGTAGAAATAC
* * * *
69657633 TGAAATACTCTTGTAAGGTAGAATTAC
1 CGAAATACCCTTGTAGGGTAGAAATAC
*
69657660 CGAAATACCCTTGTGGGGTA-AAAT
1 CGAAATACCCTTGTAGGGTAGAAAT
69657684 TACCATTTTA
Statistics
Matches: 89, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
26 4 0.04
27 84 0.94
28 1 0.01
ACGTcount: A:0.36, C:0.16, G:0.21, T:0.27
Consensus pattern (27 bp):
CGAAATACCCTTGTAGGGTAGAAATAC
Found at i:69658209 original size:6 final size:6
Alignment explanation
Indices: 69658200--69658337 Score: 99
Period size: 6 Copynumber: 22.3 Consensus size: 6
69658190 TTGCATTCAC
*
69658200 ATTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG -TTACCT-
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATT--CTG
* * *
69658249 ACTTCTG ATTTTG GTTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG
1 A-TTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG
*
69658299 ATTCTG -TTACCG AATTCTG ATTCTG ATTCT- AGTTCTG AT
1 ATTCTG ATT-CTG -ATTCTG ATTCTG ATTCTG A-TTCTG AT
69658338 AATGTTTCTT
Statistics
Matches: 106, Mismatches: 10, Indels: 32
0.72 0.07 0.22
Matches are distributed among these distances:
5 9 0.08
6 79 0.75
7 12 0.11
8 6 0.06
ACGTcount: A:0.18, C:0.19, G:0.16, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:69658256 original size:25 final size:25
Alignment explanation
Indices: 69658200--69658279 Score: 94
Period size: 25 Copynumber: 3.2 Consensus size: 25
69658190 TTGCATTCAC
69658200 ATTCTGATTCTGATTCTGTTACCTG
1 ATTCTGATTCTGATTCTGTTACCTG
*
69658225 ATACTGATTCTGATTCTGTTACCT-
1 ATTCTGATTCTGATTCTGTTACCTG
* *
69658249 ACTTCTGATTTTGGTTCTGATT--CTG
1 A-TTCTGATTCTGATTCTG-TTACCTG
69658274 ATTCTG
1 ATTCTG
69658280 TTACCTGATA
Statistics
Matches: 48, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
24 8 0.17
25 38 0.79
26 2 0.04
ACGTcount: A:0.16, C:0.19, G:0.16, T:0.49
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTTACCTG
Found at i:69658294 original size:25 final size:25
Alignment explanation
Indices: 69658265--69658354 Score: 105
Period size: 25 Copynumber: 3.6 Consensus size: 25
69658255 GATTTTGGTT
69658265 CTGATTCTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTTACCTGATA
*
69658290 CTGATTCTGATTCTGTTACC-GAATT
1 CTGATTCTGATTCTGTTACCTG-ATA
69658315 CTGATTCTGATTCTAGTT--CTGATA
1 CTGATTCTGATTCT-GTTACCTGATA
* * *
69658339 ATGTTTCTTATTCTGT
1 CTGATTCTGATTCTGT
69658355 AATGGGCTAA
Statistics
Matches: 57, Mismatches: 5, Indels: 8
0.81 0.07 0.11
Matches are distributed among these distances:
23 2 0.04
24 15 0.26
25 37 0.65
26 3 0.05
ACGTcount: A:0.19, C:0.18, G:0.16, T:0.48
Consensus pattern (25 bp):
CTGATTCTGATTCTGTTACCTGATA
Found at i:69658294 original size:37 final size:37
Alignment explanation
Indices: 69658222--69658304 Score: 114
Period size: 37 Copynumber: 2.2 Consensus size: 37
69658212 ATTCTGTTAC
* *
69658222 CTGATACTGATTCTGATTCTGTTACCTACTTCTGATT
1 CTGATTCTGATTCTGATTCTGTTACCTACTACTGATT
* *
69658259 TTGGTTCTGATTCTGATTCTGTTACCTGA-TACTGATT
1 CTGATTCTGATTCTGATTCTGTTACCT-ACTACTGATT
69658296 CTGATTCTG
1 CTGATTCTG
69658305 TTACCGAATT
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
37 38 0.97
38 1 0.03
ACGTcount: A:0.17, C:0.19, G:0.17, T:0.47
Consensus pattern (37 bp):
CTGATTCTGATTCTGATTCTGTTACCTACTACTGATT
Found at i:69658298 original size:62 final size:62
Alignment explanation
Indices: 69658200--69658337 Score: 224
Period size: 62 Copynumber: 2.2 Consensus size: 62
69658190 TTGCATTCAC
* * *
69658200 ATTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTACTTCTGATTTTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCGAATTCTGATTCTG
*
69658262 GTTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCGAATTCTGATTCTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCGAATTCTGATTCTG
69658324 ATTCT-AGTTCTGAT
1 ATTCTGA-TTCTGAT
69658338 AATGTTTCTT
Statistics
Matches: 70, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
61 1 0.01
62 69 0.99
ACGTcount: A:0.18, C:0.19, G:0.16, T:0.47
Consensus pattern (62 bp):
ATTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCGAATTCTGATTCTG
Found at i:69658319 original size:31 final size:30
Alignment explanation
Indices: 69658203--69658328 Score: 104
Period size: 31 Copynumber: 4.3 Consensus size: 30
69658193 CATTCACATT
69658203 CTGATTCTGATTCTGTTA-C----CTGATA
1 CTGATTCTGATTCTGTTACCGATTCTGATA
* *
69658228 CTGATTCTGATTCTGTTACCTACTTCTGATT
1 CTGATTCTGATTCTGTTACCGA-TTCTGATA
* * *
69658259 TTGGTTCTGATTCTGATT-CTG-TTACCTGATA
1 CTGATTCTGATTCTG-TTACCGATT--CTGATA
*
69658290 CTGATTCTGATTCTGTTACCGAATTCTGATT
1 CTGATTCTGATTCTGTTACCG-ATTCTGATA
69658321 CTGATTCT
1 CTGATTCT
69658329 AGTTCTGATA
Statistics
Matches: 79, Mismatches: 10, Indels: 18
0.74 0.09 0.17
Matches are distributed among these distances:
25 18 0.23
26 1 0.01
29 2 0.03
30 2 0.03
31 52 0.66
32 2 0.03
33 2 0.03
ACGTcount: A:0.17, C:0.20, G:0.16, T:0.47
Consensus pattern (30 bp):
CTGATTCTGATTCTGTTACCGATTCTGATA
Found at i:69661077 original size:27 final size:28
Alignment explanation
Indices: 69661020--69661089 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
69661010 AAACTTGTAC
*
69661020 AGCACTAAGTGTGCGAGTTTGATCATGT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
69661048 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
69661075 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
69661090 GACACACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:69663704 original size:27 final size:27
Alignment explanation
Indices: 69663612--69663686 Score: 150
Period size: 27 Copynumber: 2.8 Consensus size: 27
69663602 AGTGGATAAG
69663612 TTGTAAAATTACCAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCCTAGT
69663639 TTGTAAAATTACCAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCCTAGT
69663666 TTGTAAAATTACCAAAATACC
1 TTGTAAAATTACCAAAATACC
69663687 TTTGATTAGT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.43, C:0.21, G:0.07, T:0.29
Consensus pattern (27 bp):
TTGTAAAATTACCAAAATACCCCTAGT
Found at i:69663728 original size:27 final size:27
Alignment explanation
Indices: 69663612--69663772 Score: 148
Period size: 27 Copynumber: 6.0 Consensus size: 27
69663602 AGTGGATAAG
* *
69663612 TTGTAAAATTACCAAAATACCC-CTAGT
1 TTGTAAAATTACCAAAATACCCTCGA-C
* *
69663639 TTGTAAAATTACCAAAATACCC-CTAGT
1 TTGTAAAATTACCAAAATACCCTCGA-C
* *
69663666 TTGTAAAATTACCAAAATACCTTTGA-
1 TTGTAAAATTACCAAAATACCCTCGAC
* *
69663692 TTAGTGAAATTACTAAAATACCCTCGAC
1 TT-GTAAAATTACCAAAATACCCTCGAC
* ** * *
69663720 CTGTAAAATTACTGAAATGCCCTCAAC
1 TTGTAAAATTACCAAAATACCCTCGAC
*
69663747 TTGTAAAATTACCAAAGTACCCTCGA
1 TTGTAAAATTACCAAAATACCCTCGA
69663773 TTTACAGAAT
Statistics
Matches: 113, Mismatches: 18, Indels: 6
0.82 0.13 0.04
Matches are distributed among these distances:
26 2 0.02
27 109 0.96
28 2 0.02
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.29
Consensus pattern (27 bp):
TTGTAAAATTACCAAAATACCCTCGAC
Found at i:69663783 original size:27 final size:27
Alignment explanation
Indices: 69663616--69663823 Score: 107
Period size: 27 Copynumber: 7.7 Consensus size: 27
69663606 GATAAGTTGT
* **
69663616 AAAATTACCAAAATACCC-CTAGTTTGT
1 AAAATTACCAAAATACCCTCGA-TTTAC
* **
69663643 AAAATTACCAAAATACCC-CTAGTTTGT
1 AAAATTACCAAAATACCCTCGA-TTTAC
* * *
69663670 AAAATTACCAAAATACCTTTGA-TTAGT
1 AAAATTACCAAAATACCCTCGATTTA-C
* * ** **
69663697 GAAATTACTAAAATACCCTCGACCTGT
1 AAAATTACCAAAATACCCTCGATTTAC
** * * * **
69663724 AAAATTACTGAAATGCCCTCAACTTGT
1 AAAATTACCAAAATACCCTCGATTTAC
*
69663751 AAAATTACCAAAGTACCCTCGATTTAC
1 AAAATTACCAAAATACCCTCGATTTAC
* * ***
69663778 AGAATTATCATTTTACCCTCGATTTAC
1 AAAATTACCAAAATACCCTCGATTTAC
*
69663805 AAAATTACAAAAATACCCT
1 AAAATTACCAAAATACCCT
69663824 TGTAAGGTAG
Statistics
Matches: 144, Mismatches: 34, Indels: 6
0.78 0.18 0.03
Matches are distributed among these distances:
26 2 0.01
27 140 0.97
28 2 0.01
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.30
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTCGATTTAC
Found at i:69663837 original size:27 final size:27
Alignment explanation
Indices: 69663807--69663860 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
69663797 CGATTTACAA
*
69663807 AATTACAAAAATACCCTTGTAAGGTAG
1 AATTACAAAAATACCCCTGTAAGGTAG
**
69663834 AATTACCGAAATACCCCTGTAAGGTAG
1 AATTACAAAAATACCCCTGTAAGGTAG
69663861 GACTACCGAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.41, C:0.19, G:0.17, T:0.24
Consensus pattern (27 bp):
AATTACAAAAATACCCCTGTAAGGTAG
Found at i:69663867 original size:27 final size:27
Alignment explanation
Indices: 69663815--69663879 Score: 85
Period size: 27 Copynumber: 2.4 Consensus size: 27
69663805 AAAATTACAA
* *
69663815 AAATACCCTTGTAAGGTAGAATTACCG
1 AAATACCCCTGTAAGGTAGAACTACCG
*
69663842 AAATACCCCTGTAAGGTAGGACTACCG
1 AAATACCCCTGTAAGGTAGAACTACCG
**
69663869 ATTTACCCCTG
1 AAATACCCCTG
69663880 GAGGGTAAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (27 bp):
AAATACCCCTGTAAGGTAGAACTACCG
Found at i:69676939 original size:18 final size:19
Alignment explanation
Indices: 69676918--69676953 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
69676908 AGTAGTCTTA
*
69676918 AAATAGAATAA-AAATAAT
1 AAATAAAATAATAAATAAT
69676936 AAATAAAATAATAAATAA
1 AAATAAAATAATAAATAA
69676954 AAGTTTTTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.75, C:0.00, G:0.03, T:0.22
Consensus pattern (19 bp):
AAATAAAATAATAAATAAT
Found at i:69676945 original size:12 final size:12
Alignment explanation
Indices: 69676928--69676955 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
69676918 AAATAGAATA
69676928 AAAATAATAAAT
1 AAAATAATAAAT
69676940 AAAATAATAAAT
1 AAAATAATAAAT
69676952 AAAA
1 AAAA
69676956 GTTTTTAAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (12 bp):
AAAATAATAAAT
Found at i:69681796 original size:49 final size:49
Alignment explanation
Indices: 69681743--69682161 Score: 652
Period size: 49 Copynumber: 8.7 Consensus size: 49
69681733 GATTCTATGC
*
69681743 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGCGTATATATATGTGATAAGGCCTAATGGCCGATGT
*
69681792 GATGAATGTGAAAGCGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGCGTATATATATGTGATAAGGCCTAATGGCCGATGT
*
69681841 GATGAATGTGAAAGCGTATACATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGCGTATATATATGTGATAAGGCCTAATGGCCGATGT
*
69681890 GATGAATGTGAAAGCGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGCGTATATATATGTGATAAGGCCTAATGGCCGATGT
*
69681939 GATGAATGTGAAAGCGTATACATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGCGTATATATATGTGATAAGGCCTAATGGCCGATGT
* *
69681988 GATGAATGTGAAAGCGTATACATATGTGATAAGGCCTAATGGCCAATGT
1 GATGAATGTGAAAGCGTATATATATGTGATAAGGCCTAATGGCCGATGT
* *
69682037 GATGAATGTGAAA--GTGTATATATGTGATAAGGCCTAATGGCCAATGT
1 GATGAATGTGAAAGCGTATATATATGTGATAAGGCCTAATGGCCGATGT
* * * * *
69682084 GATGAATGTGAAA--GTGTATATATGTGATAGGGCCGAGTGGCCAATGT
1 GATGAATGTGAAAGCGTATATATATGTGATAAGGCCTAATGGCCGATGT
* *
69682131 GATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 GATGAATGTGAAAGCGTATATATATGTGATAAG
69682162 TCCCGAAGGG
Statistics
Matches: 351, Mismatches: 17, Indels: 6
0.94 0.05 0.02
Matches are distributed among these distances:
47 97 0.28
48 1 0.00
49 253 0.72
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.28
Consensus pattern (49 bp):
GATGAATGTGAAAGCGTATATATATGTGATAAGGCCTAATGGCCGATGT
Found at i:69682039 original size:22 final size:22
Alignment explanation
Indices: 69682011--69682086 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
69682001 GCGTATACAT
69682011 ATGTGATAAGGCCTAATGGCCA
1 ATGTGATAAGGCCTAATGGCCA
* *** ***
69682033 ATGTGATGAATGTGAAAGTGTATA
1 ATGTGAT-AAGGCCTAA-TGGCCA
69682057 TATGTGATAAGGCCTAATGGCCA
1 -ATGTGATAAGGCCTAATGGCCA
69682080 ATGTGAT
1 ATGTGAT
69682087 GAATGTGAAA
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 14 0.38
23 8 0.22
24 8 0.22
25 7 0.19
ACGTcount: A:0.33, C:0.11, G:0.28, T:0.29
Consensus pattern (22 bp):
ATGTGATAAGGCCTAATGGCCA
Found at i:69691036 original size:42 final size:42
Alignment explanation
Indices: 69690945--69691024 Score: 101
Period size: 42 Copynumber: 2.0 Consensus size: 42
69690935 CGAATCAGTG
* * * *
69690945 TCGACGCCATGTCTCAGACATGGTCTTTTACAGAACCTCATA
1 TCGATGCCATGTCCCAGACATGGTCTTATACAGAACATCATA
*
69690987 TAGATGCCATGTCCCAGACATGGTCTTATAC-GAA-ATCA
1 TCGATGCCATGTCCCAGACATGGTCTTATACAGAACATCA
69691025 CTTTTCGATG
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
40 3 0.09
41 3 0.09
42 27 0.82
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (42 bp):
TCGATGCCATGTCCCAGACATGGTCTTATACAGAACATCATA
Found at i:69691104 original size:46 final size:46
Alignment explanation
Indices: 69690989--69691108 Score: 125
Period size: 46 Copynumber: 2.6 Consensus size: 46
69690979 ACCTCATATA
* * *
69690989 GATGCCATGTCCCAGACATGGTCTTATACGAAATCACTTTTCGATGCC
1 GATGCCATGTCCTAGACATGGTC-T-TACGAAATCACGTATCGATGCC
* * * * *
69691037 GAAGCCATATCCCT-GAAATGGTCTTACGAGATCGCGTATCGATGCC
1 GATGCCATGT-CCTAGACATGGTCTTACGAAATCACGTATCGATGCC
*
69691083 GATGTCATGTCCTAGACATGGTCTTA
1 GATGCCATGTCCTAGACATGGTCTTA
69691109 TATAGGATCT
Statistics
Matches: 58, Mismatches: 12, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
45 3 0.05
46 36 0.62
47 1 0.02
48 16 0.28
49 2 0.03
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.28
Consensus pattern (46 bp):
GATGCCATGTCCTAGACATGGTCTTACGAAATCACGTATCGATGCC
Found at i:69693957 original size:47 final size:47
Alignment explanation
Indices: 69693880--69694083 Score: 309
Period size: 47 Copynumber: 4.3 Consensus size: 47
69693870 CCTTCGGGAG
* * * *
69693880 TTATCACATTTATACACTTTCACATCCATCACATTGGCCACTCGGCC
1 TTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCC
* *
69693927 TTATCACATATATACACTTTCATATTCATCACATCGGCCATTAGGCC
1 TTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCC
*
69693974 TTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCC
1 TTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCC
* * * *
69694021 TTATCACACATATGCACTTTCACATTCATCACATGGGCCATTAGGCT
1 TTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCC
69694068 TTATCACATATATACA
1 TTATCACATATATACA
69694084 TATCACACAT
Statistics
Matches: 141, Mismatches: 16, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 141 1.00
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
TTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCC
Found at i:69694133 original size:48 final size:48
Alignment explanation
Indices: 69694057--69694240 Score: 323
Period size: 48 Copynumber: 3.8 Consensus size: 48
69694047 CATCACATGG
* * *
69694057 GCCATTAGGCTTTATCACATATATACATATCACACATATATTTCACATTA
1 GCCATTCGGCTTTA-C-CACATATACATATCACACATATATTTCACATCA
69694107 GCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATCA
1 GCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATCA
69694155 GCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATCA
1 GCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATCA
69694203 GCCATTCGGCTTTACCACATATACATATCACACATATA
1 GCCATTCGGCTTTACCACATATACATATCACACATATA
69694241 CTTATTTGTC
Statistics
Matches: 131, Mismatches: 3, Indels: 2
0.96 0.02 0.01
Matches are distributed among these distances:
48 117 0.89
49 1 0.01
50 13 0.10
ACGTcount: A:0.34, C:0.27, G:0.07, T:0.32
Consensus pattern (48 bp):
GCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATCA
Found at i:69694138 original size:94 final size:97
Alignment explanation
Indices: 69693908--69694234 Score: 340
Period size: 94 Copynumber: 3.4 Consensus size: 97
69693898 TTCACATCCA
* * * * *
69693908 TCACATTGGCCACTCGGCCTTATCACATATATACACTTTCATATTCATCACATCGGCCATTAGGC
1 TCACATTAGCCATTCGGCCTTATCACACATATACACTATCACATTCATCACATCGGCCATTAGGC
* *
69693973 CTTATCACATATATACACT-T-TCACAT-TCA--
66 TTTATCACATATATACA-TATCACACATAT-ATT
* * * *
69694002 TCACATTGGCCATTCGGCCTTATCACACATATGCACTTTCACATTCATCACATGGGCCATTAGGC
1 TCACATTAGCCATTCGGCCTTATCACACATATACACTATCACATTCATCACATCGGCCATTAGGC
69694067 TTTATCACATATATACATATCACACATATATT
66 TTTATCACATATATACATATCACACATATATT
* *
69694099 TCACATTAGCCATTCGGCTTTA-C-CACATATACA-TATCACACATAT-ATTTCACATCAGCCAT
1 TCACATTAGCCATTCGGCCTTATCACACATATACACTAT--CACAT-TCA--TCACATCGGCCAT
* *
69694160 TCGGCTTTA-C-CACATATACATATCACACATATATT
61 TAGGCTTTATCACATATATACATATCACACATATATT
* *
69694195 TCACATCAGCCATTCGGCTTTA-C-CACATATACA-TATCACA
1 TCACATTAGCCATTCGGCCTTATCACACATATACACTATCACA
69694235 CATATACTTA
Statistics
Matches: 207, Mismatches: 16, Indels: 20
0.85 0.07 0.08
Matches are distributed among these distances:
93 1 0.00
94 83 0.40
95 15 0.07
96 67 0.32
97 22 0.11
98 19 0.09
ACGTcount: A:0.31, C:0.29, G:0.08, T:0.32
Consensus pattern (97 bp):
TCACATTAGCCATTCGGCCTTATCACACATATACACTATCACATTCATCACATCGGCCATTAGGC
TTTATCACATATATACATATCACACATATATT
Found at i:69696250 original size:21 final size:22
Alignment explanation
Indices: 69696216--69696262 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 22
69696206 GAAATAGTTG
**
69696216 AAAAAGATCAAAACTTTGTTTT
1 AAAAAGATCAAAACTTTCCTTT
*
69696238 AAAAA-ATCTAAACTTTCCTTT
1 AAAAAGATCAAAACTTTCCTTT
69696259 AAAA
1 AAAA
69696263 TGACTAAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 17 0.77
22 5 0.23
ACGTcount: A:0.49, C:0.13, G:0.04, T:0.34
Consensus pattern (22 bp):
AAAAAGATCAAAACTTTCCTTT
Found at i:69696517 original size:159 final size:159
Alignment explanation
Indices: 69696202--69696497 Score: 393
Period size: 159 Copynumber: 1.9 Consensus size: 159
69696192 CAGAACTTTA
* * *
69696202 TTTTGAAATAGTTGAAAAAGATCAAAACTTTGTTTTAAAAAATCTAAACTTTCCTTTAAAATGAC
1 TTTTGAAATAGTTGAAAAAAATCAAAACTTTGTTTTAAAAAATCTAAACTTTCCGTTAAAATAAC
* * *
69696267 TAAAAAACATATTTTTATTTTGAAAATCTAAACTTTCTCTCTTTTTTTTAAAAAAAAAAAAACTA
66 TAAAAAACATATTTTTATTTTGAAAATCTAAAATTTCTCTCTTTTTTCTAAAAAAAAAAAAACAA
** *
69696332 TTTTTTTCTTAAAGATCAAAGGTTTTTTT
131 AATTTTTCTCAAAGATCAAAGGTTTTTTT
* * *
69696361 TTTTGAAATAGTTGAAAAAAATCAAAACTTTGTTTT-AAAAATTTAAAGTTTCCGTTAAATTAAC
1 TTTTGAAATAGTTGAAAAAAATCAAAACTTTGTTTTAAAAAATCTAAACTTTCCGTTAAAATAAC
* ** *
69696425 TTAAAAAAAACATATTTTTATTTTTAAAATCTAAAATTTC-CT-TTTTTTCT-AAAAGGAAAAAT
66 -T--AAAAAACATATTTTTATTTTGAAAATCTAAAATTTCTCTCTTTTTTCTAAAAAAAAAAAAA
69696487 CAAAATTTTTC
128 CAAAATTTTTC
69696498 CCAAGATTAA
Statistics
Matches: 119, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
158 40 0.34
159 43 0.36
160 2 0.02
161 34 0.29
ACGTcount: A:0.42, C:0.09, G:0.06, T:0.42
Consensus pattern (159 bp):
TTTTGAAATAGTTGAAAAAAATCAAAACTTTGTTTTAAAAAATCTAAACTTTCCGTTAAAATAAC
TAAAAAACATATTTTTATTTTGAAAATCTAAAATTTCTCTCTTTTTTCTAAAAAAAAAAAAACAA
AATTTTTCTCAAAGATCAAAGGTTTTTTT
Found at i:69696694 original size:19 final size:19
Alignment explanation
Indices: 69696659--69696697 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
69696649 GCCTATGGCC
*
69696659 AAGAAAAAAAAGGAAATAG
1 AAGAAAAAAAAGAAAATAG
69696678 AAGAAAAGAAAA-AAAATAG
1 AAGAAAA-AAAAGAAAATAG
69696697 A
1 A
69696698 CTGCTTGTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.77, C:0.00, G:0.18, T:0.05
Consensus pattern (19 bp):
AAGAAAAAAAAGAAAATAG
Found at i:69696862 original size:3 final size:3
Alignment explanation
Indices: 69696813--69696846 Score: 50
Period size: 3 Copynumber: 11.0 Consensus size: 3
69696803 TTAAGAAATG
*
69696813 ATA ATA ATA ATA TCTA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA
69696847 GCAGTGATGA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
3 26 0.93
4 2 0.07
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:69702031 original size:55 final size:55
Alignment explanation
Indices: 69701901--69702033 Score: 135
Period size: 55 Copynumber: 2.4 Consensus size: 55
69701891 GGAGGCCCAC
* * *
69701901 GCCCGTGTTATTCTGACATGTTCAACCACGAGTTCTAGACACGATCGTGGCAAAT
1 GCCCGTGTTATTTTGACAGGTTCAACCACGAGTTCTAGACACGAGCGTGGCAAAT
* ** * * *
69701956 GCCCGTGCTATTTTCTCAGGTTCAACCACGA-TTCTAAGACACGGGCGTGTCACA-
1 GCCCGTGTTATTTTGACAGGTTCAACCACGAGTTCT-AGACACGAGCGTGGCAAAT
* *
69702010 GACCCGTGTTGTTTTGGCAGGTTC
1 G-CCCGTGTTATTTTGACAGGTTC
69702034 GTCCACGGTC
Statistics
Matches: 63, Mismatches: 13, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
54 5 0.08
55 58 0.92
ACGTcount: A:0.21, C:0.26, G:0.24, T:0.29
Consensus pattern (55 bp):
GCCCGTGTTATTTTGACAGGTTCAACCACGAGTTCTAGACACGAGCGTGGCAAAT
Found at i:69706927 original size:42 final size:42
Alignment explanation
Indices: 69706880--69707306 Score: 512
Period size: 42 Copynumber: 10.2 Consensus size: 42
69706870 ATATACGATA
* * ** *
69706880 CAATGAAAAGTAAATGGACCTCAACACTTGCACCTTTAAATG
1 CAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATG
* *
69706922 CAATGAAAAATAAATTGACCTCCACACCTGGGCCTCTAAATG
1 CAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATG
** ** * *
69706964 CAACAAAAAGTAAATGGACCTATACACCTAGGTCTCTAAATG
1 CAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATG
* * * *
69707006 CAATGAAAAGTGAATGGACTTCTACACCTGGGTCTCTAAATG
1 CAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATG
* * *
69707048 GAATGAAAAGTGAATGGACCTCCACACCTGGGCCTCTACATG
1 CAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATG
* * * *
69707090 CAACGAAAAGTAAATGGACCTCCACGCTTGGGCCCCTAAATG
1 CAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATG
* * *
69707132 CAATGAAAAGTGAATGGACTTCCACACCTGGGTCTCTAAATG
1 CAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATG
* * * *
69707174 TAATGAAAAGTGAATGGACCTCCACACCTGGGCCCCTGAATG
1 CAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATG
* * * *
69707216 CAATGAAAAGTAAATGAACCTCCACACTTGGTCCTCTTAATG
1 CAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATG
* * *
69707258 CAATGAAAAGTGAATGAACCTCCACACCTGAGCCTCTAAATG
1 CAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATG
69707300 CAATGAA
1 CAATGAA
69707307 TGCTTTCCTT
Statistics
Matches: 328, Mismatches: 57, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 328 1.00
ACGTcount: A:0.36, C:0.24, G:0.19, T:0.22
Consensus pattern (42 bp):
CAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATG
Found at i:69710515 original size:38 final size:39
Alignment explanation
Indices: 69710433--69710613 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
69710423 AATGTTCGAG
69710433 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
69710472 TGATATCCGGGCTAAGCCCGAAGGCAATTG-GCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
69710510 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
69710549 TGATATCCGGGTTAAGTCCCGAAGGC-TTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
69710588 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
69710614 GTTTGAACGA
Statistics
Matches: 126, Mismatches: 14, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
38 38 0.30
39 79 0.63
40 9 0.07
ACGTcount: A:0.24, C:0.22, G:0.30, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:69718547 original size:39 final size:39
Alignment explanation
Indices: 69718500--69718681 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
69718490 AATGTTCGAG
69718500 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
69718539 TGATATCCGGGCTAAGCCCGAAGGCAATTGGGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
69718578 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
69718617 TGATATCCGGGTTAAGTCCCGAAGGC-TTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
69718656 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
69718682 GTTTGAACGA
Statistics
Matches: 126, Mismatches: 16, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
39 117 0.93
40 9 0.07
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:69731494 original size:40 final size:39
Alignment explanation
Indices: 69731430--69731637 Score: 179
Period size: 40 Copynumber: 5.2 Consensus size: 39
69731420 TCTTCAGAAT
* **
69731430 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAA-TGCCTTCGGGTC
* * *** *
69731469 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCAC-AATGCCTTCGGGTC
69731509 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCAC-AATGCCTTCGGGTC
* * * * *
69731549 TTAGCCCGGATATAATC-ATTAGCATAAATGCCTTTGGGAC
1 TTAGCCCGGATATAA-CAACTCGCA-CAATGCCTTCGGGTC
* * *
69731589 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTCGCA-CAATGCCTTCGGGTC
69731629 TTAGCCCGG
1 TTAGCCCGG
69731638 GTATCATTCA
Statistics
Matches: 143, Mismatches: 22, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.02
40 137 0.96
41 3 0.02
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (39 bp):
TTAGCCCGGATATAACAACTCGCACAATGCCTTCGGGTC
Found at i:69731578 original size:80 final size:78
Alignment explanation
Indices: 69731430--69731637 Score: 231
Period size: 80 Copynumber: 2.6 Consensus size: 78
69731420 TCTTCAGAAT
* * * **
69731430 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCAC
1 TTAGCCCGGATATAA-CACTAGCACAA-TGCCTTCGGGTCTTAGCCCGGATATAATAACTTGCAC
*
69731494 AAATGCCTTCGGGTC
64 AAATGCCTTCGGGAC
* *
69731509 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAATCA-TTAGCA
1 TTAGCCCGGATATAAC-ACTAGCAC-AATGCCTTCGGGTCTTAGCCCGGATATAATAACTT-GCA
* *
69731573 TAAATGCCTTTGGGAC
63 CAAATGCCTTCGGGAC
* *
69731589 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGG
1 TTAGCCCGGATATAA-CACTAGCA-CAATGCCTTCGGGTCTTAGCCCGG
69731638 GTATCATTCA
Statistics
Matches: 110, Mismatches: 13, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
79 7 0.06
80 100 0.91
81 3 0.03
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (78 bp):
TTAGCCCGGATATAACACTAGCACAATGCCTTCGGGTCTTAGCCCGGATATAATAACTTGCACAA
ATGCCTTCGGGAC
Found at i:69733823 original size:42 final size:42
Alignment explanation
Indices: 69733659--69733824 Score: 107
Period size: 42 Copynumber: 3.8 Consensus size: 42
69733649 CCATGTTCTG
* * * * * * *
69733659 GACATGGTCTTACATGGAACTACACATCGATGCCATATCCTA
1 GACATGGTCTTATACGAAACCACATATCGATGCCATGTCCCA
* * * *
69733701 GATATGGTCTTATACGAAGTCTCAAATCAGTGTCGACGCCATGTCCCA
1 GACATGGTCTTATACGAA-AC-C--A-CA-TATCGATGCCATGTCCCA
* * * * *
69733749 GACATGGTCTTTTACGGAACCTCATATAGATGCCATGTTCCA
1 GACATGGTCTTATACGAAACCACATATCGATGCCATGTCCCA
* * *
69733791 GACATGGTCTTATACGAAATCACTTTTCGATGCC
1 GACATGGTCTTATACGAAACCACATATCGATGCC
69733825 GAAGCCATAT
Statistics
Matches: 91, Mismatches: 27, Indels: 12
0.70 0.21 0.09
Matches are distributed among these distances:
42 55 0.60
43 3 0.03
46 2 0.02
47 3 0.03
48 28 0.31
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.29
Consensus pattern (42 bp):
GACATGGTCTTATACGAAACCACATATCGATGCCATGTCCCA
Found at i:69735296 original size:21 final size:22
Alignment explanation
Indices: 69735262--69735308 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 22
69735252 GAAATAATTG
**
69735262 AAAAAGATCAAAACTTTGTTTT
1 AAAAAGATCAAAACTTTCCTTT
*
69735284 AAAAA-ATCTAAACTTTCCTTT
1 AAAAAGATCAAAACTTTCCTTT
69735305 AAAA
1 AAAA
69735309 TGACTAGAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 17 0.77
22 5 0.23
ACGTcount: A:0.49, C:0.13, G:0.04, T:0.34
Consensus pattern (22 bp):
AAAAAGATCAAAACTTTCCTTT
Found at i:69735368 original size:153 final size:154
Alignment explanation
Indices: 69735211--69735519 Score: 383
Period size: 154 Copynumber: 2.0 Consensus size: 154
69735201 AATTTTCTTT
*
69735211 AAAAAACTCATTACTTTTCTCAAAAATCAGAA-CTTTATTTTGAAATAATTGAAAAAGATCAAAA
1 AAAAAACT-ATTACTTTTCTCAAAAATCA-AAGCTTTATTTTGAAATAATTGAAAAAAATCAAAA
* *
69735275 CTTTGTTTTAAAAAATCTAAACTTTCCTTTAAAATGAC-T-AGAAAACATATTTTTATTTTGAAA
64 CTTTGTTTT-AAAAATCTAAACTTTCCTTTAAAATAACTTAAAAAAACATATTTTTATTTTGAAA
*
69735338 ATCTAAACTTTCTCTCTTTTT-TAAAAA
128 ATCTAAAATTTC-CTCTTTTTCTAAAAA
** * * * * *
69735365 AAAAAACTATTTTTTTTCTTAAAGATCAAAGGTTTTTTTTTGAAATAGTTGAAAAAAATCAAAAC
1 AAAAAACTATTACTTTTCTCAAAAATCAAA-GCTTTATTTTGAAATAATTGAAAAAAATCAAAAC
* * * * *
69735430 TTTGTTTTAAAATTTTAAAGTTTCCTTTAAATTAACTTAAAAAAAACATATTTTTATTTTTAAAA
65 TTTGTTTTAAAAATCTAAACTTTCCTTTAAAATAACTT-AAAAAAACATATTTTTATTTTGAAAA
*
69735495 TCTAAAATTTCCTTTTTTTCTAAAA
129 TCTAAAATTTCCTCTTTTTCTAAAA
69735520 GGAAAAATCA
Statistics
Matches: 132, Mismatches: 17, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
152 2 0.02
153 39 0.30
154 46 0.35
155 7 0.05
156 38 0.29
ACGTcount: A:0.42, C:0.11, G:0.05, T:0.42
Consensus pattern (154 bp):
AAAAAACTATTACTTTTCTCAAAAATCAAAGCTTTATTTTGAAATAATTGAAAAAAATCAAAACT
TTGTTTTAAAAATCTAAACTTTCCTTTAAAATAACTTAAAAAAACATATTTTTATTTTGAAAATC
TAAAATTTCCTCTTTTTCTAAAAA
Found at i:69735557 original size:154 final size:154
Alignment explanation
Indices: 69735225--69735557 Score: 365
Period size: 156 Copynumber: 2.2 Consensus size: 154
69735215 AACTCATTAC
* * *
69735225 TTTTCTCAAAAATCAGAA--CTTTATTTTGAAATAATTGAAAAAGATCAAAACTTTGTTTTAAAA
1 TTTTCTCAAAGATCA-AAGCCTTTTTTTTGAAATAATTGAAAAAAATCAAAACTTTGTTTTAAAA
* * *
69735288 AATCTAAACTTTCCTTTAAAATGACTAGAAAACATATTTTTATTTTGAAAATCTAAACTTTCTCT
65 AATCTAAACTTTCCTTTAAAATAACTAAAAAACATATTTTTATTTTGAAAATCTAAAATTTCTCT
**
69735353 CTTTTTTAAAAAAAAAAACTATTTT
130 CTTTTTTAAAAAAAAAAACTAAATT
* ** *
69735378 TTTTCTTAAAGATCAAAGGTTTTTTTTTGAAATAGTTGAAAAAAATCAAAACTTTGTTTT-AAAA
1 TTTTCTCAAAGATCAAAGCCTTTTTTTTGAAATAATTGAAAAAAATCAAAACTTTGTTTTAAAAA
* * * * *
69735442 TTTTAAAGTTTCCTTTAAATTAACTTAAAAAAAACATATTTTTATTTTTAAAATCTAAAATTTC-
66 ATCTAAACTTTCCTTTAAAATAAC-T--AAAAAACATATTTTTATTTTGAAAATCTAAAATTTCT
* **
69735506 CTTTTTTTCTAAAAGGAAAAA-TCAAATT
128 CTCTTTTT-TAAAAAAAAAAACT-AAATT
* *
69735534 TTTTC-CCAAGAT-TAAGCCTTTTTT
1 TTTTCTCAAAGATCAAAGCCTTTTTT
69735558 CCTTAAAAAA
Statistics
Matches: 149, Mismatches: 24, Indels: 13
0.80 0.13 0.07
Matches are distributed among these distances:
152 2 0.01
153 36 0.24
154 47 0.32
155 13 0.09
156 51 0.34
ACGTcount: A:0.41, C:0.11, G:0.06, T:0.43
Consensus pattern (154 bp):
TTTTCTCAAAGATCAAAGCCTTTTTTTTGAAATAATTGAAAAAAATCAAAACTTTGTTTTAAAAA
ATCTAAACTTTCCTTTAAAATAACTAAAAAACATATTTTTATTTTGAAAATCTAAAATTTCTCTC
TTTTTTAAAAAAAAAAACTAAATT
Found at i:69735557 original size:156 final size:154
Alignment explanation
Indices: 69735248--69735538 Score: 372
Period size: 156 Copynumber: 1.9 Consensus size: 154
69735238 CAGAACTTTA
* *
69735248 TTTTGAAATAATTGAAAAAGATCAAAACTTTGTTTTAAAAAATCTAAACTTTCCTTTAAAATGAC
1 TTTTGAAATAATTGAAAAAAATCAAAACTTTGTTTTAAAAAATCTAAACTTTCCTTTAAAATAAC
* * **
69735313 TAGAAAACATATTTTTATTTTGAAAATCTAAACTTTCTCTCTTTTTTAAAAAAAAAAACTATTTT
66 TAAAAAACATATTTTTATTTTGAAAATCTAAAATTTCTCTCTTTTTTAAAAAAAAAAACTAAATT
*
69735378 TTTTCTTAAAGATCAAAGGTTTTT
131 TTTTCTCAAAGATCAAAGGTTTTT
* * * * *
69735402 TTTTGAAATAGTTGAAAAAAATCAAAACTTTGTTTT-AAAATTTTAAAGTTTCCTTTAAATTAAC
1 TTTTGAAATAATTGAAAAAAATCAAAACTTTGTTTTAAAAAATCTAAACTTTCCTTTAAAATAAC
* * **
69735466 TTAAAAAAAACATATTTTTATTTTTAAAATCTAAAATTTC-CTTTTTTTCTAAAAGGAAAAA-TC
66 -T--AAAAAACATATTTTTATTTTGAAAATCTAAAATTTCTCTCTTTTT-TAAAAAAAAAAACT-
69735529 AAATTTTTTC
126 AAATTTTTTC
69735539 CCAAGATTAA
Statistics
Matches: 117, Mismatches: 15, Indels: 8
0.84 0.11 0.06
Matches are distributed among these distances:
153 23 0.20
154 35 0.30
155 8 0.07
156 51 0.44
ACGTcount: A:0.42, C:0.10, G:0.06, T:0.43
Consensus pattern (154 bp):
TTTTGAAATAATTGAAAAAAATCAAAACTTTGTTTTAAAAAATCTAAACTTTCCTTTAAAATAAC
TAAAAAACATATTTTTATTTTGAAAATCTAAAATTTCTCTCTTTTTTAAAAAAAAAAACTAAATT
TTTTCTCAAAGATCAAAGGTTTTT
Found at i:69735724 original size:19 final size:19
Alignment explanation
Indices: 69735700--69735739 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
69735690 GCCTATGGCC
*
69735700 AAGAAAA-AAAAGGAAATAG
1 AAGAAAAGAAAA-AAAATAG
69735719 AAGAAAAGAAAAAAAATAG
1 AAGAAAAGAAAAAAAATAG
69735738 AA
1 AA
69735740 TGCTTGTTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 15 0.79
20 4 0.21
ACGTcount: A:0.78, C:0.00, G:0.17, T:0.05
Consensus pattern (19 bp):
AAGAAAAGAAAAAAAATAG
Found at i:69735903 original size:3 final size:3
Alignment explanation
Indices: 69735854--69735887 Score: 50
Period size: 3 Copynumber: 11.0 Consensus size: 3
69735844 TTAAGAAATG
*
69735854 ATA ATA ATA ATA TCTA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA
69735888 GTAGTGATGA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
3 26 0.93
4 2 0.07
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:69736392 original size:43 final size:43
Alignment explanation
Indices: 69736343--69736442 Score: 182
Period size: 43 Copynumber: 2.3 Consensus size: 43
69736333 ACGCTCCAAA
69736343 AAACGCCGCTAAAGGTCAAGGCCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTAAAGGTCAAGGCCTTTAGCGGCGCTTTTCCCAC
* *
69736386 AAACGCCGCTAAATGTCATGGCCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTAAAGGTCAAGGCCTTTAGCGGCGCTTTTCCCAC
69736429 AAACGCCGCTAAAG
1 AAACGCCGCTAAAG
69736443 ATCATCGCCT
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 54 1.00
ACGTcount: A:0.25, C:0.32, G:0.22, T:0.21
Consensus pattern (43 bp):
AAACGCCGCTAAAGGTCAAGGCCTTTAGCGGCGCTTTTCCCAC
Found at i:69736453 original size:43 final size:42
Alignment explanation
Indices: 69736343--69736455 Score: 181
Period size: 43 Copynumber: 2.6 Consensus size: 42
69736333 ACGCTCCAAA
*
69736343 AAACGCCGCTAAAGGTCAAGGCCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTAAA-GTCATGGCCTTTAGCGGCGCTTTTCCCAC
69736386 AAACGCCGCTAAATGTCATGGCCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTAAA-GTCATGGCCTTTAGCGGCGCTTTTCCCAC
*
69736429 AAACGCCGCTAAAGATCATCGCCTTTA
1 AAACGCCGCTAAAG-TCATGGCCTTTA
69736456 AAAAAATATT
Statistics
Matches: 66, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
42 1 0.02
43 65 0.98
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (42 bp):
AAACGCCGCTAAAGTCATGGCCTTTAGCGGCGCTTTTCCCAC
Found at i:69739643 original size:40 final size:39
Alignment explanation
Indices: 69739566--69739750 Score: 221
Period size: 40 Copynumber: 4.6 Consensus size: 39
69739556 GCTACTCGTT
* * *
69739566 CAAATACCTTCGGACATAGCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGATT-TAGTAACTCGCA
*
69739605 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGATTTAGTAACTCGCA
*
69739645 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * *
69739685 CAAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
69739726 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTC-GGACTTAGCCCGGA
69739751 CATCATTCGA
Statistics
Matches: 131, Mismatches: 10, Indels: 9
0.87 0.07 0.06
Matches are distributed among these distances:
39 13 0.10
40 105 0.80
41 13 0.10
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:69746833 original size:40 final size:39
Alignment explanation
Indices: 69746789--69746972 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 39
69746779 GCTACTCGTT
* * *
69746789 CAAATACCTTCGGGACATAGCCCGATTATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGATT-TAGTAACTCGCA
*
69746829 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCC-GATTTAGTAACTCGCA
* *
69746869 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCACA
1 CAAATGCCTTCGGGA-CTTAG-CCCGATTTAGTAACTCGCA
* * * *
69746909 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAG-CCCGATTTAGTAAC-TCGCA
69746950 CAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
69746973 GACATCATTC
Statistics
Matches: 127, Mismatches: 12, Indels: 11
0.85 0.08 0.07
Matches are distributed among these distances:
39 6 0.05
40 105 0.83
41 16 0.13
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGATTTAGTAACTCGCA
Found at i:69746901 original size:80 final size:81
Alignment explanation
Indices: 69746795--69746974 Score: 217
Period size: 80 Copynumber: 2.2 Consensus size: 81
69746785 CGTTCAAATA
* * * *
69746795 CCTTCGGGACATAGCCC-GATTATAGTAGCTCGCACAAATGCCTTCGGGA-CTTAACCCGGATTT
1 CCTTCGGGACTTAGCCCGGATTATAGTAACTCACACAAATGCCTTC-GGATCTTAACCCGGATAT
*
69746858 AGTAAC-TCGCACAAATG
65 AGTAACTTAGCACAAA-G
* **
69746875 CCTTC-GGATCTTAGTCCGGATT-TAGTAACTCACACAAATGCCTTCGGATCTTAGTCCGGATAT
1 CCTTCGGGA-CTTAGCCCGGATTATAGTAACTCACACAAATGCCTTCGGATCTTAACCCGGATAT
*
69746938 AGTCACTTAGCACAAAG
65 AGTAACTTAGCACAAAG
69746955 CCTTCGGGACTTAGCCCGGA
1 CCTTCGGGACTTAGCCCGGA
69746975 CATCATTCGA
Statistics
Matches: 85, Mismatches: 10, Indels: 10
0.81 0.10 0.10
Matches are distributed among these distances:
79 6 0.07
80 64 0.75
81 15 0.18
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (81 bp):
CCTTCGGGACTTAGCCCGGATTATAGTAACTCACACAAATGCCTTCGGATCTTAACCCGGATATA
GTAACTTAGCACAAAG
Found at i:69749082 original size:40 final size:39
Alignment explanation
Indices: 69749037--69749244 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 39
69749027 CGGAATACAA
*
69749037 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
69749077 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
69749117 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
69749157 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
69749197 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
69749237 CCGGATAT
1 CCGGATAT
69749245 CATTCAATTG
Statistics
Matches: 141, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.03
40 134 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:69749177 original size:80 final size:80
Alignment explanation
Indices: 69749037--69749243 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 80
69749027 CGGAATACAA
* * *
69749037 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
69749101 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * **
69749117 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
69749181 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
69749197 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
69749244 TCATTCAATT
Statistics
Matches: 107, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 3 0.03
80 102 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:69758515 original size:30 final size:30
Alignment explanation
Indices: 69758479--69758579 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
69758469 GACAAGATTG
* * *
69758479 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
69758509 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
69758537 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
69758566 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
69758580 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:69758591 original size:29 final size:28
Alignment explanation
Indices: 69758508--69758583 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
69758498 AAAATTGTAC
* *
69758508 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
69758536 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
69758565 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
69758584 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:69766369 original size:30 final size:30
Alignment explanation
Indices: 69766333--69766433 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
69766323 GACAAGATTG
* * *
69766333 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
69766363 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
69766391 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
69766420 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
69766434 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:69766445 original size:29 final size:28
Alignment explanation
Indices: 69766362--69766437 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
69766352 AAAATTGTAC
* *
69766362 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
69766390 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
69766419 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
69766438 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:69779064 original size:21 final size:20
Alignment explanation
Indices: 69778994--69779070 Score: 73
Period size: 21 Copynumber: 3.7 Consensus size: 20
69778984 AAACCCAACC
* * *
69778994 CATGCATATAATGAGTATAT
1 CATGCATATCATGTGCATAT
*
69779014 CATAGCATATCATGTGCATCT
1 CAT-GCATATCATGTGCATAT
* *
69779035 CTTAACATATCATGTGCATAT
1 CAT-GCATATCATGTGCATAT
69779056 CATGTCATATCATGT
1 CATG-CATATCATGT
69779071 ATAACAATAT
Statistics
Matches: 46, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
20 3 0.07
21 43 0.93
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.36
Consensus pattern (20 bp):
CATGCATATCATGTGCATAT
Found at i:69787867 original size:28 final size:28
Alignment explanation
Indices: 69787802--69787902 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
69787792 ATAGTGAATC
*
69787802 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
69787831 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
69787859 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
69787889 CGCACACTTAGTGC
1 CGCACACTTAGTGC
69787903 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:69790435 original size:24 final size:25
Alignment explanation
Indices: 69790408--69790459 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
69790398 GCCTAGCCTC
*
69790408 TTTTAAT-AACTGGGGCAAAGCCCT
1 TTTTAATAAACTAGGGCAAAGCCCT
**
69790432 TTTTGGTAAACTAGGGCAAAGCCCT
1 TTTTAATAAACTAGGGCAAAGCCCT
69790457 TTT
1 TTT
69790460 CGCACTTCCT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
24 5 0.21
25 19 0.79
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (25 bp):
TTTTAATAAACTAGGGCAAAGCCCT
Found at i:69790534 original size:21 final size:21
Alignment explanation
Indices: 69790507--69790567 Score: 88
Period size: 21 Copynumber: 2.9 Consensus size: 21
69790497 TATAATGAGT
69790507 ATATCATAGCATATCATGTGC
1 ATATCATAGCATATCATGTGC
* *
69790528 ATCTCATAACATATCATGTGC
1 ATATCATAGCATATCATGTGC
69790549 ATATCAT-GTCATATCATGT
1 ATATCATAG-CATATCATGT
69790568 ATAACAATAT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (21 bp):
ATATCATAGCATATCATGTGC
Found at i:69790566 original size:10 final size:10
Alignment explanation
Indices: 69790507--69790567 Score: 61
Period size: 10 Copynumber: 5.9 Consensus size: 10
69790497 TATAATGAGT
69790507 ATATCATAG-C
1 ATATCAT-GTC
69790517 ATATCATGTGC
1 ATATCATGT-C
* **
69790528 ATCTCATAAC
1 ATATCATGTC
69790538 ATATCATGTGC
1 ATATCATGT-C
69790549 ATATCATGTC
1 ATATCATGTC
69790559 ATATCATGT
1 ATATCATGT
69790568 ATAACAATAT
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
9 1 0.02
10 24 0.57
11 17 0.40
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (10 bp):
ATATCATGTC
Found at i:69798258 original size:39 final size:39
Alignment explanation
Indices: 69798215--69798425 Score: 275
Period size: 39 Copynumber: 5.4 Consensus size: 39
69798205 ACTTTTAAGT
* * * *
69798215 ATATATCACATTACACATATAATCATATAATAGTCAAGC
1 ATATATCACAATACTCATATAATCACATAATATTCAAGC
* * *
69798254 ATATACCACAATACTTATATAATCACATAACATTCAAGC
1 ATATATCACAATACTCATATAATCACATAATATTCAAGC
* *
69798293 ATATATCTCAATACTCATATAATCACATAACT-TTCAAAC
1 ATATATCACAATACTCATATAATCACATAA-TATTCAAGC
69798332 ATATATCACAATACTCATATAATCACATACAT-TT-AAGC
1 ATATATCACAATACTCATATAATCACATA-ATATTCAAGC
* *
69798370 ATATATCACAATACTCATATAATCACTTAACATTCAAGC
1 ATATATCACAATACTCATATAATCACATAATATTCAAGC
*
69798409 ATATATCATAATACTCA
1 ATATATCACAATACTCA
69798426 ACAACATGTT
Statistics
Matches: 151, Mismatches: 17, Indels: 8
0.86 0.10 0.05
Matches are distributed among these distances:
37 1 0.01
38 33 0.22
39 116 0.77
40 1 0.01
ACGTcount: A:0.45, C:0.21, G:0.02, T:0.31
Consensus pattern (39 bp):
ATATATCACAATACTCATATAATCACATAATATTCAAGC
Found at i:69798299 original size:78 final size:77
Alignment explanation
Indices: 69798215--69798425 Score: 282
Period size: 77 Copynumber: 2.7 Consensus size: 77
69798205 ACTTTTAAGT
* * * * *
69798215 ATATATCACATTACACATATAATCATATAATAGTCAAGCATATACCACAATACTTATATAATCAC
1 ATATATCACAATACTCATATAATCATATAATATTCAAGCATATATCACAATACTCATATAATCAC
69798280 ATAACATTCAAGC
66 AT-ACATTCAAGC
* * *
69798293 ATATATCTCAATACTCATATAATCACATAACT-TTCAAACATATATCACAATACTCATATAATCA
1 ATATATCACAATACTCATATAATCATATAA-TATTCAAGCATATATCACAATACTCATATAATCA
*
69798357 CATACATTTAAGC
65 CATACATTCAAGC
* *
69798370 ATATATCACAATACTCATATAATCACT-TAACATTCAAGCATATATCATAATACTCA
1 ATATATCACAATACTCATATAATCA-TATAATATTCAAGCATATATCACAATACTCA
69798426 ACAACATGTT
Statistics
Matches: 116, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
77 58 0.50
78 57 0.49
79 1 0.01
ACGTcount: A:0.45, C:0.21, G:0.02, T:0.31
Consensus pattern (77 bp):
ATATATCACAATACTCATATAATCATATAATATTCAAGCATATATCACAATACTCATATAATCAC
ATACATTCAAGC
Found at i:69798352 original size:16 final size:17
Alignment explanation
Indices: 69798331--69798395 Score: 55
Period size: 16 Copynumber: 3.6 Consensus size: 17
69798321 AACTTTCAAA
69798331 CATAT-ATCACAATACT
1 CATATAATCACAATACT
69798347 CATATAATCAC-ATACATTT
1 CATATAATCACAATAC---T
69798366 AAGCATAT-ATCACAATACT
1 ---CATATAATCACAATACT
69798385 CATATAATCAC
1 CATATAATCAC
69798396 TTAACATTCA
Statistics
Matches: 40, Mismatches: 0, Indels: 17
0.70 0.00 0.30
Matches are distributed among these distances:
16 14 0.35
17 10 0.25
19 2 0.05
21 5 0.12
22 9 0.22
ACGTcount: A:0.45, C:0.23, G:0.02, T:0.31
Consensus pattern (17 bp):
CATATAATCACAATACT
Found at i:69798410 original size:116 final size:116
Alignment explanation
Indices: 69798215--69798425 Score: 318
Period size: 116 Copynumber: 1.8 Consensus size: 116
69798205 ACTTTTAAGT
* * *
69798215 ATATATCACATTACACATATAATCATATAATAGTCAAGCATATACCACAATACTTATATAATCAC
1 ATATATCACAATACACATATAATCACATAATA-TCAAGCATATACCACAATACTCATATAATCAC
69798280 ATAACATTCAAGCATATATC-TCAATACTCATATAATCACATAACTTTCAAAC
65 ATAACATTCAAGCATATATCAT-AATACTCATATAATCACATAACTTTCAAAC
* * *
69798332 ATATATCACAATACTCATATAATCACATACAT-TTAAGCATATATCACAATACTCATATAATCAC
1 ATATATCACAATACACATATAATCACATA-ATATCAAGCATATACCACAATACTCATATAATCAC
*
69798396 TTAACATTCAAGCATATATCATAATACTCA
65 ATAACATTCAAGCATATATCATAATACTCA
69798426 ACAACATGTT
Statistics
Matches: 85, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
116 56 0.66
117 27 0.32
118 2 0.02
ACGTcount: A:0.45, C:0.21, G:0.02, T:0.31
Consensus pattern (116 bp):
ATATATCACAATACACATATAATCACATAATATCAAGCATATACCACAATACTCATATAATCACA
TAACATTCAAGCATATATCATAATACTCATATAATCACATAACTTTCAAAC
Found at i:69801726 original size:33 final size:33
Alignment explanation
Indices: 69801627--69801726 Score: 119
Period size: 33 Copynumber: 3.0 Consensus size: 33
69801617 CAATGAAGTG
69801627 TCTCTATTTTGTGTTTACTGTCCCAGCAGACTA
1 TCTCTATTTTGTGTTTACTGTCCCAGCAGACTA
* * * * * **
69801660 CCTCTAATTTGTGTCTACGGTCCTAGTGGACTA
1 TCTCTATTTTGTGTTTACTGTCCCAGCAGACTA
* *
69801693 TCTCTATTTTGTGTTTACTATCCCAACAGACTA
1 TCTCTATTTTGTGTTTACTGTCCCAGCAGACTA
69801726 T
1 T
69801727 GTTTACTGTC
Statistics
Matches: 51, Mismatches: 16, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
33 51 1.00
ACGTcount: A:0.20, C:0.24, G:0.15, T:0.41
Consensus pattern (33 bp):
TCTCTATTTTGTGTTTACTGTCCCAGCAGACTA
Found at i:69801731 original size:22 final size:22
Alignment explanation
Indices: 69801704--69801748 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
69801694 CTCTATTTTG
69801704 TGTTTACTATCCCAACAGACTA
1 TGTTTACTATCCCAACAGACTA
*
69801726 TGTTTACTGTCCCAACAGACTA
1 TGTTTACTATCCCAACAGACTA
69801748 T
1 T
69801749 CTCCATGGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.29, C:0.27, G:0.11, T:0.33
Consensus pattern (22 bp):
TGTTTACTATCCCAACAGACTA
Found at i:69809892 original size:47 final size:47
Alignment explanation
Indices: 69809838--69810266 Score: 660
Period size: 47 Copynumber: 9.1 Consensus size: 47
69809828 TTAGGATTTT
** *
69809838 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
69809885 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * **
69809932 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCTT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
69809979 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
69810026 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
69810073 ATATGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
69810120 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
69810167 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
69810214 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGTCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
69810261 ATGTGA
1 ATGTGA
69810267 AATATATATA
Statistics
Matches: 345, Mismatches: 37, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 345 1.00
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:69809940 original size:25 final size:25
Alignment explanation
Indices: 69809865--69809940 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
69809855 GTGTATATAT
69809865 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
69809890 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
69809912 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
69809937 GTGA
1 GTGA
69809941 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:69810060 original size:141 final size:141
Alignment explanation
Indices: 69809836--69810257 Score: 781
Period size: 141 Copynumber: 3.0 Consensus size: 141
69809826 ATTTAGGATT
** *
69809836 TTATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAG
1 TTATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAG
69809901 CATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAA
66 CATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAA
69809966 GGCCGAATGGC
131 GGCCGAATGGC
69809977 TTATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAG
1 TTATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAG
*
69810042 CATGCATATGTGTGATAAGGCCGAATGGCCAATATGGTGAATATGAACATGCATATATGTGATAA
66 CATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAA
69810107 GGCCGAATGGC
131 GGCCGAATGGC
*
69810118 CTATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAG
1 TTATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAG
*
69810183 CATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGGTAA
66 CATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAA
*
69810248 AGCCGAATGG
131 GGCCGAATGG
69810258 TCAATGTGAA
Statistics
Matches: 273, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
141 273 1.00
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.27
Consensus pattern (141 bp):
TTATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAG
CATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAA
GGCCGAATGGC
Found at i:69810222 original size:25 final size:25
Alignment explanation
Indices: 69810147--69810222 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
69810137 ATGCATATAT
69810147 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
69810172 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
69810194 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
69810219 GTGA
1 GTGA
69810223 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:69810317 original size:94 final size:91
Alignment explanation
Indices: 69809859--69810322 Score: 491
Period size: 94 Copynumber: 4.9 Consensus size: 91
69809849 GTGAATGTGT
* * *
69809859 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCG
1 ATATATGTGATAAAGCCGAATGGCCAATGTGATGAATATGAGCATGTATATGTG-G-TAAGGCCG
*
69809924 AATGGCCAATGTGGTGAATATGAACATGC
64 AATGGCCTATGT-GTGAATATGAACATGC
* ** * * *
69809953 ATATATGTGATAAGGCCGAATGGCTTATGTGATGAATGTGAACATGCATATATGTGATAAGGCCG
1 ATATATGTGATAAAGCCGAATGGCCAATGTGATGAATATGAGCATG--TATATGTGGTAAGGCCG
* * *
69810018 AATGGCCAATGTGATGAATGTGAGCATGC
64 AATGGCCTATGTG-TGAATATGAACATGC
* * * * * *
69810047 ATATGTGTGATAAGGCCGAATGGCCAATATGGTGAATATGAACATGCATATATGTGATAAGGCCG
1 ATATATGTGATAAAGCCGAATGGCCAATGTGATGAATATGAGCATG--TATATGTGGTAAGGCCG
*
69810112 AATGGCCTATGTGATGAATGTGAACATGC
64 AATGGCCTATGTG-TGAATATGAACATGC
* * *
69810141 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCG
1 ATATATGTGATAAAGCCGAATGGCCAATGTGATGAATATGAGCATGTATATGTG-G-TAAGGCCG
*
69810206 AATGGCCAATGTGGTGAATATGAACATGC
64 AATGGCCTATGT-GTGAATATGAACATGC
* * * * *
69810235 ATATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAG
1 ATATATGTGATAAAGCCGAATGGCCAATGTG--AT-GA-ATATGAG-CATGTATATGTGGTAAGG
69810300 CCGAATGG-CTA-GTGTGAAATATG
61 CCGAATGGCCTATGTGTG-AATATG
69810323 TAGGTGATGT
Statistics
Matches: 325, Mismatches: 33, Indels: 23
0.85 0.09 0.06
Matches are distributed among these distances:
92 7 0.02
93 1 0.00
94 267 0.82
95 9 0.03
96 11 0.03
97 13 0.04
98 7 0.02
99 10 0.03
ACGTcount: A:0.33, C:0.11, G:0.28, T:0.27
Consensus pattern (91 bp):
ATATATGTGATAAAGCCGAATGGCCAATGTGATGAATATGAGCATGTATATGTGGTAAGGCCGAA
TGGCCTATGTGTGAATATGAACATGC
Found at i:69811855 original size:27 final size:27
Alignment explanation
Indices: 69811735--69811842 Score: 135
Period size: 27 Copynumber: 4.0 Consensus size: 27
69811725 AAGGGCAAAA
* * * *
69811735 CAGTTATTTTACCCTACAGGGGTATGT
1 CAGTAATTTTACACTACAAGGGTATTT
* *
69811762 CGGTCATTTTACACTACAAGGGTATTT
1 CAGTAATTTTACACTACAAGGGTATTT
69811789 CAGTAATTTTACACTACAAGGGTATTT
1 CAGTAATTTTACACTACAAGGGTATTT
* * *
69811816 CAGTAATATTACACTATAATGGTATTT
1 CAGTAATTTTACACTACAAGGGTATTT
69811843 TGATGATTTT
Statistics
Matches: 71, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 71 1.00
ACGTcount: A:0.30, C:0.16, G:0.17, T:0.38
Consensus pattern (27 bp):
CAGTAATTTTACACTACAAGGGTATTT
Found at i:69811893 original size:53 final size:53
Alignment explanation
Indices: 69811836--69812481 Score: 562
Period size: 54 Copynumber: 12.3 Consensus size: 53
69811826 ACACTATAAT
* * *
69811836 GGTATTTTGATGATTTTACAAATCGGGGGTGTTTCGTAATTTTACAAATCGAG
1 GGTATTTTGATAATTTTACAAATCGAGGGTATTTCGTAATTTTACAAATCGAG
* *
69811889 GGTATTTTCATAATTTTATAAATCGA-GG------GT-A---TACAAATCGAG
1 GGTATTTTGATAATTTTACAAATCGAGGGTATTTCGTAATTTTACAAATCGAG
* * * * *
69811931 GGTGTTTTGGTAATTTTACAAATCGAGGTTGTTTCGATAATTTTACAAATCGGG
1 GGTATTTTGATAATTTTACAAATCGAGGGTATTTCG-TAATTTTACAAATCGAG
* * * *
69811985 GGTATTTTGATAATTTTACAAATCAAGGGTGTTTTGGTAATTTTACAAATCGAA
1 GGTATTTTGATAATTTTACAAATCGAGGGT-ATTTCGTAATTTTACAAATCGAG
* * * *
69812039 GGTGTTTCGATAATTTCACAAAT-TAGGGGTATTTCGGTAATTTTACAAATCGAG
1 GGTATTTTGATAATTTTACAAATCGA-GGGTATTTC-GTAATTTTACAAATCGAG
* * * * * * *
69812093 AGTA-TTTCAGTAATTTCAC-AATTGAGGGTATTTCAATAATTTTATAAATCGAA
1 GGTATTTTGA-TAATTTTACAAATCGAGGGTATTTC-GTAATTTTACAAATCGAG
* * * * * *
69812146 GGTATTTCGGTAATTTCAC-AATCAAGGGTATTTTAGTAATTTTACAAATTGAG
1 GGTATTTTGATAATTTTACAAATCGAGGGTA-TTTCGTAATTTTACAAATCGAG
* *
69812199 GGTA-TTTCAGTAATTTCAC-AATCGAGGGTATTTCGATAATTTTACAAATCGAG
1 GGTATTTTGA-TAATTTTACAAATCGAGGGTATTTCG-TAATTTTACAAATCGAG
* * * * *
69812252 GTTATTTTGGTAATTTTACAAATTGAAGGTATTTCGGTAATTTTACAAATCGAT
1 GGTATTTTGATAATTTTACAAATCGAGGGTATTTC-GTAATTTTACAAATCGAG
* *
69812306 GGTA-TTTCAGTAATTTTACAAATCGAGGGTATTTCGATAATTTCAC-AATCGAG
1 GGTATTTTGA-TAATTTTACAAATCGAGGGTATTTCG-TAATTTTACAAATCGAG
* * *
69812359 GGTA-TTTCAGTAATTTCAC-AATCGATGGTATTTCGGTAATTTTACAAATCGAG
1 GGTATTTTGA-TAATTTTACAAATCGAGGGTATTTC-GTAATTTTACAAATCGAG
* * * * *
69812412 GGTATTTCGGTAATTTTACAAATCGAGAGTATTTTGGTAATTTTACAAATCAAG
1 GGTATTTTGATAATTTTACAAATCGAGGGTA-TTTCGTAATTTTACAAATCGAG
69812466 GGTATTTT-AGTAATTT
1 GGTATTTTGA-TAATTT
69812482 CTCTTTATTA
Statistics
Matches: 483, Mismatches: 78, Indels: 63
0.77 0.12 0.10
Matches are distributed among these distances:
42 33 0.07
43 1 0.00
45 1 0.00
46 2 0.00
49 1 0.00
50 1 0.00
51 1 0.00
52 30 0.06
53 189 0.39
54 216 0.45
55 8 0.02
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.39
Consensus pattern (53 bp):
GGTATTTTGATAATTTTACAAATCGAGGGTATTTCGTAATTTTACAAATCGAG
Found at i:69811905 original size:27 final size:27
Alignment explanation
Indices: 69811836--69811920 Score: 109
Period size: 27 Copynumber: 3.2 Consensus size: 27
69811826 ACACTATAAT
* * *
69811836 GGTATTTTGATGATTTTACAAATCGGG
1 GGTATTTTCATAATTTTACAAATCGAG
* *
69811863 GGT-GTTTCGTAATTTTACAAATCGAG
1 GGTATTTTCATAATTTTACAAATCGAG
*
69811889 GGTATTTTCATAATTTTATAAATCGAG
1 GGTATTTTCATAATTTTACAAATCGAG
69811916 GGTAT
1 GGTAT
69811921 ACAAATCGAG
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
26 21 0.43
27 28 0.57
ACGTcount: A:0.28, C:0.08, G:0.22, T:0.41
Consensus pattern (27 bp):
GGTATTTTCATAATTTTACAAATCGAG
Found at i:69811925 original size:42 final size:42
Alignment explanation
Indices: 69811878--69811958 Score: 126
Period size: 42 Copynumber: 1.9 Consensus size: 42
69811868 TTCGTAATTT
*
69811878 TACAAATCGAGGGTATTTTCATAATTTTATAAATCGAGGGTA
1 TACAAATCGAGGGTATTTTCATAATTTTACAAATCGAGGGTA
* **
69811920 TACAAATCGAGGGTGTTTTGGTAATTTTACAAATCGAGG
1 TACAAATCGAGGGTATTTTCATAATTTTACAAATCGAGG
69811959 TTGTTTCGAT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.33, C:0.10, G:0.22, T:0.35
Consensus pattern (42 bp):
TACAAATCGAGGGTATTTTCATAATTTTACAAATCGAGGGTA
Found at i:69811956 original size:69 final size:68
Alignment explanation
Indices: 69811852--69811989 Score: 199
Period size: 69 Copynumber: 2.0 Consensus size: 68
69811842 TTGATGATTT
* *
69811852 TACAAATCGGGGGTGTTTCGTAATTTTACAAATCGAGGGTAT-TTTC-ATAATTTTATAAATCGA
1 TACAAATCGAGGGTGTTTCGTAATTTTACAAATCGA-GGT-TGTTTCGATAATTTTACAAATCGA
69811915 GGGTA
64 GGGTA
* *
69811920 TACAAATCGAGGGTGTTTTGGTAATTTTACAAATCGAGGTTGTTTCGATAATTTTACAAATCGGG
1 TACAAATCGAGGGTG-TTTCGTAATTTTACAAATCGAGGTTGTTTCGATAATTTTACAAATCGAG
69811985 GGTA
65 GGTA
69811989 T
1 T
69811990 TTTGATAATT
Statistics
Matches: 63, Mismatches: 4, Indels: 5
0.88 0.06 0.07
Matches are distributed among these distances:
67 1 0.02
68 21 0.33
69 41 0.65
ACGTcount: A:0.30, C:0.10, G:0.23, T:0.37
Consensus pattern (68 bp):
TACAAATCGAGGGTGTTTCGTAATTTTACAAATCGAGGTTGTTTCGATAATTTTACAAATCGAGG
GTA
Found at i:69811958 original size:27 final size:27
Alignment explanation
Indices: 69811920--69812481 Score: 641
Period size: 27 Copynumber: 21.0 Consensus size: 27
69811910 ATCGAGGGTA
* *
69811920 TACAAATCGAGGGTGTTTTGGTAATTT
1 TACAAATCGAGGGTATTTCGGTAATTT
* * *
69811947 TACAAATCGAGGTTGTTTCGATAATTT
1 TACAAATCGAGGGTATTTCGGTAATTT
* * *
69811974 TACAAATCGGGGGTATTTTGATAATTT
1 TACAAATCGAGGGTATTTCGGTAATTT
* * *
69812001 TACAAATCAAGGGTGTTTTGGTAATTT
1 TACAAATCGAGGGTATTTCGGTAATTT
* * *
69812028 TACAAATCGAAGGTGTTTCGATAATTT
1 TACAAATCGAGGGTATTTCGGTAATTT
* *
69812055 CACAAAT-TAGGGGTATTTCGGTAATTT
1 TACAAATCGA-GGGTATTTCGGTAATTT
* *
69812082 TACAAATCGAGAGTATTTCAGTAATTT
1 TACAAATCGAGGGTATTTCGGTAATTT
* * **
69812109 CAC-AATTGAGGGTATTTCAATAATTT
1 TACAAATCGAGGGTATTTCGGTAATTT
* *
69812135 TATAAATCGAAGGTATTTCGGTAATTT
1 TACAAATCGAGGGTATTTCGGTAATTT
* * **
69812162 CAC-AATCAAGGGTATTTTAGTAATTT
1 TACAAATCGAGGGTATTTCGGTAATTT
* *
69812188 TACAAATTGAGGGTATTTCAGTAATTT
1 TACAAATCGAGGGTATTTCGGTAATTT
* *
69812215 CAC-AATCGAGGGTATTTCGATAATTT
1 TACAAATCGAGGGTATTTCGGTAATTT
* *
69812241 TACAAATCGAGGTTATTTTGGTAATTT
1 TACAAATCGAGGGTATTTCGGTAATTT
* *
69812268 TACAAATTGAAGGTATTTCGGTAATTT
1 TACAAATCGAGGGTATTTCGGTAATTT
* *
69812295 TACAAATCGATGGTATTTCAGTAATTT
1 TACAAATCGAGGGTATTTCGGTAATTT
*
69812322 TACAAATCGAGGGTATTTCGATAATTT
1 TACAAATCGAGGGTATTTCGGTAATTT
* *
69812349 CAC-AATCGAGGGTATTTCAGTAATTT
1 TACAAATCGAGGGTATTTCGGTAATTT
* *
69812375 CAC-AATCGATGGTATTTCGGTAATTT
1 TACAAATCGAGGGTATTTCGGTAATTT
69812401 TACAAATCGAGGGTATTTCGGTAATTT
1 TACAAATCGAGGGTATTTCGGTAATTT
* *
69812428 TACAAATCGAGAGTATTTTGGTAATTT
1 TACAAATCGAGGGTATTTCGGTAATTT
* **
69812455 TACAAATCAAGGGTATTTTAGTAATTT
1 TACAAATCGAGGGTATTTCGGTAATTT
69812482 CTCTTTATTA
Statistics
Matches: 455, Mismatches: 74, Indels: 12
0.84 0.14 0.02
Matches are distributed among these distances:
26 112 0.25
27 342 0.75
28 1 0.00
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (27 bp):
TACAAATCGAGGGTATTTCGGTAATTT
Found at i:69812188 original size:160 final size:161
Alignment explanation
Indices: 69811920--69812482 Score: 683
Period size: 160 Copynumber: 3.5 Consensus size: 161
69811910 ATCGAGGGTA
* * * * **
69811920 TACAAATCGAGGGTGTTTTGGTAATTTTACAAATCGAGGTTGTTTCGATAATTTTACAAATCGGG
1 TACAAATCGAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATCGAA
* * * * * *
69811985 GGTATTT-TGATAATTTTACAAATCAAGGGTGTTTTGGTAATTTTACAAATCGAAGGTGTTTC-G
66 GGTATTTCAG-TAATTTCACAAATCAAGGGTATTTTAGTAATTTTACAAATCGAGGGTATTTCAG
*
69812048 ATAATTTCACAAAT-TAGGGGTATTTCGGTAATTT
130 -TAATTTCAC-AATCGA-GGGTATTTCGGTAATTT
* * * * * *
69812082 TACAAATCGAGAGTATTTCAGTAATTTCAC-AATTGAGGGTATTTCAATAATTTTATAAATCGAA
1 TACAAATCGAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATCGAA
* *
69812146 GGTATTTCGGTAATTTCAC-AATCAAGGGTATTTTAGTAATTTTACAAATTGAGGGTATTTCAGT
66 GGTATTTCAGTAATTTCACAAATCAAGGGTATTTTAGTAATTTTACAAATCGAGGGTATTTCAGT
*
69812210 AATTTCACAATCGAGGGTATTTCGATAATTT
131 AATTTCACAATCGAGGGTATTTCGGTAATTT
* * * * * *
69812241 TACAAATCGAGGTTATTTTGGTAATTTTACAAATTGAAGGTATTTCGGTAATTTTACAAATCGAT
1 TACAAATCGAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATCGAA
* * * *
69812306 GGTATTTCAGTAATTTTACAAATCGAGGGTA-TTTCGATAATTTCAC-AATCGAGGGTATTTCAG
66 GGTATTTCAGTAATTTCACAAATCAAGGGTATTTTAG-TAATTTTACAAATCGAGGGTATTTCAG
*
69812369 TAATTTCACAATCGATGGTATTTCGGTAATTT
130 TAATTTCACAATCGAGGGTATTTCGGTAATTT
* * *
69812401 TACAAATCGAGGGTATTTCGGTAATTTTACAAATCGAGAGTATTTTGGTAATTTTACAAATC-AA
1 TACAAATCGAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATCGAA
*
69812465 GGGTATTTTAGTAATTTC
66 -GGTATTTCAGTAATTTC
69812483 TCTTTATTAT
Statistics
Matches: 346, Mismatches: 48, Indels: 16
0.84 0.12 0.04
Matches are distributed among these distances:
159 45 0.13
160 214 0.62
161 61 0.18
162 26 0.08
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (161 bp):
TACAAATCGAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATCGAA
GGTATTTCAGTAATTTCACAAATCAAGGGTATTTTAGTAATTTTACAAATCGAGGGTATTTCAGT
AATTTCACAATCGAGGGTATTTCGGTAATTT
Found at i:69820315 original size:28 final size:27
Alignment explanation
Indices: 69820252--69820318 Score: 116
Period size: 27 Copynumber: 2.4 Consensus size: 27
69820242 ATAGTGAGTC
69820252 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
69820279 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
69820307 CGCACACTTAGT
1 CGCACACTTAGT
69820319 TCTGTACAAA
Statistics
Matches: 38, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:69832121 original size:31 final size:31
Alignment explanation
Indices: 69832083--69832142 Score: 120
Period size: 31 Copynumber: 1.9 Consensus size: 31
69832073 CTCATCTAAG
69832083 ATAAATTACATGGTGTTTTGTTATGTGACGA
1 ATAAATTACATGGTGTTTTGTTATGTGACGA
69832114 ATAAATTACATGGTGTTTTGTTATGTGAC
1 ATAAATTACATGGTGTTTTGTTATGTGAC
69832143 TAACTCATTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.28, C:0.07, G:0.22, T:0.43
Consensus pattern (31 bp):
ATAAATTACATGGTGTTTTGTTATGTGACGA
Found at i:69836132 original size:40 final size:39
Alignment explanation
Indices: 69835967--69836150 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
69835957 AAATTGAATG
* * *
69835967 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
69836007 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
69836047 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
69836087 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
69836126 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
69836151 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:69836175 original size:80 final size:81
Alignment explanation
Indices: 69836007--69836195 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
69835997 GCTGGAAATT
* * * *
69836007 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
69836072 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
69836088 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
69836151 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
69836167 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
69836196 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:69839906 original size:6 final size:6
Alignment explanation
Indices: 69839895--69839924 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
69839885 CCATTTTCTC
69839895 CATTTT CATTTT CATTTT CATTTT CATTTT
1 CATTTT CATTTT CATTTT CATTTT CATTTT
69839925 GGAGAAAACT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.17, C:0.17, G:0.00, T:0.67
Consensus pattern (6 bp):
CATTTT
Found at i:69841274 original size:28 final size:29
Alignment explanation
Indices: 69841226--69841288 Score: 94
Period size: 28 Copynumber: 2.2 Consensus size: 29
69841216 GTGATAGAGT
*
69841226 CACCAGATACAGATATTTTGTGGCAGT-GC
1 CACCAGATACAGATAATTTGTGGCA-TAGC
69841255 CACCAGA-ACAGATAATTTGTGGCATAGC
1 CACCAGATACAGATAATTTGTGGCATAGC
69841283 CACCAG
1 CACCAG
69841289 GACGCTTCCT
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
27 1 0.03
28 24 0.75
29 7 0.22
ACGTcount: A:0.32, C:0.24, G:0.22, T:0.22
Consensus pattern (29 bp):
CACCAGATACAGATAATTTGTGGCATAGC
Found at i:69851124 original size:27 final size:27
Alignment explanation
Indices: 69851083--69851136 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
69851073 CATCAAGTAA
* *
69851083 ACATAGATGATCTTATCTTGCAATATT
1 ACATAGATGAGCTTATCATGCAATATT
69851110 ACATAGATGAGCTTATCATGCAATATT
1 ACATAGATGAGCTTATCATGCAATATT
69851137 CTTTCAAGAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.35, C:0.15, G:0.13, T:0.37
Consensus pattern (27 bp):
ACATAGATGAGCTTATCATGCAATATT
Found at i:69856214 original size:28 final size:28
Alignment explanation
Indices: 69856169--69856227 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
69856159 AGTAGTTAGA
* * * *
69856169 CCTGATGGGCCATATGAATGTGATTGGG
1 CCTGATAGGCCACATGAACGAGATTGGG
*
69856197 CCTGATAGGCCACGTGAACGAGATTGGG
1 CCTGATAGGCCACATGAACGAGATTGGG
69856225 CCT
1 CCT
69856228 AAAAGGGCCA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.22, C:0.20, G:0.34, T:0.24
Consensus pattern (28 bp):
CCTGATAGGCCACATGAACGAGATTGGG
Found at i:69856581 original size:27 final size:27
Alignment explanation
Indices: 69856543--69857002 Score: 489
Period size: 27 Copynumber: 17.1 Consensus size: 27
69856533 TGATAAAGCG
*
69856543 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
69856570 AAATTACCGAAATACCC-CTGATTTGTA
1 AAATTACCGAAATACCCTC-GATTTGTA
* * *
69856597 AAATTATCAAAATGCCCTCGA-TTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
*
69856623 AAATTACCAAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * * *
69856650 AAATTATCGAAATACCC-CTAATTTTTG
1 AAATTACCGAAATACCCTC-GATTTGTA
* * *
69856677 AAATTATCGAAACACCCTTGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
*
69856704 AAATTACAGAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
*** * *
69856731 AAATTATAAAAATACCCTC-AATTGTG
1 AAATTACCGAAATACCCTCGATTTGTA
**
69856757 AAATTACTAAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
** * * *
69856784 AAATTATTGAAATACCCCCGATTCGTG
1 AAATTACCGAAATACCCTCGATTTGTA
* * * *
69856811 AAATTATCGAAACACCTTTGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
69856838 AAATTACC-AACACACCCTCAATTTGTA
1 AAATTACCGAA-ATACCCTCGATTTGTA
* *
69856865 AAATTATCGAAACACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
69856892 AAATTTCCAAAATACCCTTGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
*
69856919 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
69856946 AAATTATCGAAATACTCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
69856973 AAATTACCGAAACACCCTCAATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
69857000 AAA
1 AAA
69857003 AAGAAAGACG
Statistics
Matches: 363, Mismatches: 62, Indels: 16
0.82 0.14 0.04
Matches are distributed among these distances:
26 50 0.14
27 310 0.85
28 3 0.01
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.32
Consensus pattern (27 bp):
AAATTACCGAAATACCCTCGATTTGTA
Found at i:69860840 original size:28 final size:28
Alignment explanation
Indices: 69860775--69860875 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
69860765 ATAGTGAATC
*
69860775 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
69860804 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
69860832 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
69860862 CGCACACTTAGTGC
1 CGCACACTTAGTGC
69860876 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:69868759 original size:28 final size:28
Alignment explanation
Indices: 69868694--69868794 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
69868684 ATAGTGAATC
*
69868694 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
69868723 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
69868751 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
69868781 CGCACACTTAGTGC
1 CGCACACTTAGTGC
69868795 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Done.