Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 222 of 318
Found at i:69871789 original size:39 final size:41
Alignment explanation
Indices: 69871688--69871836 Score: 134
Period size: 40 Copynumber: 3.7 Consensus size: 41
69871678 CATATCTACA
*
69871688 ATGCCAACGTCCCAGA-ATGGTCTTACATGTAACTCAC--ATCG
1 ATGCCAATGT-CCAGACATGGTCTTACA-GTAA-TCACATATCG
*
69871729 ATGCC-ATGTCCAGACAGGGTCTTACA-TAATCACATATCG
1 ATGCCAATGTCCAGACATGGTCTTACAGTAATCACATATCG
* *
69871768 ATGCCAATGTCCAGA-TTGGTCTTACACGTAAT-AGCATATAG
1 ATGCCAATGTCCAGACATGGTCTTACA-GTAATCA-CATATCG
*
69871809 AT-CCAATCTCCAGACGTATGGTCTTACA
1 ATGCCAATGTCCAGAC--ATGGTCTTACA
69871837 CATAGTCTTA
Statistics
Matches: 91, Mismatches: 7, Indels: 18
0.78 0.06 0.16
Matches are distributed among these distances:
37 4 0.04
38 3 0.03
39 23 0.25
40 34 0.37
41 17 0.19
43 10 0.11
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (41 bp):
ATGCCAATGTCCAGACATGGTCTTACAGTAATCACATATCG
Found at i:69874610 original size:29 final size:29
Alignment explanation
Indices: 69874508--69874609 Score: 125
Period size: 29 Copynumber: 3.5 Consensus size: 29
69874498 GTGACGAGAT
69874508 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
69874537 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
69874566 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
69874595 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
69874610 GGGTTTAAAA
Statistics
Matches: 62, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
29 61 0.98
30 1 0.02
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:69874666 original size:28 final size:28
Alignment explanation
Indices: 69874597--69874697 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
69874587 GAAGGGTATG
* * * *
69874597 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
69874627 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
69874655 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
69874684 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
69874698 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:69876527 original size:43 final size:43
Alignment explanation
Indices: 69876461--69876666 Score: 220
Period size: 43 Copynumber: 4.8 Consensus size: 43
69876451 ATATCGTACA
* * * *
69876461 ATGCCAACGTCCCAGACATGGTCTTACATGTAACCTCACATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAAACACATATCG
*
69876504 ATGCC-ACTGTCCCAGACAG-GGTCTTAC-TCATAAACACATATCG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACAT-GTAAACACATATCG
* * *
69876547 ATGCCAATGTCCCAGACGTGGTCTTACACGTAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAAACACATATCG
* ** * *
69876590 ATGCCAACATCCCAGACGTGGTCTTACACATAATCACATATTG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAAACACATATCG
* * *
69876633 ATGCCAGCGTCCCAGACGTGGTTTTACACGTAAA
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAAA
69876667 TATCACATAT
Statistics
Matches: 139, Mismatches: 18, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
42 4 0.03
43 134 0.96
44 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.24
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGTAAACACATATCG
Found at i:69876606 original size:86 final size:86
Alignment explanation
Indices: 69876461--69876665 Score: 270
Period size: 86 Copynumber: 2.4 Consensus size: 86
69876451 ATATCGTACA
* * * *
69876461 ATGCCAACGTCCCAGACATGGTCTTACATGTAACCTCACATCGATGCCACTGTCCCAGACAG-GG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAACCACACATCGATGCCACTATCCCAGAC-GTGG
*
69876525 TCTTACTCATAAACACATATCG
65 TCTTACACATAAACACATATCG
* * *
69876547 ATGCCAATGTCCCAGACGTGGTCTTACACGTAATCACATATCGATGCCAAC-ATCCCAGACGTGG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAACCACACATCGATGCC-ACTATCCCAGACGTGG
* *
69876611 TCTTACACATAATCACATATTG
65 TCTTACACATAAACACATATCG
* *
69876633 ATGCCAGCGTCCCAGACGTGGTTTTACACGTAA
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAA
69876666 ATATCACATA
Statistics
Matches: 104, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
85 1 0.01
86 101 0.97
87 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (86 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAACCACACATCGATGCCACTATCCCAGACGTGGT
CTTACACATAAACACATATCG
Found at i:69881841 original size:25 final size:24
Alignment explanation
Indices: 69881794--69881847 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 24
69881784 TAGTTTTCTC
*
69881794 TTAATTTTTAATTTTATTCAATTA
1 TTAATTTTTAATTTCATTCAATTA
*
69881818 GTTAATTTTTCAA-TTCATTGAATTA
1 -TTAATTTTT-AATTTCATTCAATTA
69881843 TTAAT
1 TTAAT
69881848 AATTTTTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
24 5 0.19
25 19 0.73
26 2 0.08
ACGTcount: A:0.33, C:0.06, G:0.04, T:0.57
Consensus pattern (24 bp):
TTAATTTTTAATTTCATTCAATTA
Found at i:69889167 original size:43 final size:42
Alignment explanation
Indices: 69889117--69889225 Score: 148
Period size: 43 Copynumber: 2.6 Consensus size: 42
69889107 CCATATCCCG
* *
69889117 GATATGGTCTTACATGTAATCTCTTATCGATGCCAATAACCTA
1 GATATGGTCTTACACGTAATCTCATATCGATGCC-ATAACCTA
* * *
69889160 GTTATGGTCTTACACG-AAGCCTCATATCGATGCCATATCCTA
1 GATATGGTCTTACACGTAA-TCTCATATCGATGCCATAACCTA
69889202 GATATGGTCTTACACGTAATCTCA
1 GATATGGTCTTACACGTAATCTCA
69889226 GTAATCCTAA
Statistics
Matches: 57, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
42 28 0.49
43 29 0.51
ACGTcount: A:0.28, C:0.23, G:0.16, T:0.33
Consensus pattern (42 bp):
GATATGGTCTTACACGTAATCTCATATCGATGCCATAACCTA
Found at i:69889215 original size:42 final size:42
Alignment explanation
Indices: 69889104--69889225 Score: 147
Period size: 43 Copynumber: 2.9 Consensus size: 42
69889094 CACCGTACCA
** * * *
69889104 ATGCCATATCCCGGATATGGTCTTACATGTAATCTCTTATCG
1 ATGCCATATCCTAGATATGGTCTTACACGTAACCTCATATCG
* *
69889146 ATGCCAATAACCTAGTTATGGTCTTACACG-AAGCCTCATATCG
1 ATGCC-ATATCCTAGATATGGTCTTACACGTAA-CCTCATATCG
*
69889189 ATGCCATATCCTAGATATGGTCTTACACGTAATCTCA
1 ATGCCATATCCTAGATATGGTCTTACACGTAACCTCA
69889226 GTAATCCTAA
Statistics
Matches: 67, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
42 33 0.49
43 34 0.51
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.32
Consensus pattern (42 bp):
ATGCCATATCCTAGATATGGTCTTACACGTAACCTCATATCG
Found at i:69889408 original size:23 final size:25
Alignment explanation
Indices: 69889374--69889423 Score: 61
Period size: 23 Copynumber: 2.1 Consensus size: 25
69889364 TTATCACTAT
69889374 TATATCAATTAA-GCAT-TTAAACA
1 TATATCAATTAATGCATATTAAACA
*
69889397 TATAT-AATTTAATGCTTATTAAACA
1 TATATCAA-TTAATGCATATTAAACA
69889422 TA
1 TA
69889424 CGAACTTACC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
22 2 0.09
23 9 0.39
24 3 0.13
25 9 0.39
ACGTcount: A:0.46, C:0.10, G:0.04, T:0.40
Consensus pattern (25 bp):
TATATCAATTAATGCATATTAAACA
Found at i:69894134 original size:19 final size:19
Alignment explanation
Indices: 69894121--69894195 Score: 66
Period size: 19 Copynumber: 4.0 Consensus size: 19
69894111 TAAAACTAAC
*
69894121 ATTAATATTAAAAATAAAA
1 ATTAAAATTAAAAATAAAA
*
69894140 ATTAAAATT-AAAATTAAA
1 ATTAAAATTAAAAATAAAA
* *
69894158 ATTAAAGA-CAAAGATAAAA
1 ATTAAA-ATTAAAAATAAAA
*
69894177 ATGAGAAA-TAAAAATAAAA
1 ATTA-AAATTAAAAATAAAA
69894196 CTAGGAAAAT
Statistics
Matches: 45, Mismatches: 8, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
18 14 0.31
19 29 0.64
20 2 0.04
ACGTcount: A:0.69, C:0.01, G:0.05, T:0.24
Consensus pattern (19 bp):
ATTAAAATTAAAAATAAAA
Found at i:69894138 original size:6 final size:6
Alignment explanation
Indices: 69894129--69894195 Score: 53
Period size: 6 Copynumber: 10.8 Consensus size: 6
69894119 ACATTAATAT
* * * * * *
69894129 TAAAAA TAAAAA TTAAAAT TAAAAT TAAAAT TAAAGA CAAAGA TAAAAA
1 TAAAAA TAAAAA -TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA
*
69894178 TGAGAAA TAAAAA TAAAA
1 T-AAAAA TAAAAA TAAAA
69894196 CTAGGAAAAT
Statistics
Matches: 51, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
6 41 0.80
7 10 0.20
ACGTcount: A:0.72, C:0.01, G:0.06, T:0.21
Consensus pattern (6 bp):
TAAAAA
Found at i:69894149 original size:25 final size:25
Alignment explanation
Indices: 69894108--69894195 Score: 74
Period size: 25 Copynumber: 3.6 Consensus size: 25
69894098 TTATTAAAAT
* *
69894108 AAAT-AAAACTAACATTAATATTAA
1 AAATAAAAACTAAAATTAAAATTAA
*
69894132 AAATAAAAATTAAAATTAAAATTAA
1 AAATAAAAACTAAAATTAAAATTAA
* * * * *
69894157 AATTAAAGAC-AAAGATAAAAATGAG
1 AAATAAAAACTAAA-ATTAAAATTAA
69894182 AAATAAAAA-TAAAA
1 AAATAAAAACTAAAA
69894196 CTAGGAAAAT
Statistics
Matches: 50, Mismatches: 11, Indels: 6
0.75 0.16 0.09
Matches are distributed among these distances:
24 8 0.16
25 42 0.84
ACGTcount: A:0.69, C:0.03, G:0.05, T:0.23
Consensus pattern (25 bp):
AAATAAAAACTAAAATTAAAATTAA
Found at i:69894152 original size:12 final size:12
Alignment explanation
Indices: 69894100--69894163 Score: 62
Period size: 12 Copynumber: 5.5 Consensus size: 12
69894090 GACCCCCTTT
69894100 ATTAAAA-T-AA
1 ATTAAAATTAAA
* *
69894110 A-TAAAACTAAC
1 ATTAAAATTAAA
*
69894121 ATTAATATTAAAA
1 ATTAAAATT-AAA
*
69894134 ATAAAAATTAAA
1 ATTAAAATTAAA
69894146 ATTAAAATTAAA
1 ATTAAAATTAAA
69894158 ATTAAA
1 ATTAAA
69894164 GACAAAGATA
Statistics
Matches: 43, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
9 5 0.12
10 2 0.05
11 2 0.05
12 25 0.58
13 9 0.21
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (12 bp):
ATTAAAATTAAA
Found at i:69897822 original size:28 final size:28
Alignment explanation
Indices: 69897768--69897823 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 28
69897758 AATTTAAGTA
*
69897768 AAGTAATGTAAAGGTAATAAAGTAATTT
1 AAGTAATGTAAAGGTAATAAAGAAATTT
69897796 AAGTAATGTAAAGGTAATACAA-AAATTT
1 AAGTAATGTAAAGGTAATA-AAGAAATTT
69897824 GAACCTGTTC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
28 24 0.92
29 2 0.08
ACGTcount: A:0.52, C:0.02, G:0.16, T:0.30
Consensus pattern (28 bp):
AAGTAATGTAAAGGTAATAAAGAAATTT
Found at i:69905105 original size:15 final size:15
Alignment explanation
Indices: 69905085--69905119 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
69905075 GAAATTAACT
*
69905085 TCATTTATTTATTCA
1 TCATTTATTTAGTCA
*
69905100 TCATTTTTTTAGTCA
1 TCATTTATTTAGTCA
69905115 TCATT
1 TCATT
69905120 CAAATAAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.23, C:0.14, G:0.03, T:0.60
Consensus pattern (15 bp):
TCATTTATTTAGTCA
Found at i:69906609 original size:19 final size:19
Alignment explanation
Indices: 69906578--69906618 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
69906568 TCCACTTTCC
69906578 CTTTCACATTTCTCTTCTT
1 CTTTCACATTTCTCTTCTT
69906597 CTTTC-CATATTCTCTTCTT
1 CTTTCACAT-TTCTCTTCTT
69906616 CTT
1 CTT
69906619 ATAGATCTAC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 3 0.14
19 18 0.86
ACGTcount: A:0.10, C:0.32, G:0.00, T:0.59
Consensus pattern (19 bp):
CTTTCACATTTCTCTTCTT
Found at i:69912540 original size:48 final size:48
Alignment explanation
Indices: 69912469--69912662 Score: 352
Period size: 48 Copynumber: 4.0 Consensus size: 48
69912459 CAAGATAAAT
* *
69912469 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
69912517 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
69912565 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
69912613 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
69912661 AT
1 AT
69912663 GTGTGTATAT
Statistics
Matches: 141, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 141 1.00
ACGTcount: A:0.34, C:0.06, G:0.29, T:0.31
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
Found at i:69912853 original size:37 final size:37
Alignment explanation
Indices: 69912803--69912905 Score: 188
Period size: 37 Copynumber: 2.8 Consensus size: 37
69912793 GGAAATATAT
69912803 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
69912840 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
69912877 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
69912906 GGACTATTCG
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:69913892 original size:26 final size:26
Alignment explanation
Indices: 69913856--69913909 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
69913846 ACCATTTCAT
69913856 GCATACATGGTTACGAACTCACCTTA
1 GCATACATGGTTACGAACTCACCTTA
*
69913882 GCATACATGGTTATGAACTCACCTTA
1 GCATACATGGTTACGAACTCACCTTA
69913908 GC
1 GC
69913910 TTAACTTAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACATGGTTACGAACTCACCTTA
Found at i:69915662 original size:17 final size:17
Alignment explanation
Indices: 69915633--69915666 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
69915623 GACCTCTATT
69915633 TTTGAATCCCATAGCTA
1 TTTGAATCCCATAGCTA
69915650 TTTG-ATCCTCATAGCTA
1 TTTGAATCC-CATAGCTA
69915667 CTAGAATTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.26, C:0.24, G:0.12, T:0.38
Consensus pattern (17 bp):
TTTGAATCCCATAGCTA
Found at i:69917473 original size:85 final size:84
Alignment explanation
Indices: 69917322--69917480 Score: 203
Period size: 85 Copynumber: 1.9 Consensus size: 84
69917312 AACAAGTACA
* * * * * *
69917322 ATGCCGATGTCCCGGACGTGGTCTTACATGTAATTCAATAACGATGCCTCTATCTCAGACAGGGT
1 ATGCCGATGTCCCAGACATGGTCTTACATGTAATTCAAT-ACGAGGCCTCTATCCCAAACACGGT
69917387 CTTACACGAAATCAGATATG
65 CTTACACGAAATCAGATATG
* * *
69917407 ATGCCGATGTCCCAGACATGGTCTTATATGTAAATTTCAAT-CGAGGCCTGTGTCCCAAACACGG
1 ATGCCGATGTCCCAGACATGGTCTTACATGT-AA-TTCAATACGAGGCCTCTATCCCAAACACGG
69917471 TCTTACACGA
64 TCTTACACGA
69917481 TGTCTCAGAC
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
85 55 0.87
86 2 0.03
87 6 0.10
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.27
Consensus pattern (84 bp):
ATGCCGATGTCCCAGACATGGTCTTACATGTAATTCAATACGAGGCCTCTATCCCAAACACGGTC
TTACACGAAATCAGATATG
Found at i:69919292 original size:28 final size:30
Alignment explanation
Indices: 69919248--69919314 Score: 107
Period size: 30 Copynumber: 2.2 Consensus size: 30
69919238 CTACACGGCT
69919248 AGACACACGGGCGTGTGACTAGATCATATA
1 AGACACACGGGCGTGTGACTAGATCATATA
* * *
69919278 AGACACACGGGTGTGTGACTGGATCGTATA
1 AGACACACGGGCGTGTGACTAGATCATATA
69919308 AGACACA
1 AGACACA
69919315 TGGCTAACAC
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.33, C:0.19, G:0.28, T:0.19
Consensus pattern (30 bp):
AGACACACGGGCGTGTGACTAGATCATATA
Found at i:69921054 original size:23 final size:23
Alignment explanation
Indices: 69921024--69921070 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
69921014 TTATTTGTTA
69921024 TGTCTTATTAAAGGAGAGCTTCT
1 TGTCTTATTAAAGGAGAGCTTCT
*
69921047 TGTCTTATTAAAGGAGAGGTTCT
1 TGTCTTATTAAAGGAGAGCTTCT
69921070 T
1 T
69921071 ATGTTGTGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.26, C:0.11, G:0.23, T:0.40
Consensus pattern (23 bp):
TGTCTTATTAAAGGAGAGCTTCT
Found at i:69921706 original size:14 final size:14
Alignment explanation
Indices: 69921687--69921715 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
69921677 TGAGGGTTAG
69921687 TTTGTAAAATGCTC
1 TTTGTAAAATGCTC
69921701 TTTGTAAAATGCTC
1 TTTGTAAAATGCTC
69921715 T
1 T
69921716 AAATATGTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.14, G:0.14, T:0.45
Consensus pattern (14 bp):
TTTGTAAAATGCTC
Found at i:69922195 original size:43 final size:43
Alignment explanation
Indices: 69922057--69922231 Score: 167
Period size: 43 Copynumber: 4.1 Consensus size: 43
69922047 CATACGATTT
* * * *
69922057 TTGATATGTGATTTTGTGTAAGACCACGTCTGGGACATTGGTA
1 TTGATATTTGATTTCGTGTAAGACCACATCTGGGACATTGGCA
* * ** *
69922100 TCGAT-TTGAGATTTACGTGTAAGACCATGTCTGGGACATCGGCA
1 TTGATATT-TGATTT-CGTGTAAGACCACATCTGGGACATTGGCA
* * * *
69922144 TCG-TATTTGATTTTGTGTAAGA-CATTATCTGGGACAGTGGCA
1 TTGATATTTGATTTCGTGTAAGACCA-CATCTGGGACATTGGCA
* *
69922186 TTGATATTTGATTACATGTAAGACCACATCTGGGACATTGGCA
1 TTGATATTTGATTTCGTGTAAGACCACATCTGGGACATTGGCA
69922229 TTG
1 TTG
69922232 TACGAGCTTT
Statistics
Matches: 108, Mismatches: 18, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
41 2 0.02
42 25 0.23
43 49 0.45
44 32 0.30
ACGTcount: A:0.25, C:0.14, G:0.26, T:0.35
Consensus pattern (43 bp):
TTGATATTTGATTTCGTGTAAGACCACATCTGGGACATTGGCA
Found at i:69935023 original size:44 final size:44
Alignment explanation
Indices: 69934961--69935124 Score: 142
Period size: 43 Copynumber: 3.8 Consensus size: 44
69934951 TCTGATATGT
* * *
69934961 GATTTCGTGTAAGGCCATGTTTGGGACGTTGGCATCG-ATTTGA
1 GATTTCGTGTAAGACCATGTCTGGGACATTGGCATCGTATTTGA
*
69935004 GATTTACGTGTAAGACCATGTCTGGGACATTGGCATTGTATTT--
1 GATTT-CGTGTAAGACCATGTCTGGGACATTGGCATCGTATTTGA
* ** * * *
69935047 GA-TTCTATGTAAGACCCGGTCTGCGACAGTGGCATCAATATTT--
1 GATTTC-GTGTAAGACCATGTCTGGGACATTGGCATC-GTATTTGA
* * *
69935090 GATTACATGTAAGACCACGTCTGGGACATTGGCAT
1 GATTTCGTGTAAGACCATGTCTGGGACATTGGCAT
69935125 TGTACGAGCT
Statistics
Matches: 100, Mismatches: 16, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
41 1 0.01
42 26 0.26
43 39 0.39
44 30 0.30
45 4 0.04
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (44 bp):
GATTTCGTGTAAGACCATGTCTGGGACATTGGCATCGTATTTGA
Found at i:69939233 original size:20 final size:18
Alignment explanation
Indices: 69939186--69939234 Score: 57
Period size: 20 Copynumber: 2.7 Consensus size: 18
69939176 CAAGATAAAC
69939186 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
69939203 ATTAAGA-TAATCACTTTAAT
1 ATTAA-ATTAAT-A-TTTAAT
69939223 ATTAAATTAATA
1 ATTAAATTAATA
69939235 AAAATGCTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
17 8 0.30
18 1 0.04
19 3 0.11
20 15 0.56
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (18 bp):
ATTAAATTAATATTTAAT
Found at i:69939790 original size:13 final size:13
Alignment explanation
Indices: 69939767--69939801 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
69939757 TTTCCAAATT
69939767 AAATT-TTTAATC
1 AAATTCTTTAATC
69939779 AAATTCTTTAATC
1 AAATTCTTTAATC
69939792 AAATTCTTTA
1 AAATTCTTTA
69939802 GTTGAAAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
12 5 0.23
13 17 0.77
ACGTcount: A:0.40, C:0.11, G:0.00, T:0.49
Consensus pattern (13 bp):
AAATTCTTTAATC
Found at i:69945996 original size:45 final size:45
Alignment explanation
Indices: 69945942--69946061 Score: 179
Period size: 45 Copynumber: 2.6 Consensus size: 45
69945932 GGTTAAGCAT
* *
69945942 CCGAACTCGTTGAGTTGAGTCTGAGTTCACCTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTC-GAGTTCACCTATGGATGCGAACGC
*
69945988 CC-AACTCGTTGAGTTGAGTCGAGTTCACTTATGGATGCGAACGC
1 CCGAACTCGTTGAGTTGAGTCGAGTTCACCTATGGATGCGAACGC
*
69946032 CCGAGCTCGTTGAGTTGAGTCCGAGTTCAC
1 CCGAACTCGTTGAGTTGAGT-CGAGTTCAC
69946062 TTAGGGGCGG
Statistics
Matches: 68, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
44 23 0.34
45 34 0.50
46 11 0.16
ACGTcount: A:0.21, C:0.23, G:0.28, T:0.28
Consensus pattern (45 bp):
CCGAACTCGTTGAGTTGAGTCGAGTTCACCTATGGATGCGAACGC
Found at i:69953631 original size:46 final size:45
Alignment explanation
Indices: 69953468--69953637 Score: 204
Period size: 46 Copynumber: 3.7 Consensus size: 45
69953458 GGTTGAGCAT
* *
69953468 CCGAACTCGTTGAGTTGAGTCCGAGTTCAC-TATGGATGCAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACGC
* * *
69953512 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAC---GC
69953557 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-AACGC
*
69953605 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
69953638 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 6 0.06
44 29 0.27
45 1 0.01
46 32 0.30
47 28 0.26
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (45 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACGC
Found at i:69962780 original size:27 final size:26
Alignment explanation
Indices: 69962732--69962783 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
69962722 GCGAGGCTGC
*
69962732 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
69962758 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
69962784 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:69963410 original size:26 final size:27
Alignment explanation
Indices: 69963381--69963434 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
69963371 TCACACAAGT
*
69963381 TAGTCATTT-ACGCACGAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
* *
69963407 TAGTCATTTAACACCCTAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
69963434 T
1 T
69963435 GGTAATTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 9 0.38
27 15 0.62
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.22
Consensus pattern (27 bp):
TAGTCATTTAACACACGAGGGGCAAAA
Found at i:69963525 original size:28 final size:27
Alignment explanation
Indices: 69963436--69963581 Score: 166
Period size: 27 Copynumber: 5.4 Consensus size: 27
69963426 GGGCAAAATG
* * * * *
69963436 GTAATTTTACCCCACAAGGGTATCTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
69963463 GTAATTCTACCCTACAGGAGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
69963490 GTAATTCTACCTTATAGGGGTATTTTCA
1 GTAATTCTACCCTACAGGGGTA-TTTCA
* *
69963518 ATAATTCTACCCTATAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
69963545 GTAATTCTACCTTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
69963572 GTAATTCTAC
1 GTAATTCTAC
69963582 AACTTATCCA
Statistics
Matches: 103, Mismatches: 15, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
27 79 0.77
28 24 0.23
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:69963531 original size:55 final size:55
Alignment explanation
Indices: 69963464--69963569 Score: 176
Period size: 55 Copynumber: 1.9 Consensus size: 55
69963454 GGTATCTCGG
* *
69963464 TAATTCTACCCTACAGGAGTATTTCGGTAATTCTACCTTATAGGGGTATTTTCAA
1 TAATTCTACCCTACAGGAGTATTTCAGTAATTCTACCTTACAGGGGTATTTTCAA
* *
69963519 TAATTCTACCCTATAGGGGTATTTCAGTAATTCTACCTTACAGGGGTATTT
1 TAATTCTACCCTACAGGAGTATTTCAGTAATTCTACCTTACAGGGGTATTT
69963570 CGGTAATTCT
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
55 47 1.00
ACGTcount: A:0.26, C:0.18, G:0.17, T:0.39
Consensus pattern (55 bp):
TAATTCTACCCTACAGGAGTATTTCAGTAATTCTACCTTACAGGGGTATTTTCAA
Found at i:69970847 original size:47 final size:49
Alignment explanation
Indices: 69970730--69970904 Score: 174
Period size: 45 Copynumber: 3.8 Consensus size: 49
69970720 AACCCGCCCC
* * *
69970730 TAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C-GTTCGCAT-CA
1 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTT-ACATCCA
**
69970775 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-AGTTACATCCA
* * *
69970823 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTTGCATCCA
1 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTTACATCCA
*
69970868 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
69970905 TCAACCATCC
Statistics
Matches: 110, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
43 6 0.05
44 2 0.02
45 33 0.30
46 29 0.26
47 30 0.27
48 3 0.03
49 4 0.04
50 3 0.03
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.22
Consensus pattern (49 bp):
TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTTACATCCA
Found at i:69970849 original size:92 final size:93
Alignment explanation
Indices: 69970735--69970904 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
69970725 GCCCCTAAGT
* *
69970735 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT-CATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
69970799 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
69970827 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
69970892 CGAGTTCGGATGC
66 CGAGTTCGGATGC
69970905 TCAACCATCC
Statistics
Matches: 72, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
92 34 0.47
93 38 0.53
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:69971357 original size:30 final size:30
Alignment explanation
Indices: 69971323--69971382 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
69971313 ATTTAATACG
69971323 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
69971353 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
69971383 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:69972435 original size:20 final size:20
Alignment explanation
Indices: 69972373--69972437 Score: 60
Period size: 23 Copynumber: 3.1 Consensus size: 20
69972363 TCTCTAATAT
* *
69972373 CCACCA-ACACCCACTGACCA
1 CCACCACACACTCACTG-TCA
*
69972393 CCACCATCATCATTCACTAGTCA
1 CCACCA-CA-CACTCACT-GTCA
69972416 CCACCACACACTCACTGTCA
1 CCACCACACACTCACTGTCA
69972436 CC
1 CC
69972438 TCCCTCAACA
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
20 12 0.32
21 7 0.19
22 3 0.08
23 14 0.38
24 1 0.03
ACGTcount: A:0.31, C:0.49, G:0.05, T:0.15
Consensus pattern (20 bp):
CCACCACACACTCACTGTCA
Found at i:69973635 original size:14 final size:13
Alignment explanation
Indices: 69973616--69973670 Score: 56
Period size: 14 Copynumber: 3.9 Consensus size: 13
69973606 TTAAATAAAT
69973616 AATGAAATATATAA
1 AATGAAATA-ATAA
69973630 AATGAAAGTAATAA
1 AATGAAA-TAATAA
* *
69973644 AGTGTGAATAATAA
1 AATG-AAATAATAA
69973658 AATGAAGATAATA
1 AATGAA-ATAATA
69973671 TTATATAATA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
13 1 0.03
14 29 0.85
15 4 0.12
ACGTcount: A:0.60, C:0.00, G:0.15, T:0.25
Consensus pattern (13 bp):
AATGAAATAATAA
Found at i:69978315 original size:42 final size:43
Alignment explanation
Indices: 69978231--69978316 Score: 165
Period size: 43 Copynumber: 2.0 Consensus size: 43
69978221 TGCAATTTCA
69978231 TGCTTAAAACTTCTAGAATGCAAGTTTTGCACTTTATTCAATT
1 TGCTTAAAACTTCTAGAATGCAAGTTTTGCACTTTATTCAATT
69978274 TGCTTAAAACTTCTAGAATGCAAG-TTTGCACTTTATTCAATT
1 TGCTTAAAACTTCTAGAATGCAAGTTTTGCACTTTATTCAATT
69978316 T
1 T
69978317 TGTCTCTAAA
Statistics
Matches: 43, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
42 19 0.44
43 24 0.56
ACGTcount: A:0.30, C:0.16, G:0.12, T:0.42
Consensus pattern (43 bp):
TGCTTAAAACTTCTAGAATGCAAGTTTTGCACTTTATTCAATT
Found at i:69982336 original size:39 final size:40
Alignment explanation
Indices: 69982235--69982454 Score: 256
Period size: 39 Copynumber: 5.6 Consensus size: 40
69982225 AATGATGTCT
* *
69982235 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-ATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT-TCC
* *
69982275 GGACTAAGAT-CCAAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAATTCC
69982315 GGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
* * *
69982354 GGGCTAAG-CCCAAAGGCATTGGTGCGAGTTACTAAAT-C
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
* * *
69982392 GGGTTAAGTCCCGAAGGAATTTGTGCGAGTTACT-ATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCC
*
69982432 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
69982455 AACGAGTAGC
Statistics
Matches: 155, Mismatches: 18, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
38 9 0.06
39 85 0.55
40 51 0.33
41 10 0.06
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
Found at i:69990453 original size:40 final size:40
Alignment explanation
Indices: 69990369--69990553 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
69990359 TCGAATGATG
* *
69990369 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
69990408 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
69990449 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
69990488 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
69990527 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
69990554 AACGAGTAGC
Statistics
Matches: 127, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
39 36 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:69990505 original size:79 final size:81
Alignment explanation
Indices: 69990369--69990551 Score: 241
Period size: 79 Copynumber: 2.3 Consensus size: 81
69990359 TCGAATGATG
* *
69990369 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
69990433 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * **
69990448 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCA
69990510 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
69990528 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
69990552 TGAACGAGTA
Statistics
Matches: 91, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
78 1 0.01
79 60 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:69990575 original size:79 final size:78
Alignment explanation
Indices: 69990370--69990586 Score: 237
Period size: 79 Copynumber: 2.7 Consensus size: 78
69990360 CGAATGATGT
* *
69990370 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATATCCGGACTAAGATCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTAG-CTATATCCGG-TTAAG-TCCGAAGGCATT
*
69990433 TGTGCGAGTTACTAATT
62 TGTGCGAGTTACTAATA
* *
69990450 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTA-CTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TAGCTATATCC-GGTTAAGT-CCGAAGGCATTT
69990513 GTGCGAGTTACT-ATAA
63 GTGCGAGTTACTAAT-A
* ** *
69990529 CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTT-AAGTCCGAAGG
69990587 TACGTGATTC
Statistics
Matches: 117, Mismatches: 11, Indels: 19
0.80 0.07 0.13
Matches are distributed among these distances:
78 3 0.03
79 68 0.58
80 46 0.39
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAAGTCCGAAGGCATTTGTG
CGAGTTACTAATA
Found at i:70012011 original size:6 final size:6
Alignment explanation
Indices: 70012000--70012025 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
70011990 TCCTCTTATC
70012000 TTTTTA TTTTTA TTTTTA TTTTTA TT
1 TTTTTA TTTTTA TTTTTA TTTTTA TT
70012026 CTCATTTCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTTA
Found at i:70016146 original size:54 final size:54
Alignment explanation
Indices: 70016082--70016210 Score: 165
Period size: 54 Copynumber: 2.4 Consensus size: 54
70016072 TGTCCCGAAA
70016082 GACTACCCCGTGTTTA-TCGTCCT-AGTAGACTA-CTCTGTGTTTACTATCTCAACG
1 GACTACCCCGTGTTTACT-GTCCTGA-TAGACTACCTC-GTGTTTACTATCTCAACG
* ** *
70016136 GACTATCCCGTGTTTACTGTCCTGATAGACTACCTCGTGTTTACTATCTTGATG
1 GACTACCCCGTGTTTACTGTCCTGATAGACTACCTCGTGTTTACTATCTCAACG
*
70016190 GACTACCTCGTGTTTACTGTC
1 GACTACCCCGTGTTTACTGTC
70016211 TTTACAAACT
Statistics
Matches: 66, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
54 61 0.92
55 5 0.08
ACGTcount: A:0.19, C:0.26, G:0.18, T:0.37
Consensus pattern (54 bp):
GACTACCCCGTGTTTACTGTCCTGATAGACTACCTCGTGTTTACTATCTCAACG
Found at i:70016221 original size:27 final size:27
Alignment explanation
Indices: 70016059--70016212 Score: 118
Period size: 27 Copynumber: 5.7 Consensus size: 27
70016049 CCTTAATGTA
* ** *
70016059 ACCTTGTGTTTACTGTCCCGAAAGACT
1 ACCTCGTGTTTACTGTCTTGATAGACT
* *
70016086 ACCCCGTGTTTA-TCGTCCT-AGTAGACT
1 ACCTCGTGTTTACT-GTCTTGA-TAGACT
* ** **
70016113 A-CTCTGTGTTTACTATCTCAACGGACT
1 ACCTC-GTGTTTACTGTCTTGATAGACT
*
70016140 ATCC-CGTGTTTACTGTCCTGATAGACT
1 A-CCTCGTGTTTACTGTCTTGATAGACT
* *
70016167 ACCTCGTGTTTACTATCTTGATGGACT
1 ACCTCGTGTTTACTGTCTTGATAGACT
70016194 ACCTCGTGTTTACTGTCTT
1 ACCTCGTGTTTACTGTCTT
70016213 TACAAACTAT
Statistics
Matches: 99, Mismatches: 20, Indels: 16
0.73 0.15 0.12
Matches are distributed among these distances:
26 6 0.06
27 89 0.90
28 3 0.03
29 1 0.01
ACGTcount: A:0.19, C:0.26, G:0.18, T:0.38
Consensus pattern (27 bp):
ACCTCGTGTTTACTGTCTTGATAGACT
Found at i:70018537 original size:40 final size:40
Alignment explanation
Indices: 70018449--70018578 Score: 156
Period size: 40 Copynumber: 3.2 Consensus size: 40
70018439 ATGCTGGAAA
* * *
70018449 TTATATCCGGGTTAAGACCCAAAGGCAATT-GTGCTAG-CGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTC-G
* *
70018489 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
* * *
70018529 TTTTATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
70018569 TTATATCCGG
1 TTATATCCGG
70018579 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.95
41 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
Found at i:70020332 original size:22 final size:22
Alignment explanation
Indices: 70020305--70020348 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
70020295 CATGACAAGC
70020305 ATTTATTGGCTAAGCTAAAGAT
1 ATTTATTGGCTAAGCTAAAGAT
*
70020327 ATTTATTGGGTAAGCTAAAGAT
1 ATTTATTGGCTAAGCTAAAGAT
70020349 GTCCAACTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.36, C:0.07, G:0.20, T:0.36
Consensus pattern (22 bp):
ATTTATTGGCTAAGCTAAAGAT
Found at i:70022555 original size:20 final size:20
Alignment explanation
Indices: 70022530--70022575 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
70022520 TATTTTTATG
*
70022530 ATGATTAAAAGC-ATATTTAC
1 ATGATT-AAAGCGATAATTAC
*
70022550 ATGATTTAAGCGATAATTAC
1 ATGATTAAAGCGATAATTAC
70022570 ATGATT
1 ATGATT
70022576 TTTTATCAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 4 0.17
20 19 0.83
ACGTcount: A:0.41, C:0.09, G:0.13, T:0.37
Consensus pattern (20 bp):
ATGATTAAAGCGATAATTAC
Found at i:70026942 original size:47 final size:47
Alignment explanation
Indices: 70026871--70026964 Score: 179
Period size: 47 Copynumber: 2.0 Consensus size: 47
70026861 TGTATGATAA
*
70026871 AATAATACCCTAAGAGACTGGCCTTCATCTTTTTCATTTTTTCTTTC
1 AATAATACCCTAAGAGACTAGCCTTCATCTTTTTCATTTTTTCTTTC
70026918 AATAATACCCTAAGAGACTAGCCTTCATCTTTTTCATTTTTTCTTTC
1 AATAATACCCTAAGAGACTAGCCTTCATCTTTTTCATTTTTTCTTTC
70026965 TCCTCCACTG
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.24, C:0.23, G:0.07, T:0.45
Consensus pattern (47 bp):
AATAATACCCTAAGAGACTAGCCTTCATCTTTTTCATTTTTTCTTTC
Found at i:70036340 original size:79 final size:81
Alignment explanation
Indices: 70036231--70036413 Score: 241
Period size: 79 Copynumber: 2.3 Consensus size: 81
70036221 TACTCGTTCA
* *
70036231 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
70036294 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
70036311 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
*
70036374 TATAGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
70036390 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
70036414 CATCATTCGA
Statistics
Matches: 91, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
78 3 0.03
79 60 0.66
80 28 0.31
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:70036413 original size:40 final size:40
Alignment explanation
Indices: 70036210--70036413 Score: 247
Period size: 40 Copynumber: 5.1 Consensus size: 40
70036200 CGGAATTTAA
** *
70036210 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
70036250 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
70036290 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
70036329 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
70036369 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
70036409 CCGGA
1 CCGGA
70036414 CATCATTCGA
Statistics
Matches: 142, Mismatches: 15, Indels: 14
0.83 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 95 0.67
41 12 0.08
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:70044576 original size:29 final size:29
Alignment explanation
Indices: 70044543--70044616 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
70044533 GTGACGAGAT
70044543 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
70044572 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
70044601 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
70044617 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:70044632 original size:29 final size:29
Alignment explanation
Indices: 70044600--70044675 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
70044590 CTGGAAATAT
* *
70044600 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
** * * *
70044629 ATGGCACTGTGTGTGCGGGCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
70044658 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
70044676 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.22, C:0.20, G:0.36, T:0.22
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Found at i:70044643 original size:58 final size:58
Alignment explanation
Indices: 70044543--70044675 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
70044533 GTGACGAGAT
* * * * * *
70044543 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT-GAAATCACA
* * ** * * *
70044601 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
70044659 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
70044676 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (58 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
Found at i:70052587 original size:14 final size:14
Alignment explanation
Indices: 70052568--70052604 Score: 74
Period size: 14 Copynumber: 2.6 Consensus size: 14
70052558 CCACACGAGG
70052568 GTGTAGGCCCACAC
1 GTGTAGGCCCACAC
70052582 GTGTAGGCCCACAC
1 GTGTAGGCCCACAC
70052596 GTGTAGGCC
1 GTGTAGGCC
70052605 ACATAGGTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.19, C:0.32, G:0.32, T:0.16
Consensus pattern (14 bp):
GTGTAGGCCCACAC
Found at i:70053447 original size:22 final size:21
Alignment explanation
Indices: 70053416--70053457 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
70053406 ACTACAAGGC
*
70053416 ATGATAAAACATGGTTTTTCTT
1 ATGATAAAAC-GGGTTTTTCTT
*
70053438 ATGATCAAACGGGTTTTTCT
1 ATGATAAAACGGGTTTTTCT
70053458 AAAATAAGTG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.29, C:0.12, G:0.17, T:0.43
Consensus pattern (21 bp):
ATGATAAAACGGGTTTTTCTT
Found at i:70054163 original size:8 final size:8
Alignment explanation
Indices: 70054150--70054201 Score: 63
Period size: 8 Copynumber: 6.6 Consensus size: 8
70054140 GCATCTCCTT
70054150 TTTTTCTC
1 TTTTTCTC
70054158 TTTTTCTC
1 TTTTTCTC
*
70054166 TTCTTCT-
1 TTTTTCTC
*
70054173 TTTTTTTC
1 TTTTTCTC
70054181 TTTTAT-TC
1 TTTT-TCTC
70054189 TTTTTCTC
1 TTTTTCTC
70054197 TTTTT
1 TTTTT
70054202 AAACCCTAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
7 6 0.16
8 31 0.82
9 1 0.03
ACGTcount: A:0.02, C:0.19, G:0.00, T:0.79
Consensus pattern (8 bp):
TTTTTCTC
Found at i:70054180 original size:17 final size:17
Alignment explanation
Indices: 70054158--70054193 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
70054148 TTTTTTTCTC
*
70054158 TTTTTCTCTTCTTCTTT
1 TTTTTCTCTTATTCTTT
*
70054175 TTTTTCTTTTATTCTTT
1 TTTTTCTCTTATTCTTT
70054192 TT
1 TT
70054194 CTCTTTTTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.03, C:0.17, G:0.00, T:0.81
Consensus pattern (17 bp):
TTTTTCTCTTATTCTTT
Found at i:70054181 original size:25 final size:23
Alignment explanation
Indices: 70054147--70054201 Score: 67
Period size: 23 Copynumber: 2.3 Consensus size: 23
70054137 GAGGCATCTC
*
70054147 CTTTTTTTCTCTTTT-TCTCTTCTT
1 CTTTTTTT-TCTTTTAT-TCTTTTT
70054171 CTTTTTTTTCTTTTATTCTTTTT
1 CTTTTTTTTCTTTTATTCTTTTT
*
70054194 CTCTTTTT
1 CTTTTTTT
70054202 AAACCCTAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
23 19 0.68
24 9 0.32
ACGTcount: A:0.02, C:0.20, G:0.00, T:0.78
Consensus pattern (23 bp):
CTTTTTTTTCTTTTATTCTTTTT
Found at i:70054201 original size:17 final size:17
Alignment explanation
Indices: 70054156--70054202 Score: 55
Period size: 15 Copynumber: 2.9 Consensus size: 17
70054146 CCTTTTTTTC
* *
70054156 TCTTTTTCTCTTCTTCT
1 TCTTTTTCTCTTTTTAT
70054173 T-TTTTT-TC-TTTTAT
1 TCTTTTTCTCTTTTTAT
70054187 TCTTTTTCTCTTTTTA
1 TCTTTTTCTCTTTTTA
70054203 AACCCTAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
14 5 0.20
15 7 0.28
16 7 0.28
17 6 0.24
ACGTcount: A:0.04, C:0.19, G:0.00, T:0.77
Consensus pattern (17 bp):
TCTTTTTCTCTTTTTAT
Found at i:70054523 original size:6 final size:6
Alignment explanation
Indices: 70054512--70054547 Score: 63
Period size: 6 Copynumber: 6.0 Consensus size: 6
70054502 AATTAGGAAG
*
70054512 GATGAA GATGAA GAAGAA GATGAA GATGAA GATGAA
1 GATGAA GATGAA GATGAA GATGAA GATGAA GATGAA
70054548 TGGGGAAAGA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.53, C:0.00, G:0.33, T:0.14
Consensus pattern (6 bp):
GATGAA
Found at i:70063312 original size:16 final size:16
Alignment explanation
Indices: 70063291--70063322 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
70063281 ACACATTGGC
70063291 GGCATCAATATAAAGT
1 GGCATCAATATAAAGT
70063307 GGCATCAATATAAAGT
1 GGCATCAATATAAAGT
70063323 TTTAAATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.12, G:0.19, T:0.25
Consensus pattern (16 bp):
GGCATCAATATAAAGT
Found at i:70065327 original size:199 final size:199
Alignment explanation
Indices: 70064987--70065387 Score: 739
Period size: 199 Copynumber: 2.0 Consensus size: 199
70064977 TTTTTAAGAT
*
70064987 ACAGGGGACACATACCGCCAAACCACACATCCGTGAGCATGGCCGTGTGCCACAGTTAAGACACA
1 ACAGGGGACACATACCGCCAAACCACACACCCGTGAGCATGGCCGTGTGCCACAGTTAAGACACA
* *
70065052 CGCCCGTGTGTATATCCGTATGGACAAAATAAGACCATTTTCCTAGCCTTATTTCTTACCCTTTT
66 CGCCCGTGTGTATACCCGTATGGACAAAATAAGACCATTTTCCAAGCCTTATTTCTTACCCTTTT
*
70065117 TACCTTGCACCTACATCAACATTTAATCATTTTCAACAACCAATTCAAGACAACTTATCCAAGCC
131 TACCTTGCACCTACATCAACATTTAATCATTTTCAACAACCAATTCAAGACAACTTATCAAAGCC
70065182 AAAC
196 AAAC
*
70065186 ACAGGGGACACATACTGCCAAACCACACACCCGTGAGCATGGCCGTGTGCCACAGTTAAGACACA
1 ACAGGGGACACATACCGCCAAACCACACACCCGTGAGCATGGCCGTGTGCCACAGTTAAGACACA
*
70065251 CGCCCGTGTGTCTACCCGTATGGACAAAATAAGACCATTTTCCAAGCCTTATTTCTTACCCTTTT
66 CGCCCGTGTGTATACCCGTATGGACAAAATAAGACCATTTTCCAAGCCTTATTTCTTACCCTTTT
*
70065316 TACCTTGCACCTACATCAACATTTAATCATTTTGAACAACCAATTCAAGACAACTTATCAAAGCC
131 TACCTTGCACCTACATCAACATTTAATCATTTTCAACAACCAATTCAAGACAACTTATCAAAGCC
70065381 AAAC
196 AAAC
70065385 ACA
1 ACA
70065388 AGAGTTATAT
Statistics
Matches: 195, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
199 195 1.00
ACGTcount: A:0.32, C:0.30, G:0.14, T:0.24
Consensus pattern (199 bp):
ACAGGGGACACATACCGCCAAACCACACACCCGTGAGCATGGCCGTGTGCCACAGTTAAGACACA
CGCCCGTGTGTATACCCGTATGGACAAAATAAGACCATTTTCCAAGCCTTATTTCTTACCCTTTT
TACCTTGCACCTACATCAACATTTAATCATTTTCAACAACCAATTCAAGACAACTTATCAAAGCC
AAAC
Found at i:70073089 original size:64 final size:63
Alignment explanation
Indices: 70073009--70073193 Score: 178
Period size: 67 Copynumber: 2.9 Consensus size: 63
70072999 AGACATTATG
* * *
70073009 ATGTAGCTAGGTCGCATAGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCAT-GGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * *
70073073 ATGTAGCTAGGTCGCATGTGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATG-GTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
70073138 AA
62 AA
* * * *
70073140 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTAAAAGAGAGCT
1 ATGTAGCTAGGTCGCAT-GGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGCT
70073194 GAACTATATG
Statistics
Matches: 99, Mismatches: 15, Indels: 15
0.77 0.12 0.12
Matches are distributed among these distances:
62 1 0.01
63 20 0.20
64 24 0.24
66 20 0.20
67 34 0.34
ACGTcount: A:0.30, C:0.16, G:0.30, T:0.24
Consensus pattern (63 bp):
ATGTAGCTAGGTCGCATGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:70076641 original size:29 final size:29
Alignment explanation
Indices: 70076551--70076710 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
70076541 ACTCGATTTC
* * **
70076551 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
70076580 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
70076608 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
70076638 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
70076667 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
70076696 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
70076711 ATCTCGTCAC
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:70078028 original size:26 final size:24
Alignment explanation
Indices: 70077992--70078040 Score: 62
Period size: 26 Copynumber: 2.0 Consensus size: 24
70077982 ATCCACACTC
70077992 TTTTTTTTTTCATCATTTTCCTTT
1 TTTTTTTTTTCATCATTTTCCTTT
* *
70078016 TTTTTTTCATTTCTTTATTTTCCTT
1 TTTTTTT--TTTCATCATTTTCCTT
70078041 CCATAATGCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 7 0.33
26 14 0.67
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.76
Consensus pattern (24 bp):
TTTTTTTTTTCATCATTTTCCTTT
Found at i:70080737 original size:93 final size:93
Alignment explanation
Indices: 70080611--70080781 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
70080601 GCCCCTAAGT
70080611 GAACTCAGACTCAACTCAACGAGCTCGAGCATTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGAGCATTCGCATCCATAAATGAACTCGGACTCAACTCAA
70080676 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * * **
70080704 GAACTCGGACTCAACTGAACGAGTTCG-GACATTCGCATCCATAGGTGAACTCGGACTCAACTCA
1 GAACTCAGACTCAACTCAACGAGCTCGAG-CATTCGCATCCATAAATGAACTCGGACTCAACTCA
70080768 ACGAGTTCGGATGC
65 ACGAGTTCGGATGC
70080782 TCAACCATCC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 1 0.01
93 71 0.99
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGAGCATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:70080777 original size:46 final size:46
Alignment explanation
Indices: 70080608--70080778 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
70080598 CCCGCCCCTA
* *
70080608 AGTGAACTCAGACTCAACTCAACGAGCTC-GAGCATTCGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCGCATCCAT
* *
70080653 AAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-T
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGA-G-C-A-TTCGCATCCAT
* *
70080701 CA-CGAACTCGGACTCAACTGAACGAGTTCGGA-CATTCGCATCCAT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCGCATCCAT
70080746 AGGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 A-GTGAACTCGGACTCAACTCAACGAGTTCGGA
70080779 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 10, Indels: 20
0.78 0.07 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 3 0.03
45 1 0.01
46 54 0.51
47 30 0.29
48 3 0.03
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.21
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCGCATCCAT
Found at i:70081505 original size:30 final size:30
Alignment explanation
Indices: 70081470--70081533 Score: 119
Period size: 30 Copynumber: 2.1 Consensus size: 30
70081460 GCATAGAATT
*
70081470 TCATCACGAAATTTTCACACAATCATGCAA
1 TCATCACGAAATTTTCACACAATCATACAA
70081500 TCATCACGAAATTTTCACACAATCATACAA
1 TCATCACGAAATTTTCACACAATCATACAA
70081530 TCAT
1 TCAT
70081534 ATCATAATCA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.41, C:0.27, G:0.05, T:0.28
Consensus pattern (30 bp):
TCATCACGAAATTTTCACACAATCATACAA
Found at i:70087436 original size:2 final size:2
Alignment explanation
Indices: 70087429--70087472 Score: 81
Period size: 2 Copynumber: 22.5 Consensus size: 2
70087419 GTATTTAGGA
70087429 AT AT AT AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
70087470 AT A
1 AT A
70087473 AGGTGATATG
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.02
2 40 0.98
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:70088029 original size:27 final size:28
Alignment explanation
Indices: 70087971--70088037 Score: 86
Period size: 27 Copynumber: 2.5 Consensus size: 28
70087961 TAGATAGCTA
70087971 ATAATATT-AAAACATATACATAATAAT
1 ATAATATTAAAAACATATACATAATAAT
*
70087998 ATAATATTAAAAACATATATAT-AT-AT
1 ATAATATTAAAAACATATACATAATAAT
*
70088024 ATTAATATGAAAAA
1 A-TAATATTAAAAA
70088038 TGCATGTGTA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
26 3 0.08
27 21 0.58
28 12 0.33
ACGTcount: A:0.60, C:0.04, G:0.01, T:0.34
Consensus pattern (28 bp):
ATAATATTAAAAACATATACATAATAAT
Found at i:70090337 original size:14 final size:15
Alignment explanation
Indices: 70090312--70090340 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
70090302 TGATTTTTTT
70090312 GAAAAGCAGAAATTG
1 GAAAAGCAGAAATTG
70090327 GAAAA-CAGAAATTG
1 GAAAAGCAGAAATTG
70090341 AAATTACCTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.55, C:0.07, G:0.24, T:0.14
Consensus pattern (15 bp):
GAAAAGCAGAAATTG
Found at i:70090556 original size:89 final size:90
Alignment explanation
Indices: 70090395--70090647 Score: 293
Period size: 89 Copynumber: 2.8 Consensus size: 90
70090385 ATATGAGTTG
* *
70090395 AAAAGAACAGAAATTGAAAACT-CCTCAGCATGTGAGCCG-GGACTCAACTCACCTCTCGCAATA
1 AAAA-AACAGAAACT-AAAAATACCTCAGCA-GTGAGCCGAGG-CTCAACTCACCTCTCGCAATA
70090458 TGAGTTGATTTTTTTGAAAAGCAGAAA-TT
62 TGAGTTGATTTTTTTGAAAA-CAGAAATTT
* * * * ** * *
70090487 AAAAAATAGAAATTGAAATTACCTCAGC-GTGTTCTGAGGCTCAACTCACCTCTCGCAACATGAG
1 AAAAAACAGAAACTAAAAATACCTCAGCAGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAG
70090551 TTGA--TTTTTGAAAACAGAAATTT
66 TTGATTTTTTTGAAAACAGAAATTT
* * *
70090574 GAAAAACAGAAACTAAAAATACCTCAGCATGTGAGCCGAGGCTCAACTCTCCTCTCGTAATATGA
1 AAAAAACAGAAACTAAAAATACCTCAGCA-GTGAGCCGAGGCTCAACTCACCTCTCGCAATATGA
70090639 GTTGATTTT
65 GTTGATTTT
70090648 CTATAAATTG
Statistics
Matches: 136, Mismatches: 18, Indels: 15
0.80 0.11 0.09
Matches are distributed among these distances:
86 6 0.04
87 35 0.26
89 67 0.49
90 6 0.04
91 18 0.13
92 4 0.03
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.26
Consensus pattern (90 bp):
AAAAAACAGAAACTAAAAATACCTCAGCAGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTTTGAAAACAGAAATTT
Found at i:70090576 original size:14 final size:15
Alignment explanation
Indices: 70090557--70090585 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
70090547 TGAGTTGATT
70090557 TTTG-AAAACAGAAA
1 TTTGAAAAACAGAAA
70090571 TTTGAAAAACAGAAA
1 TTTGAAAAACAGAAA
70090586 CTAAAAATAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 4 0.29
15 10 0.71
ACGTcount: A:0.59, C:0.07, G:0.14, T:0.21
Consensus pattern (15 bp):
TTTGAAAAACAGAAA
Found at i:70090730 original size:13 final size:14
Alignment explanation
Indices: 70090712--70090755 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 14
70090702 TTGATTTTTG
70090712 AAAACAGAAATT-A
1 AAAACAGAAATTGA
*
70090725 AAAACAGAATTTGA
1 AAAACAGAAATTGA
* *
70090739 AAGACAGAATTTGA
1 AAAACAGAAATTGA
70090753 AAA
1 AAA
70090756 TACCTCAGCG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
13 11 0.41
14 16 0.59
ACGTcount: A:0.61, C:0.07, G:0.14, T:0.18
Consensus pattern (14 bp):
AAAACAGAAATTGA
Found at i:70090747 original size:14 final size:13
Alignment explanation
Indices: 70090708--70090755 Score: 69
Period size: 13 Copynumber: 3.6 Consensus size: 13
70090698 TGAGTTGATT
70090708 TTTGAAAACAGAA
1 TTTGAAAACAGAA
* *
70090721 ATTAAAAACAGAA
1 TTTGAAAACAGAA
70090734 TTTGAAAGACAGAA
1 TTTGAAA-ACAGAA
70090748 TTTGAAAA
1 TTTGAAAA
70090756 TACCTCAGCG
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
13 17 0.57
14 13 0.43
ACGTcount: A:0.56, C:0.06, G:0.15, T:0.23
Consensus pattern (13 bp):
TTTGAAAACAGAA
Found at i:70090859 original size:75 final size:75
Alignment explanation
Indices: 70090749--70090887 Score: 215
Period size: 75 Copynumber: 1.9 Consensus size: 75
70090739 AAGACAGAAT
* * *
70090749 TTGAAAATACCTCAGCGTGTGACCCGAGGCCCAACTCACCTCTCGCAATATGAGTTGGTTTTTGA
1 TTGAAAATACCTCAGCATATGACCCGAGGCCCAACTCACCTCTCGCAATATGAGTTGATTTTTGA
70090814 CAAACAGTAA
66 CAAACAGTAA
** * *
70090824 TTGAAAATACCTCAGCATATGAGTCGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTG
1 TTGAAAATACCTCAGCATATGACCCGAGGCCCAACTCACCTCTCGCAATATGAGTTGATTTTTG
70090888 GAAAAGTAGA
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
75 57 1.00
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (75 bp):
TTGAAAATACCTCAGCATATGACCCGAGGCCCAACTCACCTCTCGCAATATGAGTTGATTTTTGA
CAAACAGTAA
Found at i:70090991 original size:14 final size:14
Alignment explanation
Indices: 70090974--70091007 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
70090964 ATTGATTTTT
*
70090974 TTGAAAAGCAGAAA
1 TTGAAAAACAGAAA
70090988 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
70091002 TTGAAA
1 TTGAAA
70091008 TTACCTCAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.59, C:0.06, G:0.18, T:0.18
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:70091119 original size:177 final size:172
Alignment explanation
Indices: 70090848--70091177 Score: 493
Period size: 177 Copynumber: 1.9 Consensus size: 172
70090838 GCATATGAGT
** *
70090848 CGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGGAAAAGTAGAAATTAAAGACAGAAA
1 CGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGCAAAAGTA-AAATTAAAGACAGAAA
*
70090913 TTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAATTGATTTTTTTGA
65 TTGAAATTACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAATTGA--TTTTTGA
70090978 AAAGCAGAAATTGAAAAACAGAAATTGAAATTACCTCAACATGCCC
128 AAAGCAGAAATT-AAAAACAGAAATTGAAATTACCTCAACATGCCC
* *
70091024 CGAGGCTCAACTCATCTCTCACAATATGAGTTGATTTTTTTGCAACA-T-AAATTGAAAGAACAG
1 CGAGGCTCAACTCACCTCTCACAATATGAGTTGA--TTTTTGCAAAAGTAAAATT-AAAG-ACAG
*
70091087 AAATTGAAATTACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
62 AAATTGAAATTACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAATTGATTTTTG
* *
70091152 AAAAGTATAAATTAAAAACAGAAATT
127 AAAAGCAGAAATTAAAAACAGAAATT
70091178 AAAAGGCTCA
Statistics
Matches: 141, Mismatches: 9, Indels: 10
0.88 0.06 0.06
Matches are distributed among these distances:
174 13 0.09
175 22 0.16
176 35 0.25
177 62 0.44
178 9 0.06
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.28
Consensus pattern (172 bp):
CGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGCAAAAGTAAAATTAAAGACAGAAAT
TGAAATTACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAATTGATTTTTGAAAA
GCAGAAATTAAAAACAGAAATTGAAATTACCTCAACATGCCC
Found at i:70091162 original size:88 final size:87
Alignment explanation
Indices: 70090849--70091177 Score: 457
Period size: 88 Copynumber: 3.8 Consensus size: 87
70090839 CATATGAGTC
* * * *
70090849 GAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGGAAAAGTAGAAATTAAAGACAGAAAT
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAGCAGAAATTAAAAACAGAAAT
*
70090914 TGAAATTACCTCAGCGTGTCCT
66 TGAAATTACCTCAGCGTGCCCT
*
70090936 GAGGCTCAACTCACCTCTCGCAATATGAATTGATTTTTTTGAAAAGCAGAAATTGAAAAACAGAA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAGCAGAAATT-AAAAACAGAA
* * *
70091001 ATTGAAATTACCTCAACATGCCCC
64 ATTGAAATTACCTCAGCGTGCCCT
* * * *
70091025 GAGGCTCAACTCATCTCTCACAATATGAGTTGATTTTTTTG-CAA-CATAAATTGAAAGAACAGA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAGCAGAAATT-AAA-AACAGA
70091088 AATTGAAATTACCTCAGCGTGCCCT
63 AATTGAAATTACCTCAGCGTGCCCT
* *
70091113 GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAGTATAAATTAAAAACAGAAAT
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAGCAGAAATTAAAAACAGAAAT
70091177 T
66 T
70091178 AAAAGGCTCA
Statistics
Matches: 216, Mismatches: 21, Indels: 11
0.87 0.08 0.04
Matches are distributed among these distances:
86 16 0.07
87 47 0.22
88 86 0.40
89 67 0.31
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.28
Consensus pattern (87 bp):
GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAGCAGAAATTAAAAACAGAAAT
TGAAATTACCTCAGCGTGCCCT
Found at i:70092074 original size:41 final size:40
Alignment explanation
Indices: 70092013--70092092 Score: 115
Period size: 41 Copynumber: 2.0 Consensus size: 40
70092003 CGTGTTAATC
* *
70092013 AAGACGCCCTTTTTGGGTTTTCACCTTGATCTTTTTTTTTT
1 AAGACGCCCTTTTCGGGTTTTCACCTTGAT-TTTCTTTTTT
* *
70092054 AAGATGCCCTTTTCGGGTTTTCATCTTGATTTTCTTTTT
1 AAGACGCCCTTTTCGGGTTTTCACCTTGATTTTCTTTTT
70092093 CTTCAAGCAT
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
40 8 0.23
41 27 0.77
ACGTcount: A:0.12, C:0.19, G:0.15, T:0.54
Consensus pattern (40 bp):
AAGACGCCCTTTTCGGGTTTTCACCTTGATTTTCTTTTTT
Found at i:70104263 original size:27 final size:28
Alignment explanation
Indices: 70104204--70104270 Score: 77
Period size: 27 Copynumber: 2.5 Consensus size: 28
70104194 TAGATAGCTA
70104204 ATAATATT-AAAACATATACATAATAAT
1 ATAATATTAAAAACATATACATAATAAT
* *
70104231 AAAATATTAAAAACATATATAT-AT-AT
1 ATAATATTAAAAACATATACATAATAAT
*
70104257 ATTAATATGAAAAA
1 A-TAATATTAAAAA
70104271 AGCATGTGTA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
26 3 0.09
27 19 0.56
28 12 0.35
ACGTcount: A:0.61, C:0.04, G:0.01, T:0.33
Consensus pattern (28 bp):
ATAATATTAAAAACATATACATAATAAT
Found at i:70106469 original size:47 final size:48
Alignment explanation
Indices: 70106399--70106530 Score: 196
Period size: 47 Copynumber: 2.8 Consensus size: 48
70106389 CACAATCGAT
*
70106399 AAGTACCTATACCATGGCTCGTAGCCAAATCAAGGTAACAT-ATC-CCG
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAAC-TCATCTCCG
* * *
70106446 GAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCCTCTCTG
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCTCCG
*
70106494 AAATACCTATACCATGGCCCGTAGCCAAATCAAGGTA
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTA
70106531 TCATTCGCAC
Statistics
Matches: 77, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
46 1 0.01
47 39 0.51
48 37 0.48
ACGTcount: A:0.33, C:0.29, G:0.17, T:0.21
Consensus pattern (48 bp):
AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCTCCG
Found at i:70111917 original size:68 final size:66
Alignment explanation
Indices: 70111845--70111991 Score: 172
Period size: 67 Copynumber: 2.2 Consensus size: 66
70111835 CATCATGTGT
* * * *
70111845 ACAAGAGAGCTACAAGAAATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC-AG-AA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
70111908 TGTAG
62 TGTAG
* * *
70111913 ACAAGAGAGCTACAGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACAGAATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
70111978 AG
65 AG
70111980 ACAAGAGAGCTA
1 ACAAGAGAGCTA
70111992 TGAGATAAAT
Statistics
Matches: 69, Mismatches: 7, Indels: 7
0.83 0.08 0.08
Matches are distributed among these distances:
64 24 0.35
65 3 0.04
66 3 0.04
67 26 0.38
68 13 0.19
ACGTcount: A:0.33, C:0.16, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACAGAATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:70113147 original size:2 final size:2
Alignment explanation
Indices: 70113140--70113172 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
70113130 TCATGACATG
70113140 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
70113173 GACTAGTCTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:70118702 original size:90 final size:90
Alignment explanation
Indices: 70118542--70118709 Score: 203
Period size: 90 Copynumber: 1.9 Consensus size: 90
70118532 GAATGCCAAA
* * * * * * *
70118542 GCCATGTCCCCGACATGGTCTTACATGGGTCTACATATTGATGCCATATCCTAAATATGGTGTTA
1 GCCATGTCCCAGACATGGTCTTACACGGGGCTACATATCGATGCCATATCCCAAACATGGTCTTA
* *
70118607 TACAAAGTCTCATGTCGGTGCTGAT
66 CACAAAATCTCATGTCGGTGCTGAT
* * * *
70118632 GCCATGTTCCAGACATGGTCTTACACGGGAGCT-CGTATCGATGCCATGTCCCAGACATGGTCTT
1 GCCATGTCCCAGACATGGTCTTACACGGG-GCTACATATCGATGCCATATCCCAAACATGGTCTT
70118696 ACACAAAATCTCAT
65 ACACAAAATCTCAT
70118710 ATCAACGTCA
Statistics
Matches: 64, Mismatches: 13, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
90 62 0.97
91 2 0.03
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (90 bp):
GCCATGTCCCAGACATGGTCTTACACGGGGCTACATATCGATGCCATATCCCAAACATGGTCTTA
CACAAAATCTCATGTCGGTGCTGAT
Found at i:70118784 original size:47 final size:49
Alignment explanation
Indices: 70118722--70118840 Score: 152
Period size: 47 Copynumber: 2.5 Consensus size: 49
70118712 CAACGTCATA
* *
70118722 TCCCAGATATGGTCTTACACTGGCACACATATTA-ACGCTGATGCCATG
1 TCCCAGACATGGTCTTACACTGGCACACATATTAGACGCTGATGCCAAG
* * * * *
70118770 TCCC-GACATGGTCTTACACAGGCTCTCATCTTAGATGCTGATGCCAAG
1 TCCCAGACATGGTCTTACACTGGCACACATATTAGACGCTGATGCCAAG
*
70118818 TCCCAGACATGGTCTCACACTGG
1 TCCCAGACATGGTCTTACACTGG
70118841 ATCTCATTAA
Statistics
Matches: 60, Mismatches: 9, Indels: 3
0.83 0.12 0.04
Matches are distributed among these distances:
47 24 0.40
48 20 0.33
49 16 0.27
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.26
Consensus pattern (49 bp):
TCCCAGACATGGTCTTACACTGGCACACATATTAGACGCTGATGCCAAG
Found at i:70118846 original size:49 final size:48
Alignment explanation
Indices: 70118626--70118847 Score: 157
Period size: 42 Copynumber: 4.9 Consensus size: 48
70118616 TCATGTCGGT
* * * * *
70118626 GCTGATGCCATGTTCCAGACATGGTCTTACACGGGAGCTCGTA-T---
1 GCTGATGCCAAGTCCCAGACATGGTCTTACACTGGATCTCATATTAAC
* *** *
70118670 -C-GATGCCATGTCCCAGACATGGTCTTACACAAAATCTCATATCAAC
1 GCTGATGCCAAGTCCCAGACATGGTCTTACACTGGATCTCATATTAAC
* * *
70118716 G-TCAT----A-TCCCAGATATGGTCTTACACTGGCA-CACATATTAAC
1 GCTGATGCCAAGTCCCAGACATGGTCTTACACTGG-ATCTCATATTAAC
* * * * *
70118758 GCTGATGCCATGTCCC-GACATGGTCTTACACAGGCTCTCATCTTAGAT
1 GCTGATGCCAAGTCCCAGACATGGTCTTACACTGGATCTCATATTA-AC
*
70118806 GCTGATGCCAAGTCCCAGACATGGTCTCACACTGGATCTCAT
1 GCTGATGCCAAGTCCCAGACATGGTCTTACACTGGATCTCAT
70118848 TAATCTTGGT
Statistics
Matches: 135, Mismatches: 27, Indels: 27
0.71 0.14 0.14
Matches are distributed among these distances:
42 63 0.47
43 5 0.04
47 25 0.19
48 20 0.15
49 22 0.16
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.27
Consensus pattern (48 bp):
GCTGATGCCAAGTCCCAGACATGGTCTTACACTGGATCTCATATTAAC
Found at i:70124692 original size:39 final size:38
Alignment explanation
Indices: 70124624--70124912 Score: 314
Period size: 39 Copynumber: 7.7 Consensus size: 38
70124614 ACAAAGCATG
* * *
70124624 CGGGACTTTAAGCCCGGATATAATACCAGCACAAAGCCTG
1 CGGGAC-TT-AGCCCGGATATAACACCAGCACAATGCCTT
*
70124664 CGGGACTTTAGCTCGGATATAACACCAGCACGAATG----
1 CGGGAC-TTAGCCCGGATATAACACCAGCAC-AATGCCTT
70124700 C----CTT----CGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCAC-AATGCCTT
70124731 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCAC-AATGCCTT
*
70124770 CGGGACTTAGCCCAGATATAACACCAGCACAAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCAC-AATGCCTT
* * * *
70124809 CGGGACTTTGCCTGGATATAACTCCAGCATGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCA-CAATGCCTT
* *
70124848 CAGGACTTAGCCCGGATATAACACCAACACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCAC-AATGCCTT
70124887 CGGGACTTAGCCCGGATATAACACCA
1 CGGGACTTAGCCCGGATATAACACCA
70124913 TTATAAAATC
Statistics
Matches: 217, Mismatches: 17, Indels: 31
0.82 0.06 0.12
Matches are distributed among these distances:
27 23 0.11
31 3 0.01
32 1 0.00
35 3 0.01
36 1 0.00
39 174 0.80
40 12 0.06
ACGTcount: A:0.30, C:0.29, G:0.21, T:0.20
Consensus pattern (38 bp):
CGGGACTTAGCCCGGATATAACACCAGCACAATGCCTT
Found at i:70124714 original size:27 final size:27
Alignment explanation
Indices: 70124676--70124733 Score: 116
Period size: 27 Copynumber: 2.1 Consensus size: 27
70124666 GGACTTTAGC
70124676 TCGGATATAACACCAGCACGAATGCCT
1 TCGGATATAACACCAGCACGAATGCCT
70124703 TCGGATATAACACCAGCACGAATGCCT
1 TCGGATATAACACCAGCACGAATGCCT
70124730 TCGG
1 TCGG
70124734 GACTTAGCCC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.31, C:0.29, G:0.21, T:0.19
Consensus pattern (27 bp):
TCGGATATAACACCAGCACGAATGCCT
Found at i:70125017 original size:28 final size:28
Alignment explanation
Indices: 70124985--70125057 Score: 92
Period size: 28 Copynumber: 2.6 Consensus size: 28
70124975 ATTTAATCAT
* * *
70124985 TCAATATTTTGCACACTAAGTGTCGTTC
1 TCAATATTTCGCACACTAAGTGCCATTC
* *
70125013 TCAATATCTCGCACATTAAGTGCCATTC
1 TCAATATTTCGCACACTAAGTGCCATTC
*
70125041 TCAATATTTCGTACACT
1 TCAATATTTCGCACACT
70125058 GAGTATCATA
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.27, C:0.25, G:0.11, T:0.37
Consensus pattern (28 bp):
TCAATATTTCGCACACTAAGTGCCATTC
Found at i:70127642 original size:27 final size:28
Alignment explanation
Indices: 70127585--70127654 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
70127575 AAATTTGTAC
**
70127585 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
* *
70127613 AGCACTATGTGTGCG-AGCTGATTTTAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
70127640 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
70127655 GACTTATTAT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 23 0.62
28 14 0.38
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:70131431 original size:39 final size:39
Alignment explanation
Indices: 70131325--70131507 Score: 199
Period size: 39 Copynumber: 4.6 Consensus size: 39
70131315 TATTCGAATG
* * *
70131325 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAG-ACCGAAGGCATTCGTGCTA-GTGACT
* * *
70131366 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGA-CCGAAGGCATTCGTGCTAG-TGACT
* *
70131406 ATATCCGGGCTAAGACCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCGAAGGCATTCGTGCTAGTGACT
* * *
70131445 ATATCCGGGCTAAGTCCGAAGGCA-TCTGTTCTAGTGACC
1 ATATCCGGGCTAAGACCGAAGGCATTC-GTGCTAGTGACT
70131484 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGA-CCGAAGGC
70131508 CTTGTGCAAG
Statistics
Matches: 120, Mismatches: 17, Indels: 11
0.81 0.11 0.07
Matches are distributed among these distances:
38 2 0.02
39 65 0.54
40 24 0.20
41 29 0.24
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCGAAGGCATTCGTGCTAGTGACT
Found at i:70131514 original size:78 final size:81
Alignment explanation
Indices: 70131325--70131507 Score: 241
Period size: 78 Copynumber: 2.3 Consensus size: 81
70131315 TATTCGAATG
* * *
70131325 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
*
70131390 ATTCGTGCGAGTTGCT
66 ATTCGTGCGAGTTGCC
* *
70131406 ATATCCGGGCTAAGA-CCGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAG-TCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
* *
70131468 A-TCTGTTCTAG-TGACC
66 ATTC-GTGCGAGTTG-CC
70131484 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
70131508 CTTGTGCAAG
Statistics
Matches: 91, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
77 4 0.04
78 31 0.34
79 25 0.27
80 17 0.19
81 14 0.15
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (81 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
ATTCGTGCGAGTTGCC
Found at i:70131526 original size:78 final size:79
Alignment explanation
Indices: 70131325--70131543 Score: 225
Period size: 78 Copynumber: 2.8 Consensus size: 79
70131315 TATTCGAATG
* * * * *
70131325 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-AAGTGACTATATCCGGGCTAAG-TCCGAAGGC
*
70131390 ATTCGTGCGAGTTGCT
64 ATTCGTGCGAGTTGCC
* *
70131406 ATATCCGGGCTAAGA-CCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAGTCCGAAGGCA-
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCGAAGGCAT
* *
70131469 TCTGTTCTAG-TGACC
66 TC-GTGCGAGTTG-CC
* * *
70131484 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCAAGT-AGTTATATCC-GGCTAAATCCTGAAG
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGA-CTATATCCGGGCTAAGTCC-GAAG
70131544 ATTACTTGAG
Statistics
Matches: 118, Mismatches: 15, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
77 14 0.12
78 50 0.42
79 25 0.21
80 15 0.13
81 14 0.12
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCGAAGGCAT
TCGTGCGAGTTGCC
Found at i:70131527 original size:39 final size:39
Alignment explanation
Indices: 70131325--70131534 Score: 187
Period size: 39 Copynumber: 5.3 Consensus size: 39
70131315 TATTCGAATG
* * *
70131325 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTGTGC-AAGTGACT
* * * *
70131366 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATT-GTGCAAG-TGACT
* *
70131406 ATATCCGGGCTAAGA-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCA-TTGTGCAAGTGACT
* * * *
70131445 ATATCCGGGCTAAG-TCCGAAGGCATCTGTTCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCAT-TGTGCAAGTGACT
* *
70131484 ATATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGT-AGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTGTGCAAGTGA-CT
70131523 ATATCC-GGCTAA
1 ATATCCGGGCTAA
70131535 ATCCTGAAGA
Statistics
Matches: 141, Mismatches: 20, Indels: 19
0.78 0.11 0.11
Matches are distributed among these distances:
38 9 0.06
39 77 0.55
40 29 0.21
41 26 0.18
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTGTGCAAGTGACT
Found at i:70139668 original size:79 final size:81
Alignment explanation
Indices: 70139478--70139661 Score: 234
Period size: 79 Copynumber: 2.3 Consensus size: 81
70139468 TATTCGAATG
* * *
70139478 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
*
70139543 ATTCGTGCGAGTTGCT
66 ATTCGTGCGAGTTGCC
* *
70139559 ATATCCGGGCTAAGA-CCGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGAT-CCGAAGG
*
70139621 CA-TCTGTGCTAG-TGACC
65 CATTC-GTGCGAGTTG-CC
*
70139638 ATATCTGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
70139662 CTTGTGCAAG
Statistics
Matches: 91, Mismatches: 8, Indels: 9
0.84 0.07 0.08
Matches are distributed among these distances:
78 5 0.05
79 47 0.52
80 25 0.27
81 14 0.15
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (81 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
ATTCGTGCGAGTTGCC
Found at i:70139681 original size:39 final size:39
Alignment explanation
Indices: 70139478--70139668 Score: 215
Period size: 40 Copynumber: 4.8 Consensus size: 39
70139468 TATTCGAATG
* *
70139478 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTGTGCTA-GTGACT
* * * *
70139519 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATT-GTGCTAG-TGACT
*
70139559 ATATCCGGGCTAAGA-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCA-TTGTGCTAGTGACT
* *
70139598 ATATCCGGGCTAAGTCCCGAAGGCATCTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCAT-TGTGCTAGTGACT
* *
70139638 ATATCTGGGCTAAGACCCGAAGGCCTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTGTGC
70139669 AAGTAGTTAT
Statistics
Matches: 128, Mismatches: 16, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
38 1 0.01
39 37 0.29
40 63 0.49
41 27 0.21
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTGTGCTAGTGACT
Found at i:70143590 original size:47 final size:47
Alignment explanation
Indices: 70143470--70143600 Score: 165
Period size: 47 Copynumber: 2.8 Consensus size: 47
70143460 GTGCGAATGA
* * *
70143470 TACCTTGATTTGGCTATGGACCATGGTATAGGTATTTCAGAGAGGAGT
1 TACCTTGATTTGGCTATGGGCCATGGTATAGGTA-CTCAGAGAGAAGT
* *
70143518 TACCTTGATTTGGCTATAGGCCATGGTATAGGTACTCA-AGGATAAGT
1 TACCTTGATTTGGCTATGGGCCATGGTATAGGTACTCAGA-GAGAAGT
** *
70143565 TACCTTGATTTGGCTGCGGGTCATGGTATAGGTACT
1 TACCTTGATTTGGCTATGGGCCATGGTATAGGTACT
70143601 TATCAATTGT
Statistics
Matches: 73, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
46 1 0.01
47 40 0.55
48 32 0.44
ACGTcount: A:0.24, C:0.15, G:0.28, T:0.34
Consensus pattern (47 bp):
TACCTTGATTTGGCTATGGGCCATGGTATAGGTACTCAGAGAGAAGT
Found at i:70145161 original size:2 final size:2
Alignment explanation
Indices: 70145154--70145186 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
70145144 ACCACATAGG
70145154 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
70145187 TTGTAAAGAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:70146157 original size:39 final size:39
Alignment explanation
Indices: 70146100--70146229 Score: 183
Period size: 38 Copynumber: 3.4 Consensus size: 39
70146090 GCATGATATT
70146100 TGGAAACATATCCGGACTTGAGGTCCGCAGGCTACGTAC
1 TGGAAACATATCCGGACTTGAGGTCCGCAGGCTACGTAC
* * *
70146139 TGGAAACATATCCAGACTTGAGATCCGCAGGCTACGTGC
1 TGGAAACATATCCGGACTTGAGGTCCGCAGGCTACGTAC
** *
70146178 TGG-AACATATCCGGACTTGAGGTCCATAGGCTACGTCC
1 TGGAAACATATCCGGACTTGAGGTCCGCAGGCTACGTAC
*
70146216 TGG-AATATATCCGG
1 TGGAAACATATCCGG
70146230 GCCTACAATC
Statistics
Matches: 82, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
38 43 0.52
39 39 0.48
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.22
Consensus pattern (39 bp):
TGGAAACATATCCGGACTTGAGGTCCGCAGGCTACGTAC
Found at i:70147075 original size:39 final size:39
Alignment explanation
Indices: 70147021--70147142 Score: 208
Period size: 39 Copynumber: 3.1 Consensus size: 39
70147011 GCATGATATT
*
70147021 TGGAAACATATCCGGACTTGAGGTCCGTAGGCTACGTGC
1 TGGAAACATATCCGGACTTGAGGTCCGCAGGCTACGTGC
*
70147060 TGGAAACATATCCGGACTTGAGGTCCGCAAGCTACGTGC
1 TGGAAACATATCCGGACTTGAGGTCCGCAGGCTACGTGC
* *
70147099 TGGAAACATATCCTGACTTGAGGTCTGCAGGCTACGTGC
1 TGGAAACATATCCGGACTTGAGGTCCGCAGGCTACGTGC
70147138 TGGAA
1 TGGAA
70147143 TATATCTGGG
Statistics
Matches: 78, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 78 1.00
ACGTcount: A:0.25, C:0.23, G:0.30, T:0.23
Consensus pattern (39 bp):
TGGAAACATATCCGGACTTGAGGTCCGCAGGCTACGTGC
Found at i:70147407 original size:922 final size:922
Alignment explanation
Indices: 70145709--70147540 Score: 3222
Period size: 922 Copynumber: 2.0 Consensus size: 922
70145699 CTCAAGAGAA
*
70145709 AAAAGGGTCGAAATCAGATAGTGGAAAAGAGAAAGCAATCGAGTAGTCTATCCGTAACTGTTCAA
1 AAAAGGGTCGAAATCAGATAGGGGAAAAGAGAAAGCAATCGAGTAGTCTATCCGTAACTGTTCAA
* * *
70145774 ATATATCCGAGGTAAGTTTTGAGTAGTCTCCTTTATTATATAATTGATGATGCTTCTATACTAGT
66 ATATATCCGAGGTAAGTATTGAGTAGTCTCCTTTATTATATAATTGATGATGCCTCTATACGAGT
70145839 ATATTAGGTGAATTGCAATCTTTTGGTTTGTACTTAAATTAGGTCGTGAGATAAATAATTCATGT
131 ATATTAGGTGAATTGCAATCTTTTGGTTTGTACTTAAATTAGGTCGTGAGATAAATAATTCATGT
70145904 ATAAGACTTATAGTCTAATGGTCACTTTGGGTTTAAGCATGAATGGTGAAATAAATATGTGATAT
196 ATAAGACTTATAGTCTAATGGTCACTTTGGGTTTAAGCATGAATGGTGAAATAAATATGTGATAT
* * *
70145969 TACGTATGACTCTTGAGCCGAATAGTGAATGATGATATGCATATTTAGCTTATATCTGAATGTAG
261 TACGTACGACTCTTGAGCCGAATAGTGAAAGATGATATGCATATTTAGCTTATATCCGAATGTAG
*
70146034 CAAATGACTACTAAAGTGATAAGTCGAATCAGATGTGTTCAAATATGACTACGAATGCATGATAT
326 CAAATGACTACTAAAGTGATAAGTCGAATCAGATGTGTTCAAATATGACTAAGAATGCATGATAT
70146099 TTGGAAACATATCCGGACTTGAGGTCCGCAGGCTACGTACTGGAAACATATCCAGACTTGAGATC
391 TTGGAAACATATCCGGACTTGAGGTCCGCAGGCTACGTACTGGAAACATATCCAGACTTGAGATC
* *
70146164 CGCAGGCTACGTGCTGGAACATATCCGGACTTGAGGTCCATAGGCTACGTCCTGGAATATATCCG
456 CGCAAGCTACGTGCTGGAACATATCCGGACTTGAGGTCCACAGGCTACGTCCTGGAATATATCCG
* * *
70146229 GGCCTACAATCCCGCAGGCTTTGTGCTAGTAGTTGGATTCGAGTTTTAAAACCTAGCAGGGTTAA
521 GGCCTACAATCCCACAGGCTTTGTGCTAGTAGCTGGATTCGAGTTTTAAAACCTAGCAGGCTTAA
* * *
70146294 CGCCGGTGATTCGAGTAAGATTATGAATTTGAATATTCGAGGAAACCACTATTGATTATGTATGA
586 CGCCAGTGATTCGAGTAAGATTATGAATTCGAATATTCGAGGAAACCACTATTGATTAAGTATGA
*
70146359 TATATTAAGATGGACAGGTACGTATTATGTTCTCATATGTAAATTGATTTTTAAAGCGAATTATT
651 TATATTAAGATGGACAGGTACGTATTATGTTCTCATATGTAAATTGATTTTTAAAGCAAATTATT
70146424 ATTATCAAAGAATGATATATATATGAATATATATGTGTGGATGATTACCATATCTACGAATAAGA
716 ATTATCAAAGAATGATATATATATGAATATATATGTGTGGATGATTACCATATCTACGAATAAGA
* * * * *
70146489 GAATGGCCTA-TCTGGTCGACGACCGTTGTTATATGAAAGTATATGCCTAAATTTAATTATATGA
781 GAATGGCCTATTC-AGTCAACGACCATCGTTATATGAAAGCATATGCCTAAATTTAATTATATGA
70146553 GCCAAATAGTATAGTGAAAAATGTGCTGGAAATCTCTTGAGTATTCATATATATATTCGGCCAAT
845 GCCAAATAGTATAGTGAAAAATGTGCTGGAAATCTCTTGAGTATTCATATATATATTCGGCCAAT
70146618 ATGTAGTATAGTG
910 ATGTAGTATAGTG
70146631 AAAAGGGTCGAAATCAGATAGGGGAAAAGAGAAAGCAATCGAGTAGTCTATCCGTAACTGTTCAA
1 AAAAGGGTCGAAATCAGATAGGGGAAAAGAGAAAGCAATCGAGTAGTCTATCCGTAACTGTTCAA
70146696 ATATATCCGAGGTAAGTATTGAGTAGTCTCCTTTATTATATAATTGATGATGCCTCTATACGAGT
66 ATATATCCGAGGTAAGTATTGAGTAGTCTCCTTTATTATATAATTGATGATGCCTCTATACGAGT
* *
70146761 ATATTAGGTGAATTGCGATCTTTTGGTTTGTACTTAAATTAGGTTGTGAGATAAATAATTCATGT
131 ATATTAGGTGAATTGCAATCTTTTGGTTTGTACTTAAATTAGGTCGTGAGATAAATAATTCATGT
*
70146826 ATAAGACTTATAGTCTAATGGTCACTTTGGGTTTAAGCTTGAATGGTGAAAT-AATATGTGATAT
196 ATAAGACTTATAGTCTAATGGTCACTTTGGGTTTAAGCATGAATGGTGAAATAAATATGTGATAT
* *
70146890 TATGTACGACTCTTGAGCTGAATAGTGAAAGATGATATGCATATTTAGCTTATATCCGAATGTAG
261 TACGTACGACTCTTGAGCCGAATAGTGAAAGATGATATGCATATTTAGCTTATATCCGAATGTAG
*
70146955 CAAATGACTACTAAAGTGATAAGTCGAATGAGATGTGTTCAAATATGACTAAGAATGCATGATAT
326 CAAATGACTACTAAAGTGATAAGTCGAATCAGATGTGTTCAAATATGACTAAGAATGCATGATAT
* * * *
70147020 TTGGAAACATATCCGGACTTGAGGTCCGTAGGCTACGTGCTGGAAACATATCCGGACTTGAGGTC
391 TTGGAAACATATCCGGACTTGAGGTCCGCAGGCTACGTACTGGAAACATATCCAGACTTGAGATC
* ** * *
70147085 CGCAAGCTACGTGCTGGAAACATATCCTGACTTGAGGTCTGCAGGCTACGTGCTGGAATATATCT
456 CGCAAGCTACGTGCTGG-AACATATCCGGACTTGAGGTCCACAGGCTACGTCCTGGAATATATCC
70147150 GGGCCTA-AAGTCCCACAGGCTTTGTGCTAGTAGCTGGATTTCG-GTTTTAAAACCTAGCAGGCT
520 GGGCCTACAA-TCCCACAGGCTTTGTGCTAGTAGCTGGA-TTCGAGTTTTAAAACCTAGCAGGCT
70147213 TAACGCCAGTGATTCGAGTAAGATTATGAATTCGAATATTCGAGGAAACCACTATTGATTAAGTA
583 TAACGCCAGTGATTCGAGTAAGATTATGAATTCGAATATTCGAGGAAACCACTATTGATTAAGTA
*
70147278 TGATATATTAAGATGGCCAGGTACGTATTATGTTCTCATATGTAAATTGATTTTTAAAGCAAATT
648 TGATATATTAAGATGGACAGGTACGTATTATGTTCTCATATGTAAATTGATTTTTAAAGCAAATT
*
70147343 ATTATTATCAAAGAATGATATATATATGAATATATATGTGTGGATGATTACCGTATCTACGAATA
713 ATTATTATCAAAGAATGATATATATATGAATATATATGTGTGGATGATTACCATATCTACGAATA
*
70147408 AGAGAATGGCCTATTCAGTCAACGACCATCGTTATATGAAAGCATATGCCTAAATTTAATTGTAT
778 AGAGAATGGCCTATTCAGTCAACGACCATCGTTATATGAAAGCATATGCCTAAATTTAATTATAT
* *
70147473 GAGCCAAATAGTATAGTGAAAAATGTGCTGGAAATCTCTTGAGTCTTCATATATATATTTGGCCA
843 GAGCCAAATAGTATAGTGAAAAATGTGCTGGAAATCTCTTGAGTATTCATATATATATTCGGCCA
70147538 ATA
908 ATA
70147541 GGTCTTATAA
Statistics
Matches: 864, Mismatches: 42, Indels: 8
0.95 0.05 0.01
Matches are distributed among these distances:
921 214 0.25
922 644 0.75
923 6 0.01
ACGTcount: A:0.33, C:0.14, G:0.21, T:0.32
Consensus pattern (922 bp):
AAAAGGGTCGAAATCAGATAGGGGAAAAGAGAAAGCAATCGAGTAGTCTATCCGTAACTGTTCAA
ATATATCCGAGGTAAGTATTGAGTAGTCTCCTTTATTATATAATTGATGATGCCTCTATACGAGT
ATATTAGGTGAATTGCAATCTTTTGGTTTGTACTTAAATTAGGTCGTGAGATAAATAATTCATGT
ATAAGACTTATAGTCTAATGGTCACTTTGGGTTTAAGCATGAATGGTGAAATAAATATGTGATAT
TACGTACGACTCTTGAGCCGAATAGTGAAAGATGATATGCATATTTAGCTTATATCCGAATGTAG
CAAATGACTACTAAAGTGATAAGTCGAATCAGATGTGTTCAAATATGACTAAGAATGCATGATAT
TTGGAAACATATCCGGACTTGAGGTCCGCAGGCTACGTACTGGAAACATATCCAGACTTGAGATC
CGCAAGCTACGTGCTGGAACATATCCGGACTTGAGGTCCACAGGCTACGTCCTGGAATATATCCG
GGCCTACAATCCCACAGGCTTTGTGCTAGTAGCTGGATTCGAGTTTTAAAACCTAGCAGGCTTAA
CGCCAGTGATTCGAGTAAGATTATGAATTCGAATATTCGAGGAAACCACTATTGATTAAGTATGA
TATATTAAGATGGACAGGTACGTATTATGTTCTCATATGTAAATTGATTTTTAAAGCAAATTATT
ATTATCAAAGAATGATATATATATGAATATATATGTGTGGATGATTACCATATCTACGAATAAGA
GAATGGCCTATTCAGTCAACGACCATCGTTATATGAAAGCATATGCCTAAATTTAATTATATGAG
CCAAATAGTATAGTGAAAAATGTGCTGGAAATCTCTTGAGTATTCATATATATATTCGGCCAATA
TGTAGTATAGTG
Found at i:70149488 original size:42 final size:42
Alignment explanation
Indices: 70149429--70149634 Score: 135
Period size: 42 Copynumber: 4.8 Consensus size: 42
70149419 ATCGGTATCG
* *
70149429 GATTTCATGTAAGACCATATCTGGGATATGGCGTTGATATGA
1 GATTTCATGTAAGACCATATCTGGGACATGGCATTGATATGA
* * *
70149471 GATTTCTTGTAAGACCATGTCTGGGACATGGCATTGATATCA
1 GATTTCATGTAAGACCATATCTGGGACATGGCATTGATATGA
* ** * * * * *
70149513 GGTCCCGTGTAAGACCATATTTGAGACATGGAATCAGCAGTGACATGA
1 GATTTCATGTAAGACCATATCTGGGACAT-G-----GCATTGATATGA
* * * * * *
70149561 GACTTCATATAACATCATATCTGGGATATGGCATAGATATGTA
1 GATTTCATGTAAGACCATATCTGGGACATGGCATTGATATG-A
** * *
70149604 GA-CCCATGTAAGACCATGTCGGGGACATGGC
1 GATTTCATGTAAGACCATATCTGGGACATGGC
70149635 TTTGGCATTC
Statistics
Matches: 120, Mismatches: 37, Indels: 14
0.70 0.22 0.08
Matches are distributed among these distances:
42 88 0.73
43 4 0.03
47 1 0.01
48 27 0.22
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (42 bp):
GATTTCATGTAAGACCATATCTGGGACATGGCATTGATATGA
Found at i:70149620 original size:132 final size:132
Alignment explanation
Indices: 70149383--70149634 Score: 312
Period size: 132 Copynumber: 1.9 Consensus size: 132
70149373 ATTAATGAGA
* * * * ** * * *
70149383 TCCCGTGTAAGACTATTTTTGAGACATGGCATCGGCATCGGTATCGGATTTCATGTAAGACCATA
1 TCCCGTGTAAGACCATATTTGAGACATGGAATCAGCATCGACATCGGACTTCATATAACACCATA
* * ** * *
70149448 TCTGGGATATGGCGTTGATATGAGATTTCTTGTAAGACCATGTCTGGGACATGGCATTGATATCA
66 TCTGGGATATGGCATAGATATGAGATCCCATGTAAGACCATGTCGGGGACATGGCATTGATATCA
70149513 GG
131 GG
*
70149515 TCCCGTGTAAGACCATATTTGAGACATGGAATCAGCAGT-GACAT-GAGACTTCATATAACATCA
1 TCCCGTGTAAGACCATATTTGAGACATGGAATCAGCA-TCGACATCG-GACTTCATATAACACCA
70149578 TATCTGGGATATGGCATAGATATGTAGA-CCCATGTAAGACCATGTCGGGGACATGGC
64 TATCTGGGATATGGCATAGATATG-AGATCCCATGTAAGACCATGTCGGGGACATGGC
70149635 TTTGGCATTC
Statistics
Matches: 101, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
131 1 0.01
132 96 0.95
133 4 0.04
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (132 bp):
TCCCGTGTAAGACCATATTTGAGACATGGAATCAGCATCGACATCGGACTTCATATAACACCATA
TCTGGGATATGGCATAGATATGAGATCCCATGTAAGACCATGTCGGGGACATGGCATTGATATCA
GG
Found at i:70149741 original size:21 final size:22
Alignment explanation
Indices: 70149712--70149752 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
70149702 ATTCAAGATT
* *
70149712 ATGATTAAGAA-GTCTGGTAGA
1 ATGAGTAAGAATGTATGGTAGA
70149733 ATGAGTAAGAATGTATGGTA
1 ATGAGTAAGAATGTATGGTA
70149753 TAGGTATGTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.39, C:0.02, G:0.29, T:0.29
Consensus pattern (22 bp):
ATGAGTAAGAATGTATGGTAGA
Found at i:70157199 original size:48 final size:48
Alignment explanation
Indices: 70157077--70157292 Score: 176
Period size: 48 Copynumber: 4.6 Consensus size: 48
70157067 ATGAGATCCT
* * * * * * **
70157077 ATGTAAGACCATGTCTGGGACATGGTATCGGCATCTGAGATGAGAGCCC
1 ATGTAAGACCATATCTGGGATATGGCATCAGCATC-GATATGTGATTCC
* * * ** *
70157126 ATGTAAGACCATGTCTGGGACATGGCATTAGTGTTGATATGTG-TTCC
1 ATGTAAGACCATATCTGGGATATGGCATCAGCATCGATATGTGATTCC
* *
70157173 AATGTAAGACCATATCTGGGATATGGCATCAGCATCGGTATGTGATTTC
1 -ATGTAAGACCATATCTGGGATATGGCATCAGCATCGATATGTGATTCC
* * *
70157222 ATGTAAGACCATATCTGGGATATGG--T--G--TTGATATGAGATTTC
1 ATGTAAGACCATATCTGGGATATGGCATCAGCATCGATATGTGATTCC
* *
70157264 GTGTAAGACCATGTCTGGGATATGGCATC
1 ATGTAAGACCATATCTGGGATATGGCATC
70157293 GATATGAGGT
Statistics
Matches: 139, Mismatches: 23, Indels: 14
0.79 0.13 0.08
Matches are distributed among these distances:
42 35 0.25
44 2 0.01
46 1 0.01
47 2 0.01
48 67 0.48
49 32 0.23
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (48 bp):
ATGTAAGACCATATCTGGGATATGGCATCAGCATCGATATGTGATTCC
Found at i:70157331 original size:42 final size:42
Alignment explanation
Indices: 70157175--70157336 Score: 155
Period size: 42 Copynumber: 3.7 Consensus size: 42
70157165 TGTGTTCCAA
* * * *
70157175 TGTAAGACCATATCTGGGATATGGCATCAGCATCGGTATGTGATTTCA
1 TGTAAGACCATGTCTGGGATATGGCATC-G-A----TATGAGATCTCG
* ** * *
70157223 TGTAAGACCATATCTGGGATATGGTGTTGATATGAGATTTCG
1 TGTAAGACCATGTCTGGGATATGGCATCGATATGAGATCTCG
*
70157265 TGTAAGACCATGTCTGGGATATGGCATCGATATGAGGTC-CTG
1 TGTAAGACCATGTCTGGGATATGGCATCGATATGAGATCTC-G
*
70157307 TGTAAGACCATGTCTGGGACATGGCATCGA
1 TGTAAGACCATGTCTGGGATATGGCATCGA
70157337 CAGCGACATG
Statistics
Matches: 101, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
41 1 0.01
42 73 0.72
46 1 0.01
47 1 0.01
48 25 0.25
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGATATGGCATCGATATGAGATCTCG
Found at i:70157410 original size:90 final size:90
Alignment explanation
Indices: 70157254--70157421 Score: 221
Period size: 90 Copynumber: 1.9 Consensus size: 90
70157244 TGGTGTTGAT
* * * * * * * **
70157254 ATGAGATTTCGTGTAAGACCATGTCTGGGATATGGCATCGATATGAGGTCCTGTGTAAGACCATG
1 ATGAGACTTCGTATAACACCATATCTAGGATATGGCATCGATATGAAGACCCATGTAAGACCATG
*
70157319 TCTGGGACATGGCATCGACAGCGAC
66 TCGGGGACATGGCATCGACAGCGAC
*
70157344 ATGAGACTTCGTATAACACCATATCTAGGATATGGCATCGATAT-ATAGACCCATGTAAGACTAT
1 ATGAGACTTCGTATAACACCATATCTAGGATATGGCATCGATATGA-AGACCCATGTAAGACCAT
70157408 GTCGGGGACATGGC
65 GTCGGGGACATGGC
70157422 TTTGGCATTC
Statistics
Matches: 66, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
89 1 0.02
90 65 0.98
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.26
Consensus pattern (90 bp):
ATGAGACTTCGTATAACACCATATCTAGGATATGGCATCGATATGAAGACCCATGTAAGACCATG
TCGGGGACATGGCATCGACAGCGAC
Found at i:70158957 original size:10 final size:10
Alignment explanation
Indices: 70158942--70158968 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
70158932 AAGTATAAAT
70158942 TTTATATGTA
1 TTTATATGTA
70158952 TTTATATGTA
1 TTTATATGTA
70158962 TTTATAT
1 TTTATAT
70158969 ATATAAATGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (10 bp):
TTTATATGTA
Found at i:70160403 original size:2 final size:2
Alignment explanation
Indices: 70160396--70160442 Score: 85
Period size: 2 Copynumber: 23.5 Consensus size: 2
70160386 TGAAAGTCGA
70160396 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
70160438 TT AT A
1 AT AT A
70160443 AAGTGATGCT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:70161734 original size:38 final size:38
Alignment explanation
Indices: 70161630--70161824 Score: 167
Period size: 38 Copynumber: 5.0 Consensus size: 38
70161620 ATTTGATGTG
* * * *
70161630 TATCCGGGCTTAAAGACCCGCAGGCTAT-ATGCTAGAATTA
1 TATCCGGG-TTAAA-TCCCGCAGGCT-TCGTGCTGGTATTA
* ** *
70161670 TATCTGGGTTAAATCCTACAGGCTTCGTGCTGGTAATA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
** *
70161708 TATCCGGGTTAAATCCCGCAAACTTCGTGATGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
* * * *
70161746 TATCCAGGTTAAATCTCGCAGGCCTAGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
* * * *
70161784 TATCTGAGTTTAAAGTCCCGTAGGCTTCGTGCTGGTGTTA
1 TATCCG-GGTTAAA-TCCCGCAGGCTTCGTGCTGGTATTA
70161824 T
1 T
70161825 GCTTGGGTTT
Statistics
Matches: 122, Mismatches: 30, Indels: 6
0.77 0.19 0.04
Matches are distributed among these distances:
37 1 0.01
38 82 0.67
39 11 0.09
40 28 0.23
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.32
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
Found at i:70167225 original size:40 final size:40
Alignment explanation
Indices: 70167180--70167309 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
70167170 CGGAATACAA
70167180 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
70167220 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * * *
70167260 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
70167300 CCGGATATAA
1 CCGGATATAA
70167310 TTTCCAGCAA
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:70175320 original size:40 final size:40
Alignment explanation
Indices: 70175275--70175404 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
70175265 CGGAATACAA
70175275 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
70175315 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * * *
70175355 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
70175395 CCGGATATAA
1 CCGGATATAA
70175405 TTTCCAGCAA
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:70177815 original size:28 final size:28
Alignment explanation
Indices: 70177769--70177833 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
70177759 TCAGTGTATG
* *
70177769 AAATATTGAGAATGGCACTTAATGTGCG
1 AAATATTGAGAATGACACTTAATGTGCA
* *
70177797 AGATATTGAGAATGACACTTAGTGTGCA
1 AAATATTGAGAATGACACTTAATGTGCA
70177825 AAATATTGA
1 AAATATTGA
70177834 ATGATTAAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.38, C:0.09, G:0.23, T:0.29
Consensus pattern (28 bp):
AAATATTGAGAATGACACTTAATGTGCA
Found at i:70177950 original size:39 final size:39
Alignment explanation
Indices: 70177906--70178156 Score: 326
Period size: 39 Copynumber: 6.5 Consensus size: 39
70177896 GACTTTATAA
*
70177906 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGT
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
* * *
70177945 TGGTGTT-TATCTGGGCTAAGTCCTGAAGGCATTCATGC
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
* ** * * *
70177983 TGGTTTTATATCTAGGCTAAGTCCCAAAGTCATTCATGC
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
70178022 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
*
70178061 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
** * *
70178100 TGGTGTTATATCCGGGCTAAAGTTTCGCAGGC-TTTGTGC
1 TGGTGTTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGC
* *
70178139 TAGTATTATATCCGGGCT
1 TGGTGTTATATCCGGGCT
70178157 TAAAGTACCG
Statistics
Matches: 187, Mismatches: 23, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
38 33 0.18
39 145 0.78
40 9 0.05
ACGTcount: A:0.19, C:0.21, G:0.28, T:0.32
Consensus pattern (39 bp):
TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
Found at i:70178174 original size:40 final size:39
Alignment explanation
Indices: 70178027--70178177 Score: 135
Period size: 39 Copynumber: 3.8 Consensus size: 39
70178017 CATGCTGGTG
* * * * *
70178027 TTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAAGTACCGCAGGC-TTTGTGCTAGTA
** * * * *
70178066 TTATATCCGGGCT-AAGCCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAAGTACCGCAGGC-TTTGTGCTAGTA
**
70178105 TTATATCCGGGCTAAAGTTTCGCAGGCTTTGTGCTAGTA
1 TTATATCCGGGCTAAAGTACCGCAGGCTTTGTGCTAGTA
*
70178144 TTATATCCGGGCTTAAAGTACCGCATGCTTTGTG
1 TTATATCCGGGC-TAAAGTACCGCAGGCTTTGTG
70178178 GTGGTGATTG
Statistics
Matches: 99, Mismatches: 11, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
39 72 0.73
40 27 0.27
ACGTcount: A:0.19, C:0.22, G:0.28, T:0.31
Consensus pattern (39 bp):
TTATATCCGGGCTAAAGTACCGCAGGCTTTGTGCTAGTA
Found at i:70181071 original size:39 final size:40
Alignment explanation
Indices: 70180991--70181155 Score: 149
Period size: 40 Copynumber: 4.2 Consensus size: 40
70180981 GATTGAATGA
* * * ** *
70180991 ATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTAT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTGACTAT
* * *
70181031 ATCCGGG-TTAGACCCGAAGGCAATTGTGCTAGTGGCTAT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGACTAT
* * *
70181070 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATTCT
1 ATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTGACTAT
* *
70181110 ATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATTAT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GTGACTAT
70181150 ATCCGG
1 ATCCGG
70181156 TTATATTCCG
Statistics
Matches: 102, Mismatches: 18, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
39 33 0.32
40 67 0.66
41 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGACTAT
Done.