Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 224 of 318
Found at i:70558931 original size:81 final size:81
Alignment explanation
Indices: 70558791--70558963 Score: 213
Period size: 81 Copynumber: 2.1 Consensus size: 81
70558781 ATTACCAAAG
* * * **
70558791 TACCCTCGATTTACAGAATTACTGATTCACCCTCGATTTAGAAAATTACTGTTTCACCCTCGA-T
1 TACCCTCGATTTACAAAATTACCGATTCACCCTCGATTTACAAAATTACCATTTCACCCT-GAGT
* *
70558855 TTATAGAATTACCATTT
65 TTACAAAATTACCATTT
* * * *
70558872 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAAAATTACCATTTTACCCTTAGTT
1 TACCCTCGATTTACAAAATTACCGATTCACCCTCGATTTACAAAATTACCATTTCACCCTGAGTT
**
70558937 TACAAAATTACTGTTT
66 TACAAAATTACCATTT
70558953 TACCCTCGATT
1 TACCCTCGATT
70558964 GTGAAATTAC
Statistics
Matches: 78, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
80 1 0.01
81 77 0.99
ACGTcount: A:0.29, C:0.24, G:0.08, T:0.38
Consensus pattern (81 bp):
TACCCTCGATTTACAAAATTACCGATTCACCCTCGATTTACAAAATTACCATTTCACCCTGAGTT
TACAAAATTACCATTT
Found at i:70559025 original size:27 final size:27
Alignment explanation
Indices: 70558995--70559145 Score: 182
Period size: 27 Copynumber: 5.6 Consensus size: 27
70558985 TATAGGATAG
70558995 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
70559022 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * *
70559049 AATTACCGAAATACCACT-GTTTTGTGA
1 AATTACCAAAATACCCCTAG-TTTGTAA
* *
70559076 AATTACCGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AGTTTGTAA
**
70559103 AATTACCAAAATACCCCT-GATTTACAA
1 AATTACCAAAATACCCCTAG-TTTGTAA
*
70559130 AATTACAAAAATACCC
1 AATTACCAAAATACCC
70559146 TTGACTTTTT
Statistics
Matches: 108, Mismatches: 11, Indels: 10
0.84 0.09 0.08
Matches are distributed among these distances:
26 4 0.04
27 100 0.93
28 4 0.04
ACGTcount: A:0.42, C:0.23, G:0.07, T:0.28
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:70559036 original size:54 final size:53
Alignment explanation
Indices: 70558962--70559145 Score: 190
Period size: 54 Copynumber: 3.4 Consensus size: 53
70558952 TTACCCTCGA
* ** ** *
70558962 TTGTGAAATTACTGAAATACCCCTATAGGATAGAATTACCAAAATACCCCT-AGT
1 TTGTAAAATTACCAAAATACCCCTATTTG-TAAAATTACCAAAATACCCCTGA-T
* * *
70559016 TTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCGAAATACCACTGTT
1 TTGTAAAATTACCAAAATACCCCTA-TTTGTAAAATTACCAAAATACCCCTGAT
* * *
70559070 TTGTGAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGAT
1 TTGTAAAATTACCAAAATACCC-CTATTTGTAAAATTACCAAAATACCCCTGAT
** *
70559124 TTACAAAATTACAAAAATACCC
1 TTGTAAAATTACCAAAATACCC
70559146 TTGACTTTTT
Statistics
Matches: 107, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
54 103 0.96
55 4 0.04
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (53 bp):
TTGTAAAATTACCAAAATACCCCTATTTGTAAAATTACCAAAATACCCCTGAT
Found at i:70559132 original size:81 final size:81
Alignment explanation
Indices: 70558995--70559144 Score: 214
Period size: 81 Copynumber: 1.9 Consensus size: 81
70558985 TATAGGATAG
* ** **
70558995 AATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCGAAA
1 AATTACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCCCTAGTTTACAAAATTACAAAAA
70559060 TACCACTGTTTTGTGA
66 TACCACTGTTTTGTGA
*
70559076 AATTACCGAAATA-CCCTCAATTTGTAAAATTACCAAAATACCCCT-GATTTACAAAATTACAAA
1 AATTACCAAAATACCCCT-AATTTGTAAAATTACCAAAATACCCCTAG-TTTACAAAATTACAAA
70559139 AATACC
64 AATACC
70559145 CTTGACTTTT
Statistics
Matches: 61, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
80 5 0.08
81 56 0.92
ACGTcount: A:0.42, C:0.22, G:0.07, T:0.29
Consensus pattern (81 bp):
AATTACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCCCTAGTTTACAAAATTACAAAAA
TACCACTGTTTTGTGA
Found at i:70559146 original size:54 final size:54
Alignment explanation
Indices: 70558995--70559202 Score: 179
Period size: 54 Copynumber: 3.8 Consensus size: 54
70558985 TATAGGATAG
* ** *
70558995 AATTACCAAAATACCCCT-AGTTTGTAAAATTACCAAAATACCC-CTAGTTTGTAA
1 AATTACCAAAATACCACTGA-TTTACAAAATTACCAAAATACCCTC-AATTTGTAA
* * *** *
70559049 AATTACCGAAATACCACTGTTTTGTGAAATTACCGAAATACCCTCAATTTGTAA
1 AATTACCAAAATACCACTGATTTACAAAATTACCAAAATACCCTCAATTTGTAA
* * * * *
70559103 AATTACCAAAATACCCCTGATTTACAAAATTACAAAAATACCCTTGACTTTTTAGA
1 AATTACCAAAATACCACTGATTTACAAAATTACCAAAATACCC-TCAATTTGTA-A
* * * *
70559159 AATTA-TAGAAATACCATTGGTTTACAAAATTACTAAAATACCCT
1 AATTACCA-AAATACCACTGATTTACAAAATTACCAAAATACCCT
70559203 TGGTTTGTAG
Statistics
Matches: 127, Mismatches: 22, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
54 80 0.63
55 10 0.08
56 37 0.29
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (54 bp):
AATTACCAAAATACCACTGATTTACAAAATTACCAAAATACCCTCAATTTGTAA
Found at i:70559197 original size:27 final size:27
Alignment explanation
Indices: 70559101--70559208 Score: 110
Period size: 27 Copynumber: 3.9 Consensus size: 27
70559091 CTCAATTTGT
* * *
70559101 AAAATTACCAAAATACCCCTGATTTAC
1 AAAATTACTAAAATACCCTTGGTTTAC
* * **
70559128 AAAATTACAAAAATACCCTTGACTTTTT
1 AAAATTACTAAAATACCCTTG-GTTTAC
*
70559156 AGAAATTA-TAGAAATACCATTGGTTTAC
1 A-AAATTACTA-AAATACCCTTGGTTTAC
70559184 AAAATTACTAAAATACCCTTGGTTT
1 AAAATTACTAAAATACCCTTGGTTT
70559209 GTAGATTTAC
Statistics
Matches: 66, Mismatches: 11, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
27 39 0.59
28 11 0.17
29 16 0.24
ACGTcount: A:0.43, C:0.18, G:0.07, T:0.32
Consensus pattern (27 bp):
AAAATTACTAAAATACCCTTGGTTTAC
Found at i:70559314 original size:27 final size:26
Alignment explanation
Indices: 70559280--70559711 Score: 492
Period size: 27 Copynumber: 16.1 Consensus size: 26
70559270 GACTGTAAAG
*
70559280 CCCCTGTAAGGTAGAATTATCGCAATA
1 CCCCTGTAAGGTAGAATTA-CGAAATA
*
70559307 CCCTTGTAAGGTAGAATTACCG-AATA
1 CCCCTGTAAGGTAGAATTA-CGAAATA
70559333 CCCCTGT-AGTGTAGAATTACTGAAATA
1 CCCCTGTAAG-GTAGAATTAC-GAAATA
*
70559360 -CCTTGTAAGGTAGAATTACCGAAATA
1 CCCCTGTAAGGTAGAATTA-CGAAATA
* * *
70559386 CCCCTGTAGGGTAAAATTACTAAAATA
1 CCCCTGTAAGGTAGAATTAC-GAAATA
70559413 CCCCTGTAAGGTAGAATTACCGAAATA
1 CCCCTGTAAGGTAGAATTA-CGAAATA
* *
70559440 CCCCTGTAAGGTAAAATTACTAAAATA
1 CCCCTGTAAGGTAGAATTAC-GAAATA
*
70559467 CCCCTGTAAGGTAAAATTACTGAAATA
1 CCCCTGTAAGGTAGAATTAC-GAAATA
* * **
70559494 CCCCTATATGGTAGAATTATTAAAATA
1 CCCCTGTAAGGTAGAATTA-CGAAATA
* * *
70559521 CCCCTATATGATAGAATTACTGAAATA
1 CCCCTGTAAGGTAGAATTAC-GAAATA
*
70559548 CCCCTGTAGGGTAGAATTATCGAAATA
1 CCCCTGTAAGGTAGAATTA-CGAAATA
*
70559575 TCCCTGTAAGGTAGAATTACCGAAATA
1 CCCCTGTAAGGTAGAATTA-CGAAATA
*
70559602 CCCCTGTAAGGTAGAATTATCGCAATA
1 CCCCTGTAAGGTAGAATTA-CGAAATA
70559629 CCCCTGTAAGGTAGAATTACTGAAATA
1 CCCCTGTAAGGTAGAATTAC-GAAATA
* *
70559656 CCCCTGTAGGGTAGAATTACTAAAATA
1 CCCCTGTAAGGTAGAATTAC-GAAATA
*
70559683 CCCCTGTAAGGTAGAATTATCGAGATA
1 CCCCTGTAAGGTAGAATTA-CGAAATA
70559710 CC
1 CC
70559712 TTGTGGGGTA
Statistics
Matches: 354, Mismatches: 37, Indels: 28
0.84 0.09 0.07
Matches are distributed among these distances:
25 3 0.01
26 43 0.12
27 305 0.86
28 3 0.01
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.27
Consensus pattern (26 bp):
CCCCTGTAAGGTAGAATTACGAAATA
Found at i:70559443 original size:54 final size:54
Alignment explanation
Indices: 70559280--70559711 Score: 559
Period size: 54 Copynumber: 8.0 Consensus size: 54
70559270 GACTGTAAAG
* ** *
70559280 CCCCTGTAAGGTAGAATTA-TCGCAATACCCTTGTAAGGTAGAATTACCG-AATA
1 CCCCTGTAGGGTAGAATTACT-AAAATACCCCTGTAAGGTAGAATTACCGAAATA
* * *
70559333 CCCCTGTAGTGTAGAATTACTGAAATA-CCTTGTAAGGTAGAATTACCGAAATA
1 CCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAAGGTAGAATTACCGAAATA
*
70559386 CCCCTGTAGGGTAAAATTACTAAAATACCCCTGTAAGGTAGAATTACCGAAATA
1 CCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAAGGTAGAATTACCGAAATA
* * * *
70559440 CCCCTGTAAGGTAAAATTACTAAAATACCCCTGTAAGGTAAAATTACTGAAATA
1 CCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAAGGTAGAATTACCGAAATA
* * * * * * *
70559494 CCCCTATATGGTAGAATTATTAAAATACCCCTATATGATAGAATTACTGAAATA
1 CCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAAGGTAGAATTACCGAAATA
* *
70559548 CCCCTGTAGGGTAGAATTA-TCGAAATATCCCTGTAAGGTAGAATTACCGAAATA
1 CCCCTGTAGGGTAGAATTACT-AAAATACCCCTGTAAGGTAGAATTACCGAAATA
* ** *
70559602 CCCCTGTAAGGTAGAATTA-TCGCAATACCCCTGTAAGGTAGAATTACTGAAATA
1 CCCCTGTAGGGTAGAATTACT-AAAATACCCCTGTAAGGTAGAATTACCGAAATA
* *
70559656 CCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAAGGTAGAATTATCGAGATA
1 CCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAAGGTAGAATTACCGAAATA
70559710 CC
1 CC
70559712 TTGTGGGGTA
Statistics
Matches: 338, Mismatches: 36, Indels: 9
0.88 0.09 0.02
Matches are distributed among these distances:
52 21 0.06
53 51 0.15
54 265 0.78
55 1 0.00
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.27
Consensus pattern (54 bp):
CCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAAGGTAGAATTACCGAAATA
Found at i:70559702 original size:81 final size:81
Alignment explanation
Indices: 70559280--70559711 Score: 552
Period size: 81 Copynumber: 5.4 Consensus size: 81
70559270 GACTGTAAAG
* * *
70559280 CCCCTGTAAGGTAGAATTATCGCAATACCCTTGTAAGGTAGAATTACCG-AATACCCCTGT-AGT
1 CCCCTGTAAGGTAGAATTATCGAAATACCCCTGTAAGGTAGAATTACTGAAATACCCCTGTAAG-
70559343 GTAGAATTACTGAAATA
65 GTAGAATTACTGAAATA
* * * * *
70559360 -CCTTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAAAATTACTAAAATACCCCTGTAAGG
1 CCCCTGTAAGGTAGAATTATCGAAATACCCCTGTAAGGTAGAATTACTGAAATACCCCTGTAAGG
*
70559424 TAGAATTACCGAAATA
66 TAGAATTACTGAAATA
* * * * *
70559440 CCCCTGTAAGGTAAAATTA-CTAAAATACCCCTGTAAGGTAAAATTACTGAAATACCCCTATATG
1 CCCCTGTAAGGTAGAATTATC-GAAATACCCCTGTAAGGTAGAATTACTGAAATACCCCTGTAAG
* *
70559504 GTAGAATTATTAAAATA
65 GTAGAATTACTGAAATA
* * * * *
70559521 CCCCTATATGATAGAATTA-CTGAAATACCCCTGTAGGGTAGAATTA-TCGAAATATCCCTGTAA
1 CCCCTGTAAGGTAGAATTATC-GAAATACCCCTGTAAGGTAGAATTACT-GAAATACCCCTGTAA
*
70559584 GGTAGAATTACCGAAATA
64 GGTAGAATTACTGAAATA
* *
70559602 CCCCTGTAAGGTAGAATTATCGCAATACCCCTGTAAGGTAGAATTACTGAAATACCCCTGTAGGG
1 CCCCTGTAAGGTAGAATTATCGAAATACCCCTGTAAGGTAGAATTACTGAAATACCCCTGTAAGG
*
70559667 TAGAATTACTAAAATA
66 TAGAATTACTGAAATA
*
70559683 CCCCTGTAAGGTAGAATTATCGAGATACC
1 CCCCTGTAAGGTAGAATTATCGAAATACC
70559712 TTGTGGGGTA
Statistics
Matches: 302, Mismatches: 43, Indels: 13
0.84 0.12 0.04
Matches are distributed among these distances:
79 40 0.13
80 29 0.10
81 231 0.76
82 2 0.01
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.27
Consensus pattern (81 bp):
CCCCTGTAAGGTAGAATTATCGAAATACCCCTGTAAGGTAGAATTACTGAAATACCCCTGTAAGG
TAGAATTACTGAAATA
Found at i:70561923 original size:40 final size:40
Alignment explanation
Indices: 70561838--70561988 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
70561828 AATTGAATGA
* * *
70561838 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
70561878 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
70561919 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
70561958 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
70561989 ACGTGATTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:70562002 original size:40 final size:40
Alignment explanation
Indices: 70561874--70562004 Score: 156
Period size: 40 Copynumber: 3.3 Consensus size: 40
70561864 TATGCTGGAA
* * *
70561874 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
70561914 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
70561954 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
70561994 ATTATATCCGG
1 ATTATATCCGG
70562005 TTATATTCCG
Statistics
Matches: 73, Mismatches: 17, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:70569907 original size:40 final size:40
Alignment explanation
Indices: 70569822--70569972 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
70569812 AATTGAATGA
* * *
70569822 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
70569862 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
70569903 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
70569942 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
70569973 ACGTGATTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:70569986 original size:40 final size:40
Alignment explanation
Indices: 70569858--70569988 Score: 156
Period size: 40 Copynumber: 3.3 Consensus size: 40
70569848 TATGCTGGAA
* * *
70569858 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
70569898 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
70569938 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
70569978 ATTATATCCGG
1 ATTATATCCGG
70569989 TTATATTCCG
Statistics
Matches: 73, Mismatches: 17, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:70571370 original size:22 final size:23
Alignment explanation
Indices: 70571339--70571403 Score: 71
Period size: 22 Copynumber: 2.9 Consensus size: 23
70571329 TTTGGGGTGT
* *
70571339 TACATTATGGCTTTGTGTCAACC
1 TACATTATGGCTCTGTGCCAACC
70571362 TACA-TATGGCTCTGTGCCAACC
1 TACATTATGGCTCTGTGCCAACC
* * *
70571384 T-GATTATGGTTGTGTGCCAA
1 TACATTATGGCTCTGTGCCAA
70571404 ACGTATTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
21 1 0.03
22 31 0.86
23 4 0.11
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.35
Consensus pattern (23 bp):
TACATTATGGCTCTGTGCCAACC
Found at i:70571598 original size:27 final size:26
Alignment explanation
Indices: 70571561--70571661 Score: 103
Period size: 27 Copynumber: 3.8 Consensus size: 26
70571551 ATTTTGTTAA
* *
70571561 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTATGCCACAATATCTG-TTCTG
*
70571588 GTGGCTATGCCACAAATATCTGTTCTA
1 GTGGCTATGCCAC-AATATCTGTTCTG
* *
70571615 GTGGCTCTGCCACAATATCTGCATCTG
1 GTGGCTATGCCACAATATCTG-TTCTG
* * *
70571642 GTGACTCTGTCACAATATCT
1 GTGGCTATGCCACAATATCT
70571662 AATAACTGAG
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
26 8 0.12
27 49 0.77
28 7 0.11
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.36
Consensus pattern (26 bp):
GTGGCTATGCCACAATATCTGTTCTG
Found at i:70571626 original size:54 final size:53
Alignment explanation
Indices: 70571560--70571661 Score: 132
Period size: 54 Copynumber: 1.9 Consensus size: 53
70571550 TATTTTGTTA
* * ** *
70571560 AGTGGCTTTGCCACATTATCTGTTTCTGGTGGCTATGCCACAAATATCTGTTCT
1 AGTGGCTCTGCCACAATATCTGCATCTGGTGACTATGCCAC-AATATCTGTTCT
* *
70571614 AGTGGCTCTGCCACAATATCTGCATCTGGTGACTCTGTCACAATATCT
1 AGTGGCTCTGCCACAATATCTGCATCTGGTGACTATGCCACAATATCT
70571662 AATAACTGAG
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
53 7 0.17
54 34 0.83
ACGTcount: A:0.21, C:0.25, G:0.20, T:0.35
Consensus pattern (53 bp):
AGTGGCTCTGCCACAATATCTGCATCTGGTGACTATGCCACAATATCTGTTCT
Found at i:70573176 original size:29 final size:28
Alignment explanation
Indices: 70573143--70573240 Score: 99
Period size: 28 Copynumber: 3.4 Consensus size: 28
70573133 GTGAATCCGT
*
70573143 ACACTTAGTGCTATATACATTC-AGCTCGC
1 ACACTTAGTGCTATATA-A-TCAAACTCGC
70573172 ACACTTAGTGCTATATAATCAAACTCGC
1 ACACTTAGTGCTATATAATCAAACTCGC
* * * * *
70573200 ACACTTGGTGCTGTACAATTTTAAACCCGC
1 ACACTTAGTGCTATATAA--TCAAACTCGC
70573230 ACACTTAGTGC
1 ACACTTAGTGC
70573241 CAATCTTGTC
Statistics
Matches: 59, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
27 2 0.03
28 22 0.37
29 17 0.29
30 18 0.31
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
ACACTTAGTGCTATATAATCAAACTCGC
Found at i:70575115 original size:6 final size:6
Alignment explanation
Indices: 70575076--70575139 Score: 53
Period size: 6 Copynumber: 10.3 Consensus size: 6
70575066 TTGTATTCAC
*
70575076 ATTCTG ATTTTTG ATTCTG -TTACCTG ATAT-TG ATTCTG ATTCTG ATTCTG
1 ATTCTG A-TTCTG ATTCTG ATT--CTG AT-TCTG ATTCTG ATTCTG ATTCTG
70575126 ATTCT- AGTTCTG AT
1 ATTCTG A-TTCTG AT
70575140 AATGTTTCTT
Statistics
Matches: 48, Mismatches: 2, Indels: 16
0.73 0.03 0.24
Matches are distributed among these distances:
5 4 0.08
6 33 0.69
7 9 0.19
8 1 0.02
9 1 0.02
ACGTcount: A:0.19, C:0.14, G:0.16, T:0.52
Consensus pattern (6 bp):
ATTCTG
Found at i:70580639 original size:55 final size:53
Alignment explanation
Indices: 70580502--70580709 Score: 240
Period size: 55 Copynumber: 3.8 Consensus size: 53
70580492 ATCCTTTTGA
* *
70580502 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
1 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
* * * *
70580555 AACTCATCAATGCCATGCCTTGACATGGTCTTTCATGGGA-CCTTTGCCTTATAG
1 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGGTATCC-TTGCCTTAT-G
70580609 TAACTTATCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTA-G
1 -AACTTATCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
* ** * * *
70580662 AAACCTTACCAATTATCATGCCTTGGCATGGTCTTAAATGGTATCCTT
1 -AA-CTTATCAA-TGCCATGTCTTGACATGGTCTTACATGGTATCCTT
70580710 AAACCCTAAT
Statistics
Matches: 132, Mismatches: 17, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
52 2 0.02
53 46 0.35
54 8 0.06
55 74 0.56
56 2 0.02
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.36
Consensus pattern (53 bp):
AACTTATCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
Found at i:70587581 original size:16 final size:16
Alignment explanation
Indices: 70587556--70587594 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
70587546 TTATATACTT
70587556 ACTTACTAAGCTATAA
1 ACTTACTAAGCTATAA
*
70587572 ACTTATTAAGCTATAA
1 ACTTACTAAGCTATAA
*
70587588 GCTTACT
1 ACTTACT
70587595 TTCTTTTCTC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.38, C:0.18, G:0.08, T:0.36
Consensus pattern (16 bp):
ACTTACTAAGCTATAA
Found at i:70593383 original size:21 final size:20
Alignment explanation
Indices: 70593325--70593386 Score: 58
Period size: 19 Copynumber: 3.1 Consensus size: 20
70593315 TATATAGATG
70593325 GTAT-GTAGCTAGGTCACAT
1 GTATGGTAGCTAGGTCACAT
* *
70593344 GTATGGT-GCCAAGTGCACAT
1 GTATGGTAGCTAGGT-CACAT
70593364 -TATGTGGTAGCTAGGTCACAT
1 GTA--TGGTAGCTAGGTCACAT
70593385 GT
1 GT
70593387 GTGATACAGG
Statistics
Matches: 33, Mismatches: 4, Indels: 9
0.72 0.09 0.20
Matches are distributed among these distances:
19 11 0.33
20 7 0.21
21 9 0.27
22 6 0.18
ACGTcount: A:0.24, C:0.16, G:0.29, T:0.31
Consensus pattern (20 bp):
GTATGGTAGCTAGGTCACAT
Found at i:70595357 original size:27 final size:26
Alignment explanation
Indices: 70595298--70595384 Score: 102
Period size: 27 Copynumber: 3.2 Consensus size: 26
70595288 GGAGGAAGCA
*
70595298 TTCTGGTGGCTCTGCCACAAATATCTAT
1 TTCTGGTGGCTCTGCCAC-AATATCT-G
* *
70595326 TTCTGGTGGCTTTGCCACAATATTTG
1 TTCTGGTGGCTCTGCCACAATATCTG
* *
70595352 TGTCTGGTGACTCTGTCACAATATCTG
1 T-TCTGGTGGCTCTGCCACAATATCTG
70595379 TTCTGG
1 TTCTGG
70595385 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 7, Indels: 4
0.82 0.11 0.06
Matches are distributed among these distances:
26 6 0.12
27 28 0.55
28 17 0.33
ACGTcount: A:0.17, C:0.22, G:0.22, T:0.39
Consensus pattern (26 bp):
TTCTGGTGGCTCTGCCACAATATCTG
Found at i:70602902 original size:32 final size:33
Alignment explanation
Indices: 70602856--70602919 Score: 85
Period size: 33 Copynumber: 2.0 Consensus size: 33
70602846 AACAACAGGT
70602856 ACTGGGCCGGAGCCC-TCTTCAGAAAACAGTAA
1 ACTGGGCCGGAGCCCTTCTTCAGAAAACAGTAA
** * *
70602888 ACTGGGCCTTAGCCCTTTTTCAGATAACAGTA
1 ACTGGGCCGGAGCCCTTCTTCAGAAAACAGTA
70602920 TGGCCCATAG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 13 0.48
33 14 0.52
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (33 bp):
ACTGGGCCGGAGCCCTTCTTCAGAAAACAGTAA
Found at i:70605240 original size:29 final size:29
Alignment explanation
Indices: 70605204--70605304 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 29
70605194 TGAAAGTGAC
*
70605204 TGGGCCTAACGGGCCATATAAATGTGATT
1 TGGGCCTAATGGGCCATATAAATGTGATT
* *
70605233 TGGGCCTAATGGGCCATATATAGGTGATT
1 TGGGCCTAATGGGCCATATAAATGTGATT
* ** *
70605262 TGTGCCT-ATGGGCCATACGAATATGA-T
1 TGGGCCTAATGGGCCATATAAATGTGATT
*
70605289 TGGGCCTATTGGGCCA
1 TGGGCCTAATGGGCCA
70605305 GATACAGGTA
Statistics
Matches: 60, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
27 7 0.12
28 21 0.35
29 32 0.53
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.29
Consensus pattern (29 bp):
TGGGCCTAATGGGCCATATAAATGTGATT
Found at i:70605288 original size:28 final size:26
Alignment explanation
Indices: 70605221--70605304 Score: 80
Period size: 28 Copynumber: 3.0 Consensus size: 26
70605211 AACGGGCCAT
*
70605221 ATAAATGTGATTTGGGCCTAATGGGCC
1 ATAAATATGATTTGGGCCT-ATGGGCC
* *
70605248 ATATATAGGTGATTTGTGCCTATGGGCC
1 ATAAATA--TGATTTGGGCCTATGGGCC
70605276 ATACGAATATGA-TTGGGCCTATTGGGCC
1 ATA--AATATGATTTGGGCCTA-TGGGCC
70605304 A
1 A
70605305 GATACAGGTA
Statistics
Matches: 47, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
27 13 0.28
28 20 0.43
29 11 0.23
30 3 0.06
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.31
Consensus pattern (26 bp):
ATAAATATGATTTGGGCCTATGGGCC
Found at i:70609671 original size:28 final size:29
Alignment explanation
Indices: 70609609--70609734 Score: 177
Period size: 28 Copynumber: 4.4 Consensus size: 29
70609599 GAATGTGACA
* *
70609609 GGGCCTAATAGGCCATATAAATGTGATTT
1 GGGCCTAATGGGCCATATCAATGTGATTT
70609638 GGGCCTAATGGGCCATATCAA-GTGATTT
1 GGGCCTAATGGGCCATATCAATGTGATTT
70609666 GGGCCTAATGGGCCATATCAA-GTGATTT
1 GGGCCTAATGGGCCATATCAATGTGATTT
* * *
70609694 GGGCCTAATTGGCCATATGAATATGA-TT
1 GGGCCTAATGGGCCATATCAATGTGATTT
*
70609722 GGGCTTAATGGGC
1 GGGCCTAATGGGC
70609735 TAGATACAGG
Statistics
Matches: 89, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
28 67 0.75
29 22 0.25
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (29 bp):
GGGCCTAATGGGCCATATCAATGTGATTT
Found at i:70612204 original size:37 final size:37
Alignment explanation
Indices: 70612099--70612211 Score: 172
Period size: 37 Copynumber: 3.0 Consensus size: 37
70612089 GCTCAGACGA
* * * * *
70612099 AATCTCCACACGAAGTTATCGGGTCTTACCCAGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGATAT
70612136 AATCTCCACACGTAGTCATCGGGTCTTACCCGGATAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGATAT
70612173 AATCTCCACACGTAGTCATCGGGTCTTACCCGGAATAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGG-ATAT
70612211 A
1 A
70612212 TTTCCAAGTT
Statistics
Matches: 70, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
37 65 0.93
38 5 0.07
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGATAT
Found at i:70617246 original size:40 final size:40
Alignment explanation
Indices: 70617172--70617390 Score: 354
Period size: 40 Copynumber: 5.5 Consensus size: 40
70617162 AACCCAAGTA
* *
70617172 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
70617211 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
70617251 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* *
70617291 CCTTCGGGGCTTAGCCCGGATATAGTCACTAGCAC-AATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* *
70617330 CCTTCGGGACTTAGCCTGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
70617370 CCTTCGGGACTTAGCCCGGAT
1 CCTTCGGGACTTAGCCCGGAT
70617391 GTCATCCGAA
Statistics
Matches: 170, Mismatches: 7, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
39 50 0.29
40 117 0.69
41 3 0.02
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:70617371 original size:79 final size:79
Alignment explanation
Indices: 70617172--70617390 Score: 352
Period size: 79 Copynumber: 2.8 Consensus size: 79
70617162 AACCCAAGTA
* *
70617172 CCTTCGGGATTTAGCCGGATATAG-CAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
70617236 TCAATAGCACAAATG
65 TCAATAGCACAAATG
* *
70617251 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATGCCTTCGGGGCTTAGCCCGGATATAG
1 CCTTCGGGACTTAG-CCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
*
70617316 TCACTAGCAC-AATG
65 TCAATAGCACAAATG
70617330 CCTTCGGGACTTAGCCTGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGAT
1 CCTTCGGGACTTAGCC-GGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGAT
70617391 GTCATCCGAA
Statistics
Matches: 130, Mismatches: 7, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
78 2 0.02
79 73 0.56
80 54 0.42
81 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.23
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
CAATAGCACAAATG
Found at i:70617383 original size:119 final size:119
Alignment explanation
Indices: 70617172--70617390 Score: 361
Period size: 119 Copynumber: 1.8 Consensus size: 119
70617162 AACCCAAGTA
* *
70617172 CCTTCGGGATTTAGCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
1 CCTTCGGGACTTAGCCGGATATAGCAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
70617237 CAATAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
66 CAATAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* *
70617291 CCTTCGGGGCTTAGCCCGGATATAGTC-ACTAGCAC-AATGCCTTCGGGACTTAGCCTGGATATA
1 CCTTCGGGACTTAG-CCGGATATAG-CAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
*
70617354 GTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGAT
64 GTCAATAGCACAAATGCCTTCGGGACTTAGCCCGGAT
70617391 GTCATCCGAA
Statistics
Matches: 93, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
119 75 0.81
120 17 0.18
121 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.23
Consensus pattern (119 bp):
CCTTCGGGACTTAGCCGGATATAGCAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
CAATAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:70625706 original size:40 final size:41
Alignment explanation
Indices: 70625662--70625840 Score: 158
Period size: 40 Copynumber: 4.4 Consensus size: 41
70625652 GCTCGATGTC
* *
70625662 TCGGGACA-TAGCCCGG-TTATAGTGATTCGCAC-AATTGCCT
1 TCGGGACATTAGCCCGGATT-TAGTAACTCGCACGAA-TGCCT
70625702 TCGGGA-ATTAGCCCGGATTTAGTAACTCGCACGAATGCCT
1 TCGGGACATTAGCCCGGATTTAGTAACTCGCACGAATGCCT
* * * *
70625742 TCGGGAC-TTAACCTGGTTTTGGTAACTCGCACGAATGCCT
1 TCGGGACATTAGCCCGGATTTAGTAACTCGCACGAATGCCT
* * * * *
70625782 TCGGG-NATT-GACCCTGATTTAGTCAACTTAGCACAAAAGCCT
1 TCGGGACATTAG-CCCGGATTTAGT-AAC-TCGCACGAATGCCT
70625824 TCGGGAC-TTAGCCCGGA
1 TCGGGACATTAGCCCGGA
70625841 CATCATTCGA
Statistics
Matches: 112, Mismatches: 17, Indels: 18
0.76 0.12 0.12
Matches are distributed among these distances:
39 1 0.01
40 80 0.71
41 7 0.06
42 23 0.21
43 1 0.01
ACGTcount: A:0.23, C:0.25, G:0.25, T:0.26
Consensus pattern (41 bp):
TCGGGACATTAGCCCGGATTTAGTAACTCGCACGAATGCCT
Found at i:70628897 original size:78 final size:80
Alignment explanation
Indices: 70628763--70628945 Score: 243
Period size: 78 Copynumber: 2.3 Consensus size: 80
70628753 TCGAATGATG
70628763 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCTAAGTGACTAATCCGGACTAAGATCCGAAGGCATTT
70628827 GTGCGAGTTACTA-AA
65 GTGCGAGTTACTATAA
* * **
70628842 TCCGGGCTAAG-CCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCTAAGTGACT-AATCCGGACTAAGAT-CCGAAGGCATT
70628904 TGTGCGAGTTACTATAA
64 TGTGCGAGTTACTATAA
*
70628921 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAG-CCCGAAGGCATTTG
70628946 AACGAGTAGC
Statistics
Matches: 93, Mismatches: 5, Indels: 11
0.85 0.05 0.10
Matches are distributed among these distances:
77 15 0.16
78 52 0.56
79 13 0.14
80 13 0.14
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCTAAGTGACTAATCCGGACTAAGATCCGAAGGCATTTG
TGCGAGTTACTATAA
Found at i:70628959 original size:40 final size:40
Alignment explanation
Indices: 70628763--70628945 Score: 252
Period size: 40 Copynumber: 4.7 Consensus size: 40
70628753 TCGAATGATG
* *
70628763 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
70628802 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
70628842 TCCGGGCTAAG--CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
70628880 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
70628921 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
70628946 AACGAGTAGC
Statistics
Matches: 131, Mismatches: 7, Indels: 11
0.88 0.05 0.07
Matches are distributed among these distances:
38 37 0.28
39 24 0.18
40 68 0.52
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:70628975 original size:78 final size:77
Alignment explanation
Indices: 70628813--70628977 Score: 219
Period size: 78 Copynumber: 2.1 Consensus size: 77
70628803 CCGGACTAAG
**
70628813 ATCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGCCGAAGGCATTTGTGCGAGTTACTA
1 ATCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGCCGAAGGCATTTGAACGAGTTACTA
70628878 AATCCGGGTTAA
66 AATCCGGGTTAA
* *
70628890 GTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATTTGAACGAG-T
1 AT-CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAG--CCGAAGGCATTTGAACGAGTT
*
70628953 AGCTATATCC-GGTTAA
62 A-CTAAATCCGGGTTAA
70628969 ATCCGAAGG
1 ATCCGAAGG
70628978 TACGTGATTC
Statistics
Matches: 77, Mismatches: 6, Indels: 9
0.84 0.07 0.10
Matches are distributed among these distances:
77 1 0.01
78 41 0.53
79 11 0.14
80 24 0.31
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (77 bp):
ATCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGCCGAAGGCATTTGAACGAGTTACTA
AATCCGGGTTAA
Found at i:70636765 original size:40 final size:40
Alignment explanation
Indices: 70636721--70636923 Score: 256
Period size: 40 Copynumber: 5.2 Consensus size: 40
70636711 TATTCGAATG
*
70636721 ATCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTTACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAT
*
70636761 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-
1 ATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAT
* *
70636800 ATCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
*
70636839 ATCC-GGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
* * **
70636878 AACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTAT
70636918 ATCCGG
1 ATCCGG
70636924 TTAAATTCCG
Statistics
Matches: 143, Mismatches: 13, Indels: 14
0.84 0.08 0.08
Matches are distributed among these distances:
38 30 0.21
39 45 0.31
40 60 0.42
41 8 0.06
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
Found at i:70638694 original size:27 final size:27
Alignment explanation
Indices: 70638662--70639190 Score: 652
Period size: 27 Copynumber: 19.6 Consensus size: 27
70638652 AAAGTACTCC
*
70638662 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
70638689 CAATTTATAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
70638716 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
70638743 TGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
70638770 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
70638797 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
70638824 C-AGTTTACAGAATTATTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
70638851 TGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
70638878 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
70638905 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
70638932 CGATTTACAGAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* **
70638959 C-AGTTTACAAAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
70638986 CGATTTATAGAATTACTGTTTTACCC-
1 CGATTTACAGAATTACCGTTTTACCCT
* * * *
70639012 CTAATTTACATAATTACCATTTTACCCC
1 C-GATTTACAGAATTACCGTTTTACCCT
* *
70639040 CGATTTACATAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
70639067 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
70639094 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
70639121 CGATTTATAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * * *
70639148 TGATTCATAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
70639175 CGATTTACAAAATTAC
1 CGATTTACAGAATTAC
70639191 TAAAATACCC
Statistics
Matches: 436, Mismatches: 58, Indels: 16
0.85 0.11 0.03
Matches are distributed among these distances:
26 4 0.01
27 428 0.98
28 4 0.01
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:70640530 original size:9 final size:9
Alignment explanation
Indices: 70640518--70640574 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
70640508 TTTGATAAAC
70640518 ATGATATGT
1 ATGATATGT
*
70640527 ATGATATGCAC
1 ATGATATG--T
*
70640538 ATGACATGT
1 ATGATATGT
*
70640547 ATGATATGCAC
1 ATGATATG--T
70640558 ATGATATGT
1 ATGATATGT
70640567 ATGATATG
1 ATGATATG
70640575 CACACGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:70640541 original size:20 final size:20
Alignment explanation
Indices: 70640516--70640578 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
70640506 ATTTTGATAA
70640516 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
70640536 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
70640556 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
70640576 ACA
1 ACA
70640579 CGAGATGTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:70640689 original size:24 final size:23
Alignment explanation
Indices: 70640633--70640799 Score: 228
Period size: 24 Copynumber: 7.0 Consensus size: 23
70640623 GAGGAAGTGA
70640633 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
70640656 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
70640679 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
70640703 CAAAAGGGCTTACGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
70640727 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
70640750 AAAAAGGGCTTTTGCCCCAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTA-T
*
70640775 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
70640799 A
1 A
70640800 TGATAAAGCA
Statistics
Matches: 130, Mismatches: 9, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
23 43 0.33
24 76 0.58
25 11 0.08
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:70640702 original size:47 final size:47
Alignment explanation
Indices: 70640633--70640799 Score: 230
Period size: 47 Copynumber: 3.5 Consensus size: 47
70640623 GAGGAAGTGA
*
70640633 AAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
* *
70640679 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTACGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
* *
70640727 TAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTA-T
*
70640775 AAAAGAGGC-TAGGCCTCCAGTTATA
1 AAAAG-GGCTTATGCC-CCAGTTATA
70640800 TGATAAAGCA
Statistics
Matches: 108, Mismatches: 8, Indels: 6
0.89 0.07 0.05
Matches are distributed among these distances:
47 65 0.60
48 31 0.29
49 12 0.11
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
Found at i:70640749 original size:71 final size:71
Alignment explanation
Indices: 70640633--70640798 Score: 262
Period size: 71 Copynumber: 2.3 Consensus size: 71
70640623 GAGGAAGTGA
* *
70640633 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
1 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
70640698 GTTATC
66 GTTATC
*
70640704 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTTGCCCCA
1 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
*
70640769 GTTATT
66 GTTATC
*
70640775 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTACGCC-CCAGTTAT
70640799 ATGATAAAGC
Statistics
Matches: 88, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
71 77 0.88
72 11 0.12
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.27
Consensus pattern (71 bp):
AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
GTTATC
Found at i:70641054 original size:31 final size:31
Alignment explanation
Indices: 70640991--70641054 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
70640981 CGTTTACAGT
* *
70640991 AAAGGCTTCGGCCCAGTAATATTAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
70641022 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
70641053 AA
1 AA
70641055 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:70642392 original size:27 final size:28
Alignment explanation
Indices: 70642351--70642669 Score: 314
Period size: 27 Copynumber: 12.0 Consensus size: 28
70642341 AAACATACAT
* * **
70642351 CACATAGGGGTAAAA-CAGTCATCCTAC
1 CACATAAGGGCAAAATCAGTCATTTTAC
70642378 CACATAAGGGCAAAAT-AGTCATTTTAC
1 CACATAAGGGCAAAATCAGTCATTTTAC
* *
70642405 CTCATAAGGGTAAAATC-GTCATTTTAC
1 CACATAAGGGCAAAATCAGTCATTTTAC
70642432 CACATAA-GGCAAAA-CAG----TTT-C
1 CACATAAGGGCAAAATCAGTCATTTTAC
* * *
70642453 CATATAAGGG-AAAATCTGTCATTTTAT
1 CACATAAGGGCAAAATCAGTCATTTTAC
* *
70642480 CACATATGGGCAAAATCA-TCATTTTAA
1 CACATAAGGGCAAAATCAGTCATTTTAC
* * *
70642507 CATATAAGGGTAAAATC-GTCATTTTAA
1 CACATAAGGGCAAAATCAGTCATTTTAC
* *
70642534 CACATAAAGGCAAAAT-AGTCATTTTTC
1 CACATAAGGGCAAAATCAGTCATTTTAC
* * * *
70642561 AACATAAGGGAAAAAT-TGTCATTTTAT
1 CACATAAGGGCAAAATCAGTCATTTTAC
*
70642588 CACATAAGGGCAAAATC-GTCATTTTAA
1 CACATAAGGGCAAAATCAGTCATTTTAC
*
70642615 CACATAAGGGCAAAATCA-TCATTTTAA
1 CACATAAGGGCAAAATCAGTCATTTTAC
70642642 CACATAAGGGCAAAAT-AGTCATTTTAC
1 CACATAAGGGCAAAATCAGTCATTTTAC
70642669 C
1 C
70642670 TTACAGAGGT
Statistics
Matches: 243, Mismatches: 33, Indels: 32
0.79 0.11 0.10
Matches are distributed among these distances:
21 11 0.05
22 7 0.03
25 1 0.00
26 11 0.05
27 207 0.85
28 6 0.02
ACGTcount: A:0.40, C:0.18, G:0.14, T:0.28
Consensus pattern (28 bp):
CACATAAGGGCAAAATCAGTCATTTTAC
Found at i:70642604 original size:108 final size:108
Alignment explanation
Indices: 70642378--70642666 Score: 389
Period size: 108 Copynumber: 2.7 Consensus size: 108
70642368 GTCATCCTAC
* *
70642378 CACATAAGGGCAAAAT-AGTCATTTT-ACCTCATAAGGGTAAAATCGTCATTTTACCACAT-AAG
1 CACATAAGGGCAAAATCA-TCATTTTAACAT-ATAAGGGTAAAATCGTCATTTTAACACATAAAG
* * *
70642440 GC-AAA-A--CA-GTTTCCATATAAGGGAAAATCTGTCATTTTAT
64 GCAAAATAGTCATTTTTCAACATAAGGGAAAATCTGTCATTTTAT
*
70642480 CACATATGGGCAAAATCATCATTTTAACATATAAGGGTAAAATCGTCATTTTAACACATAAAGGC
1 CACATAAGGGCAAAATCATCATTTTAACATATAAGGGTAAAATCGTCATTTTAACACATAAAGGC
70642545 AAAATAGTCATTTTTCAACATAAGGGAAAAAT-TGTCATTTTAT
66 AAAATAGTCATTTTTCAACATAAGGG-AAAATCTGTCATTTTAT
* * * * *
70642588 CACATAAGGGCAAAATCGTCATTTTAACACATAAGGGCAAAATCATCATTTTAACACATAAGGGC
1 CACATAAGGGCAAAATCATCATTTTAACATATAAGGGTAAAATCGTCATTTTAACACATAAAGGC
70642653 AAAATAGTCATTTT
66 AAAATAGTCATTTT
70642667 ACCTTACAGA
Statistics
Matches: 166, Mismatches: 12, Indels: 12
0.87 0.06 0.06
Matches are distributed among these distances:
102 50 0.30
103 9 0.05
104 3 0.02
105 1 0.01
107 2 0.01
108 96 0.58
109 5 0.03
ACGTcount: A:0.40, C:0.16, G:0.14, T:0.29
Consensus pattern (108 bp):
CACATAAGGGCAAAATCATCATTTTAACATATAAGGGTAAAATCGTCATTTTAACACATAAAGGC
AAAATAGTCATTTTTCAACATAAGGGAAAATCTGTCATTTTAT
Found at i:70643905 original size:28 final size:29
Alignment explanation
Indices: 70643868--70643933 Score: 89
Period size: 28 Copynumber: 2.3 Consensus size: 29
70643858 AAGTCTACAT
*
70643868 ACATGCATATGGCCCACTACGCCC-AATC
1 ACATTCATATGGCCCACTACGCCCAAATC
* * *
70643896 TCATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCACTACGCCCAAATC
70643925 ACATTCATA
1 ACATTCATA
70643934 GTAATGCTTT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
28 20 0.62
29 12 0.38
ACGTcount: A:0.30, C:0.33, G:0.12, T:0.24
Consensus pattern (29 bp):
ACATTCATATGGCCCACTACGCCCAAATC
Found at i:70644164 original size:16 final size:16
Alignment explanation
Indices: 70644145--70644179 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
70644135 GTAGCCAAAG
* *
70644145 TTTTGGCTTTTTGGCA
1 TTTTGACTTTTCGGCA
70644161 TTTTGACTTTTCGGCA
1 TTTTGACTTTTCGGCA
70644177 TTT
1 TTT
70644180 CGGGATTTGC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.09, C:0.14, G:0.20, T:0.57
Consensus pattern (16 bp):
TTTTGACTTTTCGGCA
Found at i:70645193 original size:24 final size:24
Alignment explanation
Indices: 70645165--70645249 Score: 127
Period size: 24 Copynumber: 3.5 Consensus size: 24
70645155 CCTTGTCATG
* *
70645165 CATGTGATGCCACCT-TGGGCCCCA
1 CATGTGACGCCACATCT-GGCCCCA
*
70645189 CATGTGATGCCACATCTGGCCCCA
1 CATGTGACGCCACATCTGGCCCCA
70645213 CATGTGACGCCACATCTGGCCCCA
1 CATGTGACGCCACATCTGGCCCCA
70645237 CATGTGACGCCAC
1 CATGTGACGCCAC
70645250 TTGCCACTCC
Statistics
Matches: 58, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
24 57 0.98
25 1 0.02
ACGTcount: A:0.20, C:0.39, G:0.22, T:0.19
Consensus pattern (24 bp):
CATGTGACGCCACATCTGGCCCCA
Found at i:70645201 original size:12 final size:12
Alignment explanation
Indices: 70645186--70645249 Score: 65
Period size: 12 Copynumber: 5.3 Consensus size: 12
70645176 ACCTTGGGCC
*
70645186 CCACATGTGATG
1 CCACATGTGACG
* * *
70645198 CCACATCTGGCC
1 CCACATGTGACG
70645210 CCACATGTGACG
1 CCACATGTGACG
* * *
70645222 CCACATCTGGCC
1 CCACATGTGACG
70645234 CCACATGTGACG
1 CCACATGTGACG
70645246 CCAC
1 CCAC
70645250 TTGCCACTCC
Statistics
Matches: 39, Mismatches: 13, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
12 39 1.00
ACGTcount: A:0.22, C:0.41, G:0.20, T:0.17
Consensus pattern (12 bp):
CCACATGTGACG
Found at i:70645550 original size:27 final size:27
Alignment explanation
Indices: 70645483--70645539 Score: 105
Period size: 27 Copynumber: 2.1 Consensus size: 27
70645473 GGGCGTTACA
70645483 ATTACAGTCATTTTACCCTATAGGGGT
1 ATTACAGTCATTTTACCCTATAGGGGT
*
70645510 ATTACAGTCATTTTACCCTATGGGGGT
1 ATTACAGTCATTTTACCCTATAGGGGT
70645537 ATT
1 ATT
70645540 TCGGTTATTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.25, C:0.18, G:0.19, T:0.39
Consensus pattern (27 bp):
ATTACAGTCATTTTACCCTATAGGGGT
Found at i:70645972 original size:24 final size:24
Alignment explanation
Indices: 70645940--70645985 Score: 76
Period size: 24 Copynumber: 1.9 Consensus size: 24
70645930 TCGACAACCC
70645940 ACTTTTCGGCTT-TTCAGCCTTTCA
1 ACTTTTCGGCTTGTT-AGCCTTTCA
70645964 ACTTTTCGGCTTGTTAGCCTTT
1 ACTTTTCGGCTTGTTAGCCTTT
70645986 GCAGTTTCAC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
24 19 0.90
25 2 0.10
ACGTcount: A:0.11, C:0.26, G:0.15, T:0.48
Consensus pattern (24 bp):
ACTTTTCGGCTTGTTAGCCTTTCA
Found at i:70650335 original size:13 final size:13
Alignment explanation
Indices: 70650317--70650345 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
70650307 AAAAATGGTT
70650317 ATATGTGAGTTTA
1 ATATGTGAGTTTA
70650330 ATATGTGAGTTTA
1 ATATGTGAGTTTA
70650343 ATA
1 ATA
70650346 AAATTGTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.34, C:0.00, G:0.21, T:0.45
Consensus pattern (13 bp):
ATATGTGAGTTTA
Found at i:70656118 original size:40 final size:39
Alignment explanation
Indices: 70656073--70656202 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
70656063 CGGAATACAA
70656073 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* *
70656113 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* ** *
70656153 CCGGATGTAGTCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACGAA-TGCCTTCGGGTCTTAGC
70656193 CCGGATATAA
1 CCGGATATAA
70656203 TTTCCAGCAT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.24
Consensus pattern (39 bp):
CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
Found at i:70656223 original size:40 final size:40
Alignment explanation
Indices: 70656073--70656240 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
70656063 CGGAATACAA
* ** *
70656073 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCACAAATGCCTTCGGGTCTTAGC
* ** *
70656113 CCGGATAGAA-CGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATC-ACCAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
70656153 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAAATGCCTTCGGGTCTTAGC
** * * *
70656193 CCGGATATAATTTCCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAATCACCAGCACAAATGCCTTCGGGTCTTAGC
70656233 CCGGATAT
1 CCGGATAT
70656241 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
39 1 0.01
40 105 0.98
41 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAAATGCCTTCGGGTCTTAGC
Found at i:70658461 original size:56 final size:56
Alignment explanation
Indices: 70658302--70658474 Score: 235
Period size: 56 Copynumber: 3.1 Consensus size: 56
70658292 CATGACATAG
* *
70658302 GATTCTGATATGTGATGTGCGAGTAAGACCACGTTTAATACGTTGGCATCAATATGT
1 GATTCTGATATAT-ATGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGT
70658359 GATT-TCGATATATATGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGT
1 GATTCT-GATATATATGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGT
* * **
70658415 GATTCTGATATATTTGTGCGAGTAAGACC-CTGTCTAGGACAG-TGGCATCGATATGT
1 GATTCTGATATATATGTGCGAGTAAGACCAC-GTTTAATAC-GTTGGCATCGATATGT
70658471 GATT
1 GATT
70658475 ACATGTAAGA
Statistics
Matches: 106, Mismatches: 6, Indels: 9
0.88 0.05 0.07
Matches are distributed among these distances:
55 1 0.01
56 93 0.88
57 12 0.11
ACGTcount: A:0.27, C:0.14, G:0.25, T:0.34
Consensus pattern (56 bp):
GATTCTGATATATATGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGT
Found at i:70666514 original size:40 final size:40
Alignment explanation
Indices: 70666417--70666602 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
70666407 TCGAATGATG
* ** *
70666417 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGAGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
70666457 TCTGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
70666497 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
70666537 TCCGGGTTAAGTCCCGAAGGCATTTGTGAGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* * *
70666578 -CCGGGCTATGTCTCGAAGACATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
70666603 AACGAGTAGC
Statistics
Matches: 128, Mismatches: 14, Indels: 8
0.85 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 117 0.91
41 10 0.08
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:70666609 original size:80 final size:79
Alignment explanation
Indices: 70666470--70666625 Score: 199
Period size: 80 Copynumber: 2.0 Consensus size: 79
70666460 GGACTAAGAT
* * * **
70666470 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
1 CCGAAGGCATTTGTGAGAGTTACTAAATCCGGGCTAAGTCCCGAAGACATTTGAACGAG-TAGCT
70666534 AAATCCGGGTTAAGTC
65 AAATCC-GGTTAAGTC
* *
70666550 CCGAAGGCATTTGTGAGAGTTACTATAA-CCGGGCTATGTCTCGAAGACATTTGAACGAGTAGCT
1 CCGAAGGCATTTGTGAGAGTTACTA-AATCCGGGCTAAGTCCCGAAGACATTTGAACGAGTAGCT
*
70666614 ATATCCGGTTAA
65 AAATCCGGTTAA
70666626 ACTCCGAAGG
Statistics
Matches: 66, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
79 8 0.12
80 56 0.85
81 2 0.03
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (79 bp):
CCGAAGGCATTTGTGAGAGTTACTAAATCCGGGCTAAGTCCCGAAGACATTTGAACGAGTAGCTA
AATCCGGTTAAGTC
Found at i:70673131 original size:78 final size:82
Alignment explanation
Indices: 70672996--70673179 Score: 256
Period size: 78 Copynumber: 2.3 Consensus size: 82
70672986 TCGAATGATG
*
70672996 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
70673060 TGTGCGAGTTACTA-AA
66 TGTGCGAGTTACTATAA
* * **
70673076 TCCGGG-TAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCAT
70673137 TTGTGCGAGTTACTATAA
65 TTGTGCGAGTTACTATAA
*
70673155 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
70673180 AACGAGTAGC
Statistics
Matches: 93, Mismatches: 6, Indels: 10
0.85 0.06 0.09
Matches are distributed among these distances:
77 1 0.01
78 55 0.59
79 18 0.19
80 19 0.20
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATAA
Found at i:70673186 original size:40 final size:40
Alignment explanation
Indices: 70672996--70673179 Score: 252
Period size: 40 Copynumber: 4.7 Consensus size: 40
70672986 TCGAATGATG
* * *
70672996 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
70673036 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
70673076 TCCGGG-TAAGT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
70673114 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
70673155 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
70673180 AACGAGTAGC
Statistics
Matches: 132, Mismatches: 7, Indels: 10
0.89 0.05 0.07
Matches are distributed among these distances:
38 34 0.26
39 9 0.07
40 79 0.60
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:70681447 original size:40 final size:40
Alignment explanation
Indices: 70681215--70681440 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
70681205 TCGAATGATG
* * * * *
70681215 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGTTAAGTCCCGAAGACATTTGTGC-GAGTTACTAAA
** *
70681255 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAG-TCCCGAAGACATTTGTGCGAGTTACTAAA
* *
70681295 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGTTAAGTCCCGAAGACATTTGTGCGAGTTACTAAA
*
70681335 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGACATTTGTGCGAGTTACTAAA
70681375 TCCGGGTTAAGTCCCGAAGACATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGACATTTGTGCGAGTTACTA-AA
* * *
70681416 -CCGGGCTATGTCCCAAAGACATTTG
1 TCCGGGTTAAGTCCCGAAGACATTTG
70681441 AACGAGTAGC
Statistics
Matches: 170, Mismatches: 12, Indels: 8
0.89 0.06 0.04
Matches are distributed among these distances:
39 1 0.01
40 159 0.94
41 10 0.06
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGACATTTGTGCGAGTTACTAAA
Found at i:70681459 original size:80 final size:80
Alignment explanation
Indices: 70681215--70681440 Score: 314
Period size: 80 Copynumber: 2.8 Consensus size: 80
70681205 TCGAATGATG
* * * *
70681215 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGCTAAG-TCCCGAAGGCAT
70681278 TTGTGCGAGTTACTAAA
64 TTGTGCGAGTTACTAAA
*
70681295 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATTCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCCCGAAGGCATT
70681359 TGTGCGAGTTACTAAA
65 TGTGCGAGTTACTAAA
* * * * *
70681375 TCCGGGTTAAGTCCCGAAGACATTTGTGCGAGTTACTATAACCGGGCTATGTCCCAAAGACATTT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTT
70681440 G
66 G
70681441 AACGAGTAGC
Statistics
Matches: 131, Mismatches: 11, Indels: 8
0.87 0.07 0.05
Matches are distributed among these distances:
79 2 0.02
80 121 0.92
81 8 0.06
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.27
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGTTACTAAA
Found at i:70693755 original size:40 final size:40
Alignment explanation
Indices: 70693667--70693763 Score: 108
Period size: 40 Copynumber: 2.4 Consensus size: 40
70693657 CTATCTCGGT
70693667 ATCGCACACTTAGTGCCTCATATAGCCAAAGTTATTCCAA
1 ATCGCACACTTAGTGCCTCATATAGCCAAAGTTATTCCAA
* * **
70693707 TTCGCACACTTAGTG-CT-ATTTATAGCCGAAGTTATTTTAA
1 ATCGCACACTTAGTGCCTCA--TATAGCCAAAGTTATTCCAA
* *
70693747 ATCTCACACTTAATGCC
1 ATCGCACACTTAGTGCC
70693764 GAACATAGTC
Statistics
Matches: 47, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
38 1 0.02
39 2 0.04
40 43 0.91
41 1 0.02
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (40 bp):
ATCGCACACTTAGTGCCTCATATAGCCAAAGTTATTCCAA
Found at i:70694581 original size:8 final size:8
Alignment explanation
Indices: 70694568--70694593 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
70694558 ACATTAATGC
70694568 CCATTTTA
1 CCATTTTA
70694576 CCATTTTA
1 CCATTTTA
70694584 CCATTTTA
1 CCATTTTA
70694592 CC
1 CC
70694594 CTTAAATCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.23, C:0.31, G:0.00, T:0.46
Consensus pattern (8 bp):
CCATTTTA
Found at i:70702444 original size:28 final size:29
Alignment explanation
Indices: 70702412--70702526 Score: 128
Period size: 29 Copynumber: 4.0 Consensus size: 29
70702402 GACCTGCATC
* * *
70702412 TGGCCCATTAAGCCC-ATTCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
*
70702440 TGGCCCATTAGGCCCAAATCACCTGT-ATA
1 TGGCCCATTAGGCCCAAATCACAT-TCATA
*
70702469 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
* * *
70702498 TGGCCCGTTAGGACC-AGTCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
70702526 T
1 T
70702527 TCATGCTCAC
Statistics
Matches: 75, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
28 27 0.36
29 47 0.63
30 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.28
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTCATA
Found at i:70702607 original size:17 final size:18
Alignment explanation
Indices: 70702585--70702618 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
70702575 TCCCTATTAT
70702585 GGGCCCA-ATAGCCCATC
1 GGGCCCATATAGCCCATC
*
70702602 GGGCCCATTTAGCCCAT
1 GGGCCCATATAGCCCAT
70702619 TCTGGCCTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.21, C:0.38, G:0.24, T:0.18
Consensus pattern (18 bp):
GGGCCCATATAGCCCATC
Found at i:70705889 original size:79 final size:80
Alignment explanation
Indices: 70705789--70705973 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 80
70705779 GCTACTCGTT
* *
70705789 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAA-GCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
*
70705852 GAATTTAGTGACTCGTA-C-
63 GAATTTAGTCACT--TAGCA
* ** *
70705870 CAAAGCCTTCGGG-CTTAGCCCAGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGAA
70705934 TTTAGTCACTTAGCA
66 TTTAGTCACTTAGCA
70705949 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
70705974 CATCATTCGA
Statistics
Matches: 91, Mismatches: 8, Indels: 11
0.83 0.07 0.10
Matches are distributed among these distances:
77 2 0.02
78 4 0.04
79 61 0.67
80 20 0.22
81 4 0.04
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGAA
TTTAGTCACTTAGCA
Found at i:70705973 original size:40 final size:40
Alignment explanation
Indices: 70705789--70705973 Score: 191
Period size: 40 Copynumber: 4.7 Consensus size: 40
70705779 GCTACTCGTT
* *
70705789 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTAGCA
* * * * *
70705829 CAAATGCCTTCGGGACTTAACCCGAATTTAGTGACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTAGCA
* * *
70705869 CCAAA-GCCTTCGGG-CTTAGCCCAGAATTAGTAACTCGCA
1 -CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTAGCA
* *
70705908 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TAGCA
70705949 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
70705974 CATCATTCGA
Statistics
Matches: 121, Mismatches: 17, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
38 6 0.05
39 25 0.21
40 73 0.60
41 17 0.14
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTAGCA
Found at i:70711153 original size:31 final size:31
Alignment explanation
Indices: 70711112--70711175 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
70711102 CCTTTTCATA
*
70711112 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
70711143 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
70711174 TT
1 TT
70711176 ACGGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:70711444 original size:47 final size:48
Alignment explanation
Indices: 70711367--70711532 Score: 232
Period size: 47 Copynumber: 3.5 Consensus size: 48
70711357 TGCTTTATCA
* *
70711367 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTT
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTT
*
70711416 TATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCGTAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
* *
70711463 GATAACT-GGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC-TTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
*
70711509 AATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTT
70711533 TCACTTCCTC
Statistics
Matches: 107, Mismatches: 7, Indels: 8
0.88 0.06 0.07
Matches are distributed among these distances:
46 21 0.20
47 68 0.64
48 5 0.05
49 13 0.12
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.30
Consensus pattern (48 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
Found at i:70711447 original size:23 final size:24
Alignment explanation
Indices: 70711368--70711532 Score: 230
Period size: 23 Copynumber: 7.0 Consensus size: 24
70711358 GCTTTATCAT
*
70711368 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
70711393 ATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
70711417 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
70711440 ATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
70711464 ATAACT-GGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
70711487 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
70711510 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
70711533 TCACTTCCTC
Statistics
Matches: 127, Mismatches: 9, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
23 65 0.51
24 50 0.39
25 12 0.09
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:70711484 original size:70 final size:71
Alignment explanation
Indices: 70711368--70711532 Score: 253
Period size: 70 Copynumber: 2.3 Consensus size: 71
70711358 GCTTTATCAT
* *
70711368 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATAA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAA
70711432 GCCCTTTA
64 GCCCTTTA
* * *
70711440 ATAACTGGGGCGTAAGCCCTTTTGATAACT-GGGCATAAGCCCTTTTGATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGC
70711504 CCTTTA
66 CCTTTA
70711510 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
70711533 TCACTTCCTC
Statistics
Matches: 87, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
70 60 0.69
71 15 0.17
72 12 0.14
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (71 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGC
CCTTTA
Found at i:70711605 original size:9 final size:9
Alignment explanation
Indices: 70711591--70711647 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
70711581 ATCTCGTGTG
70711591 CATATCATA
1 CATATCATA
*
70711600 CATATCATGTG
1 CATATCA--TA
70711611 CATATCATA
1 CATATCATA
* *
70711620 CATGTCATGTG
1 CATATCA--TA
70711631 CATATCATA
1 CATATCATA
70711640 CATATCAT
1 CATATCAT
70711648 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:70711610 original size:20 final size:20
Alignment explanation
Indices: 70711587--70711649 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
70711577 GAACATCTCG
70711587 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
70711607 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
70711627 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
70711647 TGT
1 TGT
70711650 TTATCAAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:70711714 original size:25 final size:25
Alignment explanation
Indices: 70711686--70711733 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
70711676 ATATATAAAC
* * *
70711686 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
70711711 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
70711734 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:70712997 original size:27 final size:27
Alignment explanation
Indices: 70712968--70713304 Score: 468
Period size: 27 Copynumber: 12.6 Consensus size: 27
70712958 GGGTATTTTA
* *
70712968 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
70712995 GTAATTCTGTAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
70713022 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
70713049 GTAATTCTGTAAATCGAGGGTAAAAC-
1 GTAATTCTGTAAATCGAGGGTAAAACG
70713075 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
70713102 ATAATTATGTAAATCG-GGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
70713128 GTAATTATGTAAATTG-GGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
**
70713154 GTAATTCTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
70713181 GTAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
70713208 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* **
70713235 GTAATTTTACAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
70713262 GTAATTCTAT-AACCTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
70713289 GTAATTCTGTAAATCG
1 GTAATTCTGTAAATCG
70713305 GGAGTACTTT
Statistics
Matches: 278, Mismatches: 26, Indels: 12
0.88 0.08 0.04
Matches are distributed among these distances:
26 78 0.28
27 196 0.71
28 4 0.01
ACGTcount: A:0.39, C:0.10, G:0.23, T:0.28
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:70713254 original size:186 final size:187
Alignment explanation
Indices: 70712968--70713306 Score: 522
Period size: 186 Copynumber: 1.8 Consensus size: 187
70712958 GGGTATTTTA
*
70712968 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATA
1 GTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATA
* ** * *
70713033 AATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAAC-GTAATTCTGTAA-ATCGAGGGT
66 AATCGAGGGTAAAACGGTAATTCTACAAATCGAGGGTAAAACGGTAATTCTATAACCT-GAGGGT
70713096 AAAACGATAATTATGTAAATCGGGGTAAAACGGTAATTATGTAAATTGGGGTAAAACG
130 AAAACGATAATTATGTAAATCGGGGTAAAACGGTAATTATGTAAATTGGGGTAAAACG
* * * *
70713154 GTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAA-CTGAGGGTAAAACGGTAATTCTGT
1 GTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATC-AAGGGTAAAACAGTAATTCTAT
*
70713218 AAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTATAACCTGAGGGT
65 AAATCGAGGGTAAAACGGTAATTCTACAAATCGAGGGTAAAACGGTAATTCTATAACCTGAGGGT
* *
70713283 AAAACGGTAATTCTGTAAATCGGG
130 AAAACGATAATTATGTAAATCGGG
70713307 AGTACTTTGG
Statistics
Matches: 137, Mismatches: 13, Indels: 5
0.88 0.08 0.03
Matches are distributed among these distances:
185 1 0.01
186 96 0.70
187 39 0.28
188 1 0.01
ACGTcount: A:0.39, C:0.10, G:0.24, T:0.28
Consensus pattern (187 bp):
GTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATA
AATCGAGGGTAAAACGGTAATTCTACAAATCGAGGGTAAAACGGTAATTCTATAACCTGAGGGTA
AAACGATAATTATGTAAATCGGGGTAAAACGGTAATTATGTAAATTGGGGTAAAACG
Found at i:70716107 original size:30 final size:31
Alignment explanation
Indices: 70716067--70716129 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 31
70716057 CCTTTTCATA
70716067 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
70716098 TTTCA-ATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
70716128 TT
1 TT
70716130 ACGGTAAACG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 25 0.83
31 5 0.17
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.37
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:70716459 original size:94 final size:95
Alignment explanation
Indices: 70716321--70716508 Score: 292
Period size: 94 Copynumber: 2.0 Consensus size: 95
70716311 GCTTTATCAT
* *
70716321 ATAACTGGAGGCCTAGCCTCTTTTAAAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATAAGC
1 ATAACTGGAGGCATAGCCTCTTTTAAAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGC
*
70716386 CCTTTAATAA-TGGGGCGTAAGCCCTTTTG
66 CCTTTAATAACTGGGGCATAAGCCCTTTTG
* *
70716415 ATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAA
1 ATAACTGGAGGCAT-AGCCTCTTTT-AAAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAA
70716478 GCCCTTTAATAACTGGGGCATAAGCCCTTTT
64 GCCCTTTAATAACTGGGGCATAAGCCCTTTT
70716509 TCACTTCCTC
Statistics
Matches: 86, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
93 9 0.10
94 60 0.70
95 17 0.20
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (95 bp):
ATAACTGGAGGCATAGCCTCTTTTAAAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGC
CCTTTAATAACTGGGGCATAAGCCCTTTTG
Found at i:70716493 original size:23 final size:24
Alignment explanation
Indices: 70716321--70716508 Score: 260
Period size: 24 Copynumber: 8.0 Consensus size: 24
70716311 GCTTTATCAT
*
70716321 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
70716346 A-AACTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
70716369 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
70716392 ATAA-TGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
70716415 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
70716439 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
70716463 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
70716486 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
70716509 TCACTTCCTC
Statistics
Matches: 149, Mismatches: 9, Indels: 11
0.88 0.05 0.07
Matches are distributed among these distances:
22 13 0.09
23 45 0.30
24 90 0.60
25 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:70716585 original size:20 final size:20
Alignment explanation
Indices: 70716562--70716624 Score: 108
Period size: 20 Copynumber: 3.1 Consensus size: 20
70716552 GAACATCTCG
70716562 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
* *
70716582 TGTGCATATCATATATGTCA
1 TGTGCATATCATACATATCA
70716602 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
70716622 TGT
1 TGT
70716625 TTATCAAAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.32, C:0.17, G:0.13, T:0.38
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:70716702 original size:24 final size:24
Alignment explanation
Indices: 70716661--70716707 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
70716651 ATATATAAAC
* * *
70716661 CCTAGGGGTATAATGGTCATTTTA
1 CCTAGGGGCAAAACGGTCATTTTA
70716685 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
70716708 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.32
Consensus pattern (24 bp):
CCTAGGGGCAAAACGGTCATTTTA
Found at i:70717962 original size:27 final size:27
Alignment explanation
Indices: 70717942--70718282 Score: 420
Period size: 27 Copynumber: 12.6 Consensus size: 27
70717932 AGGGTATTTT
*
70717942 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
70717969 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
70717996 AGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
70718023 GGTAATTCTGTAAATTGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
70718050 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
70718077 -GATAATTATGTAAATCGGGGGTAAAAC
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* * *
70718104 AGTAATTATGTAAATTGGGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
70718131 GGTAATTCTGTAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
70718158 AGTAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
70718185 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * **
70718212 GGTAATTTTACAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
70718239 -GATAATTCTAT-AACCTGAGGGTAAAAC
1 AG-TAATTCTGTAAATC-GAGGGTAAAAC
*
70718266 GGTAATTCTGTAAATCG
1 AGTAATTCTGTAAATCG
70718283 GGAGTACTTT
Statistics
Matches: 277, Mismatches: 29, Indels: 16
0.86 0.09 0.05
Matches are distributed among these distances:
26 6 0.02
27 265 0.96
28 6 0.02
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:70719495 original size:2 final size:2
Alignment explanation
Indices: 70719488--70719517 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
70719478 AAGTTTATTG
*
70719488 AT AT AT AT AT AT AT AT AT AT AT AT AA AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
70719518 GTGTTAAAGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:70723728 original size:29 final size:29
Alignment explanation
Indices: 70723665--70723730 Score: 98
Period size: 29 Copynumber: 2.3 Consensus size: 29
70723655 ACTCATATTC
*
70723665 ATAT-GCCCATTAGGCCCAAATCACCTAT
1 ATATGGCCCATTAGGCCCAAATCACATAT
* *
70723693 ATGTGGCCCATTAGGCCCAAATCACATTT
1 ATATGGCCCATTAGGCCCAAATCACATAT
70723722 ATATGGCCC
1 ATATGGCCC
70723731 CATTTATATG
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
28 3 0.09
29 30 0.91
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.26
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACATAT
Found at i:70723736 original size:14 final size:14
Alignment explanation
Indices: 70723717--70723744 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
70723707 GCCCAAATCA
70723717 CATTTATATGGCCC
1 CATTTATATGGCCC
70723731 CATTTATATGGCCC
1 CATTTATATGGCCC
70723745 GTTAGGCCCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.29, G:0.14, T:0.36
Consensus pattern (14 bp):
CATTTATATGGCCC
Found at i:70724002 original size:16 final size:16
Alignment explanation
Indices: 70723978--70724012 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
70723968 GTAGCCAAAC
*
70723978 TTTCGACTTTTCAGCA
1 TTTCAACTTTTCAGCA
*
70723994 TTTCAACTTTTCGGCA
1 TTTCAACTTTTCAGCA
70724010 TTT
1 TTT
70724013 TGGCATTTCG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.17, C:0.23, G:0.11, T:0.49
Consensus pattern (16 bp):
TTTCAACTTTTCAGCA
Found at i:70726789 original size:49 final size:49
Alignment explanation
Indices: 70726717--70726904 Score: 250
Period size: 49 Copynumber: 3.8 Consensus size: 49
70726707 TGAGGTCACG
*
70726717 TGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
* * * * * * *
70726766 TGTGTAGTACTAAGTGTAGGCTACTATGTGTACCCGAAAACTATGATCACT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-T-TGGTCGCA
* *
70726817 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
* *
70726866 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
70726905 GCTTCGGCTA
Statistics
Matches: 116, Mismatches: 21, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
49 75 0.65
50 2 0.02
51 39 0.34
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
Found at i:70726890 original size:100 final size:100
Alignment explanation
Indices: 70726712--70726899 Score: 322
Period size: 100 Copynumber: 1.9 Consensus size: 100
70726702 TATTGTGAGG
*
70726712 TCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAAGCTACTACATGTACCAGATAATTGGTCGCATGTGTAGTACT
* *
70726777 AAGTGTAGGCTACTATGTGTACCCGAAAACTATGA
66 AAGTGCAGGCTACTATGCGTACCCGAAAACTATGA
* * *
70726812 TCACTTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAAGCTACTACATGTACCAGATAATTGGTCGCATGTGTAGTACT
70726877 AAGTGCAGGCTACTATGCGTACC
66 AAGTGCAGGCTACTATGCGTACC
70726900 AGATAGCTTC
Statistics
Matches: 82, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
100 82 1.00
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAAGCTACTACATGTACCAGATAATTGGTCGCATGTGTAGTACT
AAGTGCAGGCTACTATGCGTACCCGAAAACTATGA
Found at i:70731715 original size:22 final size:22
Alignment explanation
Indices: 70731673--70731716 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
70731663 AATTATTTAC
* *
70731673 GACTAAAGTATAGCGTTCATAT
1 GACTAAAGAATAGCGTGCATAT
70731695 GACTAAATGAATAGC-TGCATAT
1 GACTAAA-GAATAGCGTGCATAT
70731717 ACGCATATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.30
Consensus pattern (22 bp):
GACTAAAGAATAGCGTGCATAT
Found at i:70732017 original size:40 final size:40
Alignment explanation
Indices: 70731943--70732163 Score: 313
Period size: 40 Copynumber: 5.6 Consensus size: 40
70731933 AACCCAAGTA
* *
70731943 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
* *
70731982 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* * * *
70732022 CTTTCGGGACTTAGCTCGGATATAGTCACTGGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
70732062 CCTTCGGGACTTAGCCCGGATATAGACAATAGCAC-AATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* *
70732101 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
70732141 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
70732164 CATTCGAATA
Statistics
Matches: 161, Mismatches: 18, Indels: 5
0.88 0.10 0.03
Matches are distributed among these distances:
39 49 0.30
40 109 0.68
41 3 0.02
ACGTcount: A:0.28, C:0.26, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:70732149 original size:79 final size:80
Alignment explanation
Indices: 70731943--70732163 Score: 331
Period size: 79 Copynumber: 2.8 Consensus size: 80
70731933 AACCCAAGTA
* * *
70731943 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
*
70732006 GTCAATAGCACAAAAG
65 GACAATAGCACAAAAG
* * *
70732022 CTTTCGGGACTTAGCTCGGATATAGTCACTGGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
*
70732087 ACAATAGCAC-AATG
66 ACAATAGCACAAAAG
*
70732101 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAGCCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
70732164 CATTCGAATA
Statistics
Matches: 129, Mismatches: 11, Indels: 4
0.90 0.08 0.03
Matches are distributed among these distances:
79 74 0.57
80 54 0.42
81 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.24, T:0.23
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
ACAATAGCACAAAAG
Found at i:70732154 original size:119 final size:119
Alignment explanation
Indices: 70731943--70732163 Score: 356
Period size: 119 Copynumber: 1.9 Consensus size: 119
70731933 AACCCAAGTA
* * *
70731943 CCTTCGGGATTTAGCCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
1 CCTTCGGGACTTAGCCGGATATAGCAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
* *
70732008 CAATAGCACAAAAGCTTTCGGGACTTAGCTCGGATATAGTCACTGGCACAAATG
66 CAATAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAGTCACTGGCACAAATG
70732062 CCTTCGGGACTTAGCCCGGATATAGACAA-TAGCAC-AATGCCTTCGGGACTTAGCCCGGATATA
1 CCTTCGGGACTTAG-CCGGATATAG-CAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
*
70732125 GTCACTAGCACAAAAGCCTTCGGGACTTAGCCCGGATAT
64 GTCAATAGCACAAAAGCCTTCGGGACTTAGCCCGGATAT
70732164 CATTCGAATA
Statistics
Matches: 94, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
119 76 0.81
120 15 0.16
121 3 0.03
ACGTcount: A:0.28, C:0.26, G:0.24, T:0.23
Consensus pattern (119 bp):
CCTTCGGGACTTAGCCGGATATAGCAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
CAATAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAGTCACTGGCACAAATG
Found at i:70740557 original size:96 final size:96
Alignment explanation
Indices: 70740393--70740573 Score: 238
Period size: 96 Copynumber: 1.9 Consensus size: 96
70740383 TAGGGTTATG
* *
70740393 TGTGATCCCATGTAAGACCATATCTGGGATATGGAATTGGCATCAATATGTGATCCCATGTAAGA
1 TGTGATCCCATGTAAGACCATATCTAGGATATGGAATTGGCATCAATATGTGATCCCATGTAAAA
*
70740458 CCATATCTAGGATATGGCATTGCCATCGATA
66 CCATATCTAGGACATGGCATTGCCATCGATA
* * * ****
70740489 TGTGATCCCATGTAAGACCATCT-TCAGGATATGGCATTGGCATCGATATGTGATTTTGTGTAAA
1 TGTGATCCCATGTAAGACCATATCT-AGGATATGGAATTGGCATCAATATGTGATCCCATGTAAA
* *
70740553 ACCATGTCTGGGACATGGCAT
65 ACCATATCTAGGACATGGCAT
70740574 CGATATGAGA
Statistics
Matches: 72, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
95 1 0.01
96 71 0.99
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.30
Consensus pattern (96 bp):
TGTGATCCCATGTAAGACCATATCTAGGATATGGAATTGGCATCAATATGTGATCCCATGTAAAA
CCATATCTAGGACATGGCATTGCCATCGATA
Found at i:70740573 original size:48 final size:48
Alignment explanation
Indices: 70740393--70740542 Score: 239
Period size: 48 Copynumber: 3.1 Consensus size: 48
70740383 TAGGGTTATG
* * *
70740393 TGTGATCCCATGTAAGACCATATCTGGGATATGGAATTGGCATCAATA
1 TGTGATCCCATGTAAGACCATATCTAGGATATGGCATTGGCATCGATA
*
70740441 TGTGATCCCATGTAAGACCATATCTAGGATATGGCATTGCCATCGATA
1 TGTGATCCCATGTAAGACCATATCTAGGATATGGCATTGGCATCGATA
*
70740489 TGTGATCCCATGTAAGACCATCT-TCAGGATATGGCATTGGCATCGATA
1 TGTGATCCCATGTAAGACCATATCT-AGGATATGGCATTGGCATCGATA
70740537 TGTGAT
1 TGTGAT
70740543 TTTGTGTAAA
Statistics
Matches: 95, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
47 1 0.01
48 94 0.99
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.30
Consensus pattern (48 bp):
TGTGATCCCATGTAAGACCATATCTAGGATATGGCATTGGCATCGATA
Found at i:70740606 original size:42 final size:42
Alignment explanation
Indices: 70740526--70740606 Score: 99
Period size: 42 Copynumber: 1.9 Consensus size: 42
70740516 GATATGGCAT
* ** ***
70740526 TGGCATCGATATGTGATTTTGTGTAAAACCATGTCTGGGACA
1 TGGCATCGATATGAGACATTGTGTAAAACCACAACTGGGACA
*
70740568 TGGCATCGATATGAGACATTGTGTAAGACCACAACTGGG
1 TGGCATCGATATGAGACATTGTGTAAAACCACAACTGGG
70740607 TTATCAACTT
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
42 32 1.00
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.28
Consensus pattern (42 bp):
TGGCATCGATATGAGACATTGTGTAAAACCACAACTGGGACA
Found at i:70742161 original size:40 final size:40
Alignment explanation
Indices: 70742117--70742210 Score: 152
Period size: 40 Copynumber: 2.4 Consensus size: 40
70742107 AGTGCCATAG
*
70742117 ATAGCTGAAGCTATTCTAATTCGAACACTAAGTGCTATTT
1 ATAGCTGAAGCTATTCTAATACGAACACTAAGTGCTATTT
* *
70742157 ATAGCTGAACCTATTCTAATACGCACACTAAGTGCTATTT
1 ATAGCTGAAGCTATTCTAATACGAACACTAAGTGCTATTT
*
70742197 ATAGCCGAAGCTAT
1 ATAGCTGAAGCTAT
70742211 AACGAAATGC
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 49 1.00
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.32
Consensus pattern (40 bp):
ATAGCTGAAGCTATTCTAATACGAACACTAAGTGCTATTT
Found at i:70742223 original size:40 final size:40
Alignment explanation
Indices: 70742141--70742231 Score: 112
Period size: 40 Copynumber: 2.3 Consensus size: 40
70742131 TCTAATTCGA
* * *
70742141 ACACTAAGTGCTATTTATAGCTGAACCTATTCTAATACGC
1 ACACTAAGTGCTATTTATAGCCGAACCTATACGAATACGC
* *
70742181 ACACTAAGTGCTATTTATAGCCGAAGCTATAACGAA-ATGC
1 ACACTAAGTGCTATTTATAGCCGAACCTAT-ACGAATACGC
*
70742221 ACACCAAGTGC
1 ACACTAAGTGC
70742232 CAACATAGTT
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
40 41 0.93
41 3 0.07
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.26
Consensus pattern (40 bp):
ACACTAAGTGCTATTTATAGCCGAACCTATACGAATACGC
Found at i:70752906 original size:48 final size:48
Alignment explanation
Indices: 70752845--70753527 Score: 1059
Period size: 48 Copynumber: 14.1 Consensus size: 48
70752835 ATATACACAC
* *
70752845 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
70752893 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
70752941 ATCTCAT-TCATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATAT-ATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
70752989 ATCTTATATATATTTCACACTAGCCATTCGACTTTACCACATATACAT
1 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
70753037 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
70753085 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
70753133 ATCTCAT-TCATATTTCACACTAGCCATTCGGCTTTACCACATATACAA
1 ATCTCATAT-ATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
70753181 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
70753229 ATCTCATATCTCATACATATTTCACATTAGCCATTCGCCTTTACCACATAGACAT
1 ATCTC--A--T-AT--ATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
70753284 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
70753332 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
70753380 ATCTCAT-TCATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATAT-ATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
70753428 ATCTCAT-TCATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATAT-ATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * ** *
70753476 CTCTCATACATATTTCACGTTAGCCATTCGGCTTTATCACATATACAT
1 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
70753524 ATCT
1 ATCT
70753528 TACCACATAT
Statistics
Matches: 594, Mismatches: 28, Indels: 26
0.92 0.04 0.04
Matches are distributed among these distances:
47 2 0.00
48 542 0.91
49 1 0.00
50 3 0.01
51 1 0.00
52 1 0.00
53 2 0.00
55 42 0.07
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (48 bp):
ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:70753388 original size:28 final size:28
Alignment explanation
Indices: 70753356--70753436 Score: 70
Period size: 28 Copynumber: 3.2 Consensus size: 28
70753346 TCACATTAGC
70753356 CATTCGGCTTTACCACATATACATATCT
1 CATTCGGCTTTACCACATATACATATCT
*** *
70753384 CATTCATATTT--CAC----AC-TAGC-
1 CATTCGGCTTTACCACATATACATATCT
70753404 CATTCGGCTTTACCACATATACATATCT
1 CATTCGGCTTTACCACATATACATATCT
70753432 CATTC
1 CATTC
70753437 ATATTTCACA
Statistics
Matches: 37, Mismatches: 8, Indels: 16
0.61 0.13 0.26
Matches are distributed among these distances:
20 8 0.22
21 3 0.08
22 5 0.14
26 5 0.14
27 3 0.08
28 13 0.35
ACGTcount: A:0.28, C:0.30, G:0.06, T:0.36
Consensus pattern (28 bp):
CATTCGGCTTTACCACATATACATATCT
Found at i:70767441 original size:40 final size:39
Alignment explanation
Indices: 70767396--70767525 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
70767386 CGGAATATAA
70767396 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
70767436 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
70767476 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
70767516 CCGGATATAA
1 CCGGATATAA
70767526 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:70767540 original size:40 final size:40
Alignment explanation
Indices: 70767412--70767563 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
70767402 ATAACCATGT
* * *
70767412 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
70767452 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
70767492 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
70767532 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
70767564 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:70767546 original size:80 final size:80
Alignment explanation
Indices: 70767412--70767561 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
70767402 ATAACCATGT
*
70767412 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
70767476 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
70767492 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
70767555 CCCGGAT
64 CCCGGAT
70767562 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:70775276 original size:39 final size:40
Alignment explanation
Indices: 70775232--70775397 Score: 147
Period size: 40 Copynumber: 4.2 Consensus size: 40
70775222 CGGAATATAA
*
70775232 CCGGATATAACCAGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* *** * *
70775271 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
70775311 CCGGATGTAGCCACTAGCACAATTGCCTTC-GGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
70775350 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
70775390 CCGGATAT
1 CCGGATAT
70775398 CATTCAATTT
Statistics
Matches: 99, Mismatches: 26, Indels: 3
0.77 0.20 0.02
Matches are distributed among these distances:
39 40 0.40
40 59 0.60
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:70775353 original size:79 final size:80
Alignment explanation
Indices: 70775247--70775395 Score: 196
Period size: 79 Copynumber: 1.9 Consensus size: 80
70775237 TATAACCAGT
* *
70775247 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGTCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTC-CAGCA-GAATTGCCTTCGGGGCTTAG
70775310 CCCGGATGTAGCCACTA
64 CCCGGATGTAGCCACTA
* * * * *
70775327 GCACAATTGCCTTC-GGTCTTAACCCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCCAGCAGAATTGCCTTCGGGGCTTAGCC
70775391 CGGAT
66 CGGAT
70775396 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
78 3 0.05
79 44 0.73
80 13 0.22
ACGTcount: A:0.21, C:0.28, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCCAGCAGAATTGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:70785328 original size:40 final size:40
Alignment explanation
Indices: 70785283--70785412 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
70785273 TCGGAATATA
70785283 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
70785323 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
70785363 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
70785403 CCGGATATAA
1 CCGGATATAA
70785413 TTTCCAGCAT
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:70789643 original size:80 final size:80
Alignment explanation
Indices: 70789510--70789712 Score: 302
Period size: 80 Copynumber: 2.5 Consensus size: 80
70789500 TCGAATGATG
* *
70789510 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTTACTAAATCCGGACTAAGATCCGAAGGCATT
*
70789574 TGTGTGAGTTACTAAA
65 TGTGCGAGTTACTAAA
* *
70789590 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTTACTAAATCCGGACTAAGATCCGAAGGCATT
70789654 TGTGCGAGTTACTAAA
65 TGTGCGAGTTACTAAA
* *
70789670 TCCGGGTTAAGTCCCGAAGGCATTTGTGCAAGCTACTATAATC
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTA-AATC
70789713 GGGCTATGTC
Statistics
Matches: 110, Mismatches: 9, Indels: 7
0.87 0.07 0.06
Matches are distributed among these distances:
79 1 0.01
80 97 0.88
81 12 0.11
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.27
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTAAA
Found at i:70789729 original size:40 final size:40
Alignment explanation
Indices: 70789510--70789712 Score: 268
Period size: 40 Copynumber: 5.0 Consensus size: 40
70789500 TCGAATGATG
* * * *
70789510 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAA
*
70789550 TCCGGACTAAGATCCGAAGGCATTTGTGTGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
70789590 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
70789630 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
** * *
70789670 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCAAGCTACTATAA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AA
70789711 TC
1 TC
70789713 GGGCTATGTC
Statistics
Matches: 149, Mismatches: 10, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
39 1 0.01
40 137 0.92
41 11 0.07
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.27
Consensus pattern (40 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:70789735 original size:40 final size:40
Alignment explanation
Indices: 70789510--70789735 Score: 264
Period size: 40 Copynumber: 5.7 Consensus size: 40
70789500 TCGAATGATG
* * *
70789510 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
70789550 TCCGGACTAAGAT-CCGAAGGCATTTGTGTGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
70789590 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
70789630 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
70789670 TCCGGGTTAAGTCCCGAAGGCATTTGTGCAAGCTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
70789711 T-CGGGCTATGTCCCGAAGGTATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
70789736 AACGAGTAGC
Statistics
Matches: 169, Mismatches: 13, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
39 1 0.01
40 158 0.93
41 10 0.06
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:70806348 original size:6 final size:6
Alignment explanation
Indices: 70806333--70806413 Score: 67
Period size: 6 Copynumber: 13.2 Consensus size: 6
70806323 TATCATAACT
* * *
70806333 AGAATC AGAATT AGAATC AGAATC AG-GTGAC AGAATC AGAATC AGAATT
1 AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC
* *
70806382 AGTATC AGGTAA-C AGAATC AAAATC AGAATC A
1 AGAATC A-G-AATC AGAATC AGAATC AGAATC A
70806414 ATATCAGGTA
Statistics
Matches: 59, Mismatches: 10, Indels: 12
0.73 0.12 0.15
Matches are distributed among these distances:
5 3 0.05
6 48 0.81
7 6 0.10
8 2 0.03
ACGTcount: A:0.48, C:0.14, G:0.19, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:70806369 original size:31 final size:31
Alignment explanation
Indices: 70806328--70806442 Score: 142
Period size: 31 Copynumber: 3.7 Consensus size: 31
70806318 AACATTATCA
* *
70806328 TAACTAGAATCAGAATTAGAATCAGAATCAGG
1 TAAC-AGAATCAAAATCAGAATCAGAATCAGG
* * * *
70806360 TGACAGAATCAGAATCAGAATTAGTATCAGG
1 TAACAGAATCAAAATCAGAATCAGAATCAGG
70806391 TAACAGAATCAAAATCAGAATCA-ATATCAGG
1 TAACAGAATCAAAATCAGAATCAGA-ATCAGG
*
70806422 TAACAGAATCAAAATTAGAAT
1 TAACAGAATCAAAATCAGAAT
70806443 GTGAATGCAA
Statistics
Matches: 73, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
31 70 0.96
32 3 0.04
ACGTcount: A:0.49, C:0.13, G:0.17, T:0.22
Consensus pattern (31 bp):
TAACAGAATCAAAATCAGAATCAGAATCAGG
Found at i:70806985 original size:27 final size:27
Alignment explanation
Indices: 70806955--70807058 Score: 106
Period size: 27 Copynumber: 3.9 Consensus size: 27
70806945 GGGGTAAAAT
* *
70806955 GGTAATTTTACCCCACTAGGGTATCTC
1 GGTAATTCTACCCTACTAGGGTATCTC
70806982 GGTAATTCTACCCTA-TAGGGGTA-CTTC
1 GGTAATTCTACCCTACTA-GGGTATC-TC
* * *
70807009 AGTAATTCTACCCTAC-AAGGTATTTC
1 GGTAATTCTACCCTACTAGGGTATCTC
* *
70807035 GGTATTTCTACCCTACAAGGGTAT
1 GGTAATTCTACCCTACTAGGGTAT
70807059 TTTAGTAATT
Statistics
Matches: 64, Mismatches: 8, Indels: 10
0.78 0.10 0.12
Matches are distributed among these distances:
26 23 0.36
27 41 0.64
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACTAGGGTATCTC
Found at i:70807047 original size:53 final size:54
Alignment explanation
Indices: 70806956--70807068 Score: 138
Period size: 53 Copynumber: 2.1 Consensus size: 54
70806946 GGGTAAAATG
* * * *
70806956 GTAATTTTACCCCACTAGGGTATCTCGGTAATTCTACCCTATAGGGGTACTTCA
1 GTAATTCTACCCCACTAAGGTATCTCGGTAATTCTACCCTACAAGGGTACTTCA
* * * * *
70807010 GTAATTCTACCCTAC-AAGGTATTTCGGTATTTCTACCCTACAAGGGTATTTTA
1 GTAATTCTACCCCACTAAGGTATCTCGGTAATTCTACCCTACAAGGGTACTTCA
70807063 GTAATT
1 GTAATT
70807069 TTGTAAATCG
Statistics
Matches: 50, Mismatches: 9, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
53 37 0.74
54 13 0.26
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.36
Consensus pattern (54 bp):
GTAATTCTACCCCACTAAGGTATCTCGGTAATTCTACCCTACAAGGGTACTTCA
Found at i:70807082 original size:27 final size:27
Alignment explanation
Indices: 70807052--70807452 Score: 299
Period size: 27 Copynumber: 14.9 Consensus size: 27
70807042 CTACCCTACA
* **
70807052 AGGGTATTTTAGTAATTTTGTAAATCG
1 AGGGTATTTTGGTAATTTTACAAATCG
*** * ** *
70807079 AGGGTAAAATGATAATTTTGTAAATCA
1 AGGGTATTTTGGTAATTTTACAAATCG
* * *
70807106 ATGGTACTTTGGTAATTTTACAAGTCG
1 AGGGTATTTTGGTAATTTTACAAATCG
** **
70807133 AGGGTATTTTAATAATTTTACAGGTCG
1 AGGGTATTTTGGTAATTTTACAAATCG
** *
70807160 AGGGTATTTCAGTAATTTCACAAATC-
1 AGGGTATTTTGGTAATTTTACAAATCG
*
70807186 AGGGGTATTTTGGTAATTTTACAAA-CT
1 A-GGGTATTTTGGTAATTTTACAAATCG
* *
70807213 AGGGGTATTTTGATAATTTTACAAA-CT
1 A-GGGTATTTTGGTAATTTTACAAATCG
** * *
70807240 AGGGGTATTTTGGTAATTTTGTAAACCA
1 A-GGGTATTTTGGTAATTTTACAAATCG
*
70807268 AGGGTATTTTGGTAATTTTACAAA-CC
1 AGGGTATTTTGGTAATTTTACAAATCG
* * * *
70807294 AGGGGTATTTTGGTGATTTTATAAACCA
1 A-GGGTATTTTGGTAATTTTACAAATCG
** * *
70807322 AGGGTATACTAGTAATTTTACAAA-CT
1 AGGGTATTTTGGTAATTTTACAAATCG
** * *
70807348 AGGGGTATTTTGGTAATTTTGTAAACCA
1 A-GGGTATTTTGGTAATTTTACAAATCG
*
70807376 AGGGTATTTTGGTAATTGTACAAATCG
1 AGGGTATTTTGGTAATTTTACAAATCG
* * * *
70807403 AGGATATTTGGGTAATTTTATAAACCG
1 AGGGTATTTTGGTAATTTTACAAATCG
* *
70807430 GGGGTACTTTGGTAATTTTACAA
1 AGGGTATTTTGGTAATTTTACAA
70807453 CTGGGGGTAT
Statistics
Matches: 301, Mismatches: 66, Indels: 14
0.79 0.17 0.04
Matches are distributed among these distances:
26 6 0.02
27 289 0.96
28 6 0.02
ACGTcount: A:0.31, C:0.08, G:0.22, T:0.39
Consensus pattern (27 bp):
AGGGTATTTTGGTAATTTTACAAATCG
Found at i:70807148 original size:54 final size:54
Alignment explanation
Indices: 70807050--70807473 Score: 358
Period size: 54 Copynumber: 7.9 Consensus size: 54
70807040 TTCTACCCTA
* *** * * *
70807050 CAAGGGTATTTTAGTAATTTTGTA-AATCGA-GGGTAAAATGATAATTTTGTAAAT
1 CAAGGGTATTTTGGTAA-TTT-TACAATCGAGGGGTATTTTGGTAATTTTATAAAC
* * ** * ***
70807104 CAATGGTACTTTGGTAATTTTACAAGTCGA-GGGTATTTTAATAATTTTACAGGT
1 CAAGGGTATTTTGGTAATTTTACAA-TCGAGGGGTATTTTGGTAATTTTATAAAC
* ** * *
70807158 CGAGGGTATTTCAGTAATTTCACAAATC-AGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTAC-AATCGAGGGGTATTTTGGTAATTTTATAAAC
* * * * * *
70807212 TAGGGGTATTTTGATAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAATCGAGGGGTATTTTGGTAATTTTATAAAC
* * *
70807266 CAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAAC
1 CAAGGGTATTTTGGTAATTTTACAATCGAGGGGTATTTTGGTAATTTTATAAAC
** * * * *
70807320 CAAGGGTATACTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAATCGAGGGGTATTTTGGTAATTTTATAAAC
* * *
70807374 CAAGGGTATTTTGGTAATTGTACAAATCGA-GGATATTTGGGTAATTTTATAAAC
1 CAAGGGTATTTTGGTAATTTTAC-AATCGAGGGGTATTTTGGTAATTTTATAAAC
** * **
70807428 CGGGGGTACTTTGGTAATTTTACAA-CTG-GGGGTATTTCAGTAATTT
1 CAAGGGTATTTTGGTAATTTTACAATC-GAGGGGTATTTTGGTAATTT
70807474 GGTAAACTAA
Statistics
Matches: 302, Mismatches: 60, Indels: 17
0.80 0.16 0.04
Matches are distributed among these distances:
52 3 0.01
53 26 0.09
54 267 0.88
55 6 0.02
ACGTcount: A:0.31, C:0.08, G:0.22, T:0.39
Consensus pattern (54 bp):
CAAGGGTATTTTGGTAATTTTACAATCGAGGGGTATTTTGGTAATTTTATAAAC
Found at i:70807338 original size:108 final size:107
Alignment explanation
Indices: 70807160--70807480 Score: 421
Period size: 108 Copynumber: 3.0 Consensus size: 107
70807150 TTACAGGTCG
** * * * *
70807160 AGGGTATTTCAGTAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTG
1 AGGGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTATAAACCAGGGGTATTTAG
70807225 ATAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCA
66 -TAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCA
* * * *
70807268 AGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAAGGGTATACTA
1 AGGGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTATAAACCAGGGGTAT-TTA
70807333 GTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCA
65 GTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCA
* * * *
70807376 AGGGTATTTTGGTAATTGTACAAATC-GAGGATATTTGGGTAATTTTATAAACCGGGGGTACTTT
1 AGGGTATTTTGGTAATTTTACAAATCAG-GGGTATTTTGGTAATTTTATAAACCAGGGGTA-TTT
* * ** *
70807440 GGTAATTTTAC-AACTGGGGGTATTTCAGTAATTTGGTAAAC
64 AGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAAC
70807481 TAAAGTATTC
Statistics
Matches: 187, Mismatches: 23, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
107 27 0.14
108 157 0.84
109 3 0.02
ACGTcount: A:0.31, C:0.09, G:0.22, T:0.38
Consensus pattern (107 bp):
AGGGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTATAAACCAGGGGTATTTAG
TAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCA
Found at i:70809447 original size:6 final size:6
Alignment explanation
Indices: 70809438--70809553 Score: 85
Period size: 6 Copynumber: 18.8 Consensus size: 6
70809428 TATTAGAACT
* *
70809438 AGAATC AGAATC AGAATC AGAATC AG-GTGAC AGAATC AGAATT AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC
* * * * *
70809487 AGAATC AGTATC AGGTAA-C AGAATC AAAACC AGAATT AGTATC AGGTAA-C
1 AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC AGAATC A-G-AATC
*
70809537 AGAATC AAAATC AGAAT
1 AGAATC AGAATC AGAAT
70809554 GTGAATGCAA
Statistics
Matches: 85, Mismatches: 16, Indels: 18
0.71 0.13 0.15
Matches are distributed among these distances:
5 5 0.06
6 68 0.80
7 9 0.11
8 3 0.04
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:70809473 original size:19 final size:19
Alignment explanation
Indices: 70809449--70809512 Score: 78
Period size: 19 Copynumber: 3.4 Consensus size: 19
70809439 GAATCAGAAT
*
70809449 CAGAATCAGAATCAGGTGA
1 CAGAATCAGAATCAGGTAA
*
70809468 CAGAATCAGAATTA-G-AA
1 CAGAATCAGAATCAGGTAA
*
70809485 TCAGAATCAGTATCAGGTAA
1 -CAGAATCAGAATCAGGTAA
70809505 CAGAATCA
1 CAGAATCA
70809513 AAACCAGAAT
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
17 1 0.03
18 13 0.34
19 22 0.58
20 2 0.05
ACGTcount: A:0.45, C:0.16, G:0.20, T:0.19
Consensus pattern (19 bp):
CAGAATCAGAATCAGGTAA
Found at i:70809474 original size:31 final size:31
Alignment explanation
Indices: 70809438--70809553 Score: 133
Period size: 31 Copynumber: 3.5 Consensus size: 31
70809428 TATTAGAACT
* * *
70809438 AGAATCAGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
70809469 AGAATCAGAATTAGAATCAGAATCAGTATCAGGTAAC
1 AGAATC---A--A-AATCAGAATCAGTATCAGGTAAC
* *
70809506 AGAATCAAAACCAGAATTAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
70809537 AGAATCAAAATCAGAAT
1 AGAATCAAAATCAGAAT
70809554 GTGAATGCAA
Statistics
Matches: 73, Mismatches: 6, Indels: 12
0.80 0.07 0.13
Matches are distributed among these distances:
31 43 0.59
32 1 0.01
34 2 0.03
37 27 0.37
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.19
Consensus pattern (31 bp):
AGAATCAAAATCAGAATCAGTATCAGGTAAC
Found at i:70809485 original size:37 final size:37
Alignment explanation
Indices: 70809438--70809553 Score: 127
Period size: 37 Copynumber: 3.3 Consensus size: 37
70809428 TATTAGAACT
*
70809438 AGAATCAGAATCAGAATCAGAATCAGGTGACAGAATC
1 AGAATCAGAATCAGAATCAGAATCAGGTAACAGAATC
* *
70809475 AGAATTAGAATCAGAATCAGTATCAGGTAACAGAATC
1 AGAATCAGAATCAGAATCAGAATCAGGTAACAGAATC
* * *
70809512 ---A--A-AACCAGAATTAGTATCAGGTAACAGAATC
1 AGAATCAGAATCAGAATCAGAATCAGGTAACAGAATC
*
70809543 AAAATCAGAAT
1 AGAATCAGAAT
70809554 GTGAATGCAA
Statistics
Matches: 67, Mismatches: 6, Indels: 12
0.79 0.07 0.14
Matches are distributed among these distances:
31 27 0.40
32 1 0.01
34 2 0.03
36 1 0.01
37 36 0.54
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.19
Consensus pattern (37 bp):
AGAATCAGAATCAGAATCAGAATCAGGTAACAGAATC
Found at i:70810096 original size:27 final size:27
Alignment explanation
Indices: 70810066--70810172 Score: 133
Period size: 27 Copynumber: 4.0 Consensus size: 27
70810056 GGGGTGAAAT
* * *
70810066 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
70810093 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
70810120 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* **
70810147 GATGTTTCTACCCTACAAGGGTATTT
1 GGTAATTCTACCCTACAAGGGTATTT
70810173 TAGTAATTTT
Statistics
Matches: 70, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 70 1.00
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:70810125 original size:54 final size:54
Alignment explanation
Indices: 70810067--70810182 Score: 151
Period size: 54 Copynumber: 2.1 Consensus size: 54
70810057 GGGTGAAATG
* *
70810067 GTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTTTACCCCACAAGGGTATCTCGATAATTCTACCCTACAAGGGTATTTCA
* * * * ** *
70810121 GTAATTCTACCCTACAGGGGTATTTCGATGTTTCTACCCTACAAGGGTATTTTA
1 GTAATTTTACCCCACAAGGGTATCTCGATAATTCTACCCTACAAGGGTATTTCA
70810175 GTAATTTT
1 GTAATTTT
70810183 GTAAATCGAG
Statistics
Matches: 52, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.36
Consensus pattern (54 bp):
GTAATTTTACCCCACAAGGGTATCTCGATAATTCTACCCTACAAGGGTATTTCA
Done.