Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 225 of 318
Found at i:70810194 original size:27 final size:27
Alignment explanation
Indices: 70810164--70810511 Score: 231
Period size: 27 Copynumber: 12.9 Consensus size: 27
70810154 CTACCCTACA
* **
70810164 AGGGTATTTTAGTAATTTTGTAAATCG
1 AGGGTATTTTGGTAATTTTACAAATCG
*** * *
70810191 AGGGTAAAATGATAATTATGTA-AAAT-A
1 AGGGTATTTTGGTAATT-T-TACAAATCG
* *
70810218 AGGGTACTTTGGTAATTTTACAAGTCG
1 AGGGTATTTTGGTAATTTTACAAATCG
*** **
70810245 AGGGTATTTCAATAATTTTACAGGTCG
1 AGGGTATTTTGGTAATTTTACAAATCG
* ** *
70810272 AAGGTATTTCAGTAATTTCACAAATC-
1 AGGGTATTTTGGTAATTTTACAAATCG
*
70810298 AGGGGTATTTTGGTAATTTTACAAA-CT
1 A-GGGTATTTTGGTAATTTTACAAATCG
* *
70810325 AGGGCTATTTTGATAATTTTACAAA-CC
1 AGGG-TATTTTGGTAATTTTACAAATCG
* * * *
70810352 AGGGGTATTTTTGGTGATTTTATAAACCA
1 A-GGGTA-TTTTGGTAATTTTACAAATCG
* * *
70810381 AGGGTATTCTAGTAATTTTACAAA-CT
1 AGGGTATTTTGGTAATTTTACAAATCG
** * *
70810407 AGGGGTATTTTGGTAATTTTGTAAACCA
1 A-GGGTATTTTGGTAATTTTACAAATCG
*
70810435 AGGGTATTTTGGTAATTGTACAAATCG
1 AGGGTATTTTGGTAATTTTACAAATCG
* * * *
70810462 AGGATATTTGGGTAATTTTATAAACCG
1 AGGGTATTTTGGTAATTTTACAAATCG
* *
70810489 GGGGTACTTTGGTAATTTTACAA
1 AGGGTATTTTGGTAATTTTACAA
70810512 CTGGGGGTAT
Statistics
Matches: 251, Mismatches: 58, Indels: 24
0.75 0.17 0.07
Matches are distributed among these distances:
25 2 0.01
26 11 0.04
27 205 0.82
28 30 0.12
29 3 0.01
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.38
Consensus pattern (27 bp):
AGGGTATTTTGGTAATTTTACAAATCG
Found at i:70810411 original size:109 final size:107
Alignment explanation
Indices: 70810274--70810532 Score: 283
Period size: 109 Copynumber: 2.4 Consensus size: 107
70810264 ACAGGTCGAA
* *
70810274 GGTATTTCAGTAATTTCACAAA-TCAGGGGTATTTTGGTAATTTTACAAA-CTAGGGCTATTTTG
1 GGTATTT-AGTAATTTTACAAACT-AGGGGTATTTTGGTAATTTTACAAACCAAGGG-TATTTTG
* * * *
70810337 ATAATTTTACAAACC-AGGGGTATTTTTGGTGATTTTATAAACCAAG
63 ATAATTGTACAAACCGA-GGATA-TTTGGGTAATTTTATAAACCAAG
** *
70810383 GGTATTCTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGT
1 GGTATT-TAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGAT
* **
70810448 AATTGTACAAATCGAGGATATTTGGGTAATTTTATAAACCGGG
65 AATTGTACAAACCGAGGATATTTGGGTAATTTTATAAACCAAG
* * **
70810491 GGTACTTTGGTAATTTTAC-AACTGGGGGTATTTCAGTAATTT
1 GGTA-TTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTT
70810533 GGTAAACTAA
Statistics
Matches: 129, Mismatches: 16, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
107 20 0.16
108 34 0.26
109 67 0.52
110 8 0.06
ACGTcount: A:0.30, C:0.10, G:0.22, T:0.39
Consensus pattern (107 bp):
GGTATTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGATA
ATTGTACAAACCGAGGATATTTGGGTAATTTTATAAACCAAG
Found at i:70810494 original size:54 final size:54
Alignment explanation
Indices: 70810274--70810511 Score: 264
Period size: 54 Copynumber: 4.4 Consensus size: 54
70810264 ACAGGTCGAA
** * * * *
70810274 GGTATTTCAGTAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAA-CTAG
1 GGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAG
* *
70810327 GGCTATTTTGATAATTTTACAAACCAGGGGTATTTTTGGTGATTTTATAAACCAAG
1 GG-TATTTTGGTAATTTTACAAACCAGGGGTA-TTTTGGTAATTTTATAAACCAAG
* * * *
70810383 GGTATTCTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAAG
1 GGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAG
* * * * **
70810437 GGTATTTTGGTAATTGTACAAATC-GAGGATATTTGGGTAATTTTATAAACCGGG
1 GGTATTTTGGTAATTTTACAAACCAG-GGGTATTTTGGTAATTTTATAAACCAAG
*
70810491 GGTACTTTGGTAATTTTACAA
1 GGTATTTTGGTAATTTTACAA
70810512 CTGGGGGTAT
Statistics
Matches: 155, Mismatches: 26, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
53 3 0.02
54 106 0.68
55 41 0.26
56 5 0.03
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.39
Consensus pattern (54 bp):
GGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAG
Found at i:70812598 original size:40 final size:39
Alignment explanation
Indices: 70812553--70812682 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
70812543 CGGAATACAA
70812553 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* *
70812593 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* * * *
70812633 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACGAA-TGCCTTCGGGTCTTAGC
70812673 CCGGATATAA
1 CCGGATATAA
70812683 TTTCCAGCAT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.23
Consensus pattern (39 bp):
CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
Found at i:70818449 original size:10 final size:10
Alignment explanation
Indices: 70818434--70818458 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
70818424 TTTACACAAA
70818434 AACATTCTTC
1 AACATTCTTC
70818444 AACATTCTTC
1 AACATTCTTC
70818454 AACAT
1 AACAT
70818459 ATTGTGGCTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.36, C:0.28, G:0.00, T:0.36
Consensus pattern (10 bp):
AACATTCTTC
Found at i:70822746 original size:13 final size:13
Alignment explanation
Indices: 70822728--70822752 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
70822718 TGTGGGTACA
70822728 CACGGCCATGTCG
1 CACGGCCATGTCG
70822741 CACGGCCATGTC
1 CACGGCCATGTC
70822753 TAGCTTTGTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.40, G:0.28, T:0.16
Consensus pattern (13 bp):
CACGGCCATGTCG
Found at i:70834272 original size:24 final size:24
Alignment explanation
Indices: 70834245--70834295 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
70834235 ATTAAGTATG
70834245 CTAAAATTCAGTATGAATAAAGTT
1 CTAAAATTCAGTATGAATAAAGTT
70834269 CTAAAATTCAGTATGAATAAAGTT
1 CTAAAATTCAGTATGAATAAAGTT
70834293 CTA
1 CTA
70834296 TTATTTAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.45, C:0.10, G:0.12, T:0.33
Consensus pattern (24 bp):
CTAAAATTCAGTATGAATAAAGTT
Found at i:70834761 original size:5 final size:5
Alignment explanation
Indices: 70834751--70834779 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
70834741 AAATGCTCGT
70834751 GAAAA GAAAA G-AAA GAAAA GAAAA GAAAA
1 GAAAA GAAAA GAAAA GAAAA GAAAA GAAAA
70834780 AAAGAGAGCA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
4 4 0.17
5 19 0.83
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (5 bp):
GAAAA
Found at i:70834770 original size:14 final size:14
Alignment explanation
Indices: 70834751--70834784 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
70834741 AAATGCTCGT
70834751 GAAAAGAAAAGAAA
1 GAAAAGAAAAGAAA
70834765 GAAAAGAAAAGAAA
1 GAAAAGAAAAGAAA
70834779 -AAAAGA
1 GAAAAGA
70834785 GAGCATATGT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 6 0.30
14 14 0.70
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (14 bp):
GAAAAGAAAAGAAA
Found at i:70839367 original size:40 final size:40
Alignment explanation
Indices: 70839246--70839368 Score: 126
Period size: 40 Copynumber: 3.1 Consensus size: 40
70839236 TTGAATGATA
* * * ***
70839246 CCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGGTTATAT
* * *
70839285 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGGTTATAT
70839325 CCGGGCTAAGACCCGAAGGC-ATTCGTGC-ACGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTA-GTGGTTATAT
70839365 CCGG
1 CCGG
70839369 TTGTATTCCG
Statistics
Matches: 69, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
39 13 0.19
40 56 0.81
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.22
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGGTTATAT
Found at i:70847406 original size:40 final size:40
Alignment explanation
Indices: 70847279--70847408 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
70847269 ATGCTGGAAA
* *
70847279 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
70847319 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
70847359 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
70847399 TTATATCCGG
1 TTATATCCGG
70847409 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:70849657 original size:16 final size:14
Alignment explanation
Indices: 70849636--70849702 Score: 57
Period size: 13 Copynumber: 4.6 Consensus size: 14
70849626 TCCTTCTATC
70849636 TTTTATTTATTCTTA
1 TTTTATTTATT-TTA
70849651 TTCTTATTTTATTTTA
1 TT-TTA-TTTATTTTA
70849667 TTTT-TTTATTTTCA
1 TTTTATTTATTTT-A
* *
70849681 TTTCAATTT-TATTA
1 TTT-TATTTATTTTA
70849695 TTTTATTT
1 TTTTATTT
70849703 TGAAAGATAT
Statistics
Matches: 44, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
13 12 0.27
14 8 0.18
15 7 0.16
16 11 0.25
17 6 0.14
ACGTcount: A:0.19, C:0.06, G:0.00, T:0.75
Consensus pattern (14 bp):
TTTTATTTATTTTA
Found at i:70849664 original size:5 final size:5
Alignment explanation
Indices: 70849636--70849703 Score: 56
Period size: 5 Copynumber: 13.8 Consensus size: 5
70849626 TCCTTCTATC
70849636 TTTTA -TTTA TTCTTA TTCTTA TTTTA TTTTA -TTT- TTTTA TTTTCA
1 TTTTA TTTTA TT-TTA TT-TTA TTTTA TTTTA TTTTA TTTTA TTTT-A
*
70849681 TTTCAA TTTTA --TTA TTTTA TTTT
1 TTT-TA TTTTA TTTTA TTTTA TTTT
70849704 GAAAGATATA
Statistics
Matches: 53, Mismatches: 2, Indels: 16
0.75 0.03 0.23
Matches are distributed among these distances:
3 3 0.06
4 10 0.19
5 21 0.40
6 19 0.36
ACGTcount: A:0.19, C:0.06, G:0.00, T:0.75
Consensus pattern (5 bp):
TTTTA
Found at i:70852618 original size:13 final size:13
Alignment explanation
Indices: 70852602--70852634 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
70852592 TTTAATTAAA
*
70852602 TTAGTTAATTAGT
1 TTAGATAATTAGT
70852615 TTAGATAATTAGT
1 TTAGATAATTAGT
70852628 TTA-ATAA
1 TTAGATAA
70852635 ACAAACCTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:70854335 original size:39 final size:39
Alignment explanation
Indices: 70854288--70854497 Score: 260
Period size: 39 Copynumber: 5.4 Consensus size: 39
70854278 AATGTTCGAG
70854288 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
70854327 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
70854366 TGATA-CCTGGGCTAAGCTCGAAGGCAATTGTGCGAGTTA
1 TGATATCC-GGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
70854405 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * ** *
70854444 TGATATCCGGGTTAAGTCTCGAAGGCCTTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** *
70854484 CCATAACCGGGCTA
1 TGATATCCGGGCTA
70854498 TGTACCGAAG
Statistics
Matches: 145, Mismatches: 23, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
38 2 0.01
39 115 0.79
40 28 0.19
ACGTcount: A:0.25, C:0.20, G:0.30, T:0.25
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:70854388 original size:78 final size:78
Alignment explanation
Indices: 70854287--70854497 Score: 325
Period size: 78 Copynumber: 2.7 Consensus size: 78
70854277 GAATGTTCGA
*
70854287 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGC
1 GTGATATCCGGGCTAAGCTCGAAGGCAATTGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGC
70854352 AATTGTGCAAATT
66 AATTGTGCAAATT
70854365 GTGATA-CCTGGGCTAAGCTCGAAGGCAATTGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGG
1 GTGATATCC-GGGCTAAGCTCGAAGGCAATTGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGG
70854429 CAATTGTGCAAATT
65 CAATTGTGCAAATT
* ** * ** *
70854443 GTGATATCCGGGTTAAGTCTCGAAGGCCTTTGTGCGGGTTACCATAACCGGGCTA
1 GTGATATCCGGGCTAAG-CTCGAAGGCAATTGTGCGAGTTATGATATCCGGGCTA
70854498 TGTACCGAAG
Statistics
Matches: 122, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
77 2 0.02
78 87 0.71
79 33 0.27
ACGTcount: A:0.25, C:0.20, G:0.30, T:0.25
Consensus pattern (78 bp):
GTGATATCCGGGCTAAGCTCGAAGGCAATTGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGC
AATTGTGCAAATT
Found at i:70857238 original size:13 final size:13
Alignment explanation
Indices: 70857220--70857247 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
70857210 TGTTGGTATC
70857220 AATCAATATCGTT
1 AATCAATATCGTT
70857233 AATCAATATCGTT
1 AATCAATATCGTT
70857246 AA
1 AA
70857248 ATTTCACATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.43, C:0.14, G:0.07, T:0.36
Consensus pattern (13 bp):
AATCAATATCGTT
Found at i:70861227 original size:39 final size:40
Alignment explanation
Indices: 70861109--70861326 Score: 244
Period size: 40 Copynumber: 5.5 Consensus size: 40
70861099 GCTCGATTGT
* * * * *
70861109 CTTCGGGACATAGCCCGG-TTATAGTGATTCGCACAATTGC
1 CTTCGGGACTTAACCCGGATT-TAGTAACTCGCACAAATGC
* * *
70861149 CTTCGGGAATTAGCCCGGATTTAGTAACTCGCACGAATGC
1 CTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGC
*
70861189 CTTCGGGACTTAACCCGG-TTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGC
* *
70861228 CTTC-GGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGC
* * * * *
70861267 CTTCGGGAATTGACCCGGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACTTAACCCGGATTTAGTAAC-TCGCACAAATGC
*
70861308 CTTCGGGACTTAGCCCGGA
1 CTTCGGGACTTAACCCGGA
70861327 CACCATTCGA
Statistics
Matches: 154, Mismatches: 20, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
38 13 0.08
39 48 0.31
40 65 0.42
41 28 0.18
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGC
Found at i:70869193 original size:40 final size:39
Alignment explanation
Indices: 70869149--70869367 Score: 199
Period size: 40 Copynumber: 5.5 Consensus size: 39
70869139 GCTCGATTGT
* * * *
70869149 CTTCGGGACATAGCCCGGTTATAGTGATTCACACAATTGC
1 CTTCGGGACATAGCCCGGTT-TAGTAACTCGCACAAATGC
* *
70869189 CTTCGAGA-ATTAGCCCGGATTTAGTAACTCGCACGAATGC
1 CTTCGGGACA-TAGCCCGG-TTTAGTAACTCGCACAAATGC
* * *
70869229 CTTCGGGACTTAACCCGGTATTGGTAACTCGCACAAATGC
1 CTTCGGGACATAGCCCGGT-TTAGTAACTCGCACAAATGC
* * *
70869269 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACATAGCCCGG-TTTAGTAACTCGCACAAATGC
* * * *
70869309 CTTCGGGA-ATTGACCCGGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACATAG-CCCGG-TTTAGTAAC-TCGCACAAATGC
*
70869350 CTTCGGGACTTAGCCCGG
1 CTTCGGGACATAGCCCGG
70869368 ACACCATTCG
Statistics
Matches: 150, Mismatches: 21, Indels: 15
0.81 0.11 0.08
Matches are distributed among these distances:
39 3 0.02
40 119 0.79
41 26 0.17
42 2 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CTTCGGGACATAGCCCGGTTTAGTAACTCGCACAAATGC
Found at i:70875038 original size:13 final size:13
Alignment explanation
Indices: 70875020--70875047 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
70875010 GTTGTTTATG
70875020 AAACTAATTAACT
1 AAACTAATTAACT
70875033 AAACTAATTAACT
1 AAACTAATTAACT
70875046 AA
1 AA
70875048 TTAAACTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.57, C:0.14, G:0.00, T:0.29
Consensus pattern (13 bp):
AAACTAATTAACT
Found at i:70884263 original size:40 final size:40
Alignment explanation
Indices: 70884183--70884401 Score: 327
Period size: 40 Copynumber: 5.5 Consensus size: 40
70884173 TTCGGATGAC
* *
70884183 ATCCGGGCTAAGTCCCAAAGGCA-TGGTGCTAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
*
70884222 ATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
* *
70884262 ATCCGGGCTAAGTCCTGAAGGCATTTGTGCTATTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
*
70884302 ATCCGGGCTAAGTCCCGAAGGCATTTTTGCTAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
* *
70884342 ATCCGGGGTAAGTCCCGAAGGCATTTGTGCGAGTTG-CTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACTAT
*
70884382 ATCC-GGCTAAATCCCGAAGG
1 ATCCGGGCTAAGTCCCGAAGG
70884402 TACTTGGGTT
Statistics
Matches: 165, Mismatches: 13, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 36 0.22
40 127 0.77
41 2 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
Found at i:70887112 original size:13 final size:13
Alignment explanation
Indices: 70887094--70887122 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
70887084 GGTTGTTTAT
70887094 TAAACTAATTAAC
1 TAAACTAATTAAC
70887107 TAAACTAATTAAC
1 TAAACTAATTAAC
70887120 TAA
1 TAA
70887123 TTAAACTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:70897585 original size:26 final size:26
Alignment explanation
Indices: 70897531--70897605 Score: 77
Period size: 26 Copynumber: 3.0 Consensus size: 26
70897521 TTTTGAAGAC
*
70897531 TTTTATTTATTATT--TTAC-TTTTA
1 TTTTATTTATTTTTAATTACTTTTTA
70897554 TCTTTATTTATTTTTAATTACTTTTTA
1 T-TTTATTTATTTTTAATTACTTTTTA
* *
70897581 TTTTATTTCTCTTTAA-TACTATTTT
1 TTTTATTTATTTTTAATTACT-TTTT
70897606 TACTTGATCT
Statistics
Matches: 44, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
23 1 0.02
24 12 0.27
25 4 0.09
26 21 0.48
27 6 0.14
ACGTcount: A:0.21, C:0.08, G:0.00, T:0.71
Consensus pattern (26 bp):
TTTTATTTATTTTTAATTACTTTTTA
Found at i:70900067 original size:49 final size:49
Alignment explanation
Indices: 70900011--70900466 Score: 740
Period size: 49 Copynumber: 9.4 Consensus size: 49
70900001 TACATATATG
* * * *
70900011 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
* *
70900060 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
70900109 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
* *
70900158 ----ATGAGGCCTAATGGCCGATGTGCTGAATGTGAAAGTGGATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
70900203 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
* *
70900252 TCTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
70900301 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
70900350 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
70900399 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
70900448 TGTGATAAGGCCTAATGGC
1 TGTGATGAGGCCTAATGGC
70900467 TAATGTAAAT
Statistics
Matches: 381, Mismatches: 22, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
45 43 0.11
49 338 0.89
ACGTcount: A:0.29, C:0.09, G:0.33, T:0.29
Consensus pattern (49 bp):
TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
Found at i:70900617 original size:37 final size:37
Alignment explanation
Indices: 70900567--70900651 Score: 152
Period size: 37 Copynumber: 2.3 Consensus size: 37
70900557 GGAATATGTT
*
70900567 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
70900604 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
70900641 CCGGGTAAGAC
1 CCGGGTAAGAC
70900652 TTCTTTTATA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.25, C:0.20, G:0.34, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:70905005 original size:40 final size:40
Alignment explanation
Indices: 70904950--70905166 Score: 231
Period size: 40 Copynumber: 5.4 Consensus size: 40
70904940 GCTCGATTGT
* * * * *
70904950 CTTCGGGACA-TAGCCCGGTTATAATGATTCGCACAATTGC
1 CTTCGGGA-ATTAGCCCGGTTTTAGTAACTCGCACAAATGC
* *
70904990 CTTCGGGAATTAGCCCGGATTTAGTAACTCGCACGAATGC
1 CTTCGGGAATTAGCCCGGTTTTAGTAACTCGCACAAATGC
* * *
70905030 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGAATTAGCCCGGTTTTAGTAACTCGCACAAATGC
* * *
70905070 CTTCGGGACTTAGCCCAGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGAATTAGCCCGGTTTTAGTAACTCGCACAAATGC
* * * *
70905110 CTTCGGGAATT-GACCCGGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGAATTAG-CCCGGTTTTAGTAAC-TCGCACAAATGC
*
70905151 CTTCGGGACTTAGCCC
1 CTTCGGGAATTAGCCC
70905167 AGACACCATT
Statistics
Matches: 151, Mismatches: 22, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
39 2 0.01
40 125 0.83
41 23 0.15
42 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CTTCGGGAATTAGCCCGGTTTTAGTAACTCGCACAAATGC
Found at i:70905048 original size:80 final size:80
Alignment explanation
Indices: 70904924--70905166 Score: 236
Period size: 80 Copynumber: 3.0 Consensus size: 80
70904914 CGGAATTTAA
* * * * * * * * * *
70904924 CCGGATATAGTGACTCGCTCGATTGTCTTCGGGACATAGCCCGGTTATAATGATTCGCACAATTG
1 CCGGATTTAGTAACTCGCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACTCGCACAAATG
70904989 CCTTCGGGAATTAGC
66 CCTTCGGGAATTAGC
* **
70905004 CCGGATTTAGTAACTCGCACGAATGCCTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATG
1 CCGGATTTAGTAACTCGCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACTCGCACAAATG
*
70905069 CCTTCGGGACTTAGC
66 CCTTCGGGAATTAGC
* * * * * * * * *
70905084 CCAGTTTTGGTAACTCGCACAAATGCCTTCGGGAATTGACCCGGATT-TAGTCACTTAGCACAAA
1 CCGGATTTAGTAACTCGCACGAATGCCTTCGGGACTTAACCCGG-TTATAATAAC-TCGCACAAA
* *
70905148 AGCCTTCGGGACTTAGC
64 TGCCTTCGGGAATTAGC
70905165 CC
1 CC
70905167 AGACACCATT
Statistics
Matches: 137, Mismatches: 24, Indels: 3
0.84 0.15 0.02
Matches are distributed among these distances:
80 109 0.80
81 28 0.20
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (80 bp):
CCGGATTTAGTAACTCGCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACTCGCACAAATG
CCTTCGGGAATTAGC
Found at i:70909269 original size:29 final size:29
Alignment explanation
Indices: 70909210--70909313 Score: 86
Period size: 29 Copynumber: 3.6 Consensus size: 29
70909200 GTGACGAGAT
* *
70909210 TGGCACTAAGTGTGC-ATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGA-GCTCGAAAAGTA
**
70909239 TGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGAGCTCGAAAAGTA
** * * * *
70909268 TGGCACTGTGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAA-AGTA
70909297 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
70909314 AATCGAGTAT
Statistics
Matches: 59, Mismatches: 14, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
28 2 0.03
29 56 0.95
30 1 0.02
ACGTcount: A:0.25, C:0.17, G:0.34, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTCGAAAAGTA
Found at i:70913835 original size:40 final size:40
Alignment explanation
Indices: 70913716--70913837 Score: 138
Period size: 40 Copynumber: 3.0 Consensus size: 40
70913706 AATTTAACCG
* * * * * *
70913716 GATATAGTGACTCGCTCGATTGTCTTTGGGACATAGCCCG
1 GATATAGTGACTCGCACGAATGCCTTCGGGACTTAGCCCA
* * *
70913756 GTTATAGTGATTCGCAC-AATTGCCTTCGGGAATTAGCCCA
1 GATATAGTGACTCGCACGAA-TGCCTTCGGGACTTAGCCCA
*
70913796 GATATAGTAACTCGCACGAATGCCTTCGGGACTTAGCCCA
1 GATATAGTGACTCGCACGAATGCCTTCGGGACTTAGCCCA
70913836 GA
1 GA
70913838 CACCATTCGA
Statistics
Matches: 67, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
39 1 0.01
40 64 0.96
41 2 0.03
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.27
Consensus pattern (40 bp):
GATATAGTGACTCGCACGAATGCCTTCGGGACTTAGCCCA
Found at i:70922509 original size:14 final size:15
Alignment explanation
Indices: 70922490--70922522 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
70922480 GGATGACACA
70922490 TTGTCCCAAACTAT-
1 TTGTCCCAAACTATG
70922504 TTGTCCCAAACTATG
1 TTGTCCCAAACTATG
70922519 TTGT
1 TTGT
70922523 GAATTCTGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 14 0.78
15 4 0.22
ACGTcount: A:0.24, C:0.24, G:0.12, T:0.39
Consensus pattern (15 bp):
TTGTCCCAAACTATG
Found at i:70933744 original size:46 final size:46
Alignment explanation
Indices: 70933693--70933894 Score: 207
Period size: 46 Copynumber: 4.4 Consensus size: 46
70933683 GCGAACTTGA
* * *
70933693 ACTCAACTCAACGAGCTT-GGGCGTTCTCATCCATAAGTGAACTCAG
1 ACTCAACTCAACGAG-TTCGAGCATTCGCATCCATAAGTGAACTCAG
*
70933739 ACTCAACTCAACGAGTTCGAGCATTCGCATCCATAAGTGAACTCGG
1 ACTCAACTCAACGAGTTCGAGCATTCGCATCCATAAGTGAACTCAG
* * * *
70933785 ACTCAACTCAACGAGTTCAGATGCCTAGTT-ACAT-C-TCA-CGAACTCGG
1 ACTCAACTCAACGAGTTC-GA-G-C-A-TTCGCATCCATAAGTGAACTCAG
* * *
70933832 ACTCTACTCAACGAGTTCGGGCATTGGCATCCATAAGTGAACTCAG
1 ACTCAACTCAACGAGTTCGAGCATTCGCATCCATAAGTGAACTCAG
*
70933878 GCTCAACTCAACGAGTT
1 ACTCAACTCAACGAGTT
70933895 TAGATGCCCA
Statistics
Matches: 131, Mismatches: 15, Indels: 20
0.79 0.09 0.12
Matches are distributed among these distances:
42 2 0.02
43 4 0.03
44 2 0.02
45 5 0.04
46 80 0.61
47 27 0.21
48 3 0.02
49 2 0.02
50 4 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.23
Consensus pattern (46 bp):
ACTCAACTCAACGAGTTCGAGCATTCGCATCCATAAGTGAACTCAG
Found at i:70933796 original size:51 final size:46
Alignment explanation
Indices: 70933677--70933799 Score: 149
Period size: 46 Copynumber: 2.7 Consensus size: 46
70933667 TGTAACCCGC
* ** * * *
70933677 CCATAAGCGAACTTGAACTCAACTCAACGAGCTTGGGCGTTCTCAT
1 CCATAAGTGAACTCAAACTCAACTCAACGAGCTTGAGCATTCGCAT
*
70933723 CCATAAGTGAACTCAGACTCAACTCAACGAG-TTCGAGCATTCGCAT
1 CCATAAGTGAACTCAAACTCAACTCAACGAGCTT-GAGCATTCGCAT
**
70933769 CCATAAGTGAACTCGGACTCAACTCAACGAG
1 CCATAAGTGAACTCAAACTCAACTCAACGAG
70933800 TTCAGATGCC
Statistics
Matches: 68, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
45 2 0.03
46 66 0.97
ACGTcount: A:0.32, C:0.28, G:0.19, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCAAACTCAACTCAACGAGCTTGAGCATTCGCAT
Found at i:70933856 original size:93 final size:93
Alignment explanation
Indices: 70933731--70933902 Score: 283
Period size: 93 Copynumber: 1.8 Consensus size: 93
70933721 ATCCATAAGT
70933731 GAACTCAGACTCAACTCAACGAGTTCGAGCATTCGCATCCATAAGTGAACTC-GGACTCAACTCA
1 GAACTCAGACTCAACTCAACGAGTTCGAGCATTCGCATCCATAAGTGAACTCAGG-CTCAACTCA
70933795 ACGAGTTCAGATGCCTAGTTACATCTCAC
65 ACGAGTTCAGATGCCTAGTTACATCTCAC
* * * *
70933824 GAACTCGGACTCTACTCAACGAGTTCGGGCATTGGCATCCATAAGTGAACTCAGGCTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGTTCGAGCATTCGCATCCATAAGTGAACTCAGGCTCAACTCAA
*
70933889 CGAGTTTAGATGCC
66 CGAGTTCAGATGCC
70933903 CAAATATCCT
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
93 71 0.97
94 2 0.03
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGTTCGAGCATTCGCATCCATAAGTGAACTCAGGCTCAACTCAA
CGAGTTCAGATGCCTAGTTACATCTCAC
Found at i:70940928 original size:46 final size:46
Alignment explanation
Indices: 70940808--70940983 Score: 244
Period size: 47 Copynumber: 3.8 Consensus size: 46
70940798 ACAATTGATA
* * *
70940808 AGTACCTATACCATGGCCCGTAACCAAATCAAGGTAACTTGTCCTAG
1 AGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTT-TTCTCG
70940855 AGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTTTTCTCG
1 AGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTTTTCTCG
* * * * **
70940901 GGTACCTATACAATTGCCCGTACCCAAATCAAGGTAACTCCTCTCTG
1 AGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTTTTCTC-G
*
70940948 AATACCTATACCATGGCCCGTAGCCAAATCAAGGTA
1 AGTACCTATACCATGGCCCGTAGCCAAATCAAGGTA
70940984 TTATTCACAC
Statistics
Matches: 114, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
46 43 0.38
47 71 0.62
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.24
Consensus pattern (46 bp):
AGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTTTTCTCG
Found at i:70940954 original size:93 final size:93
Alignment explanation
Indices: 70940809--70940983 Score: 280
Period size: 93 Copynumber: 1.9 Consensus size: 93
70940799 CAATTGATAA
* ** *
70940809 GTACCTATACCATGGCCCGTAACCAAATCAAGGTAACTTGTCCTAGAGTACCTATACCATGGCCC
1 GTACCTATACAATGGCCCGTAACCAAATCAAGGTAACTCCTCCTAGAATACCTATACCATGGCCC
70940874 GTAGCCAAATCAAGGTAACTTTTCTCGG
66 GTAGCCAAATCAAGGTAACTTTTCTCGG
* *
70940902 GTACCTATACAATTGCCCGTACCCAAATCAAGGTAACTCCTCTCT-GAATACCTATACCATGGCC
1 GTACCTATACAATGGCCCGTAACCAAATCAAGGTAACTCCTC-CTAGAATACCTATACCATGGCC
70940966 CGTAGCCAAATCAAGGTA
65 CGTAGCCAAATCAAGGTA
70940984 TTATTCACAC
Statistics
Matches: 75, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
93 73 0.97
94 2 0.03
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.24
Consensus pattern (93 bp):
GTACCTATACAATGGCCCGTAACCAAATCAAGGTAACTCCTCCTAGAATACCTATACCATGGCCC
GTAGCCAAATCAAGGTAACTTTTCTCGG
Found at i:70942396 original size:23 final size:24
Alignment explanation
Indices: 70942361--70942440 Score: 65
Period size: 24 Copynumber: 3.4 Consensus size: 24
70942351 TAGCTCCTAC
** *
70942361 TGAGCTTTTTGATA-GGCTCTTTG
1 TGAGCTTCCTGATATGGCTCTTTA
*
70942384 TGAGCTTCCTGATATGGTTCTTTA
1 TGAGCTTCCTGATATGGCTCTTTA
* ** *
70942408 TGAACTTCCCAATTATAGCTC-TTA
1 TGAGCTTCCTGA-TATGGCTCTTTA
70942432 TGAGCTTCC
1 TGAGCTTCC
70942441 CGTTATATAG
Statistics
Matches: 45, Mismatches: 10, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
23 12 0.27
24 27 0.60
25 6 0.13
ACGTcount: A:0.19, C:0.20, G:0.19, T:0.42
Consensus pattern (24 bp):
TGAGCTTCCTGATATGGCTCTTTA
Found at i:70944562 original size:40 final size:40
Alignment explanation
Indices: 70944435--70944564 Score: 156
Period size: 40 Copynumber: 3.2 Consensus size: 40
70944425 TTGCTGGAAA
* * *
70944435 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
70944475 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
* *
70944515 TTCTATCCGGGCTAAGACCCAAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
70944555 TTATATCCGG
1 TTATATCCGG
70944565 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:70946423 original size:28 final size:29
Alignment explanation
Indices: 70946392--70946465 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 29
70946382 TACTCGATTT
* *
70946392 CGCACACTTAGTGCCATGCGATT-TAGCC
1 CGCACACTTAGTGCCATGCCATTCGAGCC
** * *
70946420 CGCACACACAGTGCCATGCCCTTCGAGCT
1 CGCACACTTAGTGCCATGCCATTCGAGCC
70946449 CGCACACTTAGTGCCAT
1 CGCACACTTAGTGCCAT
70946466 ATATTTCCAG
Statistics
Matches: 37, Mismatches: 8, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
28 19 0.51
29 18 0.49
ACGTcount: A:0.22, C:0.36, G:0.20, T:0.22
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCCATTCGAGCC
Found at i:70954271 original size:28 final size:29
Alignment explanation
Indices: 70954240--70954313 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 29
70954230 TACTCGATTT
* *
70954240 CGCACACTTAGTGCCATGCGATT-TAGCC
1 CGCACACTTAGTGCCATGCCATTCGAGCC
** * *
70954268 CGCACACACAGTGCCATGCCCTTCGAGCT
1 CGCACACTTAGTGCCATGCCATTCGAGCC
70954297 CGCACACTTAGTGCCAT
1 CGCACACTTAGTGCCAT
70954314 ATATTTCCAG
Statistics
Matches: 37, Mismatches: 8, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
28 19 0.51
29 18 0.49
ACGTcount: A:0.22, C:0.36, G:0.20, T:0.22
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCCATTCGAGCC
Found at i:70963315 original size:40 final size:39
Alignment explanation
Indices: 70963188--70963317 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
70963178 ATGCTGGAAA
* *
70963188 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AGTGG
* * *
70963228 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGC-AGTGG
*
70963268 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA-GTGG
70963308 TTATATCCGG
1 TTATATCCGG
70963318 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.23
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTGG
Found at i:70966131 original size:22 final size:22
Alignment explanation
Indices: 70966103--70966145 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
70966093 TAAAGAGAGC
70966103 ATCTATATAATGGAACCAACCG
1 ATCTATATAATGGAACCAACCG
70966125 ATCTATATAATGGAACCAACC
1 ATCTATATAATGGAACCAACC
70966146 CATATAAGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.42, C:0.23, G:0.12, T:0.23
Consensus pattern (22 bp):
ATCTATATAATGGAACCAACCG
Found at i:70968845 original size:40 final size:39
Alignment explanation
Indices: 70968718--70968847 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
70968708 ATGCTGGAAA
* *
70968718 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AGTGG
* * *
70968758 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGC-AGTGG
*
70968798 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA-GTGG
70968838 TTATATCCGG
1 TTATATCCGG
70968848 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.23
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTGG
Found at i:70976878 original size:40 final size:39
Alignment explanation
Indices: 70976751--70976880 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
70976741 ATGCTGGAAA
* *
70976751 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AGTGG
* * *
70976791 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGC-AGTGG
*
70976831 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA-GTGG
70976871 TTATATCCGG
1 TTATATCCGG
70976881 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.23
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTGG
Found at i:70984638 original size:13 final size:13
Alignment explanation
Indices: 70984617--70984647 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
70984607 AATGACAAAT
*
70984617 AAAGTAAAAAGAA
1 AAAGAAAAAAGAA
70984630 AAAGAAAAAAGAA
1 AAAGAAAAAAGAA
70984643 AAAGA
1 AAAGA
70984648 GGTTAAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.81, C:0.00, G:0.16, T:0.03
Consensus pattern (13 bp):
AAAGAAAAAAGAA
Found at i:70985035 original size:2 final size:2
Alignment explanation
Indices: 70985028--70985061 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
70985018 AAAAGAAAAG
70985028 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
70985062 GTATGTATAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:70988443 original size:27 final size:28
Alignment explanation
Indices: 70988387--70988453 Score: 100
Period size: 27 Copynumber: 2.4 Consensus size: 28
70988377 TAATTTGTAC
*
70988387 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTACGAGTTTGATTATAT
* *
70988415 AGCACTAGGTGTACGAG-TTGATTTTAT
1 AGCACTAAGTGTACGAGTTTGATTATAT
70988442 AGCACTAAGTGT
1 AGCACTAAGTGT
70988454 GCGGACTCAC
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
27 20 0.57
28 15 0.43
ACGTcount: A:0.28, C:0.12, G:0.25, T:0.34
Consensus pattern (28 bp):
AGCACTAAGTGTACGAGTTTGATTATAT
Found at i:70995598 original size:30 final size:30
Alignment explanation
Indices: 70995562--70995620 Score: 118
Period size: 30 Copynumber: 2.0 Consensus size: 30
70995552 ACAAAATGAA
70995562 TAGGTATATCATTCAAGCCCTTACATTGTT
1 TAGGTATATCATTCAAGCCCTTACATTGTT
70995592 TAGGTATATCATTCAAGCCCTTACATTGT
1 TAGGTATATCATTCAAGCCCTTACATTGT
70995621 CTAACCAATG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.27, C:0.20, G:0.14, T:0.39
Consensus pattern (30 bp):
TAGGTATATCATTCAAGCCCTTACATTGTT
Found at i:70997153 original size:14 final size:14
Alignment explanation
Indices: 70997134--70997160 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
70997124 ACGGGGCTAG
70997134 GGAGCACTTACTAT
1 GGAGCACTTACTAT
70997148 GGAGCACTTACTA
1 GGAGCACTTACTA
70997161 GTGAGCTTGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (14 bp):
GGAGCACTTACTAT
Found at i:70997819 original size:25 final size:25
Alignment explanation
Indices: 70997778--70997845 Score: 91
Period size: 25 Copynumber: 2.7 Consensus size: 25
70997768 GGCCCGTTTT
* * *
70997778 ACAACTCATGTGTGCATTTACAGTC
1 ACAACTCGTGTGAGCATTTACAATC
*
70997803 ACAGCTCGTGTGAGCATTTACAATC
1 ACAACTCGTGTGAGCATTTACAATC
*
70997828 ACAACTTGTGTGAGCATT
1 ACAACTCGTGTGAGCATT
70997846 GTTCCAACAT
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (25 bp):
ACAACTCGTGTGAGCATTTACAATC
Found at i:70997947 original size:27 final size:27
Alignment explanation
Indices: 70997905--70997970 Score: 89
Period size: 27 Copynumber: 2.5 Consensus size: 27
70997895 GAGTAAACGA
*
70997905 AAATGGTAATAT-GAAATAGATATACC
1 AAATGGTTATATGGAAATAGATATACC
* **
70997931 AAATGTTTATATGGAAATAGATATATG
1 AAATGGTTATATGGAAATAGATATACC
70997958 AAATGGTTATATG
1 AAATGGTTATATG
70997971 AAGTGTTTAT
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 10 0.29
27 24 0.71
ACGTcount: A:0.45, C:0.03, G:0.18, T:0.33
Consensus pattern (27 bp):
AAATGGTTATATGGAAATAGATATACC
Found at i:70997960 original size:13 final size:13
Alignment explanation
Indices: 70997913--70997972 Score: 50
Period size: 13 Copynumber: 4.5 Consensus size: 13
70997903 GAAAATGGTA
70997913 ATATGAAATAGAT
1 ATATGAAATAGAT
** *
70997926 ATACCAAAT-GTTT
1 ATATGAAATAG-AT
70997939 ATATGGAAATAGAT
1 ATAT-GAAATAGAT
* *
70997953 ATATGAAATGGTT
1 ATATGAAATAGAT
70997966 ATATGAA
1 ATATGAA
70997973 GTGTTTATAA
Statistics
Matches: 36, Mismatches: 8, Indels: 6
0.72 0.16 0.12
Matches are distributed among these distances:
12 1 0.03
13 25 0.69
14 9 0.25
15 1 0.03
ACGTcount: A:0.47, C:0.03, G:0.17, T:0.33
Consensus pattern (13 bp):
ATATGAAATAGAT
Found at i:70997980 original size:13 final size:13
Alignment explanation
Indices: 70997931--70997999 Score: 61
Period size: 13 Copynumber: 5.3 Consensus size: 13
70997921 TAGATATACC
70997931 AAATGTTTATATGG
1 AAATGTTTATAT-G
*
70997945 AAATAG-ATATATG
1 AAAT-GTTTATATG
*
70997958 AAATGGTTATATG
1 AAATGTTTATATG
* *
70997971 AAGTGTTTATAAG
1 AAATGTTTATATG
*
70997984 AAATATTTATAT-
1 AAATGTTTATATG
70997996 AAAT
1 AAAT
70998000 ATAGATATGT
Statistics
Matches: 45, Mismatches: 8, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
12 5 0.11
13 30 0.67
14 9 0.20
15 1 0.02
ACGTcount: A:0.45, C:0.00, G:0.16, T:0.39
Consensus pattern (13 bp):
AAATGTTTATATG
Found at i:70999593 original size:25 final size:24
Alignment explanation
Indices: 70999565--70999611 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
70999555 AAATTATCTT
*
70999565 GAAAGGATAACAAGTGAAAAGGTCG
1 GAAAGAATAAC-AGTGAAAAGGTCG
* *
70999590 GAAAGAATATCATTGAAAAGGT
1 GAAAGAATAACAGTGAAAAGGT
70999612 AAAAAATGGA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 10 0.53
25 9 0.47
ACGTcount: A:0.49, C:0.06, G:0.28, T:0.17
Consensus pattern (24 bp):
GAAAGAATAACAGTGAAAAGGTCG
Found at i:71002051 original size:16 final size:13
Alignment explanation
Indices: 71002015--71002059 Score: 90
Period size: 13 Copynumber: 3.5 Consensus size: 13
71002005 CTAAAAATGC
71002015 AAAAATCATCAAG
1 AAAAATCATCAAG
71002028 AAAAATCATCAAG
1 AAAAATCATCAAG
71002041 AAAAATCATCAAG
1 AAAAATCATCAAG
71002054 AAAAAT
1 AAAAAT
71002060 TACTTACTTG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 32 1.00
ACGTcount: A:0.64, C:0.13, G:0.07, T:0.16
Consensus pattern (13 bp):
AAAAATCATCAAG
Found at i:71004546 original size:40 final size:40
Alignment explanation
Indices: 71004480--71004646 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
71004470 AAATTGAATG
* * *
71004480 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
71004519 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
71004559 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* ** *
71004599 CTATCCGGGCTAAGACCCGAAGGCAATTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
71004639 ATATCCGG
1 ATATCCGG
71004647 TTATATTCCG
Statistics
Matches: 104, Mismatches: 19, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 85 0.82
41 3 0.03
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:71012545 original size:40 final size:39
Alignment explanation
Indices: 71012379--71012546 Score: 162
Period size: 40 Copynumber: 4.2 Consensus size: 39
71012369 AAATTGAATG
* * **
71012379 ATATCCGGGCTAAGCCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGCCCGAAGGCAATTGTGC-GAGTGATT
* * **
71012418 ATATCCGGGTTAAGACCCGAAGGCAATTGTTGCTAGTGGCT
1 ATATCCGGGCTAAG-CCCGAAGGCAATTG-TGCGAGTGATT
*
71012459 ATATCCGGGCTAAGCCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGCCCGAAGGCAATT-GTGCGAGTGATT
*
71012498 CTAATCCGGGCTAAGACCCGAAGGCAATTGTGC-ACGTGATT
1 AT-ATCCGGGCTAAG-CCCGAAGGCAATTGTGCGA-GTGATT
71012539 ATATCCGG
1 ATATCCGG
71012547 TTATATTCCG
Statistics
Matches: 105, Mismatches: 16, Indels: 15
0.77 0.12 0.11
Matches are distributed among these distances:
39 24 0.23
40 41 0.39
41 37 0.35
42 3 0.03
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (39 bp):
ATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTGATT
Found at i:71015100 original size:43 final size:43
Alignment explanation
Indices: 71015039--71015189 Score: 250
Period size: 43 Copynumber: 3.5 Consensus size: 43
71015029 GAGACACGGC
71015039 CGTGTGTCTCAGCCGTGTGAAGGACATGGCCTTAGGACATAGG
1 CGTGTGTCTCAGCCGTGTGAAGGACATGGCCTTAGGACATAGG
*
71015082 CGTGTGTCTCAGCGGTGTGAAGGACATGGCCTTAGGACATAGG
1 CGTGTGTCTCAGCCGTGTGAAGGACATGGCCTTAGGACATAGG
* *
71015125 CGTGTGTCTCAGCCGTGTGAAGGACACGGCCTTAGGACATGGG
1 CGTGTGTCTCAGCCGTGTGAAGGACATGGCCTTAGGACATAGG
*
71015168 CGTGTGT-TCATGCCGCGTGAAG
1 CGTGTGTCTCA-GCCGTGTGAAG
71015190 TCTGTAGTTC
Statistics
Matches: 102, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
42 3 0.03
43 99 0.97
ACGTcount: A:0.19, C:0.21, G:0.36, T:0.23
Consensus pattern (43 bp):
CGTGTGTCTCAGCCGTGTGAAGGACATGGCCTTAGGACATAGG
Found at i:71028146 original size:9 final size:9
Alignment explanation
Indices: 71028129--71028165 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
71028119 TGAGTTTTCG
71028129 AATTCGAAT
1 AATTCGAAT
*
71028138 AACTCGAAT
1 AATTCGAAT
*
71028147 AATTTGAAT
1 AATTCGAAT
71028156 AATTCGAAT
1 AATTCGAAT
71028165 A
1 A
71028166 TCAAACTATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.46, C:0.11, G:0.11, T:0.32
Consensus pattern (9 bp):
AATTCGAAT
Found at i:71034998 original size:28 final size:28
Alignment explanation
Indices: 71034966--71035020 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
71034956 ATCAAAATTG
71034966 GAATGGTCTGCAATCAAATTTTTACAAT
1 GAATGGTCTGCAATCAAATTTTTACAAT
71034994 GAATGGTCTGCAATCAAATTTTTACAA
1 GAATGGTCTGCAATCAAATTTTTACAA
71035021 CTCTTCATGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.35
Consensus pattern (28 bp):
GAATGGTCTGCAATCAAATTTTTACAAT
Found at i:71036424 original size:43 final size:43
Alignment explanation
Indices: 71036269--71036425 Score: 151
Period size: 43 Copynumber: 3.7 Consensus size: 43
71036259 TGTATTATCG
* *
71036269 TGTAAGACCACGTCTGGGATGTTGGCATCGA-ATTATGATTTACA
1 TGTAAGACCACGTCTAGGACGTTGGCATCGATATT-TGA-TTACA
* * * *
71036313 TGTAAGACCACGTCTAGGACATTGGCATTG-TATTTGATTTCG
1 TGTAAGACCACGTCTAGGACGTTGGCATCGATATTTGATTACA
* * *
71036355 TGTAAGATCC-TGTCTAGGATAG-TGGCATCGATATTTGATTGCA
1 TGTAAGA-CCACGTCTAGGA-CGTTGGCATCGATATTTGATTACA
* *
71036398 TGTAAGACGACGTCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTAGGACGTTGGCAT
71036426 TGTACGAGCT
Statistics
Matches: 91, Mismatches: 16, Indels: 13
0.76 0.13 0.11
Matches are distributed among these distances:
42 27 0.30
43 35 0.38
44 29 0.32
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (43 bp):
TGTAAGACCACGTCTAGGACGTTGGCATCGATATTTGATTACA
Found at i:71036426 original size:85 final size:86
Alignment explanation
Indices: 71036266--71036429 Score: 219
Period size: 85 Copynumber: 1.9 Consensus size: 86
71036256 ATATGTATTA
*
71036266 TCGTGTAAGACCACGTCTGGGATGTTGGCATCGAATTATGATTTACATGTAAGACCACGTCTAGG
1 TCGTGTAAGACCACGTCTAGGATGTTGGCATCGAATTATGATTTACATGTAAGACCACGTCTAGG
71036331 ACATTGGCATTGTATTTGATT
66 ACATTGGCATTGTATTTGATT
* * *
71036352 TCGTGTAAGATCC-TGTCTAGGATAG-TGGCATCGATATT-TGA-TTGCATGTAAGACGACGTCT
1 TCGTGTAAGA-CCACGTCTAGGAT-GTTGGCATCGA-ATTATGATTTACATGTAAGACCACGTCT
* *
71036413 GGGACGTTGGCATTGTA
63 AGGACATTGGCATTGTA
71036430 CGAGCTTTCT
Statistics
Matches: 69, Mismatches: 6, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
85 33 0.48
86 30 0.43
87 6 0.09
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.33
Consensus pattern (86 bp):
TCGTGTAAGACCACGTCTAGGATGTTGGCATCGAATTATGATTTACATGTAAGACCACGTCTAGG
ACATTGGCATTGTATTTGATT
Found at i:71039766 original size:39 final size:40
Alignment explanation
Indices: 71039730--71039912 Score: 217
Period size: 40 Copynumber: 4.6 Consensus size: 40
71039720 CTTGCACAAG
* *
71039730 GCCTTCGGGTCTTAGCCCGGATATGGTCACTAGCACAGAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
71039770 GCCTTCGGGACTTAGCTC-GATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
71039809 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * * *
71039849 GCCTTCGGATCTTCGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
71039890 GCCTTCGGGACTTAGCCCGGATA
1 GCCTTCGGGTCTTAGCCCGGATA
71039913 CATTCGAATA
Statistics
Matches: 117, Mismatches: 22, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
39 35 0.30
40 55 0.47
41 27 0.23
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:71039784 original size:40 final size:40
Alignment explanation
Indices: 71039694--71039912 Score: 216
Period size: 40 Copynumber: 5.5 Consensus size: 40
71039684 CTCAAGTGAT
* * * *
71039694 CTTCGGGATTTAG-CCGGATATA-ACTACTTGCAC-AAGGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * *
71039732 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCACAGATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
71039772 CTTCGGGACTTAGCTC-GATATAGTCGCTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
71039811 CTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * * *
71039851 CTTC-GGATCTTCGTCCGGTTATAGTCACCTAGCACAAAAGC
1 CTTCGGGA-CTTAGCCCGGATATAGTCA-CTAGCACAAATGC
71039892 CTTCGGGACTTAGCCCGGATA
1 CTTCGGGACTTAGCCCGGATA
71039913 CATTCGAATA
Statistics
Matches: 145, Mismatches: 27, Indels: 15
0.78 0.14 0.08
Matches are distributed among these distances:
38 11 0.08
39 52 0.36
40 54 0.37
41 25 0.17
42 3 0.02
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:71039851 original size:79 final size:81
Alignment explanation
Indices: 71039730--71039912 Score: 225
Period size: 79 Copynumber: 2.3 Consensus size: 81
71039720 CTTGCACAAG
*
71039730 GCCTTCGGGTCTTAGCCCGGATATGGTCACTAGCACAGATGCCTTCGGGA-CTTAG-CTC-GATA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAGATGCCTTC-GGATCTTAGTC-CGGATA
* *
71039792 TAGTC-GCTAGCACAAAT
64 TAGTCACCTAGCACAAAA
* * *
71039809 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCAC-GAATGCCTTCGGATCTTCGTCCGGTTA
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAG-ATGCCTTCGGATCTTAGTCCGGATA
71039872 TAGTCACCTAGCACAAAA
64 TAGTCACCTAGCACAAAA
*
71039890 GCCTTCGGGACTTAGCCCGGATA
1 GCCTTCGGGTCTTAGCCCGGATA
71039913 CATTCGAATA
Statistics
Matches: 91, Mismatches: 7, Indels: 10
0.84 0.06 0.09
Matches are distributed among these distances:
78 5 0.05
79 45 0.49
80 9 0.10
81 32 0.35
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (81 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAGATGCCTTCGGATCTTAGTCCGGATATA
GTCACCTAGCACAAAA
Found at i:71046885 original size:40 final size:40
Alignment explanation
Indices: 71046796--71047015 Score: 225
Period size: 40 Copynumber: 5.5 Consensus size: 40
71046786 CTCAAGTAAT
* * * *
71046796 TTCGGGATTTAG-CCGGATATA-ACTACTTGCAC-AAGGCC
1 TTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGCC
* * *
71046834 TTCGGGTCTTAGCCCGGATATGGTCACTAGCACAGATGCC
1 TTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCC
*
71046874 TTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGCC
1 TTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCC
* * **
71046914 TTCGGGTCTTAGCCCGGATATAG-CAACTCGCAGGAATGCC
1 TTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGCC
* * * *
71046954 TTC-GGATCTTAGTCCAGTTATAGTCACCTAGCACAAAAGCC
1 TTCGGGA-CTTAGCCCGGATATAGTCA-CTAGCACAAATGCC
71046995 TTCGGGACTTAGCCCGGATAT
1 TTCGGGACTTAGCCCGGATAT
71047016 CATTCGAATA
Statistics
Matches: 147, Mismatches: 27, Indels: 13
0.79 0.14 0.07
Matches are distributed among these distances:
38 10 0.07
39 18 0.12
40 91 0.62
41 25 0.17
42 3 0.02
ACGTcount: A:0.24, C:0.26, G:0.25, T:0.25
Consensus pattern (40 bp):
TTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCC
Found at i:71049247 original size:40 final size:40
Alignment explanation
Indices: 71049203--71049462 Score: 307
Period size: 40 Copynumber: 6.5 Consensus size: 40
71049193 TGATACTTGA
*
71049203 GGAATTGTATCCGGGCTTAAAGACCCCCAGGCTATATGCT
1 GGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATATGCT
* * *
71049243 GGAATTGTATCTGTGCTTAAAGACTCGCAGGCT-TCATGCT
1 GGAATTGTATCCGGGCTTAAAGACCCGCAGGCTAT-ATGCT
* **
71049283 AGAATTGTATCCGGGCTTAAAGACCTACAGGCTATATGCT
1 GGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATATGCT
71049323 GGAA-TGTTATCCGGGCTTAAAGACCCGCAGGCTATATGCT
1 GGAATTG-TATCCGGGCTTAAAGACCCGCAGGCTATATGCT
* *
71049363 AGAA-TGCTATCCGGGCTTAAAGAACCGCAGGCT-TCATGCT
1 GGAATTG-TATCCGGGCTTAAAGACCCGCAGGCTAT-ATGCT
**
71049403 GGAATTGTATCCGGGCTTAAAGACTTGCAGGCTACTA-GCT
1 GGAATTGTATCCGGGCTTAAAGACCCGCAGGCTA-TATGCT
* * *
71049443 GGTATTATAT-CGGGTTTAAA
1 GGAATTGTATCCGGGCTTAAA
71049463 TTCCCGTAGG
Statistics
Matches: 190, Mismatches: 23, Indels: 15
0.83 0.10 0.07
Matches are distributed among these distances:
39 13 0.07
40 172 0.91
41 4 0.02
42 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (40 bp):
GGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATATGCT
Found at i:71049416 original size:120 final size:120
Alignment explanation
Indices: 71049210--71049444 Score: 359
Period size: 120 Copynumber: 2.0 Consensus size: 120
71049200 TGAGGAATTG
* * *
71049210 TATCCGGGCTTAAAGACCCCCAGGCTATATGCTGGAATTGTATCTGTGCTTAAAGACTCGCAGGC
1 TATCCGGGCTTAAAGACCCCCAGGCTATATGCTAGAATTGTATCCGGGCTTAAAGACTCGCAGGC
71049275 TTCATGCTAGAATTGTATCCGGGCTTAAAGACCTACAGGCTA-TATGCTGGAATGT
66 TTCATGCTAGAATTGTATCCGGGCTTAAAGACCTACAGGCTACTA-GCTGGAATGT
*
71049330 TATCCGGGCTTAAAGACCCGCAGGCTATATGCTAGAA-TGCTATCCGGGCTTAAAGAAC-CGCAG
1 TATCCGGGCTTAAAGACCCCCAGGCTATATGCTAGAATTG-TATCCGGGCTTAAAG-ACTCGCAG
* * *
71049393 GCTTCATGCTGGAATTGTATCCGGGCTTAAAGACTTGCAGGCTACTAGCTGG
64 GCTTCATGCTAGAATTGTATCCGGGCTTAAAGACCTACAGGCTACTAGCTGG
71049445 TATTATATCG
Statistics
Matches: 105, Mismatches: 7, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
119 2 0.02
120 99 0.94
121 4 0.04
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (120 bp):
TATCCGGGCTTAAAGACCCCCAGGCTATATGCTAGAATTGTATCCGGGCTTAAAGACTCGCAGGC
TTCATGCTAGAATTGTATCCGGGCTTAAAGACCTACAGGCTACTAGCTGGAATGT
Found at i:71050356 original size:30 final size:30
Alignment explanation
Indices: 71050320--71050379 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
71050310 ATTCCGAGCC
*
71050320 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
71050350 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
71050380 CGTATTAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:71067063 original size:40 final size:40
Alignment explanation
Indices: 71067018--71067181 Score: 204
Period size: 40 Copynumber: 4.1 Consensus size: 40
71067008 CGGAATACAA
*
71067018 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* * * *
71067058 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* *
71067098 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* ** * *
71067138 CCGGATGTAGTCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTTGCACGAA-TGCCTTCGGGTCTTAGC
71067178 CCGG
1 CCGG
71067182 TTAAAATTAC
Statistics
Matches: 107, Mismatches: 16, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
39 2 0.02
40 105 0.98
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
Found at i:71067194 original size:40 final size:39
Alignment explanation
Indices: 71067034--71067224 Score: 168
Period size: 40 Copynumber: 4.8 Consensus size: 39
71067024 ATAACCACAT
* ** *
71067034 GCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATA-AAATACTA
* * *
71067074 GCACAAATGCCTTCGGGTATTAGCCCGGATTTAACA-ACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGA--TAAAATACTA
* ** *
71067114 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAAT-ACTA
* * *
71067154 GCACAATTGCCTTCGGGTCTTAACCCGGTTAAAATTACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAA-TACTA
* * * *
71067194 GCATAAATGTCTTCGGGACTTAGCTCGGATA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATA
71067225 TCATTCAATT
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
38 1 0.01
40 116 0.96
41 2 0.02
42 2 0.02
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.27
Consensus pattern (39 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATACTA
Found at i:71067208 original size:80 final size:80
Alignment explanation
Indices: 71067034--71067223 Score: 199
Period size: 80 Copynumber: 2.4 Consensus size: 80
71067024 ATAACCACAT
* * *
71067034 GCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAATGCCTTCGGGTATTAAC
* *
71067098 CCGGATTTAACAACTT
66 CCGGA-TTAAAAACTA
* * * *
71067114 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAATTGCCTTCGGGTCTTAA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAATGCCTTCGGGTATTAA
71067177 CCCGG-TTAAAATTACTA
65 CCCGGATTAAAA--ACTA
* * * *
71067194 GCATAAATGTCTTCGGGACTTAGCTCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
71067224 ATCATTCAAT
Statistics
Matches: 94, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
78 5 0.05
80 85 0.90
81 1 0.01
82 3 0.03
ACGTcount: A:0.24, C:0.25, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAATGCCTTCGGGTATTAAC
CCGGATTAAAAACTA
Found at i:71071609 original size:79 final size:80
Alignment explanation
Indices: 71071508--71071692 Score: 207
Period size: 79 Copynumber: 2.3 Consensus size: 80
71071498 ACGACTCGCT
* ** * *
71071508 CAAATGCCTTCGAGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCG-GGCTTAGCCCGGATT-TAGTAACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
71071571 GGGTTTAGTAACTT-GCA
63 GGATATAGTAACTTAGCA
* **
71071588 CAAATGCCTTCGGGCTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAGTCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGGA
*
71071653 TATAGTCACTTAGCA
66 TATAGTAACTTAGCA
71071668 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
71071693 CATCATTCGA
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.61
80 32 0.36
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (80 bp):
CAAATGCCTTCGGGCTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGGA
TATAGTAACTTAGCA
Found at i:71071622 original size:39 final size:40
Alignment explanation
Indices: 71071508--71071692 Score: 180
Period size: 40 Copynumber: 4.7 Consensus size: 40
71071498 ACGACTCGCT
* ** * *
71071508 CAAATGCCTTCGAGACGAAGCCCGG-TTATAGTGACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTTGCA
* * *
71071548 CGAATGCCTTCGGGACTTAACCCGGGTTTAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTTGCA
* *
71071588 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTTGCA
* * * * *
71071627 CGAATGCCTTC-GGATCCTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTT-GCA
71071668 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
71071693 CATCATTCGA
Statistics
Matches: 118, Mismatches: 22, Indels: 10
0.79 0.15 0.07
Matches are distributed among these distances:
38 2 0.02
39 31 0.26
40 74 0.63
41 11 0.09
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTTGCA
Found at i:71073694 original size:40 final size:40
Alignment explanation
Indices: 71073453--71073686 Score: 339
Period size: 40 Copynumber: 5.8 Consensus size: 40
71073443 TGATACTTGA
*
71073453 GGAATTGTATCCGGGCTTAAAGACCCGTAGGCTATATGCT
1 GGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATATGCT
***
71073493 GGAATTGTATCCGGGCTTAAAGACCCGCAGGCTGCGTGCT
1 GGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATATGCT
* *
71073533 GGAATTGTATCCGGACTTAAAGACCCACAGGCTATATGCT
1 GGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATATGCT
*
71073573 GGAA-TGTTATTCGGGCTTAAAGACCCGCAGGCTATATGCT
1 GGAATTG-TATCCGGGCTTAAAGACCCGCAGGCTATATGCT
*
71073613 GGAA-TGTTATCTGGGCTTAAAGACCCGCAGGCT-TCATGCT
1 GGAATTG-TATCCGGGCTTAAAGACCCGCAGGCTAT-ATGCT
*
71073653 GGAATTGTATCCGGGCTTAAAGACCCGTAGGCTA
1 GGAATTGTATCCGGGCTTAAAGACCCGCAGGCTA
71073687 CGAGCTGGTA
Statistics
Matches: 174, Mismatches: 16, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
39 3 0.02
40 169 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
GGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATATGCT
Found at i:71074421 original size:35 final size:35
Alignment explanation
Indices: 71074382--71074453 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
71074372 GGTGATAGTT
71074382 ATGTTTTGTATTGTAAATATTTTGGCCATATGAAA
1 ATGTTTTGTATTGTAAATATTTTGGCCATATGAAA
71074417 ATGTTTTGTATTGTAAATATTTTGGCCATATGAAA
1 ATGTTTTGTATTGTAAATATTTTGGCCATATGAAA
71074452 AT
1 AT
71074454 AGCATTTATA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.32, C:0.06, G:0.17, T:0.46
Consensus pattern (35 bp):
ATGTTTTGTATTGTAAATATTTTGGCCATATGAAA
Found at i:71074423 original size:19 final size:19
Alignment explanation
Indices: 71074396--71074454 Score: 70
Period size: 19 Copynumber: 3.3 Consensus size: 19
71074386 TTTGTATTGT
71074396 AAATATTTTGGCCATATGA
1 AAATATTTTGGCCATATGA
* * *
71074415 AAATGTTTT-G-TAT-TGT
1 AAATATTTTGGCCATATGA
71074431 AAATATTTTGGCCATATGA
1 AAATATTTTGGCCATATGA
71074450 AAATA
1 AAATA
71074455 GCATTTATAA
Statistics
Matches: 31, Mismatches: 6, Indels: 6
0.72 0.14 0.14
Matches are distributed among these distances:
16 10 0.32
17 3 0.10
18 3 0.10
19 15 0.48
ACGTcount: A:0.37, C:0.07, G:0.15, T:0.41
Consensus pattern (19 bp):
AAATATTTTGGCCATATGA
Found at i:71074439 original size:16 final size:16
Alignment explanation
Indices: 71074385--71074440 Score: 58
Period size: 16 Copynumber: 3.3 Consensus size: 16
71074375 GATAGTTATG
71074385 TTTTGTATTGTAAATA
1 TTTTGTATTGTAAATA
* * *
71074401 TTTTGGCCATATGAAAATG
1 TTTT-G-TAT-TGTAAATA
71074420 TTTTGTATTGTAAATA
1 TTTTGTATTGTAAATA
71074436 TTTTG
1 TTTTG
71074441 GCCATATGAA
Statistics
Matches: 31, Mismatches: 6, Indels: 6
0.72 0.14 0.14
Matches are distributed among these distances:
16 15 0.48
17 3 0.10
18 3 0.10
19 10 0.32
ACGTcount: A:0.29, C:0.04, G:0.16, T:0.52
Consensus pattern (16 bp):
TTTTGTATTGTAAATA
Found at i:71077662 original size:40 final size:39
Alignment explanation
Indices: 71077495--71077664 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
71077485 AGAAATTGAA
*
71077495 TGATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
71077534 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
71077574 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
71077614 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
71077654 TGATATCCGGG
1 TGATATCCGGG
71077665 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 16, Indels: 15
0.78 0.12 0.11
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 18 0.17
40 81 0.76
41 2 0.02
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:71085773 original size:40 final size:39
Alignment explanation
Indices: 71085605--71085775 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
71085595 AGAAATTGAA
* *
71085605 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
71085645 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
71085685 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
71085725 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
71085765 TGATATCCGGG
1 TGATATCCGGG
71085776 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:71094499 original size:21 final size:22
Alignment explanation
Indices: 71094456--71094499 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 22
71094446 CTTTTGAACA
*
71094456 TCGTAACTCGATCGATTCATGC
1 TCGTAACACGATCGATTCATGC
71094478 TCGTAACAC-ATC-ATTCCATGC
1 TCGTAACACGATCGATT-CATGC
71094499 T
1 T
71094500 AAATTAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 3 0.15
21 9 0.45
22 8 0.40
ACGTcount: A:0.25, C:0.30, G:0.14, T:0.32
Consensus pattern (22 bp):
TCGTAACACGATCGATTCATGC
Found at i:71095656 original size:19 final size:19
Alignment explanation
Indices: 71095634--71095670 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
71095624 TCATACATGT
71095634 GTTTATTACCTATACTCAC
1 GTTTATTACCTATACTCAC
*
71095653 GTTTATTATCTATACTCA
1 GTTTATTACCTATACTCA
71095671 TGTTACACCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.27, C:0.22, G:0.05, T:0.46
Consensus pattern (19 bp):
GTTTATTACCTATACTCAC
Found at i:71097222 original size:101 final size:100
Alignment explanation
Indices: 71097023--71097250 Score: 258
Period size: 101 Copynumber: 2.3 Consensus size: 100
71097013 CTGGTACGCA
* * * * *
71097023 TAGTAGCCTGCACTTAGTACTACACAAGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAAACAATCGGGTACACATAGTAGCCTGCACTT
** ** * *
71097088 AGTACTACACACGTGATTTAACCATCTGATACACG
66 AGTACTACACACGCAACCTAACAATCGGATACACG
* * * *
71097123 TAGTAGCCTACACTTAGTACTACACACGTGATCGAAACTATCGGGTACACATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAAACAATCGGGTACACATAGTAGCCTGCACT
* * * * *
71097188 TAGTACTATATATGCAACCTAAGAATCGGGTACACG
65 TAGTACTACACACGCAACCTAACAATCGGATACACG
*
71097224 TAGTAGCCTGCATTTAGTACTACACAC
1 TAGTAGCCTGCACTTAGTACTACACAC
71097251 TTGACCTAAG
Statistics
Matches: 105, Mismatches: 22, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
100 28 0.27
101 77 0.73
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (100 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAAACAATCGGGTACACATAGTAGCCTGCACTT
AGTACTACACACGCAACCTAACAATCGGATACACG
Found at i:71097261 original size:50 final size:50
Alignment explanation
Indices: 71097023--71097259 Score: 267
Period size: 50 Copynumber: 4.7 Consensus size: 50
71097013 CTGGTACGCA
* * * *
71097023 TAGTAGCCTGCACTTAGTACTACACAAGCGACCTATCAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCGGGTACACG
** * * *
71097073 TAGTAGCCTGCACTTAGTACTACACACGTGATTTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCGGGTACACG
* ** * *
71097123 TAGTAGCCTACACTTAGTACTACACACGTGATCGAAACTATCGGGTACACA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCTAACAATCGGGTACACG
* * * ** *
71097174 TAGTAGCCTGCACTTAGTACTATATATGCAACCTAAGAATCGGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCGGGTACACG
* *
71097224 TAGTAGCCTGCATTTAGTACTACACACTTGACCTAA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
71097260 GACTATCTTA
Statistics
Matches: 153, Mismatches: 33, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
50 116 0.76
51 37 0.24
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.26
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCGGGTACACG
Found at i:71100459 original size:2 final size:2
Alignment explanation
Indices: 71100452--71100483 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
71100442 GTACCTTCCC
71100452 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
71100484 CAAACAGAGC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:71103829 original size:50 final size:50
Alignment explanation
Indices: 71103754--71104134 Score: 295
Period size: 50 Copynumber: 7.6 Consensus size: 50
71103744 CTGGTACGCA
* *
71103754 TAGTAGCCTGCACATAGTACTACACATGCGACCTATCAATCTAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTAGTACACG
* * * * * * *
71103804 TAGTAGCCTGTACTTAGTATTACACACGTGACTTAACCATCT-GATACATG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTAG-TACACG
* * **
71103854 TAGTAGCTTGCACTTAGTACTACACATGCGACCTATCAATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTAGTACACG
* * * * * *
71103904 TAGTAGCCTACACTTAGTACTGCACACGTGACCTAACCAT-TTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTAG-TACACG
* * * * ** * *
71103954 TAGTAGCCTACACTTATTACTGCAC-TCGTGATCGAAACTATC-AGGTACACA
1 TAGTAGCCTGCACTTAGTACTACACAT-GCGA-CCTAACAATCTA-GTACACG
** *
71104005 TAGTAGCCTATACTTAGTACTACACATGCGACCTAACAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTAGTACACG
* * * * * * * *
71104055 TAGTAACCTGTACTTAGTACTACACACGTGAACTAAAACTATCTTA-AACACA
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCT--AACAATC-TAGTACACG
* *
71104107 TTGTAGCCTGCACATAGTACTACACATG
1 TAGTAGCCTGCACTTAGTACTACACATG
71104135 TGTTCTCACA
Statistics
Matches: 261, Mismatches: 58, Indels: 22
0.77 0.17 0.06
Matches are distributed among these distances:
49 2 0.01
50 186 0.71
51 37 0.14
52 35 0.13
53 1 0.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.27
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTAGTACACG
Found at i:71103888 original size:100 final size:99
Alignment explanation
Indices: 71103754--71104080 Score: 377
Period size: 100 Copynumber: 3.3 Consensus size: 99
71103744 CTGGTACGCA
* *
71103754 TAGTAGCCTGCACATAGTACTACACATGCGACCTATCAATCTAGTACACGTAGTAGCCTGTACTT
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATC-AGTACACGTAGTAGCCTATACTT
* * *
71103819 AGTATTACACACGTGACTTAACCATCTGATACATG
65 AGTACTACACACGTGACCTAACCATCTGATACACG
* * *
71103854 TAGTAGCTTGCACTTAGTACTACACATGCGACCTATCAATCCGGTACACGTAGTAGCCTACACTT
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAAT-CAGTACACGTAGTAGCCTATACTT
* *
71103919 AGTACTGCACACGTGACCTAACCATTTGATACACG
65 AGTACTACACACGTGACCTAACCATCTGATACACG
* * * * ** * * *
71103954 TAGTAGCCTACACTTATTACTGCAC-TCGTGATCGAAACTATCAGGTACACATAGTAGCCTATAC
1 TAGTAGCCTGCACTTAGTACTACACAT-GCGA-CCTATCAATCA-GTACACGTAGTAGCCTATAC
* * * *
71104018 TTAGTACTACACATGCGACCTAACAATCTGGTACACG
63 TTAGTACTACACACGTGACCTAACCATCTGATACACG
* *
71104055 TAGTAACCTGTACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
71104081 CGTGAACTAA
Statistics
Matches: 189, Mismatches: 33, Indels: 8
0.82 0.14 0.03
Matches are distributed among these distances:
99 1 0.01
100 113 0.60
101 75 0.40
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCAGTACACGTAGTAGCCTATACTTA
GTACTACACACGTGACCTAACCATCTGATACACG
Found at i:71104516 original size:19 final size:20
Alignment explanation
Indices: 71104488--71104534 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
71104478 AAGAACATGT
71104488 TATATCATCAAAATAATCACA
1 TATAT-ATCAAAATAATCACA
* *
71104509 TA-ATATCAAATTATTCACA
1 TATATATCAAAATAATCACA
71104528 TATATAT
1 TATATAT
71104535 ACTTACAACT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.49, C:0.15, G:0.00, T:0.36
Consensus pattern (20 bp):
TATATATCAAAATAATCACA
Found at i:71120185 original size:14 final size:15
Alignment explanation
Indices: 71120160--71120191 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
71120150 CAAGGATATG
71120160 TTGAGATTTGTATTC
1 TTGAGATTTGTATTC
71120175 TTGAG-TTTGTATTC
1 TTGAGATTTGTATTC
71120189 TTG
1 TTG
71120192 GTTACGTAGG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 12 0.71
15 5 0.29
ACGTcount: A:0.16, C:0.06, G:0.22, T:0.56
Consensus pattern (15 bp):
TTGAGATTTGTATTC
Found at i:71121511 original size:20 final size:20
Alignment explanation
Indices: 71121487--71121541 Score: 92
Period size: 20 Copynumber: 2.8 Consensus size: 20
71121477 CAGTACCGGT
71121487 ACAAAGCCATCAATAGTGGC
1 ACAAAGCCATCAATAGTGGC
*
71121507 CCAAAGCCATCAATAGTGGC
1 ACAAAGCCATCAATAGTGGC
*
71121527 ACAAAGCCATAAATA
1 ACAAAGCCATCAATA
71121542 TCGCAGCAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.44, C:0.25, G:0.16, T:0.15
Consensus pattern (20 bp):
ACAAAGCCATCAATAGTGGC
Found at i:71124223 original size:29 final size:29
Alignment explanation
Indices: 71124190--71124292 Score: 152
Period size: 29 Copynumber: 3.6 Consensus size: 29
71124180 GTGACGAGAT
71124190 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
71124219 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
71124248 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
71124277 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
71124293 AGCTCGGAGG
Statistics
Matches: 67, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 67 1.00
ACGTcount: A:0.27, C:0.16, G:0.33, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:71132070 original size:29 final size:29
Alignment explanation
Indices: 71132037--71132138 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
71132027 TGACGAGATC
71132037 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
71132066 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
** * *
71132095 GGCACTAAGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
**
71132124 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
71132139 AGCTCGGAGG
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.27, C:0.16, G:0.33, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAATATAT
Found at i:71139289 original size:29 final size:29
Alignment explanation
Indices: 71139255--71139386 Score: 137
Period size: 29 Copynumber: 4.6 Consensus size: 29
71139245 TAATCGATCA
*
71139255 CGCACACTTAGTGCCAT-GTGATTT-AAGCT
1 CGCACACTTAGTGCCATACT--TTTCAAGCT
* * **
71139284 CGCACACATAGTGCCGTATA-ATTT-AAATT
1 CGCACACTTAGTGCC--ATACTTTTCAAGCT
71139313 CGCACACTTAGTGCCATACTTTTCAAGCT
1 CGCACACTTAGTGCCATACTTTTCAAGCT
*
71139342 TGCACACTTAGTGCCATACTTTTCAAGCT
1 CGCACACTTAGTGCCATACTTTTCAAGCT
*
71139371 TGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
71139387 ATCTTGTCAC
Statistics
Matches: 89, Mismatches: 9, Indels: 10
0.82 0.08 0.09
Matches are distributed among these distances:
27 3 0.03
28 3 0.03
29 81 0.91
31 2 0.02
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.31
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACTTTTCAAGCT
Found at i:71147233 original size:29 final size:29
Alignment explanation
Indices: 71147199--71147330 Score: 137
Period size: 29 Copynumber: 4.6 Consensus size: 29
71147189 TAATCGATCA
*
71147199 CGCACACTTAGTGCCAT-GTGATTT-AAGCT
1 CGCACACTTAGTGCCATACT--TTTCAAGCT
* * **
71147228 CGCACACATAGTGCCGTATA-ATTT-AAATT
1 CGCACACTTAGTGCC--ATACTTTTCAAGCT
71147257 CGCACACTTAGTGCCATACTTTTCAAGCT
1 CGCACACTTAGTGCCATACTTTTCAAGCT
*
71147286 TGCACACTTAGTGCCATACTTTTCAAGCT
1 CGCACACTTAGTGCCATACTTTTCAAGCT
*
71147315 TGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
71147331 ATCTTGTCAC
Statistics
Matches: 89, Mismatches: 9, Indels: 10
0.82 0.08 0.09
Matches are distributed among these distances:
27 3 0.03
28 3 0.03
29 81 0.91
31 2 0.02
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.31
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACTTTTCAAGCT
Found at i:71150684 original size:35 final size:35
Alignment explanation
Indices: 71150635--71150704 Score: 122
Period size: 35 Copynumber: 2.0 Consensus size: 35
71150625 GTAATATAGA
* *
71150635 TTGTACAATGAATACTTGGAAGTATTTCGAGGATC
1 TTGTACAATAAATACTTAGAAGTATTTCGAGGATC
71150670 TTGTACAATAAATACTTAGAAGTATTTCGAGGATC
1 TTGTACAATAAATACTTAGAAGTATTTCGAGGATC
71150705 GTACCCAAGG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.34, C:0.11, G:0.20, T:0.34
Consensus pattern (35 bp):
TTGTACAATAAATACTTAGAAGTATTTCGAGGATC
Found at i:71151825 original size:22 final size:22
Alignment explanation
Indices: 71151797--71151850 Score: 81
Period size: 22 Copynumber: 2.5 Consensus size: 22
71151787 ACAGCTCAAG
*
71151797 GCCGTAAACAGGACATCACATA
1 GCCGTAAACAGGACAACACATA
* *
71151819 GCTGTAAACAGGACAACACGTA
1 GCCGTAAACAGGACAACACATA
71151841 GCCGTAAACA
1 GCCGTAAACA
71151851 TCACAGCAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.41, C:0.26, G:0.20, T:0.13
Consensus pattern (22 bp):
GCCGTAAACAGGACAACACATA
Found at i:71152334 original size:41 final size:41
Alignment explanation
Indices: 71152259--71152422 Score: 213
Period size: 41 Copynumber: 4.0 Consensus size: 41
71152249 TAAAAGCCAC
* * *
71152259 CGGTGGATCCAC-GATCGTCAAGCAGCCATACGATCCTTAAT
1 CGGTGGATCCACAG-TCGTCAAGCAACCATGCGATCCTCAAT
* * *
71152300 CGGTGGATCCACAGTCGTTAACCAACAATGCGATCCTCAAT
1 CGGTGGATCCACAGTCGTCAAGCAACCATGCGATCCTCAAT
** * *
71152341 CGGTGGATCCATGGTCGTCAAGCAACCATACAATCCTCAAT
1 CGGTGGATCCACAGTCGTCAAGCAACCATGCGATCCTCAAT
*
71152382 CGGTGGATCCACAGTCGTCAAGCAACCATGTGATCCTCAAT
1 CGGTGGATCCACAGTCGTCAAGCAACCATGCGATCCTCAAT
71152423 TTCTTCCTCC
Statistics
Matches: 104, Mismatches: 18, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
41 103 0.99
42 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (41 bp):
CGGTGGATCCACAGTCGTCAAGCAACCATGCGATCCTCAAT
Found at i:71152396 original size:82 final size:82
Alignment explanation
Indices: 71152259--71152422 Score: 247
Period size: 82 Copynumber: 2.0 Consensus size: 82
71152249 TAAAAGCCAC
* * * *
71152259 CGGTGGATCCACGATCGTCAAGCAGCCATACGATCCTTAATCGGTGGATCCACAGTCGTTAACCA
1 CGGTGGATCCACGATCGTCAAGCAACCATACAATCCTCAATCGGTGGATCCACAGTCGTCAACCA
71152324 ACAATGCGATCCTCAAT
66 ACAATGCGATCCTCAAT
* * *
71152341 CGGTGGATCCATGGTCGTCAAGCAACCATACAATCCTCAATCGGTGGATCCACAGTCGTCAAGCA
1 CGGTGGATCCACGATCGTCAAGCAACCATACAATCCTCAATCGGTGGATCCACAGTCGTCAACCA
* *
71152406 ACCATGTGATCCTCAAT
66 ACAATGCGATCCTCAAT
71152423 TTCTTCCTCC
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
82 73 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (82 bp):
CGGTGGATCCACGATCGTCAAGCAACCATACAATCCTCAATCGGTGGATCCACAGTCGTCAACCA
ACAATGCGATCCTCAAT
Found at i:71152711 original size:27 final size:28
Alignment explanation
Indices: 71152681--71152787 Score: 123
Period size: 27 Copynumber: 4.0 Consensus size: 28
71152671 GGTAAATCTA
*
71152681 CAAACCAAGGTTATTT-TGATAATTTTG
1 CAAACCAAGGGTATTTCTGATAATTTTG
*
71152708 CAAACCAATGGTATTTCTG-TAATTTTG
1 CAAACCAAGGGTATTTCTGATAATTTTG
* * *
71152735 TAAATCAAGGGTATTTCT-ATAATTTTC
1 CAAACCAAGGGTATTTCTGATAATTTTG
* *
71152762 CAAATCAAGGGTATTTCAG-TAATTTT
1 CAAACCAAGGGTATTTCTGATAATTTT
71152788 CTAAATCAGG
Statistics
Matches: 69, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
27 67 0.97
28 2 0.03
ACGTcount: A:0.33, C:0.12, G:0.14, T:0.41
Consensus pattern (28 bp):
CAAACCAAGGGTATTTCTGATAATTTTG
Found at i:71152750 original size:54 final size:54
Alignment explanation
Indices: 71152686--71152814 Score: 161
Period size: 54 Copynumber: 2.4 Consensus size: 54
71152676 ATCTACAAAC
* * * * *
71152686 CAAGGTTATTTTGATAATTTTGCAAACCAATGGTATTTCTGTAATTTTGTAAAT
1 CAAGGGTATTTTGATAATTTTCCAAACCAAGGGTATTTCAGTAATTTTCTAAAT
*
71152740 CAAGGGTATTTCT-ATAATTTTCCAAATCAAGGGTATTTCAGTAATTTTCTAAAT
1 CAAGGGTATTT-TGATAATTTTCCAAACCAAGGGTATTTCAGTAATTTTCTAAAT
* * *
71152794 CAGGGGTGTTTTGGTAATTTT
1 CAAGGGTATTTTGATAATTTT
71152815 ACAGATTGAG
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
53 1 0.02
54 62 0.97
55 1 0.02
ACGTcount: A:0.29, C:0.10, G:0.17, T:0.43
Consensus pattern (54 bp):
CAAGGGTATTTTGATAATTTTCCAAACCAAGGGTATTTCAGTAATTTTCTAAAT
Found at i:71152788 original size:27 final size:27
Alignment explanation
Indices: 71152700--71152841 Score: 115
Period size: 27 Copynumber: 5.3 Consensus size: 27
71152690 GTTATTTTGA
* * * *
71152700 TAATTTTGCAAACCAATGGTATTTCTG
1 TAATTTTCCAAATCAAGGGTATTTCAG
**
71152727 TAATTTTGTAAATCAAGGGTATTTCTA-
1 TAATTTTCCAAATCAAGGGTATTTC-AG
71152754 TAATTTTCCAAATCAAGGGTATTTCAG
1 TAATTTTCCAAATCAAGGGTATTTCAG
* * * **
71152781 TAATTTTCTAAATCAGGGGTGTTTTGG
1 TAATTTTCCAAATCAAGGGTATTTCAG
* * ** **
71152808 TAATTTTACAGATTGAGGGTATTTTGG
1 TAATTTTCCAAATCAAGGGTATTTCAG
71152835 TAATTTT
1 TAATTTT
71152842 AGAAGGACCC
Statistics
Matches: 95, Mismatches: 18, Indels: 4
0.81 0.15 0.03
Matches are distributed among these distances:
26 1 0.01
27 94 0.99
ACGTcount: A:0.29, C:0.09, G:0.18, T:0.44
Consensus pattern (27 bp):
TAATTTTCCAAATCAAGGGTATTTCAG
Found at i:71152827 original size:54 final size:54
Alignment explanation
Indices: 71152686--71152841 Score: 145
Period size: 54 Copynumber: 2.9 Consensus size: 54
71152676 ATCTACAAAC
* * * * * *
71152686 CAAGGTTATTT-TGATAATTTTGCAAACCAATGGTATTTCTGTAATTTTGTAAAT
1 CAAGGGTATTTCT-ATAATTTTACAAATCAAGGGTATTTCAGTAATTTTCTAAAT
*
71152740 CAAGGGTATTTCTATAATTTTCCAAATCAAGGGTATTTCAGTAATTTTCTAAAT
1 CAAGGGTATTTCTATAATTTTACAAATCAAGGGTATTTCAGTAATTTTCTAAAT
* * * * ** **
71152794 CAGGGGTGTTT-TGGTAATTTTACAGATTGAGGGTATTTTGGTAATTTT
1 CAAGGGTATTTCT-ATAATTTTACAAATCAAGGGTATTTCAGTAATTTT
71152842 AGAAGGACCC
Statistics
Matches: 85, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
53 1 0.01
54 83 0.98
55 1 0.01
ACGTcount: A:0.29, C:0.09, G:0.19, T:0.44
Consensus pattern (54 bp):
CAAGGGTATTTCTATAATTTTACAAATCAAGGGTATTTCAGTAATTTTCTAAAT
Found at i:71153676 original size:27 final size:26
Alignment explanation
Indices: 71153598--71153691 Score: 98
Period size: 27 Copynumber: 3.5 Consensus size: 26
71153588 TAATCGATTC
*
71153598 AATCAGGGATATTTTGGTAATTTTACA
1 AATCAGGG-TATTTTGGTAATTTTGCA
* * *
71153625 AAGCAGGGGTATTTTGATAATTTTGCT
1 AATCA-GGGTATTTTGGTAATTTTGCA
*
71153652 AATCGAGGGTATTTTGGTAATTTTGTA
1 AATC-AGGGTATTTTGGTAATTTTGCA
*
71153679 AACCAAGGGTATT
1 AATC-AGGGTATT
71153692 CAGTAATTCT
Statistics
Matches: 55, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
27 51 0.93
28 4 0.07
ACGTcount: A:0.30, C:0.07, G:0.23, T:0.39
Consensus pattern (26 bp):
AATCAGGGTATTTTGGTAATTTTGCA
Found at i:71153725 original size:27 final size:27
Alignment explanation
Indices: 71153690--71153764 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 27
71153680 ACCAAGGGTA
71153690 TTCAGTAATTCTA-CCTTACAGGGGCAT
1 TTCAGTAATTCTATCC-TACAGGGGCAT
* * *
71153717 TTCAATAATTCTATCCTATAGGGGTAT
1 TTCAGTAATTCTATCCTACAGGGGCAT
* *
71153744 TTCAGTAATACTAGCCTACAG
1 TTCAGTAATTCTATCCTACAG
71153765 ATATGAGATT
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
27 38 0.95
28 2 0.05
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.35
Consensus pattern (27 bp):
TTCAGTAATTCTATCCTACAGGGGCAT
Found at i:71155485 original size:32 final size:32
Alignment explanation
Indices: 71155442--71155506 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
71155432 CAGACAAATA
*
71155442 TAACCCTGAAATACTTGGGCAGCACGTTGGCC
1 TAACCCCGAAATACTTGGGCAGCACGTTGGCC
71155474 TAACCCCGAAATACTTGGGCAGCACGTTGGCC
1 TAACCCCGAAATACTTGGGCAGCACGTTGGCC
71155506 T
1 T
71155507 TGTGTTATTC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.22
Consensus pattern (32 bp):
TAACCCCGAAATACTTGGGCAGCACGTTGGCC
Found at i:71160093 original size:20 final size:20
Alignment explanation
Indices: 71160056--71160094 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
71160046 AAACACGCGA
**
71160056 TTAAAAAGAAAATTTAAAAT
1 TTAAAAAGAAAAACTAAAAT
*
71160076 TTAAAAATAAAAACTAAAA
1 TTAAAAAGAAAAACTAAAA
71160095 ACTAAAAGCA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.69, C:0.03, G:0.03, T:0.26
Consensus pattern (20 bp):
TTAAAAAGAAAAACTAAAAT
Found at i:71161750 original size:44 final size:42
Alignment explanation
Indices: 71161679--71161837 Score: 124
Period size: 43 Copynumber: 3.7 Consensus size: 42
71161669 TAGATGTTTC
* * **
71161679 CGTGTAAGACCACGTCTGGGATGTTGGCATCG-ACTTATGATTT
1 CGTGTAAGACCATGTCTAGGACATTGGCATCGTA-TT-TGATTT
* *
71161722 ATGTGTAAGACCATGTCTATGACATTGGCATCGTATTTGATTT
1 -CGTGTAAGACCATGTCTAGGACATTGGCATCGTATTTGATTT
* * * *
71161765 CGTGTAAGACCCTGTCTGGGACAGTGGCATCAATATTTG-TTT
1 CGTGTAAGACCATGTCTAGGACATTGGCATC-GTATTTGATTT
* * * * *
71161807 ACATCTAAGACCACGTCTGGGACGTTGGCAT
1 -CGTGTAAGACCATGTCTAGGACATTGGCAT
71161838 TGTAGGAGCT
Statistics
Matches: 94, Mismatches: 18, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
42 29 0.31
43 36 0.38
44 28 0.30
45 1 0.01
ACGTcount: A:0.23, C:0.19, G:0.25, T:0.33
Consensus pattern (42 bp):
CGTGTAAGACCATGTCTAGGACATTGGCATCGTATTTGATTT
Found at i:71161781 original size:42 final size:44
Alignment explanation
Indices: 71161679--71161795 Score: 123
Period size: 44 Copynumber: 2.7 Consensus size: 44
71161669 TAGATGTTTC
* * **
71161679 CGTGTAAGACCACGTCTGGGATGTTGGCATCGACTTATGATTTA
1 CGTGTAAGACCATGTCTAGGACATTGGCATCGACTTATGATTTA
* *
71161723 TGTGTAAGACCATGTCTATGACATTGGCATCGTA-TT-TGATTT-
1 CGTGTAAGACCATGTCTAGGACATTGGCATCG-ACTTATGATTTA
* * *
71161765 CGTGTAAGACCCTGTCTGGGACAGTGGCATC
1 CGTGTAAGACCATGTCTAGGACATTGGCATC
71161796 AATATTTGTT
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
42 26 0.43
43 6 0.10
44 28 0.46
45 1 0.02
ACGTcount: A:0.22, C:0.19, G:0.26, T:0.32
Consensus pattern (44 bp):
CGTGTAAGACCATGTCTAGGACATTGGCATCGACTTATGATTTA
Found at i:71162025 original size:50 final size:50
Alignment explanation
Indices: 71161950--71162053 Score: 199
Period size: 50 Copynumber: 2.1 Consensus size: 50
71161940 TACGTTCGAA
*
71161950 ATGTATACTATGTTTGAGAATAAAAGGTAAGTGTATGTACAAGTGATGAT
1 ATGTATACTATGTTTGAGAATAAAAGGTAAGTATATGTACAAGTGATGAT
71162000 ATGTATACTATGTTTGAGAATAAAAGGTAAGTATATGTACAAGTGATGAT
1 ATGTATACTATGTTTGAGAATAAAAGGTAAGTATATGTACAAGTGATGAT
71162050 ATGT
1 ATGT
71162054 GTTATAAGTA
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 53 1.00
ACGTcount: A:0.38, C:0.04, G:0.23, T:0.35
Consensus pattern (50 bp):
ATGTATACTATGTTTGAGAATAAAAGGTAAGTATATGTACAAGTGATGAT
Found at i:71162068 original size:50 final size:50
Alignment explanation
Indices: 71161950--71162069 Score: 170
Period size: 50 Copynumber: 2.4 Consensus size: 50
71161940 TACGTTCGAA
* * *
71161950 ATGTATACTATGTTTGAGAATAAAAGGTAAGTGTATGTACAAGTGATGAT
1 ATGTATACTAAGTATGAGAATAAAAGGTAAGTATATGTACAAGTGATGAT
* *
71162000 ATGTATACTATGTTTGAGAATAAAAGGTAAGTATATGTACAAGTGATGAT
1 ATGTATACTAAGTATGAGAATAAAAGGTAAGTATATGTACAAGTGATGAT
*
71162050 ATGTGTTA-TAAGTATGAGAA
1 ATGT-ATACTAAGTATGAGAA
71162070 AATGTGCTAT
Statistics
Matches: 65, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
50 63 0.97
51 2 0.03
ACGTcount: A:0.39, C:0.03, G:0.23, T:0.34
Consensus pattern (50 bp):
ATGTATACTAAGTATGAGAATAAAAGGTAAGTATATGTACAAGTGATGAT
Found at i:71162121 original size:20 final size:21
Alignment explanation
Indices: 71162078--71162125 Score: 64
Period size: 20 Copynumber: 2.3 Consensus size: 21
71162068 AAAATGTGCT
71162078 ATATGTGTAAATGAATTGAGA
1 ATATGTGTAAATGAATTGAGA
*
71162099 ATATGTG-AAATGTATATGA-A
1 ATATGTGTAAATGAAT-TGAGA
71162119 ATATGTG
1 ATATGTG
71162126 GTATGAGATA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
20 15 0.60
21 10 0.40
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (21 bp):
ATATGTGTAAATGAATTGAGA
Found at i:71174181 original size:37 final size:36
Alignment explanation
Indices: 71174130--71174216 Score: 138
Period size: 37 Copynumber: 2.3 Consensus size: 36
71174120 TACGAAGTCT
71174130 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
*
71174166 GTACCCGGACGTAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
71174203 TCACCCGGAACATA
1 T-ACCCGG-ACATA
71174217 TTTCTAAGTT
Statistics
Matches: 46, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
36 1 0.02
37 41 0.89
38 4 0.09
ACGTcount: A:0.25, C:0.33, G:0.21, T:0.21
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:71174352 original size:49 final size:48
Alignment explanation
Indices: 71174285--71174406 Score: 203
Period size: 49 Copynumber: 2.5 Consensus size: 48
71174275 TTTACCACAT
71174285 ATATATATACACTTTCACATTCATCACGTCAGCCATTAGGCCTTATCAC
1 ATAT-TATACACTTTCACATTCATCACGTCAGCCATTAGGCCTTATCAC
*
71174334 ATATGTATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATAT-TATACACTTTCACATTCATCACGTCAGCCATTAGGCCTTATCAC
71174383 ATA-TATACA-TTTCACATTCATCAC
1 ATATTATACACTTTCACATTCATCAC
71174407 TTTCACATTC
Statistics
Matches: 71, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
46 15 0.21
47 6 0.08
49 50 0.70
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.34
Consensus pattern (48 bp):
ATATTATACACTTTCACATTCATCACGTCAGCCATTAGGCCTTATCAC
Found at i:71174410 original size:15 final size:15
Alignment explanation
Indices: 71174392--71174421 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
71174382 CATATATACA
71174392 TTTCACATTCATCAC
1 TTTCACATTCATCAC
71174407 TTTCACATTCATCAC
1 TTTCACATTCATCAC
71174422 ATCGGCCATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.33, G:0.00, T:0.40
Consensus pattern (15 bp):
TTTCACATTCATCAC
Found at i:71174420 original size:110 final size:112
Alignment explanation
Indices: 71174294--71174519 Score: 402
Period size: 110 Copynumber: 2.0 Consensus size: 112
71174284 TATATATATA
*
71174294 CACTTTCACATTCATCACGTCAGCCATTAGGCCTTATCACATATGTATACACTTTCACATTCATC
1 CACTTTCACATTCATCACATCAGCCATTAGGCCTTATCACATATGTATACACTTTCACATTCATC
71174359 ACGTCGGCCATTAGGCCTTATCACATA-TATACA-TTTCACATTCAT
66 ACGTCGGCCATTAGGCCTTATCACATAGTATACATTTTCACATTCAT
* *
71174404 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATGTATACATTTTCACATTCATC
1 CACTTTCACATTCATCACATCAGCCATTAGGCCTTATCACATATGTATACACTTTCACATTCATC
71174469 ACGTCGGCCATTAGGCCTTATCACATATGTATACATTTTCACATTCAT
66 ACGTCGGCCATTAGGCCTTATCACATA-GTATACATTTTCACATTCAT
71174517 CAC
1 CAC
71174520 GTCGGCCATT
Statistics
Matches: 110, Mismatches: 3, Indels: 3
0.95 0.03 0.03
Matches are distributed among these distances:
110 89 0.81
112 6 0.05
113 15 0.14
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.34
Consensus pattern (112 bp):
CACTTTCACATTCATCACATCAGCCATTAGGCCTTATCACATATGTATACACTTTCACATTCATC
ACGTCGGCCATTAGGCCTTATCACATAGTATACATTTTCACATTCAT
Found at i:71174438 original size:61 final size:63
Alignment explanation
Indices: 71174343--71174470 Score: 224
Period size: 61 Copynumber: 2.0 Consensus size: 63
71174333 CATATGTATA
*
71174343 CACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATA-TATACA-TTTCACATTCAT
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAGTATACATTTTCACATTCAT
71174404 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATGTATACATTTTCACATTCAT
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATA-GTATACATTTTCACATTCAT
71174468 CAC
1 CAC
71174471 GTCGGCCATT
Statistics
Matches: 63, Mismatches: 1, Indels: 3
0.94 0.01 0.04
Matches are distributed among these distances:
61 42 0.67
63 6 0.10
64 15 0.24
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.34
Consensus pattern (63 bp):
CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAGTATACATTTTCACATTCAT
Found at i:71174463 original size:49 final size:49
Alignment explanation
Indices: 71174407--71174545 Score: 269
Period size: 49 Copynumber: 2.8 Consensus size: 49
71174397 CATTCATCAC
*
71174407 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATGTATACAT
1 TTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATGTATACAT
71174456 TTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATGTATACAT
1 TTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATGTATACAT
71174505 TTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATAT
1 TTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATAT
71174546 ATTATTATGT
Statistics
Matches: 89, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
49 89 1.00
ACGTcount: A:0.27, C:0.27, G:0.12, T:0.35
Consensus pattern (49 bp):
TTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATGTATACAT
Found at i:71179665 original size:46 final size:46
Alignment explanation
Indices: 71179605--71179774 Score: 170
Period size: 46 Copynumber: 3.7 Consensus size: 46
71179595 TGGTTGAGCA
*
71179605 TCCGAACTCGTTGAGTTGAGTTCGAGTTCACCTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
* * *
71179651 TCCGAACTCATTGAGTTGAGTCCGAGTT---C-GTGAGATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATG-GATGCGAA-T--G
*
71179696 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
* * * *
71179744 CCCGAGCTTGTTGAGTTGAGTCTGAGTTCAC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCAC
71179775 TTAGGGGCGG
Statistics
Matches: 101, Mismatches: 12, Indels: 22
0.75 0.09 0.16
Matches are distributed among these distances:
42 4 0.04
43 6 0.06
45 1 0.01
46 53 0.52
47 27 0.27
48 1 0.01
50 5 0.05
51 4 0.04
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
Found at i:71179761 original size:93 final size:93
Alignment explanation
Indices: 71179602--71179772 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
71179592 GGATGGTTGA
* *
71179602 GCATCCGAACTCGTTGAGTTGAGTTCGAGTTCACCTATGGATGCGAATGTCCGAACTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGCCCGAACTCATTGAGT
71179667 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * **
71179695 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTTGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGCCCGAACTCATTGAGT
*
71179760 TGAGTCTGAGTTC
66 TGAGTCCGAGTTC
71179773 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:71191560 original size:15 final size:15
Alignment explanation
Indices: 71191540--71191569 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
71191530 TGTATGGATC
71191540 TCCTTAACATCATCA
1 TCCTTAACATCATCA
*
71191555 TCCTTATCATCATCA
1 TCCTTAACATCATCA
71191570 CCGTCACCTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.33, G:0.00, T:0.37
Consensus pattern (15 bp):
TCCTTAACATCATCA
Found at i:71193827 original size:39 final size:40
Alignment explanation
Indices: 71193722--71193929 Score: 253
Period size: 40 Copynumber: 5.2 Consensus size: 40
71193712 TATTCGAATG
* * *
71193722 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACT
* *
71193763 ATATCCGGACTAAGAT-CCGAAGGCATCTGTGCGAGTTACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACT
*
71193803 A-ATTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACT
1 ATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
71193842 AAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
71193882 ATAACCGGGCTATGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
71193922 ATATCCGG
1 ATATCCGG
71193930 TTAAATTCCG
Statistics
Matches: 145, Mismatches: 16, Indels: 13
0.83 0.09 0.07
Matches are distributed among these distances:
39 36 0.25
40 81 0.56
41 27 0.19
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Done.