Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 228 of 318
Found at i:71849738 original size:40 final size:39
Alignment explanation
Indices: 71849573--71849756 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
71849563 AAATTGAATG
* * *
71849573 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
71849613 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
71849653 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
71849693 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
71849732 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
71849757 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:71849781 original size:80 final size:81
Alignment explanation
Indices: 71849613--71849801 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
71849603 GCTGGAAATT
* * * *
71849613 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
71849678 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
71849694 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
71849757 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
71849773 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
71849802 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:71857764 original size:40 final size:39
Alignment explanation
Indices: 71857599--71857782 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
71857589 AAATTGAATG
* * *
71857599 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
71857639 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
71857679 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
71857719 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
71857758 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
71857783 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:71857765 original size:80 final size:80
Alignment explanation
Indices: 71857643--71857791 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
71857633 GAAATTATAA
* * * *
71857643 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCATTCG
71857708 TGCGAGTCATTCTAT
66 TGCGAGTCATTCTAT
* * * * * * *
71857723 CCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGCCTTG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGCATTC
71857787 GTGCG
65 GTGCG
71857792 GGTTACCATA
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.22, C:0.25, G:0.30, T:0.23
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCATTCG
TGCGAGTCATTCTAT
Found at i:71857807 original size:80 final size:81
Alignment explanation
Indices: 71857639--71857820 Score: 181
Period size: 80 Copynumber: 2.3 Consensus size: 81
71857629 GCTGGAAATT
* * * *
71857639 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
71857704 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
71857720 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
71857783 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* *
71857799 ATAACCGGGCTATGTCCCGAAG
1 ATAACCGGGCTAAGACCCGAAG
71857821 ACGATTGATC
Statistics
Matches: 81, Mismatches: 18, Indels: 5
0.78 0.17 0.05
Matches are distributed among these distances:
79 2 0.02
80 79 0.98
ACGTcount: A:0.24, C:0.25, G:0.29, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:71865647 original size:20 final size:20
Alignment explanation
Indices: 71865622--71865663 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
71865612 ACATGTATTA
* *
71865622 ATCAAAATTCAGAATTTTTC
1 ATCAAAATTCACAACTTTTC
*
71865642 ATCAAATTTCACAACTTTTC
1 ATCAAAATTCACAACTTTTC
71865662 AT
1 AT
71865664 TTTAGTCCGT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.38, C:0.19, G:0.02, T:0.40
Consensus pattern (20 bp):
ATCAAAATTCACAACTTTTC
Found at i:71867911 original size:48 final size:48
Alignment explanation
Indices: 71867833--71868015 Score: 237
Period size: 48 Copynumber: 3.8 Consensus size: 48
71867823 TAGGGTTATT
*
71867833 TGTGATCCCATGTAAGACCATGTCTAGGACATGGCATTGGCATCAATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATA
*
71867881 TGTGATCCCATGTAAGAACATG-CTTGGGACATGGCATTGGCAT-AGATA
1 TGTGATCCCATGTAAGACCATGTC-TGGGACATGGCATTGGCATCA-ATA
* * *
71867929 TGTGA-CCCATGTAAGACCATGTCTGGGACATGGAATTGGAATCGATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATA
* * * * *
71867976 TTTGATCCCATGTAAGACCGTATATGGGATATGGCATTGG
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGG
71868016 TATTGACATG
Statistics
Matches: 118, Mismatches: 12, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
47 41 0.35
48 77 0.65
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (48 bp):
TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATA
Found at i:71868004 original size:95 final size:95
Alignment explanation
Indices: 71867833--71868044 Score: 264
Period size: 95 Copynumber: 2.2 Consensus size: 95
71867823 TAGGGTTATT
* *
71867833 TGTGATCCCATGTAAGACCATGTCTAGGACATGGCATTGGCATCAATATGTGATCCCATGTAAGA
1 TGTGA-CCCATGTAAGACCATGTCTAGGACATGGAATTGGAATCAATATGTGATCCCATGTAAGA
* *
71867898 ACATGCTTGGGACATGGCATTGGCATAGATA
65 ACATGATTGGGACATGGCATTGGCATAGACA
* * * *
71867929 TGTGACCCATGTAAGACCATGTCTGGGACATGGAATTGGAATCGATATTTGATCCCATGTAAGAC
1 TGTGACCCATGTAAGACCATGTCTAGGACATGGAATTGGAATCAATATGTGATCCCATGTAAGAA
* * * *
71867994 CGT-ATATGGGATATGGCATTGGTATTGACA
66 CATGAT-TGGGACATGGCATTGGCATAGACA
* *
71868024 TGAGACATCATGTAAGACCAT
1 TGTGAC-CCATGTAAGACCAT
71868045 AGCTGGGCTA
Statistics
Matches: 100, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
94 1 0.01
95 81 0.81
96 18 0.18
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (95 bp):
TGTGACCCATGTAAGACCATGTCTAGGACATGGAATTGGAATCAATATGTGATCCCATGTAAGAA
CATGATTGGGACATGGCATTGGCATAGACA
Found at i:71868304 original size:11 final size:11
Alignment explanation
Indices: 71868288--71868313 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
71868278 TTACTATGGG
71868288 GATGACTTTGT
1 GATGACTTTGT
71868299 GATGACTTTGT
1 GATGACTTTGT
71868310 GATG
1 GATG
71868314 GTTGGTCTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.19, C:0.08, G:0.31, T:0.42
Consensus pattern (11 bp):
GATGACTTTGT
Found at i:71881184 original size:46 final size:46
Alignment explanation
Indices: 71881134--71881309 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
71881124 TGGTTGAGCA
71881134 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
71881180 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
71881225 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
71881273 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
71881310 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:71881290 original size:93 final size:93
Alignment explanation
Indices: 71881131--71881302 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
71881121 GGATGGTTGA
* *
71881131 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
71881196 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
71881224 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
71881289 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
71881303 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:71887651 original size:45 final size:46
Alignment explanation
Indices: 71887488--71887662 Score: 216
Period size: 45 Copynumber: 3.8 Consensus size: 46
71887478 TGGTTGAGCA
*
71887488 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
71887534 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G
71887579 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
71887627 -CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
71887663 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 9, Indels: 19
0.80 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 37 0.33
46 29 0.26
47 29 0.26
48 3 0.03
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:71891269 original size:35 final size:35
Alignment explanation
Indices: 71891229--71891301 Score: 146
Period size: 35 Copynumber: 2.1 Consensus size: 35
71891219 ATTGTACAAA
71891229 TATTTGATTACGATTTGATCATGATTATAATCGAC
1 TATTTGATTACGATTTGATCATGATTATAATCGAC
71891264 TATTTGATTACGATTTGATCATGATTATAATCGAC
1 TATTTGATTACGATTTGATCATGATTATAATCGAC
71891299 TAT
1 TAT
71891302 GTTCGGCACT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.44
Consensus pattern (35 bp):
TATTTGATTACGATTTGATCATGATTATAATCGAC
Found at i:71891371 original size:40 final size:40
Alignment explanation
Indices: 71891306--71891398 Score: 118
Period size: 40 Copynumber: 2.3 Consensus size: 40
71891296 GACTATGTTC
71891306 GGCACTAAGTGTGCGGTTCGAAATAGCTTTGGCTACA-AA
1 GGCACTAAGTGTGCGGTTCGAAATAGCTTTGGCTACATAA
* * * *
71891345 TGGCACTAAGTGTGGGAGTT-GGAATAGCTTTGGCTATATGA
1 -GGCACTAAGTGTGCG-GTTCGAAATAGCTTTGGCTACATAA
71891386 GGCACTAAGTGTG
1 GGCACTAAGTGTG
71891399 TGATACTGAG
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
40 43 0.91
41 4 0.09
ACGTcount: A:0.26, C:0.14, G:0.32, T:0.28
Consensus pattern (40 bp):
GGCACTAAGTGTGCGGTTCGAAATAGCTTTGGCTACATAA
Found at i:71898077 original size:40 final size:40
Alignment explanation
Indices: 71898032--71898198 Score: 149
Period size: 40 Copynumber: 4.2 Consensus size: 40
71898022 CGGAATATAA
*
71898032 CCGGATTTAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * * *
71898072 CCGGATAGAGTAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
71898112 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * ** *
71898152 CCGGATATAATTTCCAGCATAGTTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
71898191 CCGGATAT
1 CCGGATAT
71898199 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
39 14 0.14
40 89 0.86
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:71906163 original size:40 final size:39
Alignment explanation
Indices: 71906052--71906202 Score: 142
Period size: 40 Copynumber: 3.8 Consensus size: 39
71906042 TTAATCACGT
* * *
71906052 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* * *
71906092 GCACGAATGCCTTCGGGCCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* *** *
71906132 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* *
71906172 GCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAT
71906203 CATTCAATTT
Statistics
Matches: 93, Mismatches: 17, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
39 15 0.16
40 78 0.84
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
Found at i:71906186 original size:80 final size:79
Alignment explanation
Indices: 71906052--71906202 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
71906042 TTAATCACGT
*
71906052 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
71906117 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
71906132 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
71906195 CCGGATAT
64 CCGGATAT
71906203 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:71915734 original size:40 final size:40
Alignment explanation
Indices: 71915689--71915855 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
71915679 CGGAATATAA
*
71915689 CCGGATTTAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
71915729 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
71915769 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * ** *
71915809 CCGGATATAATTTCCAGCATAGTTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
71915848 CCGGATAT
1 CCGGATAT
71915856 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
39 14 0.14
40 89 0.86
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:71917707 original size:48 final size:48
Alignment explanation
Indices: 71917638--71917831 Score: 280
Period size: 48 Copynumber: 4.0 Consensus size: 48
71917628 TAGGGTTATG
*
71917638 TGTGATCCCATGAAAGACCATGTCTGGGACATGGCATTGGCATCGATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
* * *
71917686 TGTGATCCCATGTAAGACCATGTTTGGGACATGGCATTGACATAGATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
**
71917734 TGTGATCCCATGTAAGACCATGTCTGAAACATGGCATTGGCATCGATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
* * * * * *
71917782 TTTGATCCCATGCAAGACCATATTTAGGATATGGCATTGGCATCGATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
71917830 TG
1 TG
71917832 AGACATCGTG
Statistics
Matches: 128, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 128 1.00
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.28
Consensus pattern (48 bp):
TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
Found at i:71921055 original size:29 final size:29
Alignment explanation
Indices: 71920993--71921092 Score: 170
Period size: 28 Copynumber: 3.5 Consensus size: 29
71920983 TACAGTAAGT
71920993 TCGCACACTTAGTGCT-TA-ATATTCAAAC
1 TCGCACACTTAGTGCTATACA-ATTCAAAC
71921021 TCGCACACTTAGTGCTATACAATTCAAAC
1 TCGCACACTTAGTGCTATACAATTCAAAC
71921050 TCGCACACTTAGTGCTATACAATT-AAAC
1 TCGCACACTTAGTGCTATACAATTCAAAC
71921078 TCGCACACTTAGTGC
1 TCGCACACTTAGTGC
71921093 CAATCTCATT
Statistics
Matches: 70, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
28 35 0.50
29 34 0.49
30 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.12, T:0.29
Consensus pattern (29 bp):
TCGCACACTTAGTGCTATACAATTCAAAC
Found at i:71931030 original size:30 final size:31
Alignment explanation
Indices: 71930996--71931058 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
71930986 CCTTTGCATG
71930996 TTTCATA-TTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
71931026 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
71931057 TT
1 TT
71931059 ACTGTAAACT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 7 0.23
31 23 0.77
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.37
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:71931329 original size:23 final size:23
Alignment explanation
Indices: 71931249--71931368 Score: 143
Period size: 24 Copynumber: 5.0 Consensus size: 23
71931239 TGCTTTATCA
*
71931249 TATAACTGGAGGCCT-AGCCTCTTT
1 TATAACTGG-GGCATAAGCC-CTTT
*
71931273 TAATAACTGGGGCAAAAGCCCTTT
1 T-ATAACTGGGGCATAAGCCCTTT
*
71931297 CAATAACTGGGGCATAAGCCCTTT
1 -TATAACTGGGGCATAAGCCCTTT
71931321 TATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
* *
71931344 TGAAAACTGGGGCATAAGCCGTTT
1 T-ATAACTGGGGCATAAGCCCTTT
71931368 T
1 T
71931369 GATCCATCCA
Statistics
Matches: 85, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
23 23 0.27
24 50 0.59
25 12 0.14
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.28
Consensus pattern (23 bp):
TATAACTGGGGCATAAGCCCTTT
Found at i:71931329 original size:47 final size:49
Alignment explanation
Indices: 71931241--71931368 Score: 156
Period size: 47 Copynumber: 2.6 Consensus size: 49
71931231 AGCATAGCTG
*
71931241 CTTTATCATATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCC
1 CTTT-TCA-ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCC
*
71931293 C-TTTCAATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCC
1 CTTTTCAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCC
* *
71931340 CTTTTGAA-AACTGGGGCATAAGCCGTTTT
1 CTTTTCAATAACTGGGGCATAAGCCCTTTT
71931369 GATCCATCCA
Statistics
Matches: 70, Mismatches: 4, Indels: 9
0.84 0.05 0.11
Matches are distributed among these distances:
47 38 0.54
48 14 0.20
49 12 0.17
50 3 0.04
51 2 0.03
52 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (49 bp):
CTTTTCAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCC
Found at i:71931443 original size:11 final size:11
Alignment explanation
Indices: 71931412--71931467 Score: 50
Period size: 11 Copynumber: 5.5 Consensus size: 11
71931402 TTATGATTAC
71931412 ATCATGTGCAT
1 ATCATGTGCAT
*
71931423 ATCA--TACAT
1 ATCATGTGCAT
71931432 ATCATGTGCAT
1 ATCATGTGCAT
*
71931443 ATCA--TACAT
1 ATCATGTGCAT
71931452 -TCCATGTGCAT
1 AT-CATGTGCAT
71931463 ATCAT
1 ATCAT
71931468 ACATACCATA
Statistics
Matches: 35, Mismatches: 4, Indels: 12
0.69 0.08 0.24
Matches are distributed among these distances:
8 1 0.03
9 14 0.40
11 19 0.54
12 1 0.03
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:71931476 original size:20 final size:20
Alignment explanation
Indices: 71931414--71931476 Score: 108
Period size: 20 Copynumber: 3.1 Consensus size: 20
71931404 ATGATTACAT
*
71931414 CATGTGCATATCATACATAT
1 CATGTGCATATCATACATAC
*
71931434 CATGTGCATATCATACATTC
1 CATGTGCATATCATACATAC
71931454 CATGTGCATATCATACATAC
1 CATGTGCATATCATACATAC
71931474 CAT
1 CAT
71931477 ATTTATCAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.33, C:0.24, G:0.10, T:0.33
Consensus pattern (20 bp):
CATGTGCATATCATACATAC
Found at i:71931547 original size:25 final size:25
Alignment explanation
Indices: 71931515--71931562 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
71931505 ATACATAAAC
* * *
71931515 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
71931540 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
71931563 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:71932768 original size:27 final size:27
Alignment explanation
Indices: 71932738--71932809 Score: 81
Period size: 27 Copynumber: 2.7 Consensus size: 27
71932728 TGCCATACAG
* **
71932738 GGGTATTTTGGTAGTTTTACAAATTAA
1 GGGTATTTTGGTAATTTTACAAACCAA
** *
71932765 GGGTATTGCGGTAATTTCACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAA
*
71932792 GGGTATTTTAGTAATTTT
1 GGGTATTTTGGTAATTTT
71932810 GTAAATCGAG
Statistics
Matches: 35, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAA
Found at i:71932821 original size:27 final size:27
Alignment explanation
Indices: 71932801--71933383 Score: 512
Period size: 27 Copynumber: 21.6 Consensus size: 27
71932791 AGGGTATTTT
* *
71932801 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCAAGGGTAAAAC
71932828 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCAAGGGTAAAAC
** * * *
71932855 AACAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCAAGGGTAAAAC
* * * *
71932882 GGAAATACTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCAAGGGTAAAAC
* *
71932909 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCAAGGGTAAAAC
* ** *
71932936 -GATAATTATGTAAATCGGGGGTAAAAT
1 AG-TAATTCTGTAAATCAAGGGTAAAAC
* * * *
71932963 GGTAATTATGTAAATTAGGGGTAAAAC
1 AGTAATTCTGTAAATCAAGGGTAAAAC
* * * *
71932990 GGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCAAGGGTAAAAC
* * *
71933017 AGTAATTCTATAAA-CTGAGGGTAAAAT
1 AGTAATTCTGTAAATC-AAGGGTAAAAC
* * *
71933044 GGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCAAGGGTAAAAC
* * ** *
71933071 GGTAATTTTACAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCAAGGGTAAAAC
* *
71933098 -GATAATTCTATAAATCGAGGGTAAAAC
1 AG-TAATTCTGTAAATCAAGGGTAAAAC
71933125 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCAAGGGTAAAAC
* *
71933152 AATAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-AAGGGTAAAAC
* * *
71933179 GGTAATTCTGTAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCAAGGGTAAAAC
*
71933206 AGTAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-AAGGGTAAAAC
* *
71933233 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCAAGGGTAAAAC
* * ** *
71933260 GGTAATTTTACAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCAAGGGTAAAAC
* * *
71933287 GGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCAAGGGTAAAAC
* * ** *
71933314 GGTAATTTTACAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCAAGGGTAAAAC
* *
71933341 AGTAATTCTATAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-AAGGGTAAAAC
*
71933368 GGTAATTCTGTAAATC
1 AGTAATTCTGTAAATC
71933384 GGGAGTACTT
Statistics
Matches: 488, Mismatches: 56, Indels: 23
0.86 0.10 0.04
Matches are distributed among these distances:
26 6 0.01
27 476 0.98
28 6 0.01
ACGTcount: A:0.42, C:0.10, G:0.22, T:0.27
Consensus pattern (27 bp):
AGTAATTCTGTAAATCAAGGGTAAAAC
Found at i:71932847 original size:54 final size:54
Alignment explanation
Indices: 71932802--71933384 Score: 708
Period size: 54 Copynumber: 10.8 Consensus size: 54
71932792 GGGTATTTTA
* * * *
71932802 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
** * * * *
71932856 ACAATTCTATAAATCGAGGGTAAAATGGAAATACTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
* * * *
71932910 GTAATTCTGTAAATCGAGGGTAAAACGATAATTATGTAAATCGGGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
* * * **
71932964 GTAATTATGTAAAT-TAGGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGA-GGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
* * *
71933018 GTAATTCTATAAA-CTGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
* ** * * *
71933072 GTAATTTTACAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
* **
71933126 GTAATTCTGTAAATCAAGGGTAAAACAATAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATC-GAGGGTAAAACG
**
71933180 GTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATC-GAGGGTAAAACG
* **
71933234 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
* * ** *
71933288 GTAATTCTATAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
*
71933342 GTAATTCTATAAA-CTGAGGGTAAAACGGTAATTCTGTAAATCG
1 GTAATTCTGTAAATC-GAGGGTAAAACGGTAATTCTGTAAATCG
71933385 GGAGTACTTT
Statistics
Matches: 464, Mismatches: 58, Indels: 14
0.87 0.11 0.03
Matches are distributed among these distances:
53 3 0.01
54 458 0.99
55 3 0.01
ACGTcount: A:0.41, C:0.10, G:0.22, T:0.27
Consensus pattern (54 bp):
GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
Found at i:71932900 original size:81 final size:81
Alignment explanation
Indices: 71932802--71933384 Score: 744
Period size: 81 Copynumber: 7.2 Consensus size: 81
71932792 GGGTATTTTA
* * * ***
71932802 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAACAATTCTATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATA
71932867 AATCGAGGGTAAAATG
66 AATCGAGGGTAAAATG
* * * * *
71932883 GAAATACTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTATGTA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATA
*
71932948 AATCGGGGGTAAAATG
66 AATCGAGGGTAAAATG
* * * **
71932964 GTAATTATGTAAAT-TAGGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTAT
1 GTAATTCTGTAAATCGA-GGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTAT
71933028 AAA-CTGAGGGTAAAATG
65 AAATC-GAGGGTAAAATG
* * ** *
71933045 GTAATTCTATAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACGATAATTCTATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATA
**
71933110 AATCGAGGGTAAAACA
66 AATCGAGGGTAAAATG
* ** *
71933126 GTAATTCTGTAAATCAAGGGTAAAACAATAATTCTGTAAA-CTGAGGGTAAAACGGTAATTCTGT
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATC-GAGGGTAAAACGGTAATTCTAT
*
71933190 AAATCGAGGGTAAAATA
65 AAATCGAGGGTAAAATG
* *
71933207 GTAATTCTGTAAA-CTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTAC
1 GTAATTCTGTAAATC-GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTAT
*
71933271 AAATCGAGGGTAAAACG
65 AAATCGAGGGTAAAATG
* * ** *
71933288 GTAATTCTATAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACAGTAATTCTATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATA
*
71933353 AA-CTGAGGGTAAAACG
66 AATC-GAGGGTAAAATG
71933369 GTAATTCTGTAAATCG
1 GTAATTCTGTAAATCG
71933385 GGAGTACTTT
Statistics
Matches: 436, Mismatches: 57, Indels: 18
0.85 0.11 0.04
Matches are distributed among these distances:
80 5 0.01
81 427 0.98
82 4 0.01
ACGTcount: A:0.41, C:0.10, G:0.22, T:0.27
Consensus pattern (81 bp):
GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATA
AATCGAGGGTAAAATG
Found at i:71937814 original size:15 final size:15
Alignment explanation
Indices: 71937776--71937835 Score: 66
Period size: 15 Copynumber: 4.0 Consensus size: 15
71937766 AAGAAAACCG
*
71937776 AATAAAGAAATCCAA
1 AATAAAGAAACCCAA
* **
71937791 GATTGAGAAACCCAA
1 AATAAAGAAACCCAA
* *
71937806 AATAAAGAAATCCAG
1 AATAAAGAAACCCAA
71937821 AATAAAGAAACCCAA
1 AATAAAGAAACCCAA
71937836 GATACGATAC
Statistics
Matches: 34, Mismatches: 11, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
15 34 1.00
ACGTcount: A:0.60, C:0.17, G:0.12, T:0.12
Consensus pattern (15 bp):
AATAAAGAAACCCAA
Found at i:71937830 original size:30 final size:30
Alignment explanation
Indices: 71937776--71937835 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
71937766 AAGAAAACCG
**
71937776 AATAAAGAAATCCAAGATTGAGAAACCCAA
1 AATAAAGAAATCCAAGATAAAGAAACCCAA
71937806 AATAAAGAAATCC-AGAATAAAGAAACCCAA
1 AATAAAGAAATCCAAG-ATAAAGAAACCCAA
71937836 GATACGATAC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
29 2 0.07
30 25 0.93
ACGTcount: A:0.60, C:0.17, G:0.12, T:0.12
Consensus pattern (30 bp):
AATAAAGAAATCCAAGATAAAGAAACCCAA
Found at i:71946150 original size:25 final size:25
Alignment explanation
Indices: 71946122--71946194 Score: 128
Period size: 25 Copynumber: 2.9 Consensus size: 25
71946112 CCTCTTTTAA
71946122 TAACTGGGGCAAAGCCCTTTTTGAT
1 TAACTGGGGCAAAGCCCTTTTTGAT
*
71946147 TAACTGGGGCAAAGCCCTTTTCGAT
1 TAACTGGGGCAAAGCCCTTTTTGAT
*
71946172 AAACTGGGGCAAAGCCCTTTTTG
1 TAACTGGGGCAAAGCCCTTTTTG
71946195 CACTTCCTCC
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 45 1.00
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.29
Consensus pattern (25 bp):
TAACTGGGGCAAAGCCCTTTTTGAT
Found at i:71946284 original size:10 final size:10
Alignment explanation
Indices: 71946240--71946306 Score: 73
Period size: 10 Copynumber: 6.6 Consensus size: 10
71946230 TATAATGAGT
71946240 ATATCATGTGC
1 ATATCATGT-C
* **
71946251 ATCTCATAAC
1 ATATCATGTC
*
71946261 ACATCATGTGC
1 ATATCATGT-C
71946272 ATATCATGTC
1 ATATCATGTC
71946282 ATATCATGTC
1 ATATCATGTC
71946292 ATATCATGT-
1 ATATCATGTC
71946301 ATATCA
1 ATATCA
71946307 AAATCTCATG
Statistics
Matches: 47, Mismatches: 8, Indels: 4
0.80 0.14 0.07
Matches are distributed among these distances:
9 6 0.13
10 26 0.55
11 15 0.32
ACGTcount: A:0.33, C:0.21, G:0.10, T:0.36
Consensus pattern (10 bp):
ATATCATGTC
Found at i:71946287 original size:21 final size:21
Alignment explanation
Indices: 71946240--71946306 Score: 84
Period size: 21 Copynumber: 3.3 Consensus size: 21
71946230 TATAATGAGT
* **
71946240 ATATCATGTGCATCTCATAAC
1 ATATCATGTGCATATCATGTC
*
71946261 ACATCATGTGCATATCATGTC
1 ATATCATGTGCATATCATGTC
71946282 ATATCATGT-CATATCATGT-
1 ATATCATGTGCATATCATGTC
71946301 ATATCA
1 ATATCA
71946307 AAATCTCATG
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
19 6 0.15
20 10 0.24
21 25 0.61
ACGTcount: A:0.33, C:0.21, G:0.10, T:0.36
Consensus pattern (21 bp):
ATATCATGTGCATATCATGTC
Found at i:71954792 original size:124 final size:122
Alignment explanation
Indices: 71954572--71954793 Score: 261
Period size: 124 Copynumber: 1.8 Consensus size: 122
71954562 GAATTATGTG
* * * * **
71954572 GAATGAAATATGGATGTATTGATTATTGATTTATGTGTGTATGAGTATTCGAATAATGCCTTTGC
1 GAATGAAATATGGATGTAATGATTATTGATGTATGTGTGCATGAGAATTCGAATAATGCCTGGGC
* * * **
71954637 TAAGTCCCGAAGGCGATTATGCTAGTGATTATAATTGTGTTTGAGCCTTAGTAACGA
66 TAAGCCCCGAAGACAATTATGCTAGAAATTATAATTGTGTTTGAGCCTTAGTAACGA
*
71954694 GAATGAAATATGTATGTCCAATGATTATTGATGTATGTGTGCATGAGAAATT-GAATGATAT-CC
1 GAATGAAATATGGATGT--AATGATTATTGATGTATGTGTGCATGAG-AATTCGAAT-A-ATGCC
*
71954757 -GGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATA
61 TGGGCTAAGCCCCGAAGACAATTATGCTAGAAATTATA
71954794 TCCGGGTTAA
Statistics
Matches: 82, Mismatches: 13, Indels: 8
0.80 0.13 0.08
Matches are distributed among these distances:
122 16 0.20
124 58 0.71
125 6 0.07
126 2 0.02
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.34
Consensus pattern (122 bp):
GAATGAAATATGGATGTAATGATTATTGATGTATGTGTGCATGAGAATTCGAATAATGCCTGGGC
TAAGCCCCGAAGACAATTATGCTAGAAATTATAATTGTGTTTGAGCCTTAGTAACGA
Found at i:71954837 original size:40 final size:40
Alignment explanation
Indices: 71954752--71954902 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
71954742 AATTGAATGA
* * * *
71954752 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
71954792 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
71954833 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
71954872 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
71954903 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 80 0.87
41 3 0.03
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:71954916 original size:40 final size:40
Alignment explanation
Indices: 71954789--71954918 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
71954779 ATGCTGGAAA
* * *
71954789 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * ***
71954829 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGACA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
71954869 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
71954909 TTATATCCGG
1 TTATATCCGG
71954919 TTATACTCCG
Statistics
Matches: 72, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:71954917 original size:80 final size:80
Alignment explanation
Indices: 71954751--71954918 Score: 207
Period size: 80 Copynumber: 2.1 Consensus size: 80
71954741 AAATTGAATG
* *
71954751 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
71954816 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * * *
71954831 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
71954894 CATTTGTGC-ACGTGGTT
64 CAATTGTGCTA-GTGGCT
71954911 ATATCCGG
1 ATATCCGG
71954919 TTATACTCCG
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
79 5 0.07
80 70 0.93
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:71956347 original size:20 final size:20
Alignment explanation
Indices: 71956287--71956348 Score: 60
Period size: 20 Copynumber: 3.2 Consensus size: 20
71956277 GGTGTTACAT
71956287 AAAATACATGTATTTGGTCAC
1 AAAA-ACATGTATTTGGTCAC
***
71956308 AAAAACA---ATTT-AAAAC
1 AAAAACATGTATTTGGTCAC
71956324 AAAAACATGTATTTGGTCAC
1 AAAAACATGTATTTGGTCAC
71956344 AAAAA
1 AAAAA
71956349 ATAGAAAATC
Statistics
Matches: 31, Mismatches: 6, Indels: 9
0.67 0.13 0.20
Matches are distributed among these distances:
16 9 0.29
17 4 0.13
19 4 0.13
20 10 0.32
21 4 0.13
ACGTcount: A:0.52, C:0.13, G:0.10, T:0.26
Consensus pattern (20 bp):
AAAAACATGTATTTGGTCAC
Found at i:71957421 original size:25 final size:25
Alignment explanation
Indices: 71957393--71957465 Score: 92
Period size: 25 Copynumber: 2.9 Consensus size: 25
71957383 CCTCTTTTAA
* *
71957393 TAACTAGGGTAAAGCCCTTTTTGAT
1 TAACTGGGGCAAAGCCCTTTTTGAT
* * *
71957418 TAACTGGGGCAAAACCCTTTTCGGT
1 TAACTGGGGCAAAGCCCTTTTTGAT
*
71957443 AAACTGGGGCAAAGCCCTTTTTG
1 TAACTGGGGCAAAGCCCTTTTTG
71957466 CACTTCCTCC
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (25 bp):
TAACTGGGGCAAAGCCCTTTTTGAT
Found at i:71957509 original size:5 final size:5
Alignment explanation
Indices: 71957495--71957559 Score: 58
Period size: 5 Copynumber: 12.6 Consensus size: 5
71957485 AAGCCCAACC
* * * * *
71957495 CATAA CATAT CATAT GCATCT CATAA CATAT CATGT GCATAT CATGT CATAT
1 CATAT CATAT CATAT -CATAT CATAT CATAT CATAT -CATAT CATAT CATAT
*
71957547 CATGT CATAT CAT
1 CATAT CATAT CAT
71957560 GTATATCAAA
Statistics
Matches: 47, Mismatches: 11, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
5 39 0.83
6 8 0.17
ACGTcount: A:0.35, C:0.22, G:0.08, T:0.35
Consensus pattern (5 bp):
CATAT
Found at i:71957519 original size:21 final size:21
Alignment explanation
Indices: 71957495--71957559 Score: 78
Period size: 21 Copynumber: 3.1 Consensus size: 21
71957485 AAGCCCAACC
*
71957495 CATAACATATCATATGCATCT
1 CATAACATATCATATGCATAT
*
71957516 CATAACATATCATGTGCATAT
1 CATAACATATCATATGCATAT
** *
71957537 CATGTCATATCATGT-CATAT
1 CATAACATATCATATGCATAT
71957557 CAT
1 CAT
71957560 GTATATCAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
20 8 0.20
21 32 0.80
ACGTcount: A:0.35, C:0.22, G:0.08, T:0.35
Consensus pattern (21 bp):
CATAACATATCATATGCATAT
Found at i:71957545 original size:10 final size:10
Alignment explanation
Indices: 71957521--71957567 Score: 78
Period size: 10 Copynumber: 4.7 Consensus size: 10
71957511 CATCTCATAA
71957521 CATATCATGT
1 CATATCATGT
71957531 GCATATCATGT
1 -CATATCATGT
71957542 CATATCATGT
1 CATATCATGT
71957552 CATATCATGT
1 CATATCATGT
71957562 -ATATCA
1 CATATCA
71957568 AAATCTCATG
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
9 6 0.17
10 20 0.56
11 10 0.28
ACGTcount: A:0.32, C:0.19, G:0.11, T:0.38
Consensus pattern (10 bp):
CATATCATGT
Found at i:71968244 original size:23 final size:23
Alignment explanation
Indices: 71968218--71968264 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
71968208 CATTCTATTG
*
71968218 TCATACCCATGCCATTACTATGC
1 TCATACCCATGCCATTACCATGC
* * *
71968241 TCATTCTCATGCTATTACCATGC
1 TCATACCCATGCCATTACCATGC
71968264 T
1 T
71968265 AATGTCATGA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.23, C:0.32, G:0.09, T:0.36
Consensus pattern (23 bp):
TCATACCCATGCCATTACCATGC
Found at i:71979636 original size:30 final size:30
Alignment explanation
Indices: 71979602--71979670 Score: 129
Period size: 30 Copynumber: 2.3 Consensus size: 30
71979592 TGTGCAAGGC
71979602 CGTGTGTCACACACGATCAAGACACTTGCT
1 CGTGTGTCACACACGATCAAGACACTTGCT
71979632 CGTGTGTCACACACGATCAAGACACTTGCT
1 CGTGTGTCACACACGATCAAGACACTTGCT
*
71979662 CTTGTGTCA
1 CGTGTGTCA
71979671 ACCCGTTTGG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.26
Consensus pattern (30 bp):
CGTGTGTCACACACGATCAAGACACTTGCT
Found at i:71991273 original size:34 final size:34
Alignment explanation
Indices: 71991224--71991297 Score: 112
Period size: 34 Copynumber: 2.2 Consensus size: 34
71991214 AGTGTCACGA
*
71991224 TTCACAACTCAGTATGGAAATACCCTACCTACGT
1 TTCACAACTCAGTATGGAAATACCATACCTACGT
* * *
71991258 TTCACAGCTCCGTATGGAAATACCATACCTATGT
1 TTCACAACTCAGTATGGAAATACCATACCTACGT
71991292 TTCACA
1 TTCACA
71991298 CTTTTTCGTG
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.31, C:0.28, G:0.12, T:0.28
Consensus pattern (34 bp):
TTCACAACTCAGTATGGAAATACCATACCTACGT
Found at i:71991552 original size:31 final size:31
Alignment explanation
Indices: 71991517--71991681 Score: 244
Period size: 31 Copynumber: 5.4 Consensus size: 31
71991507 AGCTGAAACC
* * * *
71991517 ACCACTATTCACTAATCAGGTAGCTGGAGCT
1 ACCACTTTTCACTGATCAGGTAGCCGAAGCT
*
71991548 ACCACTTTTCACTTATCAGGTAGCCGAAGCT
1 ACCACTTTTCACTGATCAGGTAGCCGAAGCT
*
71991579 ACTACTTTTCACTGATCAGG--GCCGAAGCT
1 ACCACTTTTCACTGATCAGGTAGCCGAAGCT
*
71991608 ACCACTTTTCACTGATCAGGTAGCCCAAGCT
1 ACCACTTTTCACTGATCAGGTAGCCGAAGCT
*
71991639 ACCACTTTTCACTGATCAGGTGGCCGAAGCT
1 ACCACTTTTCACTGATCAGGTAGCCGAAGCT
71991670 ACCACTTTTCAC
1 ACCACTTTTCAC
71991682 ATTTTACACA
Statistics
Matches: 122, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
29 28 0.23
31 94 0.77
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (31 bp):
ACCACTTTTCACTGATCAGGTAGCCGAAGCT
Found at i:71991620 original size:60 final size:62
Alignment explanation
Indices: 71991517--71991681 Score: 244
Period size: 60 Copynumber: 2.7 Consensus size: 62
71991507 AGCTGAAACC
* * * * * * *
71991517 ACCACTATTCACTAATCAGGTAGCTGGAGCTACCACTTTTCACTTATCAGGTAGCCGAAGCT
1 ACCACTTTTCACTGATCAGGTGGCCGAAGCTACCACTTTTCACTGATCAGGTAGCCCAAGCT
*
71991579 ACTACTTTTCACTGATCA-G-GGCCGAAGCTACCACTTTTCACTGATCAGGTAGCCCAAGCT
1 ACCACTTTTCACTGATCAGGTGGCCGAAGCTACCACTTTTCACTGATCAGGTAGCCCAAGCT
71991639 ACCACTTTTCACTGATCAGGTGGCCGAAGCTACCACTTTTCAC
1 ACCACTTTTCACTGATCAGGTGGCCGAAGCTACCACTTTTCAC
71991682 ATTTTACACA
Statistics
Matches: 92, Mismatches: 9, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
60 53 0.58
61 2 0.02
62 37 0.40
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (62 bp):
ACCACTTTTCACTGATCAGGTGGCCGAAGCTACCACTTTTCACTGATCAGGTAGCCCAAGCT
Found at i:71991724 original size:32 final size:31
Alignment explanation
Indices: 71991686--71991786 Score: 105
Period size: 33 Copynumber: 3.1 Consensus size: 31
71991676 TTTCACATTT
71991686 TACACACAAGGCATACATTTCCTTTTCAAG-TG
1 TACACACAAGG--TACATTTCCTTTTCAAGTTG
* *
71991718 TACACACAAAGTGTACGTTTCCTTTTTAAGTTG
1 TACACAC-AAG-GTACATTTCCTTTTCAAGTTG
* *
71991751 AACACACACAGTGTACATTTCCTTTTCCAGTTG
1 TACACACA-AG-GTACATTTCCTTTTCAAGTTG
71991784 TAC
1 TAC
71991787 CTTTTAGGTA
Statistics
Matches: 58, Mismatches: 7, Indels: 7
0.81 0.10 0.10
Matches are distributed among these distances:
32 23 0.40
33 34 0.59
34 1 0.02
ACGTcount: A:0.29, C:0.24, G:0.13, T:0.35
Consensus pattern (31 bp):
TACACACAAGGTACATTTCCTTTTCAAGTTG
Found at i:71991783 original size:33 final size:33
Alignment explanation
Indices: 71991699--71991783 Score: 118
Period size: 33 Copynumber: 2.6 Consensus size: 33
71991689 ACACAAGGCA
*
71991699 TACATTTCCTTTTCAAG-TGTACACACAAAGTG
1 TACATTTCCTTTTCAAGTTGAACACACAAAGTG
* * *
71991731 TACGTTTCCTTTTTAAGTTGAACACACACAGTG
1 TACATTTCCTTTTCAAGTTGAACACACAAAGTG
*
71991764 TACATTTCCTTTTCCAGTTG
1 TACATTTCCTTTTCAAGTTG
71991784 TACCTTTTAG
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
32 15 0.33
33 30 0.67
ACGTcount: A:0.26, C:0.22, G:0.13, T:0.39
Consensus pattern (33 bp):
TACATTTCCTTTTCAAGTTGAACACACAAAGTG
Found at i:71991807 original size:33 final size:32
Alignment explanation
Indices: 71991763--71991843 Score: 87
Period size: 33 Copynumber: 2.5 Consensus size: 32
71991753 CACACACAGT
*
71991763 GTACATTTCCTTTTCCAGTTGT-ACCTTTT-AG
1 GTACATTTCCTTTTCAAG-TGTCACCTTTTCAG
71991794 GTACATGTATCCTTTTCAAGTGTCACCTTTTCAG
1 GTACAT-T-TCCTTTTCAAGTGTCACCTTTTCAG
*
71991828 GTGA-AATTCCTTTTCA
1 GT-ACATTTCCTTTTCA
71991844 TAATGAGATC
Statistics
Matches: 43, Mismatches: 2, Indels: 9
0.80 0.04 0.17
Matches are distributed among these distances:
31 6 0.14
32 13 0.30
33 18 0.42
34 5 0.12
35 1 0.02
ACGTcount: A:0.20, C:0.22, G:0.14, T:0.44
Consensus pattern (32 bp):
GTACATTTCCTTTTCAAGTGTCACCTTTTCAG
Found at i:71993438 original size:11 final size:11
Alignment explanation
Indices: 71993422--71993476 Score: 58
Period size: 11 Copynumber: 4.9 Consensus size: 11
71993412 TATACTAAAT
71993422 AAATAATAATA
1 AAATAATAATA
71993433 AAATAATAAT-
1 AAATAATAATA
* *
71993443 AAATATCTCATTA
1 AAATA-AT-AATA
*
71993456 AAATATTAATA
1 AAATAATAATA
71993467 AAATAATAAT
1 AAATAATAAT
71993477 TATCTAATTA
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
10 5 0.14
11 23 0.64
12 3 0.08
13 5 0.14
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.33
Consensus pattern (11 bp):
AAATAATAATA
Found at i:71995428 original size:39 final size:39
Alignment explanation
Indices: 71995383--71995464 Score: 137
Period size: 39 Copynumber: 2.1 Consensus size: 39
71995373 AAGCAAGACA
71995383 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
* * *
71995422 CTGGAAATGTATCCGGGCTAAAGTCTCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
71995461 CTGG
1 CTGG
71995465 TAACATAATT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.21, C:0.23, G:0.32, T:0.24
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
Found at i:71995720 original size:10 final size:10
Alignment explanation
Indices: 71995705--71995732 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
71995695 TCGGTAAATG
71995705 TGTGAAGTTA
1 TGTGAAGTTA
71995715 TGTGAAGTTA
1 TGTGAAGTTA
71995725 TGTGAAGT
1 TGTGAAGT
71995733 GATTCTATGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.29, C:0.00, G:0.32, T:0.39
Consensus pattern (10 bp):
TGTGAAGTTA
Found at i:71999652 original size:25 final size:23
Alignment explanation
Indices: 71999603--71999653 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 23
71999593 TCCAGGCTAT
*
71999603 ATAATGGGAAGCTCATAAGAGCC
1 ATAATGGGAAGCTCAAAAGAGCC
* *
71999626 ATAATCGGGAAGTTCACAAAGATCC
1 ATAAT-GGGAAGCTCA-AAAGAGCC
71999651 ATA
1 ATA
71999654 TCAGAAAGCT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 5 0.22
24 9 0.39
25 9 0.39
ACGTcount: A:0.41, C:0.18, G:0.22, T:0.20
Consensus pattern (23 bp):
ATAATGGGAAGCTCAAAAGAGCC
Found at i:72006712 original size:27 final size:27
Alignment explanation
Indices: 72006416--72006711 Score: 360
Period size: 27 Copynumber: 11.0 Consensus size: 27
72006406 GTAGGCAAAT
*
72006416 CAGTCATTTTACCTTATAGGGGTATTA
1 CAGTCATTTTACCCTATAGGGGTATTA
* *
72006443 AAGTCATTTTACCCTACAGGGGTATTA
1 CAGTCATTTTACCCTATAGGGGTATTA
* * *
72006470 CAGTCAATTTACCTTATAGGGGTATTT
1 CAGTCATTTTACCCTATAGGGGTATTA
* * * *
72006497 CGGTCATTTTACCTTATGGGGGTATTT
1 CAGTCATTTTACCCTATAGGGGTATTA
* *
72006524 CGGTCATTTTACCCTACAGGGGTATTA
1 CAGTCATTTTACCCTATAGGGGTATTA
*
72006551 CAGTCATTTTACCCTACAGGGGTATTA
1 CAGTCATTTTACCCTATAGGGGTATTA
*
72006578 CAGTCATTTTACCCTACAGGGGTATTA
1 CAGTCATTTTACCCTATAGGGGTATTA
* * *
72006605 CAGTCATCTTACCCTACAAGGGTATTA
1 CAGTCATTTTACCCTATAGGGGTATTA
* * *
72006632 CAGTCATTTCACCTTATAGGGGTATTT
1 CAGTCATTTTACCCTATAGGGGTATTA
* *
72006659 C-GATCATTTTACCCTATCGGGGTATTT
1 CAG-TCATTTTACCCTATAGGGGTATTA
* *
72006686 CGGTCATTTTACCCTATGGGGGTATT
1 CAGTCATTTTACCCTATAGGGGTATT
72006712 TTTGCCATTT
Statistics
Matches: 239, Mismatches: 28, Indels: 4
0.88 0.10 0.01
Matches are distributed among these distances:
26 1 0.00
27 237 0.99
28 1 0.00
ACGTcount: A:0.23, C:0.20, G:0.20, T:0.37
Consensus pattern (27 bp):
CAGTCATTTTACCCTATAGGGGTATTA
Found at i:72009524 original size:76 final size:78
Alignment explanation
Indices: 72009418--72009564 Score: 244
Period size: 76 Copynumber: 1.9 Consensus size: 78
72009408 GGTAACCCGC
*
72009418 ACAAATGCCTTTGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTC-GGCTTAGCCCGG
1 ACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGG
72009482 ATATCATAGCTCG
66 ATATCATAGCTCG
* * *
72009495 ACAATTGCCTTCGGG-CTTAGCCCGGATATCACAATTCGCACAATTGCCTTCGGGCTTAGCCCGG
1 ACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGG
72009559 ATATCA
66 ATATCA
72009565 CAATTCGCAC
Statistics
Matches: 65, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
76 34 0.52
77 31 0.48
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.25
Consensus pattern (78 bp):
ACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGG
ATATCATAGCTCG
Found at i:72009549 original size:39 final size:39
Alignment explanation
Indices: 72009415--72009575 Score: 236
Period size: 39 Copynumber: 4.2 Consensus size: 39
72009405 TATGGTAACC
* * *
72009415 CGCACAAATGCCTTTGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
72009455 CGCACAATTGCCTTC-GGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
72009493 CG-ACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
72009531 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
72009570 CGCACA
1 CGCACA
72009576 TTCATTCACA
Statistics
Matches: 111, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
37 12 0.11
38 42 0.38
39 44 0.40
40 13 0.12
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:72017286 original size:40 final size:39
Alignment explanation
Indices: 72017242--72017434 Score: 251
Period size: 39 Copynumber: 4.9 Consensus size: 39
72017232 GTTCAAAACA
* * ** * *
72017242 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
72017282 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
72017322 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
72017361 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
72017400 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACA
72017435 TTCATTCACA
Statistics
Matches: 139, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 99 0.71
40 40 0.29
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:72017353 original size:39 final size:39
Alignment explanation
Indices: 72017272--72017434 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
72017262 TATGGTAACC
* *
72017272 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
72017312 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
72017351 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
72017390 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
72017429 CGCACA
1 CGCACA
72017435 TTCATTCACA
Statistics
Matches: 116, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 99 0.85
40 17 0.15
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:72023178 original size:40 final size:40
Alignment explanation
Indices: 72023112--72023278 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
72023102 AAATTGAATG
* * *
72023112 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
72023151 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
72023191 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGGGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTGGTAATT
* * ** *
72023231 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
72023271 ATATCCGG
1 ATATCCGG
72023279 TTATATTCCG
Statistics
Matches: 105, Mismatches: 20, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:72023245 original size:80 final size:79
Alignment explanation
Indices: 72023112--72023262 Score: 205
Period size: 80 Copynumber: 1.9 Consensus size: 79
72023102 AAATTGAATG
* *
72023112 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGCCCGAAGACAATTATGCGGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
72023177 TTGTGCTAGTGGCT
66 TTGTGCTAGTGGCT
* * ** *
72023191 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGGGTTATTCTATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAG-CCCGAAGACAATT-ATGCGGGAAATTATATCCGGGCTAAGACCCGAAGGC
*
72023255 ATTTGTGC
64 AATTGTGC
72023263 ACGTGATTAT
Statistics
Matches: 62, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
ATATCCGGGCTAAGCCCGAAGACAATTATGCGGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCTAGTGGCT
Found at i:72027124 original size:22 final size:22
Alignment explanation
Indices: 72027099--72027153 Score: 101
Period size: 22 Copynumber: 2.5 Consensus size: 22
72027089 TAGTGCCTTA
72027099 CAGGCTTAGTGTCAGTGTTATT
1 CAGGCTTAGTGTCAGTGTTATT
*
72027121 CAGGTTTAGTGTCAGTGTTATT
1 CAGGCTTAGTGTCAGTGTTATT
72027143 CAGGCTTAGTG
1 CAGGCTTAGTG
72027154 CCTAGCAGAC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.18, C:0.13, G:0.29, T:0.40
Consensus pattern (22 bp):
CAGGCTTAGTGTCAGTGTTATT
Found at i:72027242 original size:38 final size:38
Alignment explanation
Indices: 72027121--72027264 Score: 164
Period size: 38 Copynumber: 3.8 Consensus size: 38
72027111 CAGTGTTATT
*
72027121 CAGGTTTAGTGTCAGTGTTATTCAGGCTTAGTGCCTAG
1 CAGGCTTAGTGTCAGTGTTATTCAGGCTTAGTGCCTAG
* * * * *
72027159 CAGACTTTGTGTCAGTATTATTCAAGCTTTGTGCCTAG
1 CAGGCTTAGTGTCAGTGTTATTCAGGCTTAGTGCCTAG
* *
72027197 CAAGCTTAGTGTCAGTGTTATTTAGGCTTAGTGCCTAG
1 CAGGCTTAGTGTCAGTGTTATTCAGGCTTAGTGCCTAG
* * * *
72027235 TAGGCTTA-TTTCTTGTGTTATTTAGGCTTA
1 CAGGCTTAGTGTC-AGTGTTATTCAGGCTTA
72027265 TAGACGGTGT
Statistics
Matches: 88, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
37 3 0.03
38 85 0.97
ACGTcount: A:0.19, C:0.15, G:0.24, T:0.41
Consensus pattern (38 bp):
CAGGCTTAGTGTCAGTGTTATTCAGGCTTAGTGCCTAG
Found at i:72034607 original size:39 final size:39
Alignment explanation
Indices: 72034546--72034626 Score: 99
Period size: 39 Copynumber: 2.1 Consensus size: 39
72034536 ATTTCAATAT
** * *
72034546 ACCGGCACGTAGCCTACTAGGCACAAAGCCCGAATAATC
1 ACCGGCACACAGCCTACCAGGCACAAAGCACGAATAATC
* * *
72034585 ACCGGCACACAGCCTGCCAGGCACATATCACGAATAATC
1 ACCGGCACACAGCCTACCAGGCACAAAGCACGAATAATC
72034624 ACC
1 ACC
72034627 ATGTTTCTAT
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.33, C:0.36, G:0.19, T:0.12
Consensus pattern (39 bp):
ACCGGCACACAGCCTACCAGGCACAAAGCACGAATAATC
Found at i:72040746 original size:2 final size:2
Alignment explanation
Indices: 72040739--72040764 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
72040729 ACTAGCATAG
72040739 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
72040765 TGTTGGCACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:72046646 original size:24 final size:24
Alignment explanation
Indices: 72046618--72046666 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
72046608 CCCGAAAAGG
72046618 TAACAACATGAAATCAGCAGGGCA
1 TAACAACATGAAATCAGCAGGGCA
*
72046642 TAACAACATTAAATCAGCAGGGCA
1 TAACAACATGAAATCAGCAGGGCA
72046666 T
1 T
72046667 TCATAGCCTC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.45, C:0.20, G:0.18, T:0.16
Consensus pattern (24 bp):
TAACAACATGAAATCAGCAGGGCA
Found at i:72048950 original size:20 final size:20
Alignment explanation
Indices: 72048897--72048952 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 20
72048887 ATCATATGAG
* *
72048897 ACTGTTTTATTATGGG-CCA
1 ACTGTATTAATATGGGCCCA
72048916 ACTGTATTGAA-ATGGGCCCA
1 ACTGTATT-AATATGGGCCCA
*
72048936 ACTGTGTTAATATGGGC
1 ACTGTATTAATATGGGC
72048953 AAGGCCCAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
19 14 0.45
20 17 0.55
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.34
Consensus pattern (20 bp):
ACTGTATTAATATGGGCCCA
Found at i:72049020 original size:27 final size:28
Alignment explanation
Indices: 72048981--72049080 Score: 89
Period size: 27 Copynumber: 3.5 Consensus size: 28
72048971 ACTTGTAATA
72048981 GGCTACGGCCCAGATTGATATTGATATG
1 GGCTACGGCCCAGATTGATATTGATATG
*
72049009 GGCTA-GGCCCAGTATACTCTGATATTG-TAAGG
1 GGCTACGGCCCAG---A-T-TGATATTGAT-ATG
* *
72049041 GGCTATGGCCCAGATTAATATTGAT-TG
1 GGCTACGGCCCAGATTGATATTGATATG
*
72049068 GGCTAAGGCCCAG
1 GGCTACGGCCCAG
72049081 TTAACTCTGA
Statistics
Matches: 60, Mismatches: 4, Indels: 17
0.74 0.05 0.21
Matches are distributed among these distances:
27 20 0.33
28 12 0.20
29 2 0.03
30 2 0.03
31 2 0.03
32 15 0.25
33 7 0.12
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (28 bp):
GGCTACGGCCCAGATTGATATTGATATG
Found at i:72049032 original size:32 final size:31
Alignment explanation
Indices: 72048996--72049091 Score: 87
Period size: 32 Copynumber: 3.1 Consensus size: 31
72048986 CGGCCCAGAT
72048996 TGATATTGATATGGGCTAGGCCCAGTATACTC
1 TGATATTGATATGGGCTAGGCCCAGT-TACTC
*
72049028 TGATATTG-TAAGGGGCTATGGCCCAG--A-T-
1 TGATATTGAT-ATGGGCTA-GGCCCAGTTACTC
*
72049056 TAATATTGAT-TGGGCTAAGGCCCAGTTAACTC
1 TGATATTGATATGGGCT-AGGCCCAGTT-ACTC
72049088 TGAT
1 TGAT
72049092 TTCTGAATAG
Statistics
Matches: 51, Mismatches: 4, Indels: 18
0.70 0.05 0.25
Matches are distributed among these distances:
27 12 0.24
28 8 0.16
29 2 0.04
30 2 0.04
31 2 0.04
32 18 0.35
33 7 0.14
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (31 bp):
TGATATTGATATGGGCTAGGCCCAGTTACTC
Found at i:72049051 original size:60 final size:60
Alignment explanation
Indices: 72048945--72049091 Score: 176
Period size: 60 Copynumber: 2.5 Consensus size: 60
72048935 AACTGTGTTA
* * * * *
72048945 ATATGGGCAAGGCCCAATATA-TCTCGA-CTTGTAATAGGCTACGGCCCAGATTGATATTG
1 ATATGGGCTAGGCCCAGTATACTCT-GATATTGTAAGAGGCTACGGCCCAGATTAATATTG
* *
72049004 ATATGGGCTAGGCCCAGTATACTCTGATATTGTAAGGGGCTATGGCCCAGATTAATATTG
1 ATATGGGCTAGGCCCAGTATACTCTGATATTGTAAGAGGCTACGGCCCAGATTAATATTG
72049064 AT-TGGGCTAAGGCCCAGT-TAACTCTGAT
1 ATATGGGCT-AGGCCCAGTAT-ACTCTGAT
72049092 TTCTGAATAG
Statistics
Matches: 77, Mismatches: 7, Indels: 7
0.85 0.08 0.08
Matches are distributed among these distances:
59 28 0.36
60 49 0.64
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (60 bp):
ATATGGGCTAGGCCCAGTATACTCTGATATTGTAAGAGGCTACGGCCCAGATTAATATTG
Found at i:72049091 original size:26 final size:27
Alignment explanation
Indices: 72049040--72049092 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
72049030 ATATTGTAAG
* *
72049040 GGGCTATGGCCCAGATTAATATTGATT
1 GGGCTAAGGCCCAGATTAATACTGATT
72049067 GGGCTAAGGCCCAG-TTAACT-CTGATT
1 GGGCTAAGGCCCAGATTAA-TACTGATT
72049093 TCTGAATAGG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
26 9 0.39
27 14 0.61
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (27 bp):
GGGCTAAGGCCCAGATTAATACTGATT
Found at i:72053228 original size:40 final size:40
Alignment explanation
Indices: 72053173--72053261 Score: 151
Period size: 40 Copynumber: 2.2 Consensus size: 40
72053163 CGGATTATAA
*
72053173 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATT
*
72053213 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATT
*
72053253 CTGGGCTAA
1 CCGGGCTAA
72053262 TGACTTTTGG
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 46 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATT
Found at i:72054235 original size:45 final size:44
Alignment explanation
Indices: 72054165--72054355 Score: 195
Period size: 45 Copynumber: 4.1 Consensus size: 44
72054155 TAAGACCATG
*
72054165 TCGGCGTTGATTGTGAGCCAGTGTAAGACCATGTTGGACATGGCA
1 TCGGCATTGATTGTGAG-CAGTGTAAGACCATGTTGGACATGGCA
*
72054210 TCGGCATTGATTGTGAGTCAATGTAAGACCATGTTGGACATGGCA
1 TCGGCATTGATTGTGAG-CAGTGTAAGACCATGTTGGACATGGCA
* * *
72054255 TTGACATTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCA
1 TCGGCATTGAT-TGTGAGC-AGTGTAAGACCATGT-T-GGACATGGCA
* * * *
72054303 TCGGCCA-TAACATGAGAGCCAGTGTAAGACCATGTCTAGGACATGGAA
1 TCGG-CATTGA-TTGTGAG-CAGTGTAAGACCATGT-T-GGACATGGCA
72054351 TCGGC
1 TCGGC
72054356 CATTCACCCT
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
45 52 0.42
46 19 0.15
47 2 0.02
48 48 0.39
49 3 0.02
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (44 bp):
TCGGCATTGATTGTGAGCAGTGTAAGACCATGTTGGACATGGCA
Found at i:72054327 original size:48 final size:46
Alignment explanation
Indices: 72054171--72054359 Score: 204
Period size: 48 Copynumber: 4.0 Consensus size: 46
72054161 CATGTCGGCG
*
72054171 TTGATTGTGAGCCAGTGTAAGACCATGTTGGACATGGCATCGG-CA
1 TTGAATGTGAGCCAGTGTAAGACCATGTTGGACATGGCATCGGCCA
* * * * *
72054216 TTGATTGTGAGTCAATGTAAGACCATGTTGGACATGGCAT-TGACA
1 TTGAATGTGAGCCAGTGTAAGACCATGTTGGACATGGCATCGGCCA
* *
72054261 TTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA
1 TTGA-ATGTGAGCCAGTGTAAGACCATGT-T-GGACATGGCATCGGCCA
* * *
72054310 -TAACATGAGAGCCAGTGTAAGACCATGTCTAGGACATGGAATCGGCCA
1 TTGA-ATGTGAGCCAGTGTAAGACCATGT-T-GGACATGGCATCGGCCA
72054358 TT
1 TT
72054360 CACCCTCTTG
Statistics
Matches: 121, Mismatches: 17, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
44 1 0.01
45 44 0.36
46 19 0.16
47 1 0.01
48 52 0.43
49 4 0.03
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (46 bp):
TTGAATGTGAGCCAGTGTAAGACCATGTTGGACATGGCATCGGCCA
Found at i:72056178 original size:19 final size:18
Alignment explanation
Indices: 72056150--72056185 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
72056140 TACACAGCCT
72056150 AAGGACATGGGCGTGTCG
1 AAGGACATGGGCGTGTCG
*
72056168 AAGGCACATGGGTGTGTC
1 AAGG-ACATGGGCGTGTC
72056186 TTTGTGTTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.22, C:0.17, G:0.42, T:0.19
Consensus pattern (18 bp):
AAGGACATGGGCGTGTCG
Found at i:72057387 original size:39 final size:39
Alignment explanation
Indices: 72057343--72057561 Score: 150
Period size: 39 Copynumber: 5.6 Consensus size: 39
72057333 ACATAGACTA
* * * *
72057343 CTAGGCATAAAGCCTAAATAATAATCGGCATATAGCCTG
1 CTAGGCACAAAGCCTAAATAATAACCGGCACACAGCCTG
* *
72057382 TTAGGCACAAAGCCTAAATAATCACCGGCACACAGCCTG
1 CTAGGCACAAAGCCTAAATAATAACCGGCACACAGCCTG
* * * * *** ** *
72057421 CTAGGCGCATAGCCCAAATAATCACCTATATGCAGCTTG
1 CTAGGCACAAAGCCTAAATAATAACCGGCACACAGCCTG
* ** * * *
72057460 CTAGGCACATAGCCCGGAATAATCACCGGCACATAGCCTT
1 CTAGGCACAAAG-CCTAAATAATAACCGGCACACAGCCTG
* ** * * *
72057500 CTAGGCACACAGCCCGAATAATCACCTGCACACTGCCTG
1 CTAGGCACAAAGCCTAAATAATAACCGGCACACAGCCTG
* * *
72057539 CTTGGCACATAGCCTGAATAATA
1 CTAGGCACAAAGCCTAAATAATA
72057562 TCCGTGTTTC
Statistics
Matches: 142, Mismatches: 37, Indels: 2
0.78 0.20 0.01
Matches are distributed among these distances:
39 114 0.80
40 28 0.20
ACGTcount: A:0.33, C:0.29, G:0.18, T:0.20
Consensus pattern (39 bp):
CTAGGCACAAAGCCTAAATAATAACCGGCACACAGCCTG
Found at i:72057546 original size:79 final size:78
Alignment explanation
Indices: 72057376--72057560 Score: 208
Period size: 79 Copynumber: 2.4 Consensus size: 78
72057366 ATCGGCATAT
* * ** * *
72057376 AGCCTGTTAGGCACAAAGCCTAAATAATCACCGGCACACAGCCTGCTAGGCGCATAGCCCAAATA
1 AGCCTGCTAGGCACATAGCCGGAATAATCACCGGCACACAGCCTGCTAGGCACACAGCCCAAATA
* **
72057441 ATCACCTATATGC
66 ATCACCTACACAC
* * * *
72057454 AGCTTGCTAGGCACATAGCCCGGAATAATCACCGGCACATAGCCTTCTAGGCACACAGCCCGAAT
1 AGCCTGCTAGGCACATAG-CCGGAATAATCACCGGCACACAGCCTGCTAGGCACACAGCCCAAAT
*
72057519 AATCACCTGCACAC
65 AATCACCTACACAC
* * *
72057533 TGCCTGCTTGGCACATAGCCTGAATAAT
1 AGCCTGCTAGGCACATAGCCGGAATAAT
72057561 ATCCGTGTTT
Statistics
Matches: 88, Mismatches: 18, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
78 24 0.27
79 64 0.73
ACGTcount: A:0.31, C:0.31, G:0.19, T:0.19
Consensus pattern (78 bp):
AGCCTGCTAGGCACATAGCCGGAATAATCACCGGCACACAGCCTGCTAGGCACACAGCCCAAATA
ATCACCTACACAC
Found at i:72057688 original size:36 final size:36
Alignment explanation
Indices: 72057648--72057723 Score: 134
Period size: 36 Copynumber: 2.1 Consensus size: 36
72057638 AAGAAGATTA
72057648 ATAGTAACCATATAACAAACTTACCTAGATTGAATC
1 ATAGTAACCATATAACAAACTTACCTAGATTGAATC
* *
72057684 ATAGTAACCATATAACGAACTTACCTGGATTGAATC
1 ATAGTAACCATATAACAAACTTACCTAGATTGAATC
72057720 ATAG
1 ATAG
72057724 AAATTGCAGA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.42, C:0.18, G:0.12, T:0.28
Consensus pattern (36 bp):
ATAGTAACCATATAACAAACTTACCTAGATTGAATC
Found at i:72060829 original size:30 final size:29
Alignment explanation
Indices: 72060737--72060836 Score: 114
Period size: 28 Copynumber: 3.4 Consensus size: 29
72060727 TAGTGAATCT
* * *
72060737 GCACACTTAGTGCTATATATTTTCAGCTC
1 GCACACTTAGTGCTATAAATTTTAAACTC
*
72060766 GCACACTTAGTGCTATAGAA--TCAAACTC
1 GCACACTTAGTGCTATA-AATTTTAAACTC
* *
72060794 GCACACTTAGTGCTGTACAATTTTAAACCC
1 GCACACTTAGTGCTATA-AATTTTAAACTC
72060824 GCACACTTAGTGC
1 GCACACTTAGTGC
72060837 CAATCTTGTC
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 17 0.28
30 20 0.33
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.30
Consensus pattern (29 bp):
GCACACTTAGTGCTATAAATTTTAAACTC
Found at i:72069924 original size:29 final size:30
Alignment explanation
Indices: 72069886--72069954 Score: 79
Period size: 29 Copynumber: 2.4 Consensus size: 30
72069876 CATACCCTCG
*
72069886 AGCTCGCACACCCAGTGCCGTAT-TTTTCC
1 AGCTCGCACACCCAGTGCCATATATTTTCC
* **
72069915 AGCTTGCACACTTAGTGCCATATATTTT-C
1 AGCTCGCACACCCAGTGCCATATATTTTCC
*
72069944 AGCACGCACAC
1 AGCTCGCACAC
72069955 TTAGTGCCGA
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
29 29 0.88
30 4 0.12
ACGTcount: A:0.23, C:0.33, G:0.16, T:0.28
Consensus pattern (30 bp):
AGCTCGCACACCCAGTGCCATATATTTTCC
Found at i:72071762 original size:30 final size:29
Alignment explanation
Indices: 72071668--72071769 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
72071658 TATAGTGAAT
* * *
72071668 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
72071697 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
72071725 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
72071755 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
72071770 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:72073371 original size:2 final size:2
Alignment explanation
Indices: 72073364--72073399 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
72073354 GGGATGTCAC
72073364 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
72073400 CTATTTCTTC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:72076236 original size:40 final size:40
Alignment explanation
Indices: 72076191--72076357 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
72076181 CGGAATATAA
*
72076191 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-AGCACAAATGCCTTCGGGTCTTAGC
* ** * *
72076231 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
72076271 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * *
72076311 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
72076350 CCGGATAT
1 CCGGATAT
72076358 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 13 0.12
40 91 0.87
41 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:72076341 original size:80 final size:79
Alignment explanation
Indices: 72076207--72076357 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
72076197 ATAACCATGT
*
72076207 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGG-CTTAGCC
72076272 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
72076287 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGCTTAGC
72076350 CCGGATAT
64 CCGGATAT
72076358 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:72083702 original size:39 final size:38
Alignment explanation
Indices: 72083580--72083708 Score: 159
Period size: 40 Copynumber: 3.3 Consensus size: 38
72083570 CGGAATATAA
*
72083580 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCA-CTGCAC-AATGCCTTCGGGTCTTAGC
* **
72083620 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-GCAC-AATGCCTTCGGGTCTTAGC
* *
72083660 CCGGATATAGCCACTGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTGCACAA-TGCCTTCGGGTCTTAGC
72083699 CCGGATATAA
1 CCGGATATAA
72083709 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
38 2 0.03
39 30 0.39
40 44 0.58
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (38 bp):
CCGGATATAACCACTGCACAATGCCTTCGGGTCTTAGC
Found at i:72083729 original size:79 final size:79
Alignment explanation
Indices: 72083580--72083745 Score: 203
Period size: 79 Copynumber: 2.1 Consensus size: 79
72083570 CGGAATATAA
* *
72083580 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATG
1 CCGGATATAACCATCTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATG
72083645 CCTTCGGGTCTTAGC
66 CCTTCGGG-CTTAGC
* * * ** *
72083660 CCGGATATAGCCA-CTGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAAT
1 CCGGATATAACCATCTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-
*
72083722 TGTCTTCGGGCTTAGC
64 TGCCTTCGGGCTTAGC
72083738 CCGGATAT
1 CCGGATAT
72083746 CATTCAATTT
Statistics
Matches: 75, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 17 0.23
79 46 0.61
80 12 0.16
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (79 bp):
CCGGATATAACCATCTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:72083741 original size:39 final size:38
Alignment explanation
Indices: 72083596--72083745 Score: 144
Period size: 40 Copynumber: 3.8 Consensus size: 38
72083586 ATAACCATGT
* * * *
72083596 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATA-TA-GCCAC
72083636 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCAC
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAGCCAC
* *
72083674 TGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA-
1 -GCACAATTGCCTTCGGGTCTTAGCCCGGATAT-A--GCCAC
* *
72083715 GCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
72083746 CATTCAATTT
Statistics
Matches: 96, Mismatches: 8, Indels: 13
0.82 0.07 0.11
Matches are distributed among these distances:
38 5 0.05
39 42 0.44
40 44 0.46
41 2 0.02
42 3 0.03
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (38 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCCAC
Found at i:72088574 original size:22 final size:22
Alignment explanation
Indices: 72088548--72088605 Score: 59
Period size: 22 Copynumber: 2.7 Consensus size: 22
72088538 TGTTTATAGC
*
72088548 TTATGAAATGATATA-ATTTGG
1 TTATGAAATGATATAGAATTGG
*
72088569 TATATGATATG-TATAGAATTGG
1 T-TATGAAATGATATAGAATTGG
*
72088591 TT-GGAAATGATATAG
1 TTATGAAATGATATAG
72088606 CATGATTGGT
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
20 5 0.17
21 11 0.37
22 14 0.47
ACGTcount: A:0.38, C:0.00, G:0.22, T:0.40
Consensus pattern (22 bp):
TTATGAAATGATATAGAATTGG
Found at i:72092666 original size:23 final size:23
Alignment explanation
Indices: 72092614--72092666 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 23
72092604 TTGAGCCATG
*
72092614 TGATATGGCTTGCTTTTGGTTGA
1 TGATATGGCTTGATTTTGGTTGA
** *
72092637 TCTTATGGTTTGATTTTGGTAT-A
1 TGATATGGCTTGATTTTGGT-TGA
72092660 TGATATG
1 TGATATG
72092667 TGATGCAAAT
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
23 22 0.96
24 1 0.04
ACGTcount: A:0.17, C:0.06, G:0.26, T:0.51
Consensus pattern (23 bp):
TGATATGGCTTGATTTTGGTTGA
Found at i:72097745 original size:48 final size:48
Alignment explanation
Indices: 72097693--72098014 Score: 173
Period size: 46 Copynumber: 6.8 Consensus size: 48
72097683 GCCACATTAT
72097693 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGAC
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGAC
* * * * * *
72097741 GAGAGCTAGTGTAAGA-TATGTTTAGGACAT-GCATCGGCCTCGAGATC
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGA-C
* * * * *
72097788 TA-AGCTAATGTAAGA-CATGTTTGGGACAT-GCATTGGC--T-ACGA-
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA-GAC
* * * * *
72097830 GATGTGTCAGTGTAAGACCATGTCTGGGACATGGCTTCAGCACGTAT-A-AA
1 GA-GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA--T-TGAGAC
* * * * ** * *
72097880 G-GTGTCAGTGTAAGACCATGTCTGGGACATGGCATTGACACGGATATGT
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGA--C
* * * * ***
72097929 GAGAGCTAGTGTAAGACCATGTCTGGGACATGGCGTCAGCATCGATTTT
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA-GAC
* * *
72097978 GATAGTCAGTGTAAGACCATGTTTGGGACATGGCATC
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
72098015 AGTGTTATAC
Statistics
Matches: 213, Mismatches: 43, Indels: 35
0.73 0.15 0.12
Matches are distributed among these distances:
42 1 0.00
43 1 0.00
44 11 0.05
45 13 0.06
46 50 0.23
47 14 0.07
48 50 0.23
49 35 0.16
50 35 0.16
51 3 0.01
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.25
Consensus pattern (48 bp):
GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGAC
Found at i:72097794 original size:46 final size:46
Alignment explanation
Indices: 72097652--72097862 Score: 164
Period size: 46 Copynumber: 4.6 Consensus size: 46
72097642 TATTTGTGTA
** * *
72097652 CTAGTGTAAGACATGACTGGGACATGCATCGGCCA-C-ATTATGAGAG
1 CTAGTGTAAGACATGTTTGGGACATGCATCGG-CATCGA-GACGAGAG
* * *
72097698 CCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGAG
1 CTAGTGTAAGA-CATGTTTGGGACAT-GCATCGGCATCGAGACGAGAG
* * * *
72097746 CTAGTGTAAGATATGTTTAGGACATGCATCGGCCTCGAGATCTA-AG
1 CTAGTGTAAGACATGTTTGGGACATGCATCGGCATCGAGA-CGAGAG
* * * * *
72097792 CTAATGTAAGACATGTTTGGGACATGCATTGGC-TACGAGATGTG-T
1 CTAGTGTAAGACATGTTTGGGACATGCATCGGCAT-CGAGACGAGAG
*
72097837 C-AGTGTAAGACCATGTCTGGGACATG
1 CTAGTGTAAGA-CATGTTTGGGACATG
72097863 GCTTCAGCAC
Statistics
Matches: 135, Mismatches: 22, Indels: 17
0.78 0.13 0.10
Matches are distributed among these distances:
44 8 0.06
45 16 0.12
46 59 0.44
47 28 0.21
48 23 0.17
49 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (46 bp):
CTAGTGTAAGACATGTTTGGGACATGCATCGGCATCGAGACGAGAG
Found at i:72106517 original size:91 final size:92
Alignment explanation
Indices: 72106408--72106576 Score: 295
Period size: 91 Copynumber: 1.8 Consensus size: 92
72106398 GCCCCTAAGT
* *
72106408 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTC-GACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
72106472 CGAGTTCGGATGCCTAGTTACATTCAC
66 CGAGTTCGGATGCCTAGTTACATTCAC
* *
72106499 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
72106564 CGAGTTCGGATGC
66 CGAGTTCGGATGC
72106577 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
91 48 0.66
92 25 0.34
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTCAC
Found at i:72106549 original size:46 final size:46
Alignment explanation
Indices: 72106403--72106573 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
72106393 AACCCGCCCC
* * * *
72106403 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* *
72106449 TAAGTGAACTC-GACTCAACTCAACGAGTTCGGATGCCTAGTTACAT---
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
72106495 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
72106540 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
72106574 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 6 0.06
43 1 0.01
45 28 0.27
46 64 0.62
48 1 0.01
49 4 0.04
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:72106592 original size:46 final size:46
Alignment explanation
Indices: 72106405--72106592 Score: 135
Period size: 46 Copynumber: 4.1 Consensus size: 46
72106395 CCCGCCCCTA
* ** * *
72106405 AGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTC--GCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCC-T
*
72106450 AAGTGAACTC-GACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATTC-
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCCT
* * * *
72106497 A-CGAACTCGGACTCAACTCAACGAGTTCGGACAT-TTGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCT-CAACCATCCT
72106542 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
72106588 AGTGA
1 AGTGA
72106593 CATGTCACTT
Statistics
Matches: 113, Mismatches: 12, Indels: 34
0.71 0.08 0.21
Matches are distributed among these distances:
44 9 0.08
45 29 0.26
46 67 0.59
48 3 0.03
49 5 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
Found at i:72113974 original size:91 final size:92
Alignment explanation
Indices: 72113865--72114033 Score: 295
Period size: 91 Copynumber: 1.8 Consensus size: 92
72113855 GCCCCTAAGT
* *
72113865 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTC-GACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
72113929 CGAGTTCGGATGCCTAGTTACATTCAC
66 CGAGTTCGGATGCCTAGTTACATTCAC
* *
72113956 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
72114021 CGAGTTCGGATGC
66 CGAGTTCGGATGC
72114034 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
91 48 0.66
92 25 0.34
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTCAC
Found at i:72114006 original size:46 final size:46
Alignment explanation
Indices: 72113860--72114030 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
72113850 AACCCGCCCC
* * * *
72113860 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* *
72113906 TAAGTGAACTC-GACTCAACTCAACGAGTTCGGATGCCTAGTTACAT---
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
72113952 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
72113997 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
72114031 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 6 0.06
43 1 0.01
45 28 0.27
46 64 0.62
48 1 0.01
49 4 0.04
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:72114049 original size:46 final size:46
Alignment explanation
Indices: 72113862--72114049 Score: 135
Period size: 46 Copynumber: 4.1 Consensus size: 46
72113852 CCCGCCCCTA
* ** * *
72113862 AGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTC--GCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCC-T
*
72113907 AAGTGAACTC-GACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATTC-
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCCT
* * * *
72113954 A-CGAACTCGGACTCAACTCAACGAGTTCGGACAT-TTGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCT-CAACCATCCT
72113999 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
72114045 AGTGA
1 AGTGA
72114050 CATGTCACTT
Statistics
Matches: 113, Mismatches: 12, Indels: 34
0.71 0.08 0.21
Matches are distributed among these distances:
44 9 0.08
45 29 0.26
46 67 0.59
48 3 0.03
49 5 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
Found at i:72117280 original size:21 final size:21
Alignment explanation
Indices: 72117255--72117305 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
72117245 ATTTTAATAT
*
72117255 ACATGATATGACATGATATGC
1 ACATGATATGACATGAGATGC
**
72117276 ACATGATATGTTATGAGATGC
1 ACATGATATGACATGAGATGC
72117297 ACATGATAT
1 ACATGATAT
72117306 ACTCATTATA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (21 bp):
ACATGATATGACATGAGATGC
Found at i:72117281 original size:11 final size:11
Alignment explanation
Indices: 72117255--72117319 Score: 62
Period size: 11 Copynumber: 6.1 Consensus size: 11
72117245 ATTTTAATAT
72117255 ACATGATATG-
1 ACATGATATGC
72117265 ACATGATATGC
1 ACATGATATGC
72117276 ACATGATATG-
1 ACATGATATGC
** *
72117286 TTATGAGATGC
1 ACATGATATGC
*
72117297 ACATGATATAC
1 ACATGATATGC
* *
72117308 TCATTATATGC
1 ACATGATATGC
72117319 A
1 A
72117320 TGGGTTGGGT
Statistics
Matches: 42, Mismatches: 11, Indels: 3
0.75 0.20 0.05
Matches are distributed among these distances:
10 17 0.40
11 25 0.60
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.32
Consensus pattern (11 bp):
ACATGATATGC
Found at i:72117317 original size:32 final size:31
Alignment explanation
Indices: 72117257--72117317 Score: 77
Period size: 32 Copynumber: 1.9 Consensus size: 31
72117247 TTTAATATAC
* *
72117257 ATGATATGACATGATATGCACATGATATGTT
1 ATGAGATGACATGATATACACATGATATGTT
* *
72117288 ATGAGATGCACATGATATACTCATTATATG
1 ATGAGATG-ACATGATATACACATGATATG
72117318 CATGGGTTGG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
31 7 0.28
32 18 0.72
ACGTcount: A:0.36, C:0.11, G:0.18, T:0.34
Consensus pattern (31 bp):
ATGAGATGACATGATATACACATGATATGTT
Found at i:72117406 original size:25 final size:25
Alignment explanation
Indices: 72117351--72117423 Score: 83
Period size: 25 Copynumber: 2.9 Consensus size: 25
72117341 GGAGGAAGTG
* * *
72117351 CAAAAAGGGTTTTGCCCTAGTTTAC
1 CAAAAAGGGCTTTGCCCCAGTTAAC
* *
72117376 CGAAAAGGGCTTTGCCCCAGTTAAT
1 CAAAAAGGGCTTTGCCCCAGTTAAC
* *
72117401 CAAAAAGCGCTTTACCCCAGTTA
1 CAAAAAGGGCTTTGCCCCAGTTA
72117424 TTAAAAGAGG
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (25 bp):
CAAAAAGGGCTTTGCCCCAGTTAAC
Found at i:72125322 original size:11 final size:11
Alignment explanation
Indices: 72125296--72125360 Score: 62
Period size: 11 Copynumber: 6.1 Consensus size: 11
72125286 ATTTTGATAT
72125296 ACATGATATG-
1 ACATGATATGC
72125306 ACATGATATGC
1 ACATGATATGC
72125317 ACATGATATG-
1 ACATGATATGC
** *
72125327 TTATGAGATGC
1 ACATGATATGC
*
72125338 ACATGATATAC
1 ACATGATATGC
* *
72125349 TCATTATATGC
1 ACATGATATGC
72125360 A
1 A
72125361 TGGGTTGGGT
Statistics
Matches: 42, Mismatches: 11, Indels: 3
0.75 0.20 0.05
Matches are distributed among these distances:
10 17 0.40
11 25 0.60
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.32
Consensus pattern (11 bp):
ACATGATATGC
Found at i:72125322 original size:21 final size:21
Alignment explanation
Indices: 72125296--72125346 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
72125286 ATTTTGATAT
*
72125296 ACATGATATGACATGATATGC
1 ACATGATATGACATGAGATGC
**
72125317 ACATGATATGTTATGAGATGC
1 ACATGATATGACATGAGATGC
72125338 ACATGATAT
1 ACATGATAT
72125347 ACTCATTATA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (21 bp):
ACATGATATGACATGAGATGC
Found at i:72125358 original size:32 final size:31
Alignment explanation
Indices: 72125298--72125358 Score: 77
Period size: 32 Copynumber: 1.9 Consensus size: 31
72125288 TTTGATATAC
* *
72125298 ATGATATGACATGATATGCACATGATATGTT
1 ATGAGATGACATGATATACACATGATATGTT
* *
72125329 ATGAGATGCACATGATATACTCATTATATG
1 ATGAGATG-ACATGATATACACATGATATG
72125359 CATGGGTTGG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
31 7 0.28
32 18 0.72
ACGTcount: A:0.36, C:0.11, G:0.18, T:0.34
Consensus pattern (31 bp):
ATGAGATGACATGATATACACATGATATGTT
Found at i:72129348 original size:49 final size:49
Alignment explanation
Indices: 72129285--72129459 Score: 242
Period size: 49 Copynumber: 3.5 Consensus size: 49
72129275 TTGGTATGCA
* *
72129285 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCAGGTACACG
* * * * * *
72129334 TAGTAGCCTGCACTTAGTACTACACACGTGATCACATTTTTCAGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGCGA-C-CAATTATCAGGTACACG
* *
72129385 TAGTAGCTTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCAGGTACACG
72129434 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
72129460 CGTGACCTCA
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
49 66 0.62
50 2 0.02
51 39 0.36
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCAGGTACACG
Found at i:72129397 original size:100 final size:100
Alignment explanation
Indices: 72129277--72129464 Score: 340
Period size: 100 Copynumber: 1.9 Consensus size: 100
72129267 GAAGCTATTT
* *
72129277 GGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCC
72129342 TGCACTTAGTACTACACACGTGATCACATTTTTCA
66 TGCACTTAGTACTACACACGTGATCACATTTTTCA
* *
72129377 GGTACGCATAGTAGCTTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCC
72129442 TGCACTTAGTACTACACACGTGA
66 TGCACTTAGTACTACACACGTGA
72129465 CCTCACAATA
Statistics
Matches: 84, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
100 84 1.00
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.27
Consensus pattern (100 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCC
TGCACTTAGTACTACACACGTGATCACATTTTTCA
Found at i:72133421 original size:56 final size:56
Alignment explanation
Indices: 72133324--72133432 Score: 130
Period size: 56 Copynumber: 1.9 Consensus size: 56
72133314 ACCATGGCAT
* * * *
72133324 CGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGACTC
1 CGATATATGTGTGCGAGTAAGACCACATTTAAGACGTTGGCATCAATAAGTGACTC
** **
72133380 CGATATATGTGTGCGAGTAAGACCTTATTTGGGAC-TGTGGCATCAATAAGTGA
1 CGATATATGTGTGCGAGTAAGACCACATTTAAGACGT-TGGCATCAATAAGTGA
72133433 TTACATGTAA
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
55 1 0.02
56 43 0.98
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.30
Consensus pattern (56 bp):
CGATATATGTGTGCGAGTAAGACCACATTTAAGACGTTGGCATCAATAAGTGACTC
Found at i:72133745 original size:25 final size:25
Alignment explanation
Indices: 72133717--72133768 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
72133707 ATGTTATATT
72133717 TGATTCATGAGTATATGTATATAAG
1 TGATTCATGAGTATATGTATATAAG
*
72133742 TGATTCATGTGTATATGTATATAAG
1 TGATTCATGAGTATATGTATATAAG
72133767 TG
1 TG
72133769 TTAATGTACT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.33, C:0.04, G:0.21, T:0.42
Consensus pattern (25 bp):
TGATTCATGAGTATATGTATATAAG
Found at i:72135937 original size:13 final size:13
Alignment explanation
Indices: 72135896--72135938 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 13
72135886 GGGGTAGGAT
72135896 TCTGTTTATCTG-A
1 TCTG-TTATCTGTA
*
72135909 TCTGTATATTTGTA
1 TCTGT-TATCTGTA
72135923 TCTGTTATCTGTA
1 TCTGTTATCTGTA
72135936 TCT
1 TCT
72135939 AATATGGACA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
12 1 0.04
13 19 0.73
14 6 0.23
ACGTcount: A:0.16, C:0.14, G:0.14, T:0.56
Consensus pattern (13 bp):
TCTGTTATCTGTA
Found at i:72137587 original size:27 final size:27
Alignment explanation
Indices: 72137535--72137589 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
72137525 TATTGTTCTG
* *
72137535 GTGGCTTTGCCACGTATTCTGATATTA
1 GTGGCTATGCCACGTATTCCGATATTA
*
72137562 GTGGCTATGCCACGT-TTACCGCTATTA
1 GTGGCTATGCCACGTATT-CCGATATTA
72137589 G
1 G
72137590 CAACTTTGCT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 2 0.08
27 22 0.92
ACGTcount: A:0.18, C:0.22, G:0.24, T:0.36
Consensus pattern (27 bp):
GTGGCTATGCCACGTATTCCGATATTA
Found at i:72137640 original size:23 final size:23
Alignment explanation
Indices: 72137583--72137640 Score: 80
Period size: 23 Copynumber: 2.5 Consensus size: 23
72137573 ACGTTTACCG
* *
72137583 CTATTAGCAACTTTGCTGCGTTA
1 CTATTAGCAGCTTTGCTGCATTA
*
72137606 CTATTAGCAGCTTTGTTGCATTA
1 CTATTAGCAGCTTTGCTGCATTA
*
72137629 CTATTAGTAGCT
1 CTATTAGCAGCT
72137641 ACACTGCAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.22, C:0.19, G:0.17, T:0.41
Consensus pattern (23 bp):
CTATTAGCAGCTTTGCTGCATTA
Found at i:72137821 original size:33 final size:34
Alignment explanation
Indices: 72137782--72137853 Score: 92
Period size: 33 Copynumber: 2.1 Consensus size: 34
72137772 ATAAGCCCAC
* * * *
72137782 ACTGTTACCGCATAGGGTTTAGGCCCAGACTG-T
1 ACTGTTAACGAATAAGGTTTAGGCCCAGACCGTT
*
72137815 ACTGTTAATGAATAAGGTTTAGGCCCAGACCGTT
1 ACTGTTAACGAATAAGGTTTAGGCCCAGACCGTT
72137849 ACTGT
1 ACTGT
72137854 ATGCACTGTT
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
33 27 0.82
34 6 0.18
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (34 bp):
ACTGTTAACGAATAAGGTTTAGGCCCAGACCGTT
Found at i:72147095 original size:12 final size:12
Alignment explanation
Indices: 72147069--72147119 Score: 50
Period size: 12 Copynumber: 4.2 Consensus size: 12
72147059 TCTGCGATTT
*
72147069 TTTTTGTTTT-T
1 TTTTTGTTTTCC
72147080 TTTTTGTTTTCC
1 TTTTTGTTTTCC
**
72147092 TTTTTCCTTTCC
1 TTTTTGTTTTCC
72147104 TTTTTGCTCTTTCC
1 TTTTTG-T-TTTCC
72147118 TT
1 TT
72147120 GTTTTGTGCA
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
11 10 0.31
12 15 0.47
14 7 0.22
ACGTcount: A:0.00, C:0.20, G:0.06, T:0.75
Consensus pattern (12 bp):
TTTTTGTTTTCC
Found at i:72151014 original size:48 final size:48
Alignment explanation
Indices: 72150938--72151060 Score: 147
Period size: 48 Copynumber: 2.6 Consensus size: 48
72150928 CATTGGGGAA
* * ** **
72150938 TACATTGATTTGGCTTCGGGCCACGATATCGGCACATCAGGTGCAAGT
1 TACATTGATTTGGCTTCGAGCCATGATATCGAAACATCAGGAACAAGT
* *
72150986 TACATTGATTTGGCTTCGAGCCATGATATCGAAACTTCGGGAACAAGT
1 TACATTGATTTGGCTTCGAGCCATGATATCGAAACATCAGGAACAAGT
* * *
72151034 TACATTAATTTGGTTTTGAGCCATGAT
1 TACATTGATTTGGCTTCGAGCCATGAT
72151061 GTTGGCACTT
Statistics
Matches: 64, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
48 64 1.00
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.32
Consensus pattern (48 bp):
TACATTGATTTGGCTTCGAGCCATGATATCGAAACATCAGGAACAAGT
Found at i:72156227 original size:34 final size:34
Alignment explanation
Indices: 72156162--72156228 Score: 98
Period size: 34 Copynumber: 2.0 Consensus size: 34
72156152 CGCTGAAAAG
* *
72156162 CACAAACTCTTTTCCCGACTCAGGTTGCACTAAT
1 CACAAACTCTTTTCCCGACTCAAGTTCCACTAAT
* *
72156196 CACAAACTCTTTTCCTGACTTAAGTTCCACTAA
1 CACAAACTCTTTTCCCGACTCAAGTTCCACTAA
72156229 CACTGGTGCC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.31
Consensus pattern (34 bp):
CACAAACTCTTTTCCCGACTCAAGTTCCACTAAT
Found at i:72177881 original size:40 final size:40
Alignment explanation
Indices: 72177837--72178000 Score: 181
Period size: 40 Copynumber: 4.1 Consensus size: 40
72177827 GCTCGATTGT
* * * *
72177837 CTTCGGGACATAGCCCGATTATAGTAATTCGCACAATTGC
1 CTTCGGGACATAACCCGATTTTAGTAACTCGCACAAATGC
*
72177877 CTTCGGGA-ATTAGCCCGGA-TTTAGTAACTCGCACAAATGC
1 CTTCGGGACA-TAACCC-GATTTTAGTAACTCGCACAAATGC
* * *
72177917 CTTCGGGAC-TCAACCCGGTTTTGGTAACTCTCACAAATGC
1 CTTCGGGACAT-AACCCGATTTTAGTAACTCGCACAAATGC
* * *
72177957 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACATAACCCGATTTTAGTAACTCGCACAAATGC
72177997 CTTC
1 CTTC
72178001 AGGAATTGAC
Statistics
Matches: 110, Mismatches: 8, Indels: 12
0.85 0.06 0.09
Matches are distributed among these distances:
39 3 0.03
40 104 0.95
41 3 0.03
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.27
Consensus pattern (40 bp):
CTTCGGGACATAACCCGATTTTAGTAACTCGCACAAATGC
Found at i:72178013 original size:40 final size:40
Alignment explanation
Indices: 72177860--72178014 Score: 211
Period size: 40 Copynumber: 3.9 Consensus size: 40
72177850 CCCGATTATA
* * * * *
72177860 GTAATTCGCACAATTGCCTTCGGGAATTAGCCCGGATTTA
1 GTAACTCGCACAAATGCCTTCGGGAATTAACCCGGTTTTG
* *
72177900 GTAACTCGCACAAATGCCTTCGGGACTCAACCCGGTTTTG
1 GTAACTCGCACAAATGCCTTCGGGAATTAACCCGGTTTTG
* *
72177940 GTAACTCTCACAAATGCCTTCGGGACTTAACCCGGTTTTG
1 GTAACTCGCACAAATGCCTTCGGGAATTAACCCGGTTTTG
* *
72177980 GTAACTCGCACAAATGCCTTCAGGAATTGACCCGG
1 GTAACTCGCACAAATGCCTTCGGGAATTAACCCGG
72178015 ATTTATTCAC
Statistics
Matches: 102, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 102 1.00
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
GTAACTCGCACAAATGCCTTCGGGAATTAACCCGGTTTTG
Found at i:72178013 original size:80 final size:80
Alignment explanation
Indices: 72177868--72178049 Score: 213
Period size: 80 Copynumber: 2.3 Consensus size: 80
72177858 TAGTAATTCG
* * * * *
72177868 CACAATTGCCTTCGGGAATTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTCAACCC
1 CACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCAGGAATCAACCC
* *
72177933 GGTTTTGGTAACTCT-
66 GGATTTAGTAACT-TA
* * **
72177948 CACAAATGCCTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTCAGGAATTGACCC
1 CACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCAGGAATCAACCC
* *
72178013 GGATTTATTCACTTA
66 GGATTTAGTAACTTA
*
72178028 GCACAAAAGCCTTCGGGACTTA
1 -CACAAATGCCTTCGGGACTTA
72178050 GCTCGGATAC
Statistics
Matches: 86, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
79 1 0.01
80 65 0.76
81 20 0.23
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (80 bp):
CACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCAGGAATCAACCC
GGATTTAGTAACTTA
Done.