Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 229 of 318
Found at i:72186094 original size:80 final size:80
Alignment explanation
Indices: 72186010--72186158 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
72186000 TATGGTAACC
* * * *
72186010 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
72186074 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
72186090 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
72186155 CCGG
66 CCGG
72186159 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:72186100 original size:40 final size:38
Alignment explanation
Indices: 72186051--72186158 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
72186041 ATCACGATTT
*
72186051 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
72186091 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
72186131 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
72186159 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:72192865 original size:40 final size:40
Alignment explanation
Indices: 72192782--72192989 Score: 184
Period size: 40 Copynumber: 5.2 Consensus size: 40
72192772 CGGGATTTAA
* * * * * *
72192782 CCGGATATAGCGACTCGCTCGATTGTCTTCGGGACCTAGC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
* ** * * *
72192822 CCGGTTATAGTGATTCGCACGATTGCCTTCGGGTCTTAAC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * *
72192862 CCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
*
72192902 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
*** * * *
72192942 CCGGATATAATTACTAGCA-TAATTGCCTTCGGGACTTAGC
1 CCGGATATAGCAACTCGCACGAA-TGCCTTCGGGTCTTAGC
72192982 CCGGATAT
1 CCGGATAT
72192990 CATTCCAATG
Statistics
Matches: 139, Mismatches: 28, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
39 2 0.01
40 137 0.99
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:72192902 original size:80 final size:80
Alignment explanation
Indices: 72192808--72192989 Score: 220
Period size: 80 Copynumber: 2.3 Consensus size: 80
72192798 GCTCGATTGT
* * *** * * * **
72192808 CTTCGGGACCTAGCCCGGTTATAGTGATTCGCACGATTGCCTTCGGGTCTTAACCCGGATTTGGT
1 CTTCGGGACTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAACCCGGATATAAT
*
72192873 AACTTGCACAAATGC
66 AACTAGCACAAATGC
* *
72192888 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAAT
1 CTTCGGGACTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAACCCGGATATAAT
* * *
72192953 TACTAGCATAATTGC
66 AACTAGCACAAATGC
72192968 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
72192990 CATTCCAATG
Statistics
Matches: 85, Mismatches: 17, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
80 85 1.00
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAACCCGGATATAAT
AACTAGCACAAATGC
Found at i:72200375 original size:55 final size:54
Alignment explanation
Indices: 72200235--72200438 Score: 239
Period size: 53 Copynumber: 3.8 Consensus size: 54
72200225 CTTTTTAAAC
* * * *
72200235 TTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-GAAC
1 TTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGTAT
* * * * *
72200288 TCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAGTAGT
1 TTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGTA-T
* * * * * *
72200343 TTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAATAT
1 TTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGTAT
* *
72200397 TTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 TTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
72200439 AAACCCTAAT
Statistics
Matches: 125, Mismatches: 24, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
53 44 0.35
54 39 0.31
55 42 0.34
ACGTcount: A:0.20, C:0.24, G:0.18, T:0.39
Consensus pattern (54 bp):
TTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGTAT
Found at i:72201687 original size:2 final size:2
Alignment explanation
Indices: 72201680--72201705 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
72201670 CATATAATGA
72201680 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
72201706 CAAGCTGAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:72203350 original size:42 final size:44
Alignment explanation
Indices: 72203263--72203425 Score: 206
Period size: 44 Copynumber: 3.8 Consensus size: 44
72203253 AACACCAACA
* * * *
72203263 TCCCATACTTGGTCTTACATGT-AATCACATATCGATGCCACTG
1 TCCCAAACATGGTCTTACACGTAAATCACATATCGATGCCAATG
* * * * *
72203306 TCCCAGACAGGGTCTTATACG-AACTCATATAT-GATGCCAATG
1 TCCCAAACATGGTCTTACACGTAAATCACATATCGATGCCAATG
* *
72203348 TCCCAAACATGGTCTTACACGTAAATCACAAATCGATGCCAACG
1 TCCCAAACATGGTCTTACACGTAAATCACATATCGATGCCAATG
72203392 TCCCAAACATGGTCTTACACGTAAATCACATATC
1 TCCCAAACATGGTCTTACACGTAAATCACATATC
72203426 AAAATCCTAT
Statistics
Matches: 101, Mismatches: 16, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
42 27 0.27
43 32 0.32
44 42 0.42
ACGTcount: A:0.32, C:0.28, G:0.14, T:0.26
Consensus pattern (44 bp):
TCCCAAACATGGTCTTACACGTAAATCACATATCGATGCCAATG
Found at i:72204553 original size:13 final size:13
Alignment explanation
Indices: 72204535--72204559 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
72204525 ACAAACAATA
72204535 AAATTTTCACACG
1 AAATTTTCACACG
72204548 AAATTTTCACAC
1 AAATTTTCACAC
72204560 ACATCAATTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:72214925 original size:13 final size:13
Alignment explanation
Indices: 72214907--72214965 Score: 50
Period size: 13 Copynumber: 4.5 Consensus size: 13
72214897 CATATCTATC
72214907 CATATAAACATTT
1 CATATAAACATTT
*
72214920 CATAT-AACACTT
1 CATATAAACATTT
**
72214932 CATATAATTATTT
1 CATATAAACATTT
*
72214945 CCATAT-AACCTATT
1 -CATATAAACAT-TT
72214959 CATATAA
1 CATATAA
72214966 TTATTTCGTT
Statistics
Matches: 35, Mismatches: 7, Indels: 7
0.71 0.14 0.14
Matches are distributed among these distances:
12 11 0.31
13 16 0.46
14 8 0.23
ACGTcount: A:0.42, C:0.19, G:0.00, T:0.39
Consensus pattern (13 bp):
CATATAAACATTT
Found at i:72214951 original size:14 final size:14
Alignment explanation
Indices: 72214932--72214972 Score: 50
Period size: 13 Copynumber: 3.0 Consensus size: 14
72214922 TATAACACTT
72214932 CATATAATTATTTC
1 CATATAATTATTTC
*
72214946 CATATAACCTA-TT-
1 CATATAA-TTATTTC
72214959 CATATAATTATTTC
1 CATATAATTATTTC
72214973 GTTTATCTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 6
0.73 0.07 0.20
Matches are distributed among these distances:
12 2 0.09
13 9 0.41
14 9 0.41
15 2 0.09
ACGTcount: A:0.37, C:0.17, G:0.00, T:0.46
Consensus pattern (14 bp):
CATATAATTATTTC
Found at i:72215016 original size:13 final size:13
Alignment explanation
Indices: 72214996--72215063 Score: 52
Period size: 13 Copynumber: 5.2 Consensus size: 13
72214986 CATATAACAG
72214996 ATTC-ATATAACC
1 ATTCTATATAACC
* *
72215008 ATTCTATATATCT
1 ATTCTATATAACC
72215021 ATTTCTATATAACC
1 A-TTCTATATAACC
*
72215035 AATTCT-TATAATC
1 -ATTCTATATAACC
*
72215048 ATT-TCACATAACC
1 ATTCT-ATATAACC
72215061 ATT
1 ATT
72215064 TCATATAGTT
Statistics
Matches: 44, Mismatches: 7, Indels: 9
0.73 0.12 0.15
Matches are distributed among these distances:
11 1 0.02
12 7 0.16
13 21 0.48
14 14 0.32
15 1 0.02
ACGTcount: A:0.37, C:0.21, G:0.00, T:0.43
Consensus pattern (13 bp):
ATTCTATATAACC
Found at i:72215077 original size:26 final size:24
Alignment explanation
Indices: 72214916--72215078 Score: 85
Period size: 27 Copynumber: 6.2 Consensus size: 24
72214906 CCATATAAAC
72214916 ATTTCATATAA-CACTTCATATAATT
1 ATTTCATATAACCA-TTCATAT-ATT
72214941 ATTTCCATATAACCTATTCATATAATT
1 ATTT-CATATAACC-ATTCATAT-ATT
* * * * * **
72214968 ATTTCGTTTATCTAAATCCATATAAC
1 ATTTCATATAAC--CATTCATATATT
*
72214994 AGATTCATATAACCATTCTATATATCT
1 A-TTTCATATAACCATTC-ATATAT-T
* *
72215021 ATTTCTATATAACCAATTCTTATAATC
1 ATTTC-ATATAACC-ATTCATAT-ATT
*
72215048 ATTTCACATAACCATTTCATATAGTT
1 ATTTCATATAACCA-TTCATATA-TT
72215074 ATTTC
1 ATTTC
72215079 TAAGTGTTAA
Statistics
Matches: 104, Mismatches: 21, Indels: 25
0.69 0.14 0.17
Matches are distributed among these distances:
25 9 0.09
26 41 0.39
27 47 0.45
28 7 0.07
ACGTcount: A:0.36, C:0.18, G:0.02, T:0.44
Consensus pattern (24 bp):
ATTTCATATAACCATTCATATATT
Found at i:72216216 original size:60 final size:59
Alignment explanation
Indices: 72216081--72216219 Score: 147
Period size: 60 Copynumber: 2.3 Consensus size: 59
72216071 TTTAGTGTTA
*
72216081 ACTGGGTCTTAGCCCATATCAATATTAATCTGGGCCATAACCCCTTACAGTAACAGAGTAT
1 ACTGGGTCTT-GCCCATATCAATATTAATCTGGGCCATAACCCATTACAGT-ACAGAGTAT
* * ** * *
72216142 ACTGGGCCTAGCCCATATCGGTATTAATCTGGGCCGTAGCCCTATTACAAGT-C-GAGATAT
1 ACTGGGTCTTGCCCATATCAATATTAATCTGGGCCATAACCC-ATTAC-AGTACAGAG-TAT
*
72216202 ATTGGGTCTTGCCCATAT
1 ACTGGGTCTTGCCCATAT
72216220 TAACACAGTT
Statistics
Matches: 65, Mismatches: 10, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
59 3 0.05
60 47 0.72
61 12 0.18
62 3 0.05
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (59 bp):
ACTGGGTCTTGCCCATATCAATATTAATCTGGGCCATAACCCATTACAGTACAGAGTAT
Found at i:72218646 original size:23 final size:23
Alignment explanation
Indices: 72218606--72218650 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
72218596 TTTTATAAAC
72218606 ATATCTAATAATAAAATTTTCAA
1 ATATCTAATAATAAAATTTTCAA
72218629 ATATC-AATAATAATAATTTTCA
1 ATATCTAATAATAA-AATTTTCA
72218651 TAAAAATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 8 0.38
23 13 0.62
ACGTcount: A:0.51, C:0.09, G:0.00, T:0.40
Consensus pattern (23 bp):
ATATCTAATAATAAAATTTTCAA
Found at i:72224833 original size:2 final size:2
Alignment explanation
Indices: 72224811--72224868 Score: 91
Period size: 2 Copynumber: 29.5 Consensus size: 2
72224801 AATAAACTTA
* *
72224811 AT AT A- AT AT AC AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
72224852 AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT A
72224869 ATAAACTAAT
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
1 1 0.02
2 50 0.98
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:72227721 original size:40 final size:40
Alignment explanation
Indices: 72227647--72227788 Score: 207
Period size: 40 Copynumber: 3.6 Consensus size: 40
72227637 AACCCAAGTA
* *
72227647 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
* *
72227686 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* *
72227726 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACACATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
72227766 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
72227789 CATTCGAATA
Statistics
Matches: 93, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
39 12 0.13
40 78 0.84
41 3 0.03
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:72234836 original size:43 final size:43
Alignment explanation
Indices: 72234700--72234857 Score: 178
Period size: 43 Copynumber: 3.7 Consensus size: 43
72234690 ATAGGATTTC
* *
72234700 GTGTAAGACCATGTCTGGGACGTTGGCATCGACT-TCTGTTTTAT
1 GTGTAAGACCATGTCTGGGACGTTGGCATCGA-TGTTTG-ATTAT
* ** *
72234744 GTGTAAGACCATGTCTGGGACATCAGCATCG-TGTTTGATTTT
1 GTGTAAGACCATGTCTGGGACGTTGGCATCGATGTTTGATTAT
* *
72234786 GTGTAAGACCCTGTCTGGGACAG-TGGCATCGATGTTTGATTAC
1 GTGTAAGACCATGTCTGGGAC-GTTGGCATCGATGTTTGATTAT
* *
72234829 ATGTAAGACCACGTCTGGGACGTTGGCAT
1 GTGTAAGACCATGTCTGGGACGTTGGCAT
72234858 TGTATATGTT
Statistics
Matches: 95, Mismatches: 15, Indels: 9
0.80 0.13 0.08
Matches are distributed among these distances:
42 31 0.33
43 36 0.38
44 28 0.29
ACGTcount: A:0.21, C:0.18, G:0.28, T:0.32
Consensus pattern (43 bp):
GTGTAAGACCATGTCTGGGACGTTGGCATCGATGTTTGATTAT
Found at i:72240257 original size:25 final size:24
Alignment explanation
Indices: 72240223--72240305 Score: 78
Period size: 25 Copynumber: 3.3 Consensus size: 24
72240213 TCATGGACAT
72240223 GTATGCTCATACGAGCTATGAATCG
1 GTATGCTCATACGAGCTAT-AATCG
**
72240248 GTATGCTCATTTGAGCTATAGATCG
1 GTATGCTCATACGAGCTATA-ATCG
* * *
72240273 GTATCCTC-TCACAAGCTATAAATTG
1 GTATGCTCAT-ACGAGCTAT-AATCG
72240298 GTATGCTC
1 GTATGCTC
72240306 TTGCTGTAAC
Statistics
Matches: 47, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
24 2 0.04
25 44 0.94
26 1 0.02
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (24 bp):
GTATGCTCATACGAGCTATAATCG
Found at i:72246025 original size:46 final size:47
Alignment explanation
Indices: 72245843--72246054 Score: 179
Period size: 46 Copynumber: 4.6 Consensus size: 47
72245833 TTATTTGTGT
* *
72245843 GCCAGTGTAAGACATGTTTGGGACATGCATCGGCCAC-A-TTGTGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACTAGATGT-AGA
* * *
72245889 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAG-CATTGAGACG-AGA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACT-AGATGTAGA
* * * * * * *
72245937 GCTAATGTAACAAATGTCTGGGACATGCATCGACCTCGAGATGTA-A
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACTAGATGTAGA
**
72245983 GCCAGTGTAAGACATGTCTGGGACATGCATCGGTTACTAGATGT---
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACTAGATGTAGA
* *
72246027 GTCAGTGTAAGACCATGTATGGGACATG
1 GCCAGTGTAAGA-CATGTCTGGGACATG
72246055 GCATTGGCAC
Statistics
Matches: 132, Mismatches: 26, Indels: 17
0.75 0.15 0.10
Matches are distributed among these distances:
44 11 0.08
45 14 0.11
46 57 0.43
47 30 0.23
48 18 0.14
49 1 0.01
50 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (47 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACTAGATGTAGA
Found at i:72246150 original size:50 final size:48
Alignment explanation
Indices: 72246027--72246205 Score: 184
Period size: 50 Copynumber: 3.7 Consensus size: 48
72246017 TACTAGATGT
* **
72246027 GTCAGTGTAAGACCATGTATGGGACATGGCATTGGCACG-TATAAAG-
1 GTCAGTGTAAGACCATGTTTGGGACATGGCATTGGCACGATATTGAGA
* *
72246073 GTTTCAATGTAAGACCATGTCTGGGACATGGCATTGGCACGGATATGTGAGA
1 G--TCAGTGTAAGACCATGTTTGGGACATGGCATTGGCAC-GATAT-TGAGA
* * * * *
72246125 G-CTAGTGTAAGACCATGTTTGGGACATGGCGTCGGCCTCGATTTTGATA
1 GTC-AGTGTAAGACCATGTTTGGGACATGGCATTGG-CACGATATTGAGA
*
72246174 GTCAGTGTAAGACTATGTTTGGGACATGGCAT
1 GTCAGTGTAAGACCATGTTTGGGACATGGCAT
72246206 CGATTTGATG
Statistics
Matches: 111, Mismatches: 13, Indels: 15
0.80 0.09 0.11
Matches are distributed among these distances:
46 1 0.01
48 35 0.32
49 34 0.31
50 36 0.32
51 4 0.04
52 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.31, T:0.28
Consensus pattern (48 bp):
GTCAGTGTAAGACCATGTTTGGGACATGGCATTGGCACGATATTGAGA
Found at i:72249113 original size:25 final size:25
Alignment explanation
Indices: 72249085--72249147 Score: 90
Period size: 25 Copynumber: 2.5 Consensus size: 25
72249075 GCTTTTCTTC
* *
72249085 TTCCAATTAAACTTTGTTTTTAGTT
1 TTCCACTTAAACTTTATTTTTAGTT
*
72249110 TTCCACTTAAAATTTATTTTTAGTT
1 TTCCACTTAAACTTTATTTTTAGTT
*
72249135 TTACACTTAAACT
1 TTCCACTTAAACT
72249148 CTGATTAGTG
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.29, C:0.14, G:0.05, T:0.52
Consensus pattern (25 bp):
TTCCACTTAAACTTTATTTTTAGTT
Found at i:72257794 original size:29 final size:27
Alignment explanation
Indices: 72257760--72257862 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
72257750 TACTCAATCA
*
72257760 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
72257789 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
72257818 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
72257847 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
72257863 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:72265587 original size:29 final size:27
Alignment explanation
Indices: 72265553--72265655 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
72265543 TACTCAATCA
*
72265553 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
72265582 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
72265611 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
72265640 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
72265656 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:72272526 original size:26 final size:26
Alignment explanation
Indices: 72272491--72272548 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 26
72272481 TCTCCCAATT
72272491 AAACTC-TTTTTTTAGTTTC-CTACTA
1 AAACTCTTTTTTTTAGTTTCAC-ACTA
* *
72272516 AAACTCTTTTTTTTTGTTTCACACTT
1 AAACTCTTTTTTTTAGTTTCACACTA
72272542 AAACTCT
1 AAACTCT
72272549 AATTAATGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
25 6 0.21
26 22 0.76
27 1 0.03
ACGTcount: A:0.24, C:0.21, G:0.03, T:0.52
Consensus pattern (26 bp):
AAACTCTTTTTTTTAGTTTCACACTA
Found at i:72273728 original size:21 final size:22
Alignment explanation
Indices: 72273702--72273792 Score: 71
Period size: 22 Copynumber: 4.0 Consensus size: 22
72273692 ACGAAAACAA
*
72273702 AACAATAAAACACCA-CAAAAG
1 AACAATAAAACACCACCAAAAC
*
72273723 AACAATAAAACAGCACCAAAAC
1 AACAATAAAACACCACCAAAAC
* *
72273745 AAC-ATCAAAACAGCATC-AAAC
1 AACAAT-AAAACACCACCAAAAC
*
72273766 AACAGAAAAAACAGCATCACCAAAAC
1 AACA-ATAAAACA-C--CACCAAAAC
72273792 A
1 A
72273793 GCACCAAAAA
Statistics
Matches: 56, Mismatches: 6, Indels: 11
0.77 0.08 0.15
Matches are distributed among these distances:
21 23 0.41
22 24 0.43
23 1 0.02
25 3 0.05
26 5 0.09
ACGTcount: A:0.63, C:0.26, G:0.05, T:0.05
Consensus pattern (22 bp):
AACAATAAAACACCACCAAAAC
Found at i:72273743 original size:11 final size:11
Alignment explanation
Indices: 72273729--72273801 Score: 51
Period size: 11 Copynumber: 6.4 Consensus size: 11
72273719 AAAGAACAAT
72273729 AAAACAGCACC
1 AAAACAGCACC
* *
72273740 AAAACAACATC
1 AAAACAGCACC
*
72273751 AAAACAGCATCA
1 AAAACAGCA-CC
*
72273763 AACAACAG-A-A
1 AA-AACAGCACC
72273773 AAAACAGCATCACC
1 AAAACAG---CACC
72273787 AAAACAGCACC
1 AAAACAGCACC
72273798 AAAA
1 AAAA
72273802 ACCTACAAAA
Statistics
Matches: 49, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
9 5 0.10
10 3 0.06
11 25 0.51
12 3 0.06
13 6 0.12
14 7 0.14
ACGTcount: A:0.60, C:0.29, G:0.07, T:0.04
Consensus pattern (11 bp):
AAAACAGCACC
Found at i:72273748 original size:22 final size:21
Alignment explanation
Indices: 72273702--72273781 Score: 83
Period size: 22 Copynumber: 3.7 Consensus size: 21
72273692 ACGAAAACAA
* *
72273702 AACAATAAAACACCACAAAAG
1 AACAATAAAACAGCACAAAAC
72273723 AACAATAAAACAGCACCAAAAC
1 AACAATAAAACAGCA-CAAAAC
72273745 AAC-ATCAAAACAGCATC-AAAC
1 AACAAT-AAAACAGCA-CAAAAC
*
72273766 AACAGAAAAAACAGCA
1 AACA-ATAAAACAGCA
72273782 TCACCAAAAC
Statistics
Matches: 51, Mismatches: 4, Indels: 7
0.82 0.06 0.11
Matches are distributed among these distances:
21 23 0.45
22 27 0.53
23 1 0.02
ACGTcount: A:0.64, C:0.25, G:0.06, T:0.05
Consensus pattern (21 bp):
AACAATAAAACAGCACAAAAC
Found at i:72277391 original size:16 final size:16
Alignment explanation
Indices: 72277366--72277542 Score: 91
Period size: 16 Copynumber: 11.3 Consensus size: 16
72277356 CAAAAACTAT
*
72277366 AAACACAATAGCAGAA
1 AAACCCAATAGCAGAA
* *
72277382 AAACCTAATAGAAG-A
1 AAACCCAATAGCAGAA
*
72277397 AAACCATAATA--AGAA
1 AAACC-CAATAGCAGAA
* * * *
72277412 AAACCACAAAAAC-TAT
1 AAACC-CAATAGCAGAA
* *
72277428 AAACACAATAGCATAA
1 AAACCCAATAGCAGAA
72277444 AAACCCAATAGCAGAA
1 AAACCCAATAGCAGAA
* *
72277460 AAACCTAATAGAAG-A
1 AAACCCAATAGCAGAA
*
72277475 AAACCATAATA--AGAA
1 AAACC-CAATAGCAGAA
* * * *
72277490 AAACCACAAAAAC-TAT
1 AAACC-CAATAGCAGAA
* *
72277506 AAACACAATAGCATAA
1 AAACCCAATAGCAGAA
72277522 AAACCCAATAGCAGAA
1 AAACCCAATAGCAGAA
72277538 AAACC
1 AAACC
72277543 AGAATAAGAA
Statistics
Matches: 126, Mismatches: 25, Indels: 20
0.74 0.15 0.12
Matches are distributed among these distances:
14 4 0.03
15 42 0.33
16 80 0.63
ACGTcount: A:0.62, C:0.20, G:0.08, T:0.11
Consensus pattern (16 bp):
AAACCCAATAGCAGAA
Found at i:72277423 original size:62 final size:63
Alignment explanation
Indices: 72277324--72277469 Score: 233
Period size: 62 Copynumber: 2.3 Consensus size: 63
72277314 CTAGAGACCG
* *
72277324 CAATAGCAGAAAAACCAGAATAAGAAAACCCACAAAAACTATAAACACAATAGCAGAAAAACC
1 CAATAGCAGAAAAACCATAATAAGAAAAACCACAAAAACTATAAACACAATAGCAGAAAAACC
* * *
72277387 TAATAGAAG-AAAACCATAATAAGAAAAACCACAAAAACTATAAACACAATAGCATAAAAACC
1 CAATAGCAGAAAAACCATAATAAGAAAAACCACAAAAACTATAAACACAATAGCAGAAAAACC
72277449 CAATAGCAGAAAAACC-TAATA
1 CAATAGCAGAAAAACCATAATA
72277470 GAAGAAAACC
Statistics
Matches: 75, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
62 62 0.83
63 13 0.17
ACGTcount: A:0.61, C:0.20, G:0.08, T:0.11
Consensus pattern (63 bp):
CAATAGCAGAAAAACCATAATAAGAAAAACCACAAAAACTATAAACACAATAGCAGAAAAACC
Found at i:72277463 original size:78 final size:78
Alignment explanation
Indices: 72277366--72277542 Score: 345
Period size: 78 Copynumber: 2.3 Consensus size: 78
72277356 CAAAAACTAT
*
72277366 AAACACAATAGCAGAAAAACCTAATAGAAGAAAACCATAATAAGAAAAACCACAAAAACTATAAA
1 AAACCCAATAGCAGAAAAACCTAATAGAAGAAAACCATAATAAGAAAAACCACAAAAACTATAAA
72277431 CACAATAGCATAA
66 CACAATAGCATAA
72277444 AAACCCAATAGCAGAAAAACCTAATAGAAGAAAACCATAATAAGAAAAACCACAAAAACTATAAA
1 AAACCCAATAGCAGAAAAACCTAATAGAAGAAAACCATAATAAGAAAAACCACAAAAACTATAAA
72277509 CACAATAGCATAA
66 CACAATAGCATAA
72277522 AAACCCAATAGCAGAAAAACC
1 AAACCCAATAGCAGAAAAACC
72277543 AGAATAAGAA
Statistics
Matches: 98, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
78 98 1.00
ACGTcount: A:0.62, C:0.20, G:0.08, T:0.11
Consensus pattern (78 bp):
AAACCCAATAGCAGAAAAACCTAATAGAAGAAAACCATAATAAGAAAAACCACAAAAACTATAAA
CACAATAGCATAA
Found at i:72277515 original size:62 final size:63
Alignment explanation
Indices: 72277444--72277589 Score: 213
Period size: 63 Copynumber: 2.3 Consensus size: 63
72277434 AATAGCATAA
* * *
72277444 AAACCCAATAGCAGAAAAACCTAATAGAAG-AAAACCATAATAAGAAAAACCACAAAAACTAT
1 AAACACAATAGCAGAAAAACCCAATAGAAGAAAAACCAGAATAAGAAAAACCACAAAAACTAT
* * *
72277506 AAACACAATAGCATAAAAACCCAATAGCAGAAAAACCAGAATAAGAAACACCACAAAAACTAT
1 AAACACAATAGCAGAAAAACCCAATAGAAGAAAAACCAGAATAAGAAAAACCACAAAAACTAT
* *
72277569 GAACAGAATAGCAGAAAAACC
1 AAACACAATAGCAGAAAAACC
72277590 AAAAGCATAA
Statistics
Matches: 74, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
62 26 0.35
63 48 0.65
ACGTcount: A:0.60, C:0.21, G:0.10, T:0.10
Consensus pattern (63 bp):
AAACACAATAGCAGAAAAACCCAATAGAAGAAAAACCAGAATAAGAAAAACCACAAAAACTAT
Found at i:72277991 original size:26 final size:26
Alignment explanation
Indices: 72277955--72278007 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
72277945 AGAGGAAGTT
72277955 AGGAAAGCTGAGCAAAATAAAGGGTA
1 AGGAAAGCTGAGCAAAATAAAGGGTA
*
72277981 AGGACAGCTGAGCAAAATAAAGGGTA
1 AGGAAAGCTGAGCAAAATAAAGGGTA
72278007 A
1 A
72278008 AGGTAAAGTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.49, C:0.09, G:0.30, T:0.11
Consensus pattern (26 bp):
AGGAAAGCTGAGCAAAATAAAGGGTA
Found at i:72287704 original size:30 final size:30
Alignment explanation
Indices: 72287668--72287725 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 30
72287658 TTTATGCATT
*
72287668 TTAAGCTG-TAGGAATAAATGTTCATCTTAA
1 TTAAGCTGCT-GGAATAAATGCTCATCTTAA
72287698 TTAAGCTGCTGGAATAAATGCTCATCTT
1 TTAAGCTGCTGGAATAAATGCTCATCTT
72287726 CGTTAATTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 25 0.96
31 1 0.04
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.36
Consensus pattern (30 bp):
TTAAGCTGCTGGAATAAATGCTCATCTTAA
Found at i:72287744 original size:34 final size:34
Alignment explanation
Indices: 72287694--72287850 Score: 197
Period size: 34 Copynumber: 4.6 Consensus size: 34
72287684 AATGTTCATC
* * * *
72287694 TTAATTAAGCTGCTGGAATAAATGCTCATCTTCG
1 TTAATTGAGTTGCTGGAATAAATGCTTATCTTAG
* *
72287728 TTAATTGAGTTCCTGGAATAAATGCTTATTTTAG
1 TTAATTGAGTTGCTGGAATAAATGCTTATCTTAG
* * *
72287762 TTAATTGAGTTGCTAGAATAAATGTTTATTTTAG
1 TTAATTGAGTTGCTGGAATAAATGCTTATCTTAG
*
72287796 TTAATTGAGTTGCTTGAATAAATGCTTATCTTAG
1 TTAATTGAGTTGCTGGAATAAATGCTTATCTTAG
* * *
72287830 TTTATTTAATTGCTGGAATAA
1 TTAATTGAGTTGCTGGAATAA
72287851 CTTATTGTTA
Statistics
Matches: 107, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
34 107 1.00
ACGTcount: A:0.31, C:0.09, G:0.17, T:0.43
Consensus pattern (34 bp):
TTAATTGAGTTGCTGGAATAAATGCTTATCTTAG
Found at i:72287936 original size:41 final size:41
Alignment explanation
Indices: 72287856--72287968 Score: 183
Period size: 41 Copynumber: 2.8 Consensus size: 41
72287846 AATAACTTAT
*
72287856 TGTTAAATATGTTTATTTACAGTTT-TTAAATTAAGTTAAG
1 TGTTAAATGTGTTTATTTACAGTTTATTAAATTAAGTTAAG
* *
72287896 TGTTAAATGTGTTTATCTACAATTTATTAAATTAAGTTAAG
1 TGTTAAATGTGTTTATTTACAGTTTATTAAATTAAGTTAAG
*
72287937 TGTTAAATGTGTTTATTTACAGTGTATTAAAT
1 TGTTAAATGTGTTTATTTACAGTTTATTAAAT
72287969 AAGCTTATTA
Statistics
Matches: 66, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
40 22 0.33
41 44 0.67
ACGTcount: A:0.35, C:0.04, G:0.13, T:0.49
Consensus pattern (41 bp):
TGTTAAATGTGTTTATTTACAGTTTATTAAATTAAGTTAAG
Found at i:72290799 original size:47 final size:47
Alignment explanation
Indices: 72290671--72290907 Score: 393
Period size: 49 Copynumber: 5.0 Consensus size: 47
72290661 TGTAGGAGAT
*
72290671 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGT
1 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGA
72290718 GTATATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGA
1 GTATAT--ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGA
* * *
72290767 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGT
1 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGA
72290814 GTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGA
1 G--TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGA
*
72290863 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
72290908 CATATGTGTG
Statistics
Matches: 178, Mismatches: 8, Indels: 8
0.92 0.04 0.04
Matches are distributed among these distances:
47 88 0.49
49 90 0.51
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.29
Consensus pattern (47 bp):
GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGA
Found at i:72290835 original size:96 final size:96
Alignment explanation
Indices: 72290671--72290907 Score: 447
Period size: 96 Copynumber: 2.5 Consensus size: 96
72290661 TGTAGGAGAT
*
72290671 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAG
1 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACATGTGATAAG
72290736 GCCTAATGGCCAATGTGATGAATGTGAAAGA
66 GCCTAATGGCCAATGTGATGAATGTGAAAGA
* *
72290767 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATATATGTGATAAG
1 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACATGTGATAAG
72290832 GCCTAATGGCCAATGTGATGAATGTGAAAGA
66 GCCTAATGGCCAATGTGATGAATGTGAAAGA
72290863 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
72290908 CATATGTGTG
Statistics
Matches: 137, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
96 137 1.00
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.29
Consensus pattern (96 bp):
GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACATGTGATAAG
GCCTAATGGCCAATGTGATGAATGTGAAAGA
Found at i:72290953 original size:48 final size:48
Alignment explanation
Indices: 72290899--72291098 Score: 355
Period size: 48 Copynumber: 4.2 Consensus size: 48
72290889 CGATGTGATG
*
72290899 AATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
* *
72290947 AATGTGAAATATATGTGTGATGTGTATATGTGGTAAAGCCGAAGGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
72290995 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
* *
72291043 AATGTGAAATATATGTGTGATGTGTATGTGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
72291091 AATGTGAA
1 AATGTGAA
72291099 TGTTGTAACA
Statistics
Matches: 145, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 145 1.00
ACGTcount: A:0.33, C:0.07, G:0.29, T:0.32
Consensus pattern (48 bp):
AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
Found at i:72291192 original size:37 final size:37
Alignment explanation
Indices: 72291138--72291228 Score: 164
Period size: 37 Copynumber: 2.4 Consensus size: 37
72291128 AACTTGGAAA
*
72291138 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGTAAGACCCGATGACTACGTGTGGAGAT
72291176 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
72291213 TATGTCCGGGTAAGAC
1 TATGTCCGGGTAAGAC
72291229 TTCGTAATAA
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
37 48 0.92
38 4 0.08
ACGTcount: A:0.23, C:0.19, G:0.33, T:0.25
Consensus pattern (37 bp):
TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
Found at i:72296383 original size:30 final size:30
Alignment explanation
Indices: 72296347--72296410 Score: 74
Period size: 30 Copynumber: 2.1 Consensus size: 30
72296337 TCCATGCATT
* *
72296347 TTAAGCTGCAAGAATAAATGCTTATCTTAA
1 TTAAGCTACAAGAATAAATGCTCATCTTAA
** * *
72296377 TTAAGCTACTGGAATAAATTCTCATCTTAG
1 TTAAGCTACAAGAATAAATGCTCATCTTAA
72296407 TTAA
1 TTAA
72296411 TTGAGTTGCT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.38, C:0.14, G:0.12, T:0.36
Consensus pattern (30 bp):
TTAAGCTACAAGAATAAATGCTCATCTTAA
Found at i:72296495 original size:34 final size:34
Alignment explanation
Indices: 72296385--72296476 Score: 139
Period size: 34 Copynumber: 2.7 Consensus size: 34
72296375 AATTAAGCTA
* *
72296385 CTGGAATAAATTCTCATCTTAGTTAATTGAGTTG
1 CTGGAATAAATGCTTATCTTAGTTAATTGAGTTG
* * *
72296419 CTGGAATAAATGTTTATTTTAGTTAATTGCGTTG
1 CTGGAATAAATGCTTATCTTAGTTAATTGAGTTG
72296453 CTGGAATAAATGCTTATCTTAGTT
1 CTGGAATAAATGCTTATCTTAGTT
72296477 TATGTAATTG
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 51 1.00
ACGTcount: A:0.28, C:0.10, G:0.18, T:0.43
Consensus pattern (34 bp):
CTGGAATAAATGCTTATCTTAGTTAATTGAGTTG
Found at i:72296588 original size:41 final size:41
Alignment explanation
Indices: 72296501--72296613 Score: 192
Period size: 41 Copynumber: 2.8 Consensus size: 41
72296491 AATAACTTAT
*
72296501 TGTTAAATATGTTTATTTACAGTTT-TTAAATTAAGTCAAG
1 TGTTAAATGTGTTTATTTACAGTTTATTAAATTAAGTCAAG
* *
72296541 TGTTAAATGTGTTTATTTACAGTTTATTAAGTTAAGTTAAG
1 TGTTAAATGTGTTTATTTACAGTTTATTAAATTAAGTCAAG
72296582 TGTTAAATGTGTTTATTTACAGTTTATTAAAT
1 TGTTAAATGTGTTTATTTACAGTTTATTAAAT
72296614 AAGCTTATTA
Statistics
Matches: 68, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
40 24 0.35
41 44 0.65
ACGTcount: A:0.33, C:0.04, G:0.14, T:0.50
Consensus pattern (41 bp):
TGTTAAATGTGTTTATTTACAGTTTATTAAATTAAGTCAAG
Found at i:72298462 original size:38 final size:39
Alignment explanation
Indices: 72298349--72298491 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
72298339 CCGCACAAAG
*
72298349 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCACAATTTGCACAATT
* * *
72298389 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
72298428 GCCTTCGGGCTTAGCCCGG-TATCACAATTTGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
72298466 GCCTTCGGGCTTAGCCCGGATATCAC
1 GCCTTCGGGCTTAGCCCGGATATCAC
72298492 TCGAACATTC
Statistics
Matches: 95, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
38 35 0.37
39 51 0.54
40 9 0.09
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
Found at i:72298470 original size:77 final size:79
Alignment explanation
Indices: 72298309--72298490 Score: 269
Period size: 77 Copynumber: 2.3 Consensus size: 79
72298299 TCGTTCAAAC
* * **
72298309 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
72298374 ACAATTTGCACAATT
65 ACAATTTGCACAATT
* ** *
72298389 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGG-TATCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
72298452 CAATTTGCACAATT
66 CAATTTGCACAATT
72298466 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
72298491 CTCGAACATT
Statistics
Matches: 94, Mismatches: 8, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
77 44 0.47
78 9 0.10
79 32 0.34
80 9 0.10
ACGTcount: A:0.23, C:0.30, G:0.23, T:0.25
Consensus pattern (79 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
CAATTTGCACAATT
Found at i:72306486 original size:38 final size:39
Alignment explanation
Indices: 72306373--72306515 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
72306363 CCGCACAAAG
*
72306373 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCACAATTTGCACAATT
* * *
72306413 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
72306452 GCCTTCGGGCTTAGCCCGG-TATCACAATTTGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
72306490 GCCTTCGGGCTTAGCCCGGATATCAC
1 GCCTTCGGGCTTAGCCCGGATATCAC
72306516 TCGAACATTC
Statistics
Matches: 95, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
38 35 0.37
39 51 0.54
40 9 0.09
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
Found at i:72306494 original size:77 final size:79
Alignment explanation
Indices: 72306333--72306514 Score: 269
Period size: 77 Copynumber: 2.3 Consensus size: 79
72306323 TCGTTCAAAC
* * **
72306333 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
72306398 ACAATTTGCACAATT
65 ACAATTTGCACAATT
* ** *
72306413 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGG-TATCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
72306476 CAATTTGCACAATT
66 CAATTTGCACAATT
72306490 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
72306515 CTCGAACATT
Statistics
Matches: 94, Mismatches: 8, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
77 44 0.47
78 9 0.10
79 32 0.34
80 9 0.10
ACGTcount: A:0.23, C:0.30, G:0.23, T:0.25
Consensus pattern (79 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
CAATTTGCACAATT
Found at i:72310815 original size:16 final size:16
Alignment explanation
Indices: 72310796--72310834 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
72310786 GGGATCAGTA
*
72310796 AACATGCGTAAATTTC
1 AACATGCGAAAATTTC
*
72310812 AACATGCGAAAATTTT
1 AACATGCGAAAATTTC
72310828 AACATGC
1 AACATGC
72310835 TCAATACATA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.41, C:0.18, G:0.13, T:0.28
Consensus pattern (16 bp):
AACATGCGAAAATTTC
Found at i:72313026 original size:20 final size:20
Alignment explanation
Indices: 72312984--72313031 Score: 62
Period size: 21 Copynumber: 2.4 Consensus size: 20
72312974 TCAGTATTAA
*
72312984 ATATTTTTATTTACTTTTTT
1 ATATTTTTATTTACTTTTGT
*
72313004 ATAATTTTTCTTTAC-TTTGT
1 AT-ATTTTTATTTACTTTTGT
72313024 ATATTTTT
1 ATATTTTT
72313032 TTGTTTGATA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 6 0.24
20 8 0.32
21 11 0.44
ACGTcount: A:0.21, C:0.06, G:0.02, T:0.71
Consensus pattern (20 bp):
ATATTTTTATTTACTTTTGT
Found at i:72313032 original size:20 final size:21
Alignment explanation
Indices: 72312986--72313032 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 21
72312976 AGTATTAAAT
*
72312986 ATTTTTATTTACTTTTTTATA
1 ATTTTTATTTACTTTTGTATA
*
72313007 ATTTTTCTTTAC-TTTGTATA
1 ATTTTTATTTACTTTTGTATA
*
72313027 TTTTTT
1 ATTTTT
72313033 TGTTTGATAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 12 0.52
21 11 0.48
ACGTcount: A:0.19, C:0.06, G:0.02, T:0.72
Consensus pattern (21 bp):
ATTTTTATTTACTTTTGTATA
Found at i:72339842 original size:15 final size:15
Alignment explanation
Indices: 72339822--72339890 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
72339812 GTATCTTGGG
72339822 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
72339837 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
72339852 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
72339867 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
72339882 TTTCTTTAT
1 TTTCTTTAT
72339891 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:72339891 original size:30 final size:30
Alignment explanation
Indices: 72339813--72339900 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
72339803 CATAGTATCG
* * * *
72339813 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
72339843 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
72339873 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
72339901 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:72344244 original size:27 final size:27
Alignment explanation
Indices: 72344214--72344269 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
72344204 AATAAAGTAC
*
72344214 ATTCTCTATTGCTTT-CATATTTTTTTT
1 ATTCTCTATT-CTTTCCACATTTTTTTT
* *
72344241 ATTCTTTATTCTTTCCACCTTTTTTTT
1 ATTCTCTATTCTTTCCACATTTTTTTT
72344268 AT
1 AT
72344270 ACCAGTAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 4 0.16
27 21 0.84
ACGTcount: A:0.14, C:0.18, G:0.02, T:0.66
Consensus pattern (27 bp):
ATTCTCTATTCTTTCCACATTTTTTTT
Found at i:72344291 original size:8 final size:8
Alignment explanation
Indices: 72344278--72344323 Score: 51
Period size: 8 Copynumber: 5.9 Consensus size: 8
72344268 ATACCAGTAA
72344278 TTATTTTT
1 TTATTTTT
72344286 TTATTTTT
1 TTATTTTT
*
72344294 TCTA-ATTT
1 T-TATTTTT
*
72344302 TAATTTTT
1 TTATTTTT
72344310 TTATTTTT
1 TTATTTTT
72344318 TT-TTTT
1 TTATTTT
72344324 AATTTAGAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
7 5 0.16
8 25 0.78
9 2 0.06
ACGTcount: A:0.15, C:0.02, G:0.00, T:0.83
Consensus pattern (8 bp):
TTATTTTT
Found at i:72344305 original size:27 final size:27
Alignment explanation
Indices: 72344275--72344328 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
72344265 TTTATACCAG
72344275 TAATTATTTTT-TTATTTTTTCTAATTT
1 TAATT-TTTTTATTATTTTTTCTAATTT
* *
72344302 TAATTTTTTTATTTTTTTTTTTAATTT
1 TAATTTTTTTATTATTTTTTCTAATTT
72344329 AGAATGTATT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 5 0.21
27 19 0.79
ACGTcount: A:0.20, C:0.02, G:0.00, T:0.78
Consensus pattern (27 bp):
TAATTTTTTTATTATTTTTTCTAATTT
Found at i:72344633 original size:11 final size:11
Alignment explanation
Indices: 72344619--72344663 Score: 54
Period size: 11 Copynumber: 3.9 Consensus size: 11
72344609 CTTTGTAATC
72344619 ATAATTATTTT
1 ATAATTATTTT
72344630 ATAATTATTTATT
1 ATAATTA-TT-TT
* *
72344643 ATTATGATTTT
1 ATAATTATTTT
72344654 ATAATTATTT
1 ATAATTATTT
72344664 AAGCAATTTA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
11 17 0.61
12 4 0.14
13 7 0.25
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (11 bp):
ATAATTATTTT
Found at i:72344759 original size:2 final size:2
Alignment explanation
Indices: 72344752--72344796 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
72344742 AGGTTAAGTA
72344752 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
72344794 AT A
1 AT A
72344797 CACGGTAGGT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:72345567 original size:22 final size:22
Alignment explanation
Indices: 72345528--72345583 Score: 53
Period size: 22 Copynumber: 2.6 Consensus size: 22
72345518 TAGCCATATA
* * *
72345528 ATAAATTATTAATATAATAAAT
1 ATAATTTATTATTTTAATAAAT
*
72345550 ATAATTTATTATTTTAATTAAT
1 ATAATTTATTATTTTAATAAAT
*
72345572 -T-ATTTAATATTT
1 ATAATTTATTATTT
72345584 CAATTTTATT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
20 10 0.34
21 1 0.03
22 18 0.62
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (22 bp):
ATAATTTATTATTTTAATAAAT
Found at i:72345623 original size:15 final size:17
Alignment explanation
Indices: 72345596--72345631 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
72345586 ATTTTATTTT
72345596 AATAATAAATTTTAAA-
1 AATAATAAATTTTAAAC
72345612 AATAAT-AATTTTAAAC
1 AATAATAAATTTTAAAC
72345628 AATA
1 AATA
72345632 TTATTCACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (17 bp):
AATAATAAATTTTAAAC
Found at i:72345684 original size:15 final size:15
Alignment explanation
Indices: 72345664--72345720 Score: 60
Period size: 15 Copynumber: 3.5 Consensus size: 15
72345654 ATTCAATATT
72345664 AATATTTTAATAATA
1 AATATTTTAATAATA
*
72345679 AATATTTATTACAATTATA
1 AATA-TT-TT--AATAATA
*
72345698 AATATATTAATAATA
1 AATATTTTAATAATA
72345713 AATATTTT
1 AATATTTT
72345721 GTAGTATAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
15 17 0.50
16 2 0.06
17 4 0.12
18 1 0.03
19 10 0.29
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:72346976 original size:39 final size:38
Alignment explanation
Indices: 72346880--72346976 Score: 149
Period size: 38 Copynumber: 2.5 Consensus size: 38
72346870 TAAAAAAAAG
* *
72346880 TTAAAAATTTTCTAAAAAATATGTAAAGAAAGTTAAAATT
1 TTAAAAAATTTCT--AAAATATGTAAAGAAACTTAAAATT
72346920 TTAAAAAATTTCTAAAATATGTAAAGAAACTTAAAATT
1 TTAAAAAATTTCTAAAATATGTAAAGAAACTTAAAATT
72346958 TTAAAAAAATTTCTAAAAT
1 TT-AAAAAATTTCTAAAAT
72346977 GATAATTTTT
Statistics
Matches: 54, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
38 26 0.48
39 16 0.30
40 12 0.22
ACGTcount: A:0.56, C:0.04, G:0.05, T:0.35
Consensus pattern (38 bp):
TTAAAAAATTTCTAAAATATGTAAAGAAACTTAAAATT
Found at i:72347666 original size:2 final size:2
Alignment explanation
Indices: 72347661--72347690 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
72347651 CTTTTTTGAA
72347661 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
72347691 TTCTTCTTCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:72348038 original size:13 final size:13
Alignment explanation
Indices: 72348020--72348045 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
72348010 TCATCTTTGA
72348020 TTTTTATTACAAG
1 TTTTTATTACAAG
72348033 TTTTTATTACAAG
1 TTTTTATTACAAG
72348046 CCACAATTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.08, T:0.54
Consensus pattern (13 bp):
TTTTTATTACAAG
Found at i:72351031 original size:4 final size:4
Alignment explanation
Indices: 72351022--72351063 Score: 66
Period size: 4 Copynumber: 10.2 Consensus size: 4
72351012 AACTTGAGCT
*
72351022 TTTA TTTA TTTA TTCA TTTTA TTTA TTTA TTTA TTTA TTTA T
1 TTTA TTTA TTTA TTTA -TTTA TTTA TTTA TTTA TTTA TTTA T
72351064 GTACAAGAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
4 32 0.91
5 3 0.09
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:72351043 original size:17 final size:17
Alignment explanation
Indices: 72351021--72351063 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 17
72351011 TAACTTGAGC
72351021 TTTTATTTATTTATTCA
1 TTTTATTTATTTATTCA
*
72351038 TTTTATTTATTTATTTA
1 TTTTATTTATTTATTCA
72351055 -TTTATTTAT
1 TTTTATTTAT
72351064 GTACAAGAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
16 9 0.36
17 16 0.64
ACGTcount: A:0.23, C:0.02, G:0.00, T:0.74
Consensus pattern (17 bp):
TTTTATTTATTTATTCA
Found at i:72351048 original size:21 final size:21
Alignment explanation
Indices: 72351022--72351061 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
72351012 AACTTGAGCT
72351022 TTTATTTATTTATTCATTTTA
1 TTTATTTATTTATTCATTTTA
*
72351043 TTTATTTATTTATTTATTT
1 TTTATTTATTTATTCATTT
72351062 ATGTACAAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.75
Consensus pattern (21 bp):
TTTATTTATTTATTCATTTTA
Found at i:72367516 original size:12 final size:12
Alignment explanation
Indices: 72367499--72367524 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
72367489 GAAAACAGAC
72367499 TTTTAGCGGCGT
1 TTTTAGCGGCGT
72367511 TTTTAGCGGCGT
1 TTTTAGCGGCGT
72367523 TT
1 TT
72367525 ATCCAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.15, G:0.31, T:0.46
Consensus pattern (12 bp):
TTTTAGCGGCGT
Found at i:72368948 original size:21 final size:22
Alignment explanation
Indices: 72368917--72368962 Score: 76
Period size: 21 Copynumber: 2.1 Consensus size: 22
72368907 TTAGCTAGTG
72368917 TTTAGAGTTTAGGGTTTAAGAT
1 TTTAGAGTTTAGGGTTTAAGAT
*
72368939 TTTA-AGTTTAGGGTTTAAGCT
1 TTTAGAGTTTAGGGTTTAAGAT
72368960 TTT
1 TTT
72368963 GGGTTTAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 19 0.83
22 4 0.17
ACGTcount: A:0.24, C:0.02, G:0.24, T:0.50
Consensus pattern (22 bp):
TTTAGAGTTTAGGGTTTAAGAT
Found at i:72369788 original size:25 final size:25
Alignment explanation
Indices: 72369748--72369819 Score: 126
Period size: 25 Copynumber: 2.9 Consensus size: 25
72369738 GTTTGCCTCG
72369748 ATTCTGAAATCCCCAATTTCCCTAA
1 ATTCTGAAATCCCCAATTTCCCTAA
* *
72369773 ATTTTTAAATCCCCAATTTCCCTAA
1 ATTCTGAAATCCCCAATTTCCCTAA
72369798 ATTCTGAAATCCCCAATTTCCC
1 ATTCTGAAATCCCCAATTTCCC
72369820 CATCTCCTCT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.31, C:0.32, G:0.03, T:0.35
Consensus pattern (25 bp):
ATTCTGAAATCCCCAATTTCCCTAA
Found at i:72374010 original size:21 final size:21
Alignment explanation
Indices: 72373984--72374031 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
72373974 TCAACTTAGA
72373984 GCGGAGGCAGCAGCGAGGGAG
1 GCGGAGGCAGCAGCGAGGGAG
*
72374005 GCGGAGGCAGTAGCGAGGGAG
1 GCGGAGGCAGCAGCGAGGGAG
72374026 GCGGAG
1 GCGGAG
72374032 CAGAACAGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.23, C:0.17, G:0.58, T:0.02
Consensus pattern (21 bp):
GCGGAGGCAGCAGCGAGGGAG
Found at i:72374397 original size:43 final size:43
Alignment explanation
Indices: 72374333--72374441 Score: 141
Period size: 43 Copynumber: 2.5 Consensus size: 43
72374323 ATTAGCGGCG
* *
72374333 TTTTTTAAAAAAGTGCTGCTAAAGACCATGACTTTTAGAAGCA
1 TTTTTTAAAAAAGTGCTGCTAAAGAACAGGACTTTTAGAAGCA
*
72374376 CTTTTTTAAAAAA-TGGC-GCTAAAGAACAGGACTTTTAGCAGCA
1 -TTTTTTAAAAAAGT-GCTGCTAAAGAACAGGACTTTTAGAAGCA
* *
72374419 TTTTTTAAAAAAGCGCCGCTAAA
1 TTTTTTAAAAAAGTGCTGCTAAA
72374442 AGTCCTGGTC
Statistics
Matches: 58, Mismatches: 4, Indels: 7
0.84 0.06 0.10
Matches are distributed among these distances:
42 14 0.24
43 30 0.52
44 14 0.24
ACGTcount: A:0.38, C:0.16, G:0.17, T:0.30
Consensus pattern (43 bp):
TTTTTTAAAAAAGTGCTGCTAAAGAACAGGACTTTTAGAAGCA
Found at i:72374466 original size:42 final size:43
Alignment explanation
Indices: 72374409--72374554 Score: 206
Period size: 42 Copynumber: 3.4 Consensus size: 43
72374399 GAACAGGACT
*
72374409 TTTAGCAGCATTTTTTAAAAAAGCGCCGCTAAAAGTCCTGGTC
1 TTTAGCGGCATTTTTTAAAAAAGCGCCGCTAAAAGTCCTGGTC
** *
72374452 ACTAGCGGCATTTTTT-AAAAAGCACCGCTAAAAGTCCTGGTC
1 TTTAGCGGCATTTTTTAAAAAAGCGCCGCTAAAAGTCCTGGTC
*
72374494 TTTAGCGGCATTTTTTTCAACAAAA-CGCCGCTATAAGTCCTGGTC
1 TTTAGCGGCA-TTTTTT-AA-AAAAGCGCCGCTAAAAGTCCTGGTC
72374539 TTTAGCGGCATTTTTT
1 TTTAGCGGCATTTTTT
72374555 TCAACAAAAC
Statistics
Matches: 91, Mismatches: 8, Indels: 7
0.86 0.08 0.07
Matches are distributed among these distances:
42 33 0.36
43 19 0.21
44 6 0.07
45 29 0.32
46 4 0.04
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (43 bp):
TTTAGCGGCATTTTTTAAAAAAGCGCCGCTAAAAGTCCTGGTC
Found at i:72374535 original size:45 final size:42
Alignment explanation
Indices: 72374409--72374572 Score: 202
Period size: 45 Copynumber: 3.7 Consensus size: 42
72374399 GAACAGGACT
*
72374409 TTTAGCAGCATTTTTTAAAAAAGCGCCGCTAAAAGTCCTGGTC
1 TTTAGCGGCATTTTTTAAAAAA-CGCCGCTAAAAGTCCTGGTC
** * *
72374452 ACTAGCGGCATTTTTTAAAAAGCACCGCTAAAAGTCCTGGTC
1 TTTAGCGGCATTTTTTAAAAAACGCCGCTAAAAGTCCTGGTC
*
72374494 TTTAGCGGCATTTTTTTCAACAAAACGCCGCTATAAGTCCTGGTC
1 TTTAGCGGCA-TTTTTT-AA-AAAACGCCGCTAAAAGTCCTGGTC
*
72374539 TTTAGCGGCATTTTTTTCAACAAAACGCTGCTAA
1 TTTAGCGGCA-TTTTTT-AA-AAAACGCCGCTAA
72374573 TTTTAGCGGC
Statistics
Matches: 106, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
42 27 0.25
43 24 0.23
44 2 0.02
45 53 0.50
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.31
Consensus pattern (42 bp):
TTTAGCGGCATTTTTTAAAAAACGCCGCTAAAAGTCCTGGTC
Found at i:72384358 original size:44 final size:44
Alignment explanation
Indices: 72384295--72384382 Score: 176
Period size: 44 Copynumber: 2.0 Consensus size: 44
72384285 TGCAAGCCCA
72384295 TTTTTGTACTCAAGATTGGTTATGCAATTGAACAATTGGACCCG
1 TTTTTGTACTCAAGATTGGTTATGCAATTGAACAATTGGACCCG
72384339 TTTTTGTACTCAAGATTGGTTATGCAATTGAACAATTGGACCCG
1 TTTTTGTACTCAAGATTGGTTATGCAATTGAACAATTGGACCCG
72384383 AATACTCTCC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.36
Consensus pattern (44 bp):
TTTTTGTACTCAAGATTGGTTATGCAATTGAACAATTGGACCCG
Found at i:72388208 original size:29 final size:30
Alignment explanation
Indices: 72388151--72388209 Score: 77
Period size: 29 Copynumber: 2.0 Consensus size: 30
72388141 TATTTTATTA
*
72388151 TTAATTTTCTTATTATTTTAAAGGTATTTG
1 TTAATTTTCTTATTATTTTAAAGGCATTTG
*
72388181 TTAATTTT-TTTTTATTTTAGAA-GCATTTG
1 TTAATTTTCTTATTATTTTA-AAGGCATTTG
72388210 CTTGTTAAGT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
29 16 0.62
30 10 0.38
ACGTcount: A:0.25, C:0.03, G:0.10, T:0.61
Consensus pattern (30 bp):
TTAATTTTCTTATTATTTTAAAGGCATTTG
Found at i:72389771 original size:25 final size:25
Alignment explanation
Indices: 72389725--72389772 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
72389715 AATTCTCTAA
* *
72389725 AAAGCCTTTGTGGCAAATTCTTTGG
1 AAAGCCTATGTGGCAAACTCTTTGG
* *
72389750 AAAGCCTATGTGGCTACCTCTTT
1 AAAGCCTATGTGGCAAACTCTTT
72389773 CTAGAAGCCT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.23, C:0.21, G:0.21, T:0.35
Consensus pattern (25 bp):
AAAGCCTATGTGGCAAACTCTTTGG
Found at i:72392590 original size:20 final size:20
Alignment explanation
Indices: 72392549--72392590 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
72392539 GACATATTTT
* *
72392549 ATACTTCTTCACTTACTTAA
1 ATACTTCTTCACTTAATCAA
72392569 ATACTTACTT-ACTTAATCAA
1 ATACTT-CTTCACTTAATCAA
72392589 AT
1 AT
72392591 TTATTAATAC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 16 0.84
21 3 0.16
ACGTcount: A:0.36, C:0.21, G:0.00, T:0.43
Consensus pattern (20 bp):
ATACTTCTTCACTTAATCAA
Found at i:72392964 original size:55 final size:53
Alignment explanation
Indices: 72392779--72393030 Score: 214
Period size: 55 Copynumber: 4.8 Consensus size: 53
72392769 CGGGTACCTT
* * * * *
72392779 ACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCC-T---TT-TGAAACTT
1 ACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AACTC
* *
72392828 ACCATTGCCATGTGTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTC
1 ACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTC
* * *
72392881 ACCAATGCCATGCCTTGGCATGGTCTTACATAGG-A-CCTTTGCCTTATAGTAACTT
1 ACCAATGCCATGTCTTGACATGGTCTTACAT-GGTATCC-TTGCCTTAT-G-AACTC
** * * *
72392936 ATTAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-GAAACCTT
1 ACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTC
* * *
72392990 ACCAATTGCCATGCCTTGGCATGGTCTTACATGATATCCTT
1 ACCAA-TGCCATGTCTTGACATGGTCTTACATGGTATCCTT
72393031 AAACCCTAAT
Statistics
Matches: 168, Mismatches: 22, Indels: 20
0.80 0.10 0.10
Matches are distributed among these distances:
49 34 0.20
50 1 0.01
52 2 0.01
53 46 0.27
54 12 0.07
55 71 0.42
56 2 0.01
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.36
Consensus pattern (53 bp):
ACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTC
Found at i:72394327 original size:38 final size:38
Alignment explanation
Indices: 72394276--72394352 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
72394266 TAAGACTGAG
72394276 AATGATTATATGTCGTATCATGTGCTTATAGTACTTGT
1 AATGATTATATGTCGTATCATGTGCTTATAGTACTTGT
72394314 AATGATTATATGTCGTATCATGTGCTTATAGTACTTGT
1 AATGATTATATGTCGTATCATGTGCTTATAGTACTTGT
72394352 A
1 A
72394353 CTTTCATGTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.27, C:0.10, G:0.18, T:0.44
Consensus pattern (38 bp):
AATGATTATATGTCGTATCATGTGCTTATAGTACTTGT
Found at i:72394593 original size:20 final size:20
Alignment explanation
Indices: 72394568--72394652 Score: 70
Period size: 20 Copynumber: 4.4 Consensus size: 20
72394558 TATTTTTATT
72394568 ATTTTTATGAATTCTAATAA
1 ATTTTTATGAATTCTAATAA
* *
72394588 ATTTTTATAAATT-TATATCA
1 ATTTTTATGAATTCTA-ATAA
* * *
72394608 ATTTTAAT-ATTTTTAAT--
1 ATTTTTATGAATTCTAATAA
* *
72394625 ATATTTATGAATTCTAATAT
1 ATTTTTATGAATTCTAATAA
72394645 ATTTTTAT
1 ATTTTTAT
72394653 AAGTTTTTAT
Statistics
Matches: 51, Mismatches: 9, Indels: 10
0.73 0.13 0.14
Matches are distributed among these distances:
17 6 0.12
18 7 0.14
19 7 0.14
20 31 0.61
ACGTcount: A:0.38, C:0.04, G:0.02, T:0.56
Consensus pattern (20 bp):
ATTTTTATGAATTCTAATAA
Found at i:72394601 original size:10 final size:10
Alignment explanation
Indices: 72394525--72394662 Score: 58
Period size: 10 Copynumber: 14.5 Consensus size: 10
72394515 GATTTTTTTA
72394525 TTTAT-AATT
1 TTTATAAATT
*
72394534 TTTATAAGTT
1 TTTATAAATT
*
72394544 TATATCAAA--
1 TTTAT-AAATT
*
72394553 TTTA-ATATT
1 TTTATAAATT
*
72394562 TTTAT-TATT
1 TTTATAAATT
*
72394571 TTTATGAATT
1 TTTATAAATT
* *
72394581 CTAATAAATT
1 TTTATAAATT
72394591 TTTATAAATT
1 TTTATAAATT
* *
72394601 TATATCAA-T
1 TTTATAAATT
*
72394610 TTTA-ATATT
1 TTTATAAATT
* *
72394619 TTTA-ATATA
1 TTTATAAATT
*
72394628 TTTATGAATT
1 TTTATAAATT
* * *
72394638 CTAATATATT
1 TTTATAAATT
*
72394648 TTTATAAGTT
1 TTTATAAATT
72394658 TTTAT
1 TTTAT
72394663 TATTTTAACA
Statistics
Matches: 93, Mismatches: 28, Indels: 15
0.68 0.21 0.11
Matches are distributed among these distances:
7 2 0.02
8 1 0.01
9 38 0.41
10 50 0.54
11 2 0.02
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.58
Consensus pattern (10 bp):
TTTATAAATT
Found at i:72394603 original size:57 final size:57
Alignment explanation
Indices: 72394530--72394654 Score: 205
Period size: 57 Copynumber: 2.2 Consensus size: 57
72394520 TTTTATTTAT
* * *
72394530 AATTTTTATAAGTTTATATCAAATTTAATATTTTTATTATTTTTATGAATTCTAATA
1 AATTTTTATAAATTTATATCAAATTTAATATTTTTAATATATTTATGAATTCTAATA
*
72394587 AATTTTTATAAATTTATATCAATTTTAATATTTTTAATATATTTATGAATTCTAATA
1 AATTTTTATAAATTTATATCAAATTTAATATTTTTAATATATTTATGAATTCTAATA
*
72394644 TATTTTTATAA
1 AATTTTTATAA
72394655 GTTTTTATTA
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
57 63 1.00
ACGTcount: A:0.38, C:0.03, G:0.02, T:0.56
Consensus pattern (57 bp):
AATTTTTATAAATTTATATCAAATTTAATATTTTTAATATATTTATGAATTCTAATA
Found at i:72394632 original size:37 final size:35
Alignment explanation
Indices: 72394590--72394704 Score: 90
Period size: 37 Copynumber: 3.1 Consensus size: 35
72394580 TCTAATAAAT
72394590 TTTTATAAATTTATATCAATTTTAATATTTTTAATA
1 TTTTATAAATTTA-ATCAATTTTAATATTTTTAATA
* * *
72394626 TATTTATGAATTCTAAT-ATATTTTTATAAGTTTTTATTA
1 T-TTTATAAATT-TAATCA-ATTTTAAT-A-TTTTTAATA
* *
72394665 TTTTA-ACAAGATTACATCAATTTTAATATTTTCAATA
1 TTTTATA-AA-TTTA-ATCAATTTTAATATTTTTAATA
72394702 TTT
1 TTT
72394705 AATATTTTTT
Statistics
Matches: 62, Mismatches: 8, Indels: 17
0.71 0.09 0.20
Matches are distributed among these distances:
36 2 0.03
37 28 0.45
38 12 0.19
39 19 0.31
40 1 0.02
ACGTcount: A:0.37, C:0.05, G:0.03, T:0.56
Consensus pattern (35 bp):
TTTTATAAATTTAATCAATTTTAATATTTTTAATA
Found at i:72394646 original size:29 final size:29
Alignment explanation
Indices: 72394557--72394651 Score: 97
Period size: 29 Copynumber: 3.3 Consensus size: 29
72394547 ATCAAATTTA
* *
72394557 ATATTTTTATTATTTTTATGAATTCTAAT
1 ATATTTTTAATATATTTATGAATTCTAAT
* * * *
72394586 AAATTTTT-ATAAATTTATATCAATT-TTA-
1 ATATTTTTAATATA-TT-TATGAATTCTAAT
72394614 ATATTTTTAATATATTTATGAATTCTAAT
1 ATATTTTTAATATATTTATGAATTCTAAT
72394643 ATATTTTTA
1 ATATTTTTA
72394652 TAAGTTTTTA
Statistics
Matches: 51, Mismatches: 10, Indels: 10
0.72 0.14 0.14
Matches are distributed among these distances:
27 7 0.14
28 13 0.25
29 24 0.47
30 7 0.14
ACGTcount: A:0.37, C:0.03, G:0.02, T:0.58
Consensus pattern (29 bp):
ATATTTTTAATATATTTATGAATTCTAAT
Found at i:72394707 original size:16 final size:15
Alignment explanation
Indices: 72394681--72394712 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
72394671 CAAGATTACA
72394681 TCAATTTTAATATTT
1 TCAATTTTAATATTT
72394696 TCAATATTTAATATTT
1 TCAAT-TTTAATATTT
72394712 T
1 T
72394713 TTTATAATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.34, C:0.06, G:0.00, T:0.59
Consensus pattern (15 bp):
TCAATTTTAATATTT
Found at i:72404831 original size:2 final size:2
Alignment explanation
Indices: 72404826--72404874 Score: 89
Period size: 2 Copynumber: 24.5 Consensus size: 2
72404816 TCTCTCTCTC
*
72404826 TA TA TA TA TA TA TA TA TA TA TA TT TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
72404868 TA TA TA T
1 TA TA TA T
72404875 GTTTTTGCAT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:72415116 original size:42 final size:42
Alignment explanation
Indices: 72415062--72415141 Score: 108
Period size: 42 Copynumber: 1.9 Consensus size: 42
72415052 TACATGTAAT
** *
72415062 TCAGTATCGATGCCTCTGTCCCAGACATGGTTTTATACAAAA
1 TCAGTATCGATGCCGATGTCCCAGACATGATTTTATACAAAA
*
72415104 TCAGTTAT-GATGCCGATGTCCCTGACATGATTTTATAC
1 TCAG-TATCGATGCCGATGTCCCAGACATGATTTTATAC
72415142 GTAAATCTTA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
42 30 0.91
43 3 0.09
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.34
Consensus pattern (42 bp):
TCAGTATCGATGCCGATGTCCCAGACATGATTTTATACAAAA
Found at i:72418893 original size:2 final size:2
Alignment explanation
Indices: 72418886--72418917 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
72418876 GTTTGAATCA
72418886 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
72418918 GATTAATTTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:72421488 original size:9 final size:9
Alignment explanation
Indices: 72421468--72421526 Score: 77
Period size: 10 Copynumber: 6.4 Consensus size: 9
72421458 GTTAAATAGG
72421468 ATTTTATAAA
1 ATTTT-TAAA
72421478 ATTTTTAAA
1 ATTTTTAAA
72421487 A-TTTTAAA
1 ATTTTTAAA
72421495 TATTTTTAAA
1 -ATTTTTAAA
72421505 ATTTTT-AA
1 ATTTTTAAA
72421513 ATTTTTAATA
1 ATTTTTAA-A
72421523 ATTT
1 ATTT
72421527 ATTGCTCATA
Statistics
Matches: 45, Mismatches: 0, Indels: 8
0.85 0.00 0.15
Matches are distributed among these distances:
8 15 0.33
9 13 0.29
10 17 0.38
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (9 bp):
ATTTTTAAA
Found at i:72421501 original size:18 final size:17
Alignment explanation
Indices: 72421474--72421526 Score: 79
Period size: 18 Copynumber: 3.0 Consensus size: 17
72421464 TAGGATTTTA
72421474 TAAAATTTTTAAAATTT
1 TAAAATTTTTAAAATTT
72421491 TAAATATTTTTAAAATTT
1 TAAA-ATTTTTAAAATTT
*
72421509 TTAAATTTTTAATAATTT
1 TAAAATTTTTAA-AATTT
72421527 ATTGCTCATA
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
17 12 0.36
18 21 0.64
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (17 bp):
TAAAATTTTTAAAATTT
Found at i:72421505 original size:27 final size:28
Alignment explanation
Indices: 72421468--72421528 Score: 90
Period size: 26 Copynumber: 2.2 Consensus size: 28
72421458 GTTAAATAGG
72421468 ATTTTATAAAATTTTTAAAATTTTAAAT
1 ATTTTATAAAATTTTTAAAATTTTAAAT
*
72421496 ATTTT-TAAAATTTTT-AAATTTTTAAT
1 ATTTTATAAAATTTTTAAAATTTTAAAT
*
72421522 AATTTAT
1 ATTTTAT
72421529 TGCTCATAAC
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
26 14 0.47
27 11 0.37
28 5 0.17
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (28 bp):
ATTTTATAAAATTTTTAAAATTTTAAAT
Found at i:72421518 original size:8 final size:8
Alignment explanation
Indices: 72421476--72421520 Score: 54
Period size: 9 Copynumber: 5.2 Consensus size: 8
72421466 GGATTTTATA
72421476 AAATTTTT
1 AAATTTTT
*
72421484 AAAATTTTA
1 -AAATTTTT
72421493 AATATTTTT
1 AA-ATTTTT
72421502 AAAATTTTT
1 -AAATTTTT
72421511 AAATTTTT
1 AAATTTTT
72421519 AA
1 AA
72421521 TAATTTATTG
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
8 12 0.38
9 18 0.56
10 2 0.06
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (8 bp):
AAATTTTT
Found at i:72426479 original size:20 final size:21
Alignment explanation
Indices: 72426456--72426509 Score: 58
Period size: 20 Copynumber: 2.7 Consensus size: 21
72426446 CTTTAAATTT
72426456 TTTTTAGTTATTTTATT-TTA
1 TTTTTAGTTATTTTATTATTA
* *
72426476 TTTTTA-TTCTTTTTTTATTA
1 TTTTTAGTTATTTTATTATTA
* *
72426496 ATTTTAGTTGTTTT
1 TTTTTAGTTATTTT
72426510 TAGTTTTTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
19 8 0.29
20 14 0.50
21 6 0.21
ACGTcount: A:0.17, C:0.02, G:0.06, T:0.76
Consensus pattern (21 bp):
TTTTTAGTTATTTTATTATTA
Found at i:72426520 original size:10 final size:10
Alignment explanation
Indices: 72426453--72426520 Score: 50
Period size: 10 Copynumber: 6.8 Consensus size: 10
72426443 CTACTTTAAA
72426453 TTTTTTTTAG
1 TTTTTTTTAG
* *
72426463 -TTATTTTAT
1 TTTTTTTTAG
*
72426472 TTTATTTTTAT
1 TTT-TTTTTAG
72426483 TCTTTTTTTA-
1 T-TTTTTTTAG
**
72426493 TTAATTTTAG
1 TTTTTTTTAG
*
72426503 TTGTTTTTAG
1 TTTTTTTTAG
72426513 TTTTTTTT
1 TTTTTTTT
72426521 TCCAAATCAA
Statistics
Matches: 46, Mismatches: 8, Indels: 8
0.74 0.13 0.13
Matches are distributed among these distances:
9 13 0.28
10 18 0.39
11 13 0.28
12 2 0.04
ACGTcount: A:0.15, C:0.01, G:0.06, T:0.78
Consensus pattern (10 bp):
TTTTTTTTAG
Found at i:72426520 original size:31 final size:31
Alignment explanation
Indices: 72426453--72426521 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 31
72426443 CTACTTTAAA
*
72426453 TTTTTTTTAGTTATTTTATTTTATTTTTATT
1 TTTTTTTTAGTTATTTTATGTTATTTTTATT
* * *
72426484 CTTTTTTTA-TTAATTTTA-GTTGTTTTTAGT
1 TTTTTTTTAGTT-ATTTTATGTTATTTTTATT
72426514 TTTTTTTT
1 TTTTTTTT
72426522 CCAAATCAAG
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
30 18 0.56
31 14 0.44
ACGTcount: A:0.14, C:0.01, G:0.06, T:0.78
Consensus pattern (31 bp):
TTTTTTTTAGTTATTTTATGTTATTTTTATT
Found at i:72440384 original size:27 final size:27
Alignment explanation
Indices: 72440346--72440400 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
72440336 GACACTGTCT
72440346 TAATGCCTATCTTCAGTTGCAACATTC
1 TAATGCCTATCTTCAGTTGCAACATTC
72440373 TAATGCCTATCTTCAGTTGCAACATTC
1 TAATGCCTATCTTCAGTTGCAACATTC
72440400 T
1 T
72440401 CACATCGATG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.25, C:0.25, G:0.11, T:0.38
Consensus pattern (27 bp):
TAATGCCTATCTTCAGTTGCAACATTC
Found at i:72444077 original size:28 final size:28
Alignment explanation
Indices: 72444045--72444117 Score: 92
Period size: 32 Copynumber: 2.5 Consensus size: 28
72444035 ATATTTAATG
*
72444045 TAATTATATATGCTTTAATTAATGATAA
1 TAATTATACATGCTTTAATTAATGATAA
*
72444073 TAATTACACATGCGTCCTTTAATTAATGATAA
1 TAATTATACAT--G--CTTTAATTAATGATAA
72444105 TAATTATACATGC
1 TAATTATACATGC
72444118 GTCCTTACTT
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
28 10 0.26
30 2 0.05
32 26 0.68
ACGTcount: A:0.40, C:0.11, G:0.08, T:0.41
Consensus pattern (28 bp):
TAATTATACATGCTTTAATTAATGATAA
Found at i:72444098 original size:32 final size:32
Alignment explanation
Indices: 72444057--72444123 Score: 125
Period size: 32 Copynumber: 2.1 Consensus size: 32
72444047 ATTATATATG
72444057 CTTTAATTAATGATAATAATTACACATGCGTC
1 CTTTAATTAATGATAATAATTACACATGCGTC
*
72444089 CTTTAATTAATGATAATAATTATACATGCGTC
1 CTTTAATTAATGATAATAATTACACATGCGTC
72444121 CTT
1 CTT
72444124 ACTTCCTGTC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.36, C:0.15, G:0.09, T:0.40
Consensus pattern (32 bp):
CTTTAATTAATGATAATAATTACACATGCGTC
Found at i:72450288 original size:21 final size:21
Alignment explanation
Indices: 72450249--72450290 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
72450239 ATCTGCTCAA
* * *
72450249 ACTCCACCTGTTTTGGAGTAT
1 ACTCCACCTGCTGTAGAGTAT
72450270 ACTCCACCTGCTGTAGAGTAT
1 ACTCCACCTGCTGTAGAGTAT
72450291 CGCTTGTCTG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.21, C:0.26, G:0.19, T:0.33
Consensus pattern (21 bp):
ACTCCACCTGCTGTAGAGTAT
Found at i:72453901 original size:12 final size:12
Alignment explanation
Indices: 72453886--72453910 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
72453876 ATAATGTATA
72453886 AAATAAAAAATT
1 AAATAAAAAATT
72453898 AAATAAAAAATT
1 AAATAAAAAATT
72453910 A
1 A
72453911 TAAATAATAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (12 bp):
AAATAAAAAATT
Found at i:72458667 original size:30 final size:31
Alignment explanation
Indices: 72458633--72458697 Score: 89
Period size: 31 Copynumber: 2.1 Consensus size: 31
72458623 AATAAAATAA
72458633 TAAAATAATAAAT-AATAATAAATATCTT-AT
1 TAAAATAATAAATAAATAATAAATAT-TTAAT
* *
72458663 TAAAATATTAAATAAATAATAATTATTTAAT
1 TAAAATAATAAATAAATAATAAATATTTAAT
72458694 TAAA
1 TAAA
72458698 TAACTATAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
30 14 0.45
31 17 0.55
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (31 bp):
TAAAATAATAAATAAATAATAAATATTTAAT
Found at i:72458699 original size:30 final size:30
Alignment explanation
Indices: 72458630--72458700 Score: 83
Period size: 30 Copynumber: 2.4 Consensus size: 30
72458620 CTAAATAAAA
*
72458630 TAATAAAATAATAAATAATAATAAATATCT
1 TAATTAAATAATAAATAATAATAAATATCT
* *
72458660 T-ATTAAAATATTAAATAAATAATAATTAT-T
1 TAATT-AAATAATAAAT-AATAATAAATATCT
72458690 TAATTAAATAA
1 TAATTAAATAA
72458701 CTATAAAATA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
29 2 0.06
30 18 0.53
31 14 0.41
ACGTcount: A:0.61, C:0.01, G:0.00, T:0.38
Consensus pattern (30 bp):
TAATTAAATAATAAATAATAATAAATATCT
Found at i:72458961 original size:30 final size:30
Alignment explanation
Indices: 72458910--72458978 Score: 86
Period size: 30 Copynumber: 2.3 Consensus size: 30
72458900 CACCCTTAAA
* * *
72458910 ATATTTTCACTATTAGTCCTTCAACTTTTT
1 ATATTTACACTATTAATCCTTCAAATTTTT
72458940 CATATTTACACT-TTAATCCTTCAAATTTTT
1 -ATATTTACACTATTAATCCTTCAAATTTTT
72458970 AGTATTTAC
1 A-TATTTAC
72458979 TCTTGAGCCA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
29 1 0.03
30 23 0.68
31 10 0.29
ACGTcount: A:0.28, C:0.19, G:0.03, T:0.51
Consensus pattern (30 bp):
ATATTTACACTATTAATCCTTCAAATTTTT
Found at i:72460255 original size:16 final size:17
Alignment explanation
Indices: 72460234--72460289 Score: 53
Period size: 18 Copynumber: 3.1 Consensus size: 17
72460224 AAATCCTTAC
72460234 GCTAATAAAAATCTATA
1 GCTAATAAAAATCTATA
72460251 G-TAATTAAATAAATCCT-TA
1 GCTAA-T-AA-AAAT-CTATA
72460270 CGCTAATAAAAATCTATA
1 -GCTAATAAAAATCTATA
72460288 GC
1 GC
72460290 GATTAACTTG
Statistics
Matches: 32, Mismatches: 0, Indels: 14
0.70 0.00 0.30
Matches are distributed among these distances:
16 3 0.09
17 6 0.19
18 8 0.25
19 8 0.25
20 4 0.12
21 3 0.09
ACGTcount: A:0.48, C:0.14, G:0.07, T:0.30
Consensus pattern (17 bp):
GCTAATAAAAATCTATA
Found at i:72460276 original size:21 final size:21
Alignment explanation
Indices: 72460219--72460276 Score: 65
Period size: 18 Copynumber: 3.0 Consensus size: 21
72460209 ATTTAATTAC
72460219 TAAATAAATCCTTACGCTAA-
1 TAAATAAATCCTTACGCTAAT
72460239 T-AA-AAAT-CTATA-G-TAAT
1 TAAATAAATCCT-TACGCTAAT
72460256 TAAATAAATCCTTACGCTAAT
1 TAAATAAATCCTTACGCTAAT
72460277 AAAAATCTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 13
0.70 0.00 0.30
Matches are distributed among these distances:
16 3 0.10
17 4 0.13
18 8 0.26
19 8 0.26
20 4 0.13
21 4 0.13
ACGTcount: A:0.47, C:0.16, G:0.05, T:0.33
Consensus pattern (21 bp):
TAAATAAATCCTTACGCTAAT
Found at i:72460295 original size:37 final size:37
Alignment explanation
Indices: 72460219--72460295 Score: 136
Period size: 37 Copynumber: 2.1 Consensus size: 37
72460209 ATTTAATTAC
*
72460219 TAAATAAATCCTTACGCTAATAAAAATCTATAGTAAT
1 TAAATAAATCCTTACGCTAATAAAAATCTATAGCAAT
*
72460256 TAAATAAATCCTTACGCTAATAAAAATCTATAGCGAT
1 TAAATAAATCCTTACGCTAATAAAAATCTATAGCAAT
72460293 TAA
1 TAA
72460296 CTTGTAACAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.48, C:0.14, G:0.06, T:0.31
Consensus pattern (37 bp):
TAAATAAATCCTTACGCTAATAAAAATCTATAGCAAT
Found at i:72462961 original size:20 final size:20
Alignment explanation
Indices: 72462936--72462985 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
72462926 TTAAAGGGGT
* *
72462936 AATTAAATTAATTTGATTAA
1 AATTAAATAAAGTTGATTAA
*
72462956 AATTAAATAAAGTTGATTAG
1 AATTAAATAAAGTTGATTAA
*
72462976 AATAAAATAA
1 AATTAAATAA
72462986 GATCAGGATA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.56, C:0.00, G:0.08, T:0.36
Consensus pattern (20 bp):
AATTAAATAAAGTTGATTAA
Found at i:72465033 original size:10 final size:9
Alignment explanation
Indices: 72465014--72465053 Score: 62
Period size: 9 Copynumber: 4.2 Consensus size: 9
72465004 ACAGAGATAT
72465014 ATAAAAAAA
1 ATAAAAAAA
72465023 ATAAAAGAAA
1 ATAAAA-AAA
72465033 ATATAAAAAA
1 ATA-AAAAAA
72465043 ATAAAAAAA
1 ATAAAAAAA
72465052 AT
1 AT
72465054 TCCTTTTTGA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
9 14 0.48
10 12 0.41
11 3 0.10
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.15
Consensus pattern (9 bp):
ATAAAAAAA
Found at i:72465038 original size:21 final size:19
Alignment explanation
Indices: 72465012--72465053 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 19
72465002 ATACAGAGAT
72465012 ATATAAAAAAAATAAAAGAAA
1 ATAT-AAAAAAATAAAA-AAA
72465033 ATATAAAAAAATAAAAAAA
1 ATATAAAAAAATAAAAAAA
72465052 AT
1 AT
72465054 TCCTTTTTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 5 0.24
20 12 0.57
21 4 0.19
ACGTcount: A:0.81, C:0.00, G:0.02, T:0.17
Consensus pattern (19 bp):
ATATAAAAAAATAAAAAAA
Found at i:72465658 original size:3 final size:3
Alignment explanation
Indices: 72465650--72465783 Score: 98
Period size: 3 Copynumber: 44.3 Consensus size: 3
72465640 ATCATTTACT
* * *
72465650 TTA TTA TTA TTA TTA TTA TTA TTA TTA TCA TCA TTA -TA CTT- GTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA
* * * * * *
72465694 CTTA -TA TTTA TT- TTA TTC TAA TGCCA TTT TTA TTA CTA TT- TCCA
1 -TTA TTA -TTA TTA TTA TTA TTA T--TA TTA TTA TTA TTA TTA T-TA
72465738 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
72465784 ATATACATAT
Statistics
Matches: 105, Mismatches: 15, Indels: 22
0.74 0.11 0.15
Matches are distributed among these distances:
2 8 0.08
3 89 0.85
4 6 0.06
5 2 0.02
ACGTcount: A:0.30, C:0.07, G:0.01, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:72465849 original size:12 final size:12
Alignment explanation
Indices: 72465834--72465862 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
72465824 ATATTATTTA
72465834 TATTATTACTAT
1 TATTATTACTAT
72465846 TATTATTACTAT
1 TATTATTACTAT
72465858 TATTA
1 TATTA
72465863 CTATTTCTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.34, C:0.07, G:0.00, T:0.59
Consensus pattern (12 bp):
TATTATTACTAT
Found at i:72465851 original size:21 final size:21
Alignment explanation
Indices: 72465825--72465867 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 21
72465815 TTCATACATA
72465825 TATTATTTA-TATTATTACTAT
1 TATTA-TTACTATTATTACTAT
72465846 TATTATTACTATTATTACTAT
1 TATTATTACTATTATTACTAT
72465867 T
1 T
72465868 TCTTTTATGT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 3 0.14
21 18 0.86
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60
Consensus pattern (21 bp):
TATTATTACTATTATTACTAT
Found at i:72465994 original size:17 final size:17
Alignment explanation
Indices: 72465961--72465994 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
72465951 TTTATTTTTA
*
72465961 TTTTTATTACTATTACT
1 TTTTTATTACTACTACT
*
72465978 TTTTTATTATTACTACT
1 TTTTTATTACTACTACT
72465995 ACTGTTATTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.12, G:0.00, T:0.65
Consensus pattern (17 bp):
TTTTTATTACTACTACT
Found at i:72466036 original size:28 final size:26
Alignment explanation
Indices: 72466000--72466063 Score: 67
Period size: 25 Copynumber: 2.4 Consensus size: 26
72465990 CTACTACTGT
*
72466000 TATTTTTATTAACATATTATTTTTATCA
1 TATTATTATTAACATATT-TTTTTAT-A
* * *
72466028 TATTATTATT-TCCTATTTTTTTGTA
1 TATTATTATTAACATATTTTTTTATA
72466053 TATTATTATTA
1 TATTATTATTA
72466064 TTAATGTACT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
25 11 0.35
26 6 0.19
27 5 0.16
28 9 0.29
ACGTcount: A:0.28, C:0.06, G:0.02, T:0.64
Consensus pattern (26 bp):
TATTATTATTAACATATTTTTTTATA
Found at i:72466103 original size:15 final size:15
Alignment explanation
Indices: 72466083--72466113 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
72466073 TATTATTTTC
*
72466083 TATTTATTTCTATTA
1 TATTTATTACTATTA
72466098 TATTTATTACTATTA
1 TATTTATTACTATTA
72466113 T
1 T
72466114 TAATACTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.65
Consensus pattern (15 bp):
TATTTATTACTATTA
Found at i:72466201 original size:3 final size:3
Alignment explanation
Indices: 72466195--72466232 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
72466185 CCTACTTAGC
72466195 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
72466233 CATTATACTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:72466429 original size:3 final size:3
Alignment explanation
Indices: 72466423--72466622 Score: 69
Period size: 3 Copynumber: 67.3 Consensus size: 3
72466413 ATCTCGTTTC
* * * * * *
72466423 ATT ATT ATC ATT CTT ATT AAT A-C ATT ATT ACT ATT ATT TTT ATT -TT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * *
72466469 ATT TTT ATT ACT ATT ACTT -TT -TT ATT ATT ACT ACT ACT ATT ATT
1 ATT ATT ATT ATT ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* ** *
72466513 TTT ATT AAC A-T ATT ATT -TT -TT ATC A-T ATT ATT ATT -TCCT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT--T ATT
* * * *
72466555 -TT TTT ATAT ATT ATT ATT AATGT ACT ATT ATT TTCT ATTT ATT ACT
1 ATT ATT AT-T ATT ATT ATT -AT-T ATT ATT ATT AT-T A-TT ATT ATT
* *
72466601 ATT ATT TTT ATT ACT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT A
72466623 ATACTTTTTT
Statistics
Matches: 146, Mismatches: 35, Indels: 32
0.69 0.16 0.15
Matches are distributed among these distances:
2 16 0.11
3 115 0.79
4 12 0.08
5 3 0.02
ACGTcount: A:0.29, C:0.09, G:0.01, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:72466465 original size:26 final size:26
Alignment explanation
Indices: 72466436--72466529 Score: 77
Period size: 26 Copynumber: 3.6 Consensus size: 26
72466426 ATTATCATTC
72466436 TTATTAATACATTATTACTATTATTT
1 TTATTAATACATTATTACTATTATTT
* **
72466462 TTATT-TTATTTTTATTACTATTACTTTT
1 TTATTAATA-CATTATTACTATTA--TTT
* *
72466490 TTATTATTAC--TACTACTATTATTT
1 TTATTAATACATTATTACTATTATTT
* *
72466514 TTATTAACATATTATT
1 TTATTAATACATTATT
72466530 TTTTATCATA
Statistics
Matches: 53, Mismatches: 9, Indels: 12
0.72 0.12 0.16
Matches are distributed among these distances:
24 10 0.19
25 2 0.04
26 30 0.57
28 8 0.15
29 3 0.06
ACGTcount: A:0.30, C:0.09, G:0.00, T:0.62
Consensus pattern (26 bp):
TTATTAATACATTATTACTATTATTT
Found at i:72466612 original size:15 final size:15
Alignment explanation
Indices: 72466447--72466621 Score: 90
Period size: 15 Copynumber: 11.9 Consensus size: 15
72466437 TATTAATACA
72466447 TTATTACTATTATTT
1 TTATTACTATTATTT
72466462 TTA-T--T-TTATTT
1 TTATTACTATTATTT
*
72466473 TTATTACTATTA-CT
1 TTATTACTATTATTT
*
72466487 TT-TT--TATTATTA
1 TTATTACTATTATTT
* *
72466499 CTACTACTATTATTT
1 TTATTACTATTATTT
72466514 TTATTAACATATTATTTT
1 TTATT-AC-TATTA-TTT
*
72466532 TTATCA-TATTA-TT
1 TTATTACTATTATTT
* *
72466545 AT-TTCCTATT-TTT
1 TTATTACTATTATTT
72466558 TTA-TA-TATTATTAT
1 TTATTACTATTATT-T
*
72466572 TAATGTACTATTATTTTCTAT
1 TTAT-TACTATTA---T-T-T
72466593 TTATTACTATTATTT
1 TTATTACTATTATTT
72466608 TTATTACTATTATT
1 TTATTACTATTATT
72466622 AATACTTTTT
Statistics
Matches: 121, Mismatches: 16, Indels: 46
0.66 0.09 0.25
Matches are distributed among these distances:
11 14 0.12
12 8 0.07
13 16 0.13
14 8 0.07
15 36 0.30
16 5 0.04
17 12 0.10
18 7 0.06
20 9 0.07
21 6 0.05
ACGTcount: A:0.27, C:0.08, G:0.01, T:0.64
Consensus pattern (15 bp):
TTATTACTATTATTT
Found at i:72466718 original size:15 final size:15
Alignment explanation
Indices: 72466700--72466737 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
72466690 CCTACTTAGC
72466700 TATTATTACTATTAT
1 TATTATTACTATTAT
*
72466715 TATTTTTACTATTAT
1 TATTATTACTATTAT
*
72466730 AATTATTA
1 TATTATTA
72466738 TTAATCTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (15 bp):
TATTATTACTATTAT
Found at i:72470555 original size:9 final size:9
Alignment explanation
Indices: 72470541--72470565 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
72470531 CGCCTTTTTT
72470541 TTGCATTAA
1 TTGCATTAA
72470550 TTGCATTAA
1 TTGCATTAA
72470559 TTGCATT
1 TTGCATT
72470566 CATGCATCAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.28, C:0.12, G:0.12, T:0.48
Consensus pattern (9 bp):
TTGCATTAA
Done.