Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 233 of 318
Found at i:73256668 original size:176 final size:177
Alignment explanation
Indices: 73256362--73257094 Score: 838
Period size: 176 Copynumber: 4.1 Consensus size: 177
73256352 GAGACATTGG
* * ** *
73256362 TGAAGATTGAAGATCTTATCTCCATGAAGTTGTAGTAGAGCAAATCGAAAATGGTGAATCTTATC
1 TGAAGATTGAAGATCTTATCTCCCTGAAGTTGCAGCGGAGCAGATCGAAAATGGTGAATCTTATC
* *
73256427 TCCATGTATCGGCAATAGAGCAGATTTTA-CCACCAACCTCATCTCTCTGAGGTAGTAAGAGAGC
66 TCCATGTATCGGCAATGGAGCAGATTTTAGCCACCAACCTCATCTCTCTGAGGTAGCAAGAGAGC
* * *
73256491 AGGTTGAAGAATG-AGTCTTATCTTTCT-AGGGTAGTAAGAAAGTAGAC
131 AGGTTGAAG-ATGAAGTCTTATCTTCCTGA-GGTAGCAAGAAAGCAGAC
* * * *
73256538 TAAAGATTAAAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAAATGGTGAATCTTATC
1 TGAAGATTGAAGATCTTATCTCCCTGAAGTTGCAGCGGAGCAGATCGAAAATGGTGAATCTTATC
* * *
73256603 TACATGTATCGGCAATGGAGTAGATTTTA-CCACCAATCTCATCTCTCTGAGGTAGCAAGAGAGC
66 TCCATGTATCGGCAATGGAGCAGATTTTAGCCACCAACCTCATCTCTCTGAGGTAGCAAGAGAGC
* ** * *
73256667 AGGTTGAAGAATG-TGTCTTATCTTTTTGAGGTAGCAAGAAAACAGAT
131 AGGTTGAAG-ATGAAGTCTTATCTTCCTGAGGTAGCAAGAAAGCAGAC
* * * * *
73256714 TG-AGAATTGAAGATTTTGTCTCCCTGAAGTTGCAGCGGAGTAGATTTTCGCAGATGGCT-AATC
1 TGAAG-ATTGAAGATCTTATCTCCCTGAAGTTGCAGCGGAGCAGA---TCGAAAATGG-TGAATC
* * * * * * * *
73256777 TTATCTCTATGTATCGGTAATGGGGCAGATTTAAGCCATCAGCCTTATCTCTCTGAGGTAGCAAA
61 TTATCTCCATGTATCGGCAATGGAGCAGATTTTAGCCACCAACCTCATCTCTCTGAGGTAGCAAG
*
73256842 AGAGTAGGTTGAAGATGATAGTCTTATCTTCCTGAGGTAGCAAGAAAGCAGAC
126 AGAGCAGGTTGAAGATGA-AGTCTTATCTTCCTGAGGTAGCAAGAAAGCAGAC
* *** * * *
73256895 TGAAGATTGAAAATCTTATCTCCCT-AAACAGTAGCGGAGCGGATC-AAAGATGGCGAATCTTAT
1 TGAAGATTGAAGATCTTATCTCCCTGAAGTTGCAGCGGAGCAGATCGAAA-ATGGTGAATCTTAT
** * * *
73256958 CTCCATGTATCGGCAATGGAGCAGATTTTAGCCACTGACTTTATCTCTCTGAGGTAGCACGAGAG
65 CTCCATGTATCGGCAATGGAGCAGATTTTAGCCACCAACCTCATCTCTCTGAGGTAGCAAGAGAG
*
73257023 CCA-GTTGAAGATGATAGTCTTATCTTCCTGAGGTAGCAAAAAAGCAGAC
130 -CAGGTTGAAGATGA-AGTCTTATCTTCCTGAGGTAGCAAGAAAGCAGAC
*
73257072 TGAAGATTGGAGATCTTATCTCC
1 TGAAGATTGAAGATCTTATCTCC
73257095 TCATGTAATT
Statistics
Matches: 473, Mismatches: 71, Indels: 25
0.83 0.12 0.04
Matches are distributed among these distances:
175 2 0.00
176 191 0.40
177 135 0.29
178 1 0.00
179 43 0.09
180 51 0.11
181 48 0.10
182 2 0.00
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (177 bp):
TGAAGATTGAAGATCTTATCTCCCTGAAGTTGCAGCGGAGCAGATCGAAAATGGTGAATCTTATC
TCCATGTATCGGCAATGGAGCAGATTTTAGCCACCAACCTCATCTCTCTGAGGTAGCAAGAGAGC
AGGTTGAAGATGAAGTCTTATCTTCCTGAGGTAGCAAGAAAGCAGAC
Found at i:73256899 original size:44 final size:46
Alignment explanation
Indices: 73256820--73256915 Score: 110
Period size: 44 Copynumber: 2.2 Consensus size: 46
73256810 AGCCATCAGC
* ** * *
73256820 CTTATC-TCTCTGAGGTAGCAAAAGAGTAGGTTGAAGA-TGATAGT
1 CTTATCTTCTCTGAGGTAGCAAAAGAGCAGACTGAAGATTGAAAAT
73256864 CTTATCTTC-CTGAGGTAGCAAGAA-AGCAGACTGAAGATTGAAAAT
1 CTTATCTTCTCTGAGGTAGCAA-AAGAGCAGACTGAAGATTGAAAAT
73256909 CTTATCT
1 CTTATCT
73256916 CCCTAAACAG
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
44 28 0.64
45 16 0.36
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.29
Consensus pattern (46 bp):
CTTATCTTCTCTGAGGTAGCAAAAGAGCAGACTGAAGATTGAAAAT
Found at i:73261906 original size:30 final size:29
Alignment explanation
Indices: 73261812--73261913 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
73261802 TATAGTGAAT
* * *
73261812 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
73261841 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
73261869 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
73261899 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
73261914 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:73264195 original size:12 final size:12
Alignment explanation
Indices: 73264178--73264216 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
73264168 ATGACACAAA
73264178 AATAATAATAAC
1 AATAATAATAAC
*
73264190 AATAATAAGAAC
1 AATAATAATAAC
* *
73264202 AACAATGATAAC
1 AATAATAATAAC
73264214 AAT
1 AAT
73264217 GTGTAGAGGC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.64, C:0.10, G:0.05, T:0.21
Consensus pattern (12 bp):
AATAATAATAAC
Found at i:73265666 original size:3 final size:3
Alignment explanation
Indices: 73265660--73265735 Score: 120
Period size: 3 Copynumber: 25.7 Consensus size: 3
73265650 TTAATCCTCC
73265660 TAT TAT TA- TAGT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
73265705 TAT TAT TAT TAT TAT TAT T-T TGT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
73265736 ATTTTAATTC
Statistics
Matches: 69, Mismatches: 1, Indels: 6
0.91 0.01 0.08
Matches are distributed among these distances:
2 4 0.06
3 63 0.91
4 2 0.03
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:73267689 original size:27 final size:27
Alignment explanation
Indices: 73267633--73267694 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 27
73267623 ATTTAACATG
* *
73267633 AATAACATATAAAACAATTTGAAATAA
1 AATAATATATAAAACAATTTCAAATAA
*
73267660 AATAATATATAAAGCAAATTTCAAAT-A
1 AATAATATATAAAAC-AATTTCAAATAA
73267687 AATAATAT
1 AATAATAT
73267695 GTTAAATAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
27 22 0.71
28 9 0.29
ACGTcount: A:0.61, C:0.06, G:0.03, T:0.29
Consensus pattern (27 bp):
AATAATATATAAAACAATTTCAAATAA
Found at i:73267706 original size:27 final size:26
Alignment explanation
Indices: 73267623--73267694 Score: 74
Period size: 27 Copynumber: 2.7 Consensus size: 26
73267613 TATGAAAAAG
* * *
73267623 ATTTAACATGAATAACATATAAAAC-A
1 ATTTAA-ATAAATAATATATAAAGCAA
73267649 ATTTGAAATAAAATAATATATAAAGCAA
1 ATTT-AAAT-AAATAATATATAAAGCAA
73267677 ATTTCAAATAAATAATAT
1 ATTT-AAATAAATAATAT
73267695 GTTAAATAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
26 6 0.15
27 24 0.62
28 9 0.23
ACGTcount: A:0.58, C:0.07, G:0.04, T:0.31
Consensus pattern (26 bp):
ATTTAAATAAATAATATATAAAGCAA
Found at i:73267880 original size:15 final size:15
Alignment explanation
Indices: 73267860--73267889 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
73267850 AATCCAAAGT
*
73267860 AAAATTTTAAGATAA
1 AAAATTTTAAAATAA
73267875 AAAATTTTAAAATAA
1 AAAATTTTAAAATAA
73267890 GTAATATATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.33
Consensus pattern (15 bp):
AAAATTTTAAAATAA
Found at i:73268363 original size:3 final size:3
Alignment explanation
Indices: 73268352--73268514 Score: 120
Period size: 3 Copynumber: 54.3 Consensus size: 3
73268342 TGATGATAGC
* * *
73268352 AAT AGT AAT AAT -AT AAT AAT AAT AA- AGT AGAG AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT
* * * * * * *
73268396 ACATT AAT AAG AAT AAT AAT AGT -GT ATT GAT AAT AAC AAT AAT AGAA
1 A-A-T AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT
* * * *
73268443 AAT AAT GAT AA- AGT AAT AAT AAT AAT AA- ACT AAGG AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT
73268487 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
73268515 CGATAAAAAT
Statistics
Matches: 125, Mismatches: 25, Indels: 20
0.74 0.15 0.12
Matches are distributed among these distances:
2 7 0.06
3 109 0.87
4 7 0.06
5 2 0.02
ACGTcount: A:0.61, C:0.02, G:0.08, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:73271825 original size:2 final size:2
Alignment explanation
Indices: 73271818--73271852 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
73271808 ATATCTATTT
*
73271818 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA CA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
73271853 GTTTTGTAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:73278528 original size:26 final size:26
Alignment explanation
Indices: 73278490--73278547 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
73278480 CATGAAATTC
73278490 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
73278516 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
73278542 TTATCA
1 TTATCA
73278548 ATTTGTATCA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.36, C:0.24, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:73288925 original size:9 final size:9
Alignment explanation
Indices: 73288911--73288943 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
73288901 GTTAAACGAA
73288911 TCGAGTTAT
1 TCGAGTTAT
*
73288920 TCGAGTTAA
1 TCGAGTTAT
73288929 TCGAGTTAT
1 TCGAGTTAT
73288938 TCGAGT
1 TCGAGT
73288944 CAACTCGAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.24, C:0.12, G:0.24, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:73288932 original size:18 final size:18
Alignment explanation
Indices: 73288909--73288943 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
73288899 AAGTTAAACG
73288909 AATCGAGTTATTCGAGTT
1 AATCGAGTTATTCGAGTT
73288927 AATCGAGTTATTCGAGT
1 AATCGAGTTATTCGAGT
73288944 CAACTCGAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.29, C:0.11, G:0.23, T:0.37
Consensus pattern (18 bp):
AATCGAGTTATTCGAGTT
Found at i:73289019 original size:9 final size:9
Alignment explanation
Indices: 73288995--73289040 Score: 74
Period size: 9 Copynumber: 5.1 Consensus size: 9
73288985 TGAGTTTTCG
*
73288995 AATTCAAAT
1 AATTCGAAT
*
73289004 AACTCGAAT
1 AATTCGAAT
73289013 AATTCGAAT
1 AATTCGAAT
73289022 AATTCGAAT
1 AATTCGAAT
73289031 AATTCGAAT
1 AATTCGAAT
73289040 A
1 A
73289041 TCAAACTATA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 34 1.00
ACGTcount: A:0.48, C:0.13, G:0.09, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:73289148 original size:30 final size:29
Alignment explanation
Indices: 73289091--73289148 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
73289081 CCTTTTTACT
* *
73289091 TTTCCCTCAAAACTTTTACTCCTTTCCAC
1 TTTCCCCCAAAACTTTTACTCCCTTCCAC
73289120 TTTCCCCCAAAACTTTTACTCTCCTTCCA
1 TTTCCCCCAAAACTTTTACTC-CCTTCCA
73289149 TCCCAACCCC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 20 0.77
30 6 0.23
ACGTcount: A:0.21, C:0.40, G:0.00, T:0.40
Consensus pattern (29 bp):
TTTCCCCCAAAACTTTTACTCCCTTCCAC
Found at i:73289348 original size:14 final size:15
Alignment explanation
Indices: 73289323--73289351 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
73289313 ATCCCACCTC
73289323 CCATCTACCCCAAAT
1 CCATCTACCCCAAAT
73289338 CCATC-ACCCCAAAT
1 CCATCTACCCCAAAT
73289352 TTTTTTAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.34, C:0.48, G:0.00, T:0.17
Consensus pattern (15 bp):
CCATCTACCCCAAAT
Found at i:73293494 original size:31 final size:31
Alignment explanation
Indices: 73293459--73293517 Score: 118
Period size: 31 Copynumber: 1.9 Consensus size: 31
73293449 TCATATTCTC
73293459 GAATGATATCTTGGACCACTCTAGCCCCTCT
1 GAATGATATCTTGGACCACTCTAGCCCCTCT
73293490 GAATGATATCTTGGACCACTCTAGCCCC
1 GAATGATATCTTGGACCACTCTAGCCCC
73293518 CTCACACGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.24, C:0.32, G:0.17, T:0.27
Consensus pattern (31 bp):
GAATGATATCTTGGACCACTCTAGCCCCTCT
Found at i:73295072 original size:212 final size:212
Alignment explanation
Indices: 73294705--73295129 Score: 778
Period size: 212 Copynumber: 2.0 Consensus size: 212
73294695 ATGCAGCAAC
* *
73294705 TTAAAATAGAGCTCATACGAATTACCACGACTTTAGCGATAATTTTGTAAACAACGTTACAAAGG
1 TTAAAATAGAGCTCATACGAATTACCAAGACTTTAGCGATAATTTTGCAAACAACGTTACAAAGG
*
73294770 CTTATAGGTATGAATTGTAACATGTTTTTTGGTTTATCAACCTTGGGAATCAAAATGATGTGCGT
66 CTTATAGGTATGAATCGTAACATGTTTTTTGGTTTATCAACCTTGGGAATCAAAATGATGTGCGT
73294835 TTTATTTAACTCCTCTACTTCAGCTTGACCGTTGAGAATAGATAAGCAATAACGAGCAATCTCTG
131 TTTATTTAACTCCTCTACTTCAGCTTGACCGTTGAGAATAGATAAGCAATAACGAGCAATCTCTG
*
73294900 ATCCAACAATATGCCAG
196 ATCCAACAATATACCAG
73294917 TTAAAATAGAGCTCATACGAATTACCAAGACTTTAGCGATAATTTTGCAAACAACGTTACAAAGG
1 TTAAAATAGAGCTCATACGAATTACCAAGACTTTAGCGATAATTTTGCAAACAACGTTACAAAGG
*
73294982 CTTATGGGTATGAATCGTAACATGTTTTTTGGTTTATCAACCTTGGGAATCAAAATGATGTGCGT
66 CTTATAGGTATGAATCGTAACATGTTTTTTGGTTTATCAACCTTGGGAATCAAAATGATGTGCGT
* *
73295047 TTTATTTATCTCTTCTACTTCAGCTTGACCGTTGAGAATAGATAAGCAATAACGAGCAATCTCTG
131 TTTATTTAACTCCTCTACTTCAGCTTGACCGTTGAGAATAGATAAGCAATAACGAGCAATCTCTG
*
73295112 ATCCGACAATATACCAG
196 ATCCAACAATATACCAG
73295129 T
1 T
73295130 ACCTTTGGAA
Statistics
Matches: 205, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
212 205 1.00
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32
Consensus pattern (212 bp):
TTAAAATAGAGCTCATACGAATTACCAAGACTTTAGCGATAATTTTGCAAACAACGTTACAAAGG
CTTATAGGTATGAATCGTAACATGTTTTTTGGTTTATCAACCTTGGGAATCAAAATGATGTGCGT
TTTATTTAACTCCTCTACTTCAGCTTGACCGTTGAGAATAGATAAGCAATAACGAGCAATCTCTG
ATCCAACAATATACCAG
Found at i:73299468 original size:20 final size:20
Alignment explanation
Indices: 73299444--73299493 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
73299434 GTGGACAGGC
73299444 CACCAGTGTTGTAGACAAGT
1 CACCAGTGTTGTAGACAAGT
* ** *
73299464 TACCAGTAATGTGGACAAGT
1 CACCAGTGTTGTAGACAAGT
*
73299484 CACTAGTGTT
1 CACCAGTGTT
73299494 ACAGACAAGC
Statistics
Matches: 22, Mismatches: 8, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (20 bp):
CACCAGTGTTGTAGACAAGT
Found at i:73299470 original size:40 final size:40
Alignment explanation
Indices: 73299426--73299530 Score: 129
Period size: 40 Copynumber: 2.6 Consensus size: 40
73299416 AGAGAAACTG
* ** *
73299426 CCAGTAATGTGGACAGGCCACCAGTGTTGTAGACAAGTTA
1 CCAGTAATGTGGACAAGCCACCAGTGTTACAGACAAGCTA
* * *
73299466 CCAGTAATGTGGACAAGTCACTAGTGTTACAGACAAGCTG
1 CCAGTAATGTGGACAAGCCACCAGTGTTACAGACAAGCTA
* *
73299506 CCAATAATGTGGAAAAGCCACCAGT
1 CCAGTAATGTGGACAAGCCACCAGT
73299531 AATGCAGATA
Statistics
Matches: 54, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 54 1.00
ACGTcount: A:0.33, C:0.21, G:0.25, T:0.21
Consensus pattern (40 bp):
CCAGTAATGTGGACAAGCCACCAGTGTTACAGACAAGCTA
Found at i:73299551 original size:20 final size:19
Alignment explanation
Indices: 73299528--73299570 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
73299518 AAAAGCCACC
*
73299528 AGTAATGCAGATAAACTGTT
1 AGTAATGCA-ACAAACTGTT
* *
73299548 AGTATTGCAACAAGCTGTT
1 AGTAATGCAACAAACTGTT
73299567 AGTA
1 AGTA
73299571 TTGTGAACAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.37, C:0.12, G:0.21, T:0.30
Consensus pattern (19 bp):
AGTAATGCAACAAACTGTT
Found at i:73311616 original size:28 final size:27
Alignment explanation
Indices: 73311553--73311622 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
73311543 ATAGTGAGTC
*
73311553 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
73311580 CGCACACTTAGTGCTACATGATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
73311608 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
73311623 GTACAAGTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:73314433 original size:40 final size:40
Alignment explanation
Indices: 73314297--73314440 Score: 155
Period size: 40 Copynumber: 3.6 Consensus size: 40
73314287 GGGTGCATGA
* *
73314297 GCAAATTGTGATATCCGGGCTAAGTCCCG-AGGACATTTAT
1 GCAAATTGTGATATCCGGGCTAAGACCCGAAGG-CATTTGT
* * ** * *
73314337 GCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATTCGT
1 GCAAATTGTGATATCCGGGCTAAGACCCGAAGGCATTTGT
* * *
73314377 GCAAGTTGTTAAATCCGGGCTAAGACCCGAAGGCATTTGT
1 GCAAATTGTGATATCCGGGCTAAGACCCGAAGGCATTTGT
* *
73314417 GCAAATCGTGATATCCGGGTTAAG
1 GCAAATTGTGATATCCGGGCTAAG
73314441 TCCAGTAGGC
Statistics
Matches: 85, Mismatches: 18, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
40 82 0.96
41 3 0.04
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (40 bp):
GCAAATTGTGATATCCGGGCTAAGACCCGAAGGCATTTGT
Found at i:73323435 original size:30 final size:30
Alignment explanation
Indices: 73323399--73323499 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
73323389 GACAAGATTG
* * *
73323399 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
73323429 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
73323457 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
73323486 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
73323500 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:73323511 original size:29 final size:28
Alignment explanation
Indices: 73323428--73323503 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
73323418 AAAATTGTAC
* *
73323428 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
73323456 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
73323485 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
73323504 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:73331287 original size:30 final size:30
Alignment explanation
Indices: 73331251--73331351 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
73331241 GACAAGATTG
* * *
73331251 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
73331281 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
73331309 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
73331338 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
73331352 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:73331363 original size:29 final size:28
Alignment explanation
Indices: 73331280--73331355 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
73331270 AAAATTGTAC
* *
73331280 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
73331308 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
73331337 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
73331356 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:73339166 original size:30 final size:30
Alignment explanation
Indices: 73339130--73339230 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
73339120 GACAAGATTG
* * *
73339130 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
73339160 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
73339188 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
73339217 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
73339231 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:73339242 original size:29 final size:28
Alignment explanation
Indices: 73339159--73339234 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
73339149 AAAATTGTAC
* *
73339159 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
73339187 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
73339216 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
73339235 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:73340796 original size:27 final size:28
Alignment explanation
Indices: 73340766--73340835 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
73340756 ATAGCGAGTC
*
73340766 CGCACACTTAGTGCTATATAAGC-AACT
1 CGCACACTTAGTGCTACATAAGCAAACT
* *
73340793 CGCACACTTAGTGCTACATGATCAAACT
1 CGCACACTTAGTGCTACATAAGCAAACT
73340821 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
73340836 GTACAAGTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 20 0.51
28 19 0.49
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAAGCAAACT
Found at i:73343182 original size:21 final size:21
Alignment explanation
Indices: 73343156--73343199 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
73343146 AACTTATCAT
73343156 GTATGAAACCAATGATATGAG
1 GTATGAAACCAATGATATGAG
73343177 GTATGAAACCAATGATATGAG
1 GTATGAAACCAATGATATGAG
73343198 GT
1 GT
73343200 TTCCATACAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.41, C:0.09, G:0.25, T:0.25
Consensus pattern (21 bp):
GTATGAAACCAATGATATGAG
Found at i:73356654 original size:49 final size:48
Alignment explanation
Indices: 73356530--73356894 Score: 299
Period size: 49 Copynumber: 7.7 Consensus size: 48
73356520 AGGGTATAAT
* *
73356530 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTATC-CA-TCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGAC-TATCACATTCAG
* * * * *
73356577 GTCGATGCCTTGTCCGAGACATGGTCTTACACTGACTATCGAAATTGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTATC-ACATTCAG
* * *
73356626 GCCGACGCCATGTCCCAGACATGGTCTTACACTGGCTTATC-CA-TCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGAC-TATCACATTCAG
** * * * *
73356673 GTTGATGCCATGTCCGAGACATGATCTTACACTGACTATCAAAATTGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTATC-ACATTCAG
* * *
73356722 GCCGACGCCATGTCCCAGACATGGTCTTACACT-ATCTCTCACATATCCG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGA-CTATCACAT-TCAG
* * *
73356771 TACCGATGCCATGTCCCAGACATGGTCTTACACTGACACATCTCA-T-A-
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGAC-TATCACATTCAG
* * *
73356818 GCCGATG-CATGTCCTAGACAT-GTCTTACACTGGCT-T-ACATCTTGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCACA--TTCAG
* *
73356864 GCCCATG-CATGTCCCGGACAT-GTCTTACACT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT
73356895 AGCTCTCGTC
Statistics
Matches: 254, Mismatches: 47, Indels: 35
0.76 0.14 0.10
Matches are distributed among these distances:
41 2 0.01
42 1 0.00
44 13 0.05
45 14 0.06
46 42 0.17
47 64 0.25
48 7 0.03
49 70 0.28
50 36 0.14
51 5 0.02
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCACATTCAG
Found at i:73356822 original size:96 final size:96
Alignment explanation
Indices: 73356530--73356807 Score: 407
Period size: 96 Copynumber: 2.9 Consensus size: 96
73356520 AGGGTATAAT
* *
73356530 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTATCCATCAAGTCGATGCCTTGTCCGAG
1 GCCGACGCCATGTCCCAGACATGGTCTTACACTGGCTTATCCATCAAGTCGATGCCATGTCCGAG
*
73356595 ACATGGTCTTACACTGACTATCGAAATTGAG
66 ACATGGTCTTACACTGACTATCAAAATTGAG
*
73356626 GCCGACGCCATGTCCCAGACATGGTCTTACACTGGCTTATCCATCAAGTTGATGCCATGTCCGAG
1 GCCGACGCCATGTCCCAGACATGGTCTTACACTGGCTTATCCATCAAGTCGATGCCATGTCCGAG
*
73356691 ACATGATCTTACACTGACTATCAAAATTGAG
66 ACATGGTCTTACACTGACTATCAAAATTGAG
** * *
73356722 GCCGACGCCATGTCCCAGACATGGTCTTACACTATC-TCTCACAT-ATCCGTACCGATGCCATGT
1 GCCGACGCCATGTCCCAGACATGGTCTTACACTGGCTTATC-CATCA--AGT--CGATGCCATGT
*
73356785 CCCAGACATGGTCTTACACTGAC
61 CCGAGACATGGTCTTACACTGAC
73356808 ACATCTCATA
Statistics
Matches: 165, Mismatches: 12, Indels: 7
0.90 0.07 0.04
Matches are distributed among these distances:
95 4 0.02
96 128 0.78
97 2 0.01
99 31 0.19
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.26
Consensus pattern (96 bp):
GCCGACGCCATGTCCCAGACATGGTCTTACACTGGCTTATCCATCAAGTCGATGCCATGTCCGAG
ACATGGTCTTACACTGACTATCAAAATTGAG
Found at i:73356859 original size:46 final size:46
Alignment explanation
Indices: 73356530--73356940 Score: 190
Period size: 46 Copynumber: 8.7 Consensus size: 46
73356520 AGGGTATAAT
73356530 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTT--ATC-CATCAA
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACATCTCAT--A
* * * * * * *
73356577 GTCGATGCCTTGTCCGAGACATGGTCTTACACTGACTATCGAAAT-TGA-G
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-T--ACATCTCATA
*
73356626 GCCGACGCCATGTCCCAGACATGGTCTTACACTGGCTT--ATC-CATCAA
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACATCTCAT--A
** * * * * *
73356673 GTTGATGCCATGTCCGAGACATGATCTTACACTGACTATCAAAAT-TGA-G
1 GCCGATG-CATGTCCCAGACATG-TCTTACACTGGCT-T--ACATCTCATA
* ** * *
73356722 GCCGACGCCATGTCCCAGACATGGTCTTACACTATCTCTCACATATCCGTA
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-T-ACATCT-CATA
*
73356773 -CCGATGCCATGTCCCAGACATGGTCTTACACTGAC--ACATCTCATA
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACATCTCATA
*
73356818 GCCGATGCATGTCCTAGACATGTCTTACACTGGCTTACATCT--TGA
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCAT-A
* * * *
73356863 GGCCCATGCATGTCCCGGACATGTCTTACACTAGCTCT-CGTCTCAATA
1 -GCCGATGCATGTCCCAGACATGTCTTACACTGGCT-TACATCTC-ATA
* *
73356911 -CCGATGCATATCCTAGACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
73356941 AGCACACAAA
Statistics
Matches: 286, Mismatches: 48, Indels: 61
0.72 0.12 0.15
Matches are distributed among these distances:
44 16 0.06
45 17 0.06
46 79 0.28
47 64 0.22
48 7 0.02
49 64 0.22
50 33 0.12
52 6 0.02
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.27
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCATA
Found at i:73366565 original size:52 final size:52
Alignment explanation
Indices: 73366475--73366573 Score: 144
Period size: 52 Copynumber: 1.9 Consensus size: 52
73366465 ATGTAAGTCC
* *
73366475 ATATAGATATATGGCTTTGGAGACAGGAATGAGCCATGTAAGCCCATATTAG
1 ATATAGATATATGGCATTGGAGACAGGAATAAGCCATGTAAGCCCATATTAG
* ** *
73366527 ATATATATATATGGCATTGGAGACAGGAATAATTCATGTAAGTCCAT
1 ATATAGATATATGGCATTGGAGACAGGAATAAGCCATGTAAGCCCAT
73366574 GTCGAAGACA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
52 41 1.00
ACGTcount: A:0.36, C:0.12, G:0.22, T:0.29
Consensus pattern (52 bp):
ATATAGATATATGGCATTGGAGACAGGAATAAGCCATGTAAGCCCATATTAG
Found at i:73376032 original size:962 final size:961
Alignment explanation
Indices: 73374144--73376066 Score: 3563
Period size: 962 Copynumber: 2.0 Consensus size: 961
73374134 ATGAGGCTAG
73374144 GTGACATTATGTATAATTATTCATTATGTTGAATGTTGTAATTTATTTGCTTGTAAGCTTACTAA
1 GTGACATTATGTATAATTATTCATTATGTTGAATGTTGTAATTTATTTGCTTGTAAGCTTACTAA
73374209 GCCTAGTGCTTACTCTCTTTATTTTCTTTTTCTTATAGTTTTTATCAAGCCACTCGGGGATCGAA
66 GCCTAGTGCTTACTCTCTTTATTTTCTTTTTCTTATAGTTTTTATCAAGCCACTCGGGGATCGAA
73374274 GGAAACGTCGGAGACCCGATCACACTATCGAAGAAATCACATTGGTATAGTTAGACGTTCGTTTT
131 GGAAACGTCGGAGACCCGATCACACTATCGAAGAAATCACATTGGTATAGTTAGACGTTCGTTTT
73374339 GTGTATGGCATGTATAGGAACTTGGTTTCTTTTGATATGATATGATCAATGAATGATGTGTAAAT
196 GTGTATGGCATGTATAGGAACTTGGTTTCTTTTGATATGATATGATCAATGAATGATGTGTAAAT
73374404 ACTTGCTAGTGATTAGCTAATAGAATGGCTGATGATATACATGTTTAATAGTATGTATGATTAAG
261 ACTTGCTAGTGATTAGCTAATAGAATGGCTGATGATATACATGTTTAATAGTATGTATGATTAAG
73374469 TAGTAACTATCACATGAAAACTATGAAAAATGTGAAAGTAACTTAAAAACGGATTCAAGTATCAG
326 TAGTAACTATCACATGAAAACTATGAAAAATGTGAAAGTAACTTAAAAACGGATTCAAGTATCAG
73374534 AAATAACGTGACTTTGAAAAATCACAAAAAAAATTGTAGAGACATGGTTTGATGGTGAATAATAT
391 AAATAACGTGACTTTGAAAAATCACAAAAAAAATTGTAGAGACATGGTTTGATGGTGAATAATAT
73374599 TAAATTAAAGCTCATTGTGTCTATTTTCATATGGAATAAGCAAAACAGGTAAAGATTTTGTATTT
456 TAAATTAAAGCTCATTGTGTCTATTTTCATATGGAATAAGCAAAACAGGTAAAGATTTTGTATTT
*
73374664 TATAAGATATCTGAGTTTTAGTGAAATAGGGCCAGAGCGATTTCTGGATCCCTGTTCCAATTTGG
521 TATAAGATATCTGAGTTTTAGTGAAATAGGGCCAGAGCGATTTCTGGATCCCTGTTCCAAGTTGG
*
73374729 AAATTCACCATAAATTTTAAAAAAATAATTAGGTGGTTTACTTTATATGGTTAGAATCCTTATTG
586 AAATTCACCATAAATTTTAAAAAAATAATTAGGTGGTGTACTTTATATGGTTAGAATCCTTATTG
* *
73374794 AATCTAGTTTTAATAGAAAAACGGTATAGTCATATGAATTTTTATAGGGAGAAAAGTGGTTCGTA
651 AATCTAGTTTTAATAGAAAAAAGGTATAGTCATATGAATTTTTACAGGGAGAAAAGTGGTTCGTA
*
73374859 GTAAGTAGAGGTCAGTGCAGGAATTCTGAAATAGGGGTAACTTTAACTAAATAAACTGTACTAAT
716 GTAAGTAGAGGTCAGTGCAGGAATTCTGAAACAGGGGTAACTTTAACTAAATAAACTGTACTAAT
*
73374924 TGGCTAAGTCAAAAATTCTAGAAAAAAATTAGTAGATATATATATGAGTCTAGTTTCAGGAAACA
781 TGGCTAAGTCAAAAATTCTAGAAAAAAATTAGTAGATATATATATGAGTCTAGTTTCAGGAAAAA
* * *
73374989 TTTACGGATTAAATTTTGAGTTTTGAAACTCAATAAATGAATTTTTAGCAACCATGACTCAGAAA
846 TTTACGGATTAAATTTCGAGTTTTGAAACTCAAGAAATGAATTTTTAGCAACCATGACGCAGAAA
73375054 AATAGTTTATTTCGAAAATTAAAATAAGTGGTTTAGAGTTGTTTAAAAGGT
911 AATAGTTTATTTCGAAAATTAAAATAAGTGGTTTAGAGTTGTTTAAAAGGT
73375105 GTGACATTATGTATAATTATTCATTATGTTGAATGTTGTAATTTATTTGCTTGTAAGCTTACTAA
1 GTGACATTATGTATAATTATTCATTATGTTGAATGTTGTAATTTATTTGCTTGTAAGCTTACTAA
73375170 GCCTAGTGCTTACTCTCTTTATTTTCTTTTTCTTATAGTTTTTATCAAGCCACTCGGGGATCGAA
66 GCCTAGTGCTTACTCTCTTTATTTTCTTTTTCTTATAGTTTTTATCAAGCCACTCGGGGATCGAA
73375235 GGAAACGTCGGAGACCCGATCACACTATCGAAGAAATCACATTGGTATAGTTAGACGTTTCGTTT
131 GGAAACGTCGGAGACCCGATCACACTATCGAAGAAATCACATTGGTATAGTTAGACG-TTCGTTT
73375300 TGTGTATGGCATGTATAGGAACTTGGTTTCTTTTGATATGATATGATCAATGAATGATGTGTAAA
195 TGTGTATGGCATGTATAGGAACTTGGTTTCTTTTGATATGATATGATCAATGAATGATGTGTAAA
73375365 TACTTGCTAGTGATTAGCTAATAGAATGGCTGATGATATACATGTTTAATAGTATGTATGATTAA
260 TACTTGCTAGTGATTAGCTAATAGAATGGCTGATGATATACATGTTTAATAGTATGTATGATTAA
*
73375430 GTAGTAACTATCACATGAAAACTATGAAAAATGTGAAAGTAACTTAAAAATGGATTCAAGTATCA
325 GTAGTAACTATCACATGAAAACTATGAAAAATGTGAAAGTAACTTAAAAACGGATTCAAGTATCA
73375495 GAAATAACGTGACTTTGAAAAATCAC-AAAAAAATTGTAGAGACATGGTTTGATGGTGAATAATA
390 GAAATAACGTGACTTTGAAAAATCACAAAAAAAATTGTAGAGACATGGTTTGATGGTGAATAATA
* *
73375559 TATGAAATTAAATCTCATTGTGTCTATTTTCATATGGAATAAGCAAAACAGGTAAAGGTTTTGTA
455 T-T-AAATTAAAGCTCATTGTGTCTATTTTCATATGGAATAAGCAAAACAGGTAAAGATTTTGTA
73375624 TTTTATAAGATATCTGAGTTTTAGTGAAATAGGGCCAGAGC-ATTTCTGGATCCCCTGTTCCAAA
518 TTTTATAAGATATCTGAGTTTTAGTGAAATAGGGCCAGAGCGATTTCTGGAT-CCCTGTTCC-AA
73375688 GTTGGAAATTCACCATAAATTTTAAAAAAATAATTAGGTGGTGTACTTTATATGGTTAGAATCCT
581 GTTGGAAATTCACCATAAATTTTAAAAAAATAATTAGGTGGTGTACTTTATATGGTTAGAATCCT
*
73375753 TATTGAATCTAGTTTTAATAGAAACAAAGGTATAGTCATATGATTTTTTACAGGGAGAAAAGTGG
646 TATTGAATCTAGTTTTAATAGAAA-AAAGGTATAGTCATATGAATTTTTACAGGGAGAAAAGTGG
* *
73375818 TTCGTAGTAAGTAGAGGTCAGTGTAGTAATTCTGAAACAGGGGTAACTTTAACT-AATAAACTGT
710 TTCGTAGTAAGTAGAGGTCAGTGCAGGAATTCTGAAACAGGGGTAACTTTAACTAAATAAACTGT
73375882 ACTAATTGGCTAAGTCAAAAATTCTAG-AAAAAATTA-TAGATATATATATGAGTCTAGTTTCAG
775 ACTAATTGGCTAAGTCAAAAATTCTAGAAAAAAATTAGTAGATATATATATGAGTCTAGTTTCAG
* * *
73375945 GAAAAATTTATGGATCTTAATTTCGAGTTTTGAAACT-GAGAAATGAATTTTTAAGCAACCATGA
840 GAAAAATTTACGGAT-TAAATTTCGAGTTTTGAAACTCAAGAAATGAATTTTT-AGCAACCATGA
73376009 CGCAGAAAAATAGTTTA-TTCGAAAATTAAAATAAGTGGTTTAGAGTTGTTTAAAAGGT
903 CGCAGAAAAATAGTTTATTTCGAAAATTAAAATAAGTGGTTTAGAGTTGTTTAAAAGGT
73376067 AAGATAAGTT
Statistics
Matches: 936, Mismatches: 18, Indels: 15
0.97 0.02 0.02
Matches are distributed among these distances:
961 226 0.24
962 332 0.35
963 164 0.18
964 126 0.13
965 88 0.09
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.35
Consensus pattern (961 bp):
GTGACATTATGTATAATTATTCATTATGTTGAATGTTGTAATTTATTTGCTTGTAAGCTTACTAA
GCCTAGTGCTTACTCTCTTTATTTTCTTTTTCTTATAGTTTTTATCAAGCCACTCGGGGATCGAA
GGAAACGTCGGAGACCCGATCACACTATCGAAGAAATCACATTGGTATAGTTAGACGTTCGTTTT
GTGTATGGCATGTATAGGAACTTGGTTTCTTTTGATATGATATGATCAATGAATGATGTGTAAAT
ACTTGCTAGTGATTAGCTAATAGAATGGCTGATGATATACATGTTTAATAGTATGTATGATTAAG
TAGTAACTATCACATGAAAACTATGAAAAATGTGAAAGTAACTTAAAAACGGATTCAAGTATCAG
AAATAACGTGACTTTGAAAAATCACAAAAAAAATTGTAGAGACATGGTTTGATGGTGAATAATAT
TAAATTAAAGCTCATTGTGTCTATTTTCATATGGAATAAGCAAAACAGGTAAAGATTTTGTATTT
TATAAGATATCTGAGTTTTAGTGAAATAGGGCCAGAGCGATTTCTGGATCCCTGTTCCAAGTTGG
AAATTCACCATAAATTTTAAAAAAATAATTAGGTGGTGTACTTTATATGGTTAGAATCCTTATTG
AATCTAGTTTTAATAGAAAAAAGGTATAGTCATATGAATTTTTACAGGGAGAAAAGTGGTTCGTA
GTAAGTAGAGGTCAGTGCAGGAATTCTGAAACAGGGGTAACTTTAACTAAATAAACTGTACTAAT
TGGCTAAGTCAAAAATTCTAGAAAAAAATTAGTAGATATATATATGAGTCTAGTTTCAGGAAAAA
TTTACGGATTAAATTTCGAGTTTTGAAACTCAAGAAATGAATTTTTAGCAACCATGACGCAGAAA
AATAGTTTATTTCGAAAATTAAAATAAGTGGTTTAGAGTTGTTTAAAAGGT
Found at i:73391852 original size:44 final size:45
Alignment explanation
Indices: 73391798--73391902 Score: 135
Period size: 45 Copynumber: 2.4 Consensus size: 45
73391788 GGGCGTTACA
* *
73391798 CTAGCTGGCTATAATGCTGGTGAAATGA-TA-TCGGGCCTT-TGAGC
1 CTAGCAGGCTATAATGCTGGTGAAAT-ACTATTCGGCCCTTCT-AGC
* *
73391842 CTAGCAGGCTATGATGCTGGTGAGATACTATTCGGCCCTTCTAGC
1 CTAGCAGGCTATAATGCTGGTGAAATACTATTCGGCCCTTCTAGC
73391887 CTAGCAGGCTATAATG
1 CTAGCAGGCTATAATG
73391903 TCGATGGATG
Statistics
Matches: 53, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
43 1 0.02
44 25 0.47
45 26 0.49
46 1 0.02
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.29
Consensus pattern (45 bp):
CTAGCAGGCTATAATGCTGGTGAAATACTATTCGGCCCTTCTAGC
Found at i:73399638 original size:45 final size:44
Alignment explanation
Indices: 73399525--73399777 Score: 343
Period size: 44 Copynumber: 5.8 Consensus size: 44
73399515 TATGGTACTA
* *
73399525 ATCGGGCCTTCGAGCCTAGCATGCTATAATGCCAGTGAAATGAT
1 ATCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGAT
* * *
73399569 ATCGGGCCTTTGAGCCTAGCAGGCTATAATGCTGGTGAGAT-ACT
1 ATCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGA-T
*
73399613 ATTCGGGCCTTCGAGCCTAGTAGGCTATAATGCCGGTGAAATGAT
1 A-TCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGAT
* * *
73399658 ATCGTGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGAT-ACT
1 ATCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGA-T
*
73399702 ATTCGGGCCTTCGAGCCTAGTAGGCTATAATGCCGGTGAAATGAT
1 A-TCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGAT
*
73399747 ATCGGG-CTTCGAGCCTAGCAGGCGA-AATGCC
1 ATCGGGCCTTCGAGCCTAGCAGGCTATAATGCC
73399778 AATGGATGAA
Statistics
Matches: 184, Mismatches: 19, Indels: 14
0.85 0.09 0.06
Matches are distributed among these distances:
42 6 0.03
43 19 0.10
44 81 0.44
45 76 0.41
46 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (44 bp):
ATCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGAT
Found at i:73399671 original size:89 final size:88
Alignment explanation
Indices: 73399520--73399777 Score: 419
Period size: 89 Copynumber: 2.9 Consensus size: 88
73399510 TATCGTATGG
* * * *
73399520 TACTAATCGGGCCTTCGAGCCTAGCATGCTATAATGCCAGTGAAATGATATCGGGCCTTTGAGCC
1 TACTATTCGGGCCTTCGAGCCTAGTAGGCTATAATGCCGGTGAAATGATATC-GGCCTTTGAGCC
*
73399585 TAGCAGGCTATAATGCTGGTGAGA
65 TAGCAGGCTATAATGCCGGTGAGA
73399609 TACTATTCGGGCCTTCGAGCCTAGTAGGCTATAATGCCGGTGAAATGATATCGTGCCTTTGAGCC
1 TACTATTCGGGCCTTCGAGCCTAGTAGGCTATAATGCCGGTGAAATGATATCG-GCCTTTGAGCC
73399674 TAGCAGGCTATAATGCCGGTGAGA
65 TAGCAGGCTATAATGCCGGTGAGA
* *
73399698 TACTATTCGGGCCTTCGAGCCTAGTAGGCTATAATGCCGGTGAAATGATATCGGGCTTCGAGCCT
1 TACTATTCGGGCCTTCGAGCCTAGTAGGCTATAATGCCGGTGAAATGATATCGGCCTTTGAGCCT
*
73399763 AGCAGGCGA-AATGCC
66 AGCAGGCTATAATGCC
73399778 AATGGATGAA
Statistics
Matches: 160, Mismatches: 8, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
87 6 0.04
88 19 0.12
89 135 0.84
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (88 bp):
TACTATTCGGGCCTTCGAGCCTAGTAGGCTATAATGCCGGTGAAATGATATCGGCCTTTGAGCCT
AGCAGGCTATAATGCCGGTGAGA
Found at i:73405162 original size:25 final size:25
Alignment explanation
Indices: 73405134--73405259 Score: 72
Period size: 25 Copynumber: 5.3 Consensus size: 25
73405124 CGAATGGCCA
73405134 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
* * *
73405159 ATGTGAT-AAGGCCG-A-ATGGC-CA-
1 ATGTGATGAATG-TGAACAT-GCATAT
*
73405181 ATGTGATGGATGTGAACATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
* ** *
73405206 ATGTGAT-AAGGCCAA-ATGGC-CA-
1 ATGTGATGAATGTGAACAT-GCATAT
*
73405228 ATGTGATGAATGTGAGCATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
*
73405253 GTGTGAT
1 ATGTGAT
73405260 AAGGCCGAAT
Statistics
Matches: 71, Mismatches: 18, Indels: 24
0.63 0.16 0.21
Matches are distributed among these distances:
22 15 0.21
23 17 0.24
24 18 0.25
25 21 0.30
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.28
Consensus pattern (25 bp):
ATGTGATGAATGTGAACATGCATAT
Found at i:73405167 original size:47 final size:47
Alignment explanation
Indices: 73405108--73405327 Score: 341
Period size: 47 Copynumber: 4.7 Consensus size: 47
73405098 GTGAATGTGT
*
73405108 ATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
*
73405155 ATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAACATGC
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
* *
73405202 ATATATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAGCATGC
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
* * *
73405249 ATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGC
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
* * * *
73405296 ATATATGTGGTAAAGCCGAATGACTAATGTGA
1 ATATATGTGATAAGGCCGAATGGCCAATGTGA
73405328 AATGTGTATG
Statistics
Matches: 157, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 157 1.00
ACGTcount: A:0.34, C:0.12, G:0.28, T:0.25
Consensus pattern (47 bp):
ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
Found at i:73405187 original size:22 final size:22
Alignment explanation
Indices: 73405116--73405187 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
73405106 GTATATATGA
73405116 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
73405138 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
73405163 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
73405185 GAT
1 GAT
73405188 GGATGTGAAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:73405453 original size:98 final size:96
Alignment explanation
Indices: 73405298--73405481 Score: 298
Period size: 98 Copynumber: 1.9 Consensus size: 96
73405288 GAACATGCAT
* *
73405298 ATATGTGGTAAAGCCGAATGACTAATGTGAAATGTGTATGAGATATGTATATGTGGTAAAGCCGA
1 ATATGTGGTAAAGCCGAATGACTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
73405363 ATGGCTAATGTGAAATATGTATGAGATATGC
66 ATGGCTAATGTGAAATATGTATGAGATATGC
*
73405394 ATATGTGGTAAAGCCGAATG-GTCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGC
1 ATATGTGGTAAAGCCGAATGACT-AATGTG-AA-ATATATATGAGATATGTATATGTGGTAAAGC
*
73405458 CGAATGGCTAGTGTGAAATATGTA
63 CGAATGGCTAATGTGAAATATGTA
73405482 GGCGATGTGC
Statistics
Matches: 81, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
95 1 0.01
96 26 0.32
97 2 0.02
98 52 0.64
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.30
Consensus pattern (96 bp):
ATATGTGGTAAAGCCGAATGACTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
ATGGCTAATGTGAAATATGTATGAGATATGC
Found at i:73405497 original size:50 final size:48
Alignment explanation
Indices: 73405297--73405481 Score: 291
Period size: 48 Copynumber: 3.8 Consensus size: 48
73405287 TGAACATGCA
* *
73405297 TATATGTGGTAAAGCCGAATGACTAATGTGAAATGTGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
73405345 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
73405393 CATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
*
73405443 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
73405482 GGCGATGTGC
Statistics
Matches: 126, Mismatches: 7, Indels: 8
0.89 0.05 0.06
Matches are distributed among these distances:
47 1 0.01
48 79 0.63
49 4 0.03
50 41 0.33
51 1 0.01
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:73405735 original size:37 final size:37
Alignment explanation
Indices: 73405627--73405735 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
73405617 GGAAATATAT
*
73405627 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
73405664 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * *
73405701 TCCGGGTAAGACTCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
73405736 CGTCTGAGCT
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.23, C:0.18, G:0.31, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:73411193 original size:15 final size:15
Alignment explanation
Indices: 73411173--73411202 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
73411163 TGATGACCTC
73411173 ATTTCATAATTGATT
1 ATTTCATAATTGATT
*
73411188 ATTTCATGATTGATT
1 ATTTCATAATTGATT
73411203 GAGTGCATGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.07, G:0.10, T:0.53
Consensus pattern (15 bp):
ATTTCATAATTGATT
Found at i:73413052 original size:15 final size:15
Alignment explanation
Indices: 73413007--73413076 Score: 86
Period size: 15 Copynumber: 4.7 Consensus size: 15
73412997 GAGATGACAT
*
73413007 GAAAACCAAGATAAA
1 GAAATCCAAGATAAA
* * * *
73413022 GAAGTCTAGGAAAAA
1 GAAATCCAAGATAAA
73413037 GAAATCCAAGATAAA
1 GAAATCCAAGATAAA
*
73413052 GAAATCCAAGATACA
1 GAAATCCAAGATAAA
73413067 GAAATCCAAG
1 GAAATCCAAG
73413077 GTACAATATC
Statistics
Matches: 45, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.57, C:0.14, G:0.17, T:0.11
Consensus pattern (15 bp):
GAAATCCAAGATAAA
Found at i:73413070 original size:30 final size:30
Alignment explanation
Indices: 73412998--73413076 Score: 86
Period size: 30 Copynumber: 2.6 Consensus size: 30
73412988 TACAAAATAG
* * *
73412998 AGATGACATGAAAACCAAGATAAAGAAGTCTA
1 AGAT-ACA-GAAATCCAAGATAAAGAAATCCA
* * *
73413030 GGAAAAAGAAATCCAAGATAAAGAAATCCA
1 AGATACAGAAATCCAAGATAAAGAAATCCA
73413060 AGATACAGAAATCCAAG
1 AGATACAGAAATCCAAG
73413077 GTACAATATC
Statistics
Matches: 38, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
30 34 0.89
31 2 0.05
32 2 0.05
ACGTcount: A:0.56, C:0.14, G:0.18, T:0.13
Consensus pattern (30 bp):
AGATACAGAAATCCAAGATAAAGAAATCCA
Found at i:73413081 original size:15 final size:15
Alignment explanation
Indices: 73413036--73413081 Score: 74
Period size: 15 Copynumber: 3.1 Consensus size: 15
73413026 TCTAGGAAAA
*
73413036 AGAAATCCAAGATAA
1 AGAAATCCAAGATAC
73413051 AGAAATCCAAGATAC
1 AGAAATCCAAGATAC
*
73413066 AGAAATCCAAGGTAC
1 AGAAATCCAAGATAC
73413081 A
1 A
73413082 ATATCATAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 29 1.00
ACGTcount: A:0.54, C:0.17, G:0.15, T:0.13
Consensus pattern (15 bp):
AGAAATCCAAGATAC
Found at i:73424411 original size:40 final size:40
Alignment explanation
Indices: 73424284--73424413 Score: 156
Period size: 40 Copynumber: 3.2 Consensus size: 40
73424274 ATGCTGGAAA
* *
73424284 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
73424324 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
* *
73424364 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
73424404 TTATATCCGG
1 TTATATCCGG
73424414 TTGCATTCCG
Statistics
Matches: 75, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.05
40 71 0.95
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:73426738 original size:93 final size:93
Alignment explanation
Indices: 73426579--73426748 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
73426569 GGATGGTTGA
* * *
73426579 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCATTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
73426644 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
73426672 GCATCCGAGCTCGTTGAGTTGAGTCCGAA-TTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCC-AAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
73426736 TTGAGTCCGAGTT
65 TTGAGTCCGAGTT
73426749 TGCTTATGGG
Statistics
Matches: 71, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
93 69 0.97
94 2 0.03
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:73426755 original size:46 final size:46
Alignment explanation
Indices: 73426583--73426757 Score: 160
Period size: 46 Copynumber: 3.8 Consensus size: 46
73426573 GGTTGAGCAT
* * * *
73426583 CCGAACTCGTTGAGTTGAGTCCAAGTTCATTTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * * *
73426629 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
* *
73426674 ATCCGAGCTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* **
73426722 CCGAGCTCGTTGAGTTGAGTCCGAGTTTGCTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
73426758 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 16, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
45 3 0.03
46 60 0.58
47 26 0.25
48 4 0.04
50 3 0.03
51 3 0.03
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:73433733 original size:46 final size:46
Alignment explanation
Indices: 73433683--73433858 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
73433673 TGGTTGAGCA
73433683 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
73433729 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
73433774 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
73433822 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
73433859 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:73433839 original size:93 final size:93
Alignment explanation
Indices: 73433680--73433851 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
73433670 GGATGGTTGA
* *
73433680 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
73433745 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
73433773 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
73433838 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
73433852 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:73438851 original size:26 final size:26
Alignment explanation
Indices: 73438822--73438871 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
73438812 GCTATGCGTG
*
73438822 GGAATAAAGAGAGGAAATGAGAGAAT
1 GGAAGAAAGAGAGGAAATGAGAGAAT
* * *
73438848 GGAAGAATGATATGAAATGAGAGA
1 GGAAGAAAGAGAGGAAATGAGAGA
73438872 TGTGGGATTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.52, C:0.00, G:0.34, T:0.14
Consensus pattern (26 bp):
GGAAGAAAGAGAGGAAATGAGAGAAT
Found at i:73440991 original size:27 final size:27
Alignment explanation
Indices: 73440591--73440990 Score: 469
Period size: 27 Copynumber: 14.8 Consensus size: 27
73440581 ATTACCAAAG
* **
73440591 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCATTT
*
73440618 TACCCTTGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
*
73440645 TACCCTTGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
73440672 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* * **
73440699 TACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCATTT
73440726 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* * *
73440753 TACCCTCGATTTACAGAATTATCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
73440780 TACCCCCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* * * * **
73440807 TACCCTCAATTTACAAAATTACTGA-AA
1 TACCCTCGATTTATAGAATTAC-CATTT
* * * ***
73440834 TACCCTTGGTTTATAAAATTACCAAAG
1 TACCCTCGATTTATAGAATTACCATTT
* * *
73440861 TACCCTTGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
*
73440888 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
73440915 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
**
73440942 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* * *
73440969 TACCCTCAATTTACAAAATTAC
1 TACCCTCGATTTATAGAATTAC
73440991 TAAAATACCC
Statistics
Matches: 323, Mismatches: 48, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
26 1 0.00
27 322 1.00
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCATTT
Found at i:73441000 original size:54 final size:54
Alignment explanation
Indices: 73440591--73440991 Score: 525
Period size: 54 Copynumber: 7.4 Consensus size: 54
73440581 ATTACCAAAG
*
73440591 TACCCTCGATTTACAGAATTACTGTTTTACCCTTGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTATAGAATTACCATTT
* * **
73440645 TACCCTTGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTATAGAATTACCATTT
*
73440699 TACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTATAGAATTACCATTT
* *
73440753 TACCCTCGATTTACAGAATTA-TCGTTTTACCCCCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACT-GTTTTACCCTCGATTTATAGAATTACCATTT
* * *** * * * ***
73440807 TACCCTCAATTTACAAAATTACTGAAATACCCTTGGTTTATAAAATTACCAAAG
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTATAGAATTACCATTT
* * *
73440861 TACCCTTGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTATAGAATTACCATTT
* ** **
73440915 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTATAGAATTACCATTT
* *
73440969 TACCCTCAATTTACAAAATTACT
1 TACCCTCGATTTACAGAATTACT
73440992 AAAATACCCC
Statistics
Matches: 295, Mismatches: 50, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
53 1 0.00
54 293 0.99
55 1 0.00
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.39
Consensus pattern (54 bp):
TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTATAGAATTACCATTT
Found at i:73442364 original size:26 final size:26
Alignment explanation
Indices: 73442335--73442390 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
73442325 TGATACAAAT
73442335 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
73442361 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
73442387 TGAT
1 TGAT
73442391 GGGAATTTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:73443580 original size:8 final size:8
Alignment explanation
Indices: 73443567--73443596 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
73443557 AGATCGGCAC
73443567 AAGCCGAA
1 AAGCCGAA
73443575 AAGCCGAA
1 AAGCCGAA
*
73443583 ATGCCGAA
1 AAGCCGAA
73443591 AAGCCG
1 AAGCCG
73443597 GTATTTTGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.43, C:0.27, G:0.27, T:0.03
Consensus pattern (8 bp):
AAGCCGAA
Found at i:73444027 original size:27 final size:27
Alignment explanation
Indices: 73443989--73444063 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 27
73443979 AAACGTCCTA
*
73443989 GTGGCTATGCCACAATTATCTG-ATCTG
1 GTGGCTATGCCACAA-TATCTGTATCGG
*
73444016 GTGGCTCTGCCACAATATCTGTATCGG
1 GTGGCTATGCCACAATATCTGTATCGG
* *
73444043 GTGACT-TCGTCACAATATCTG
1 GTGGCTAT-GCCACAATATCTG
73444064 GTAGCCTCGC
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
26 7 0.17
27 35 0.83
ACGTcount: A:0.21, C:0.24, G:0.23, T:0.32
Consensus pattern (27 bp):
GTGGCTATGCCACAATATCTGTATCGG
Found at i:73451215 original size:28 final size:28
Alignment explanation
Indices: 73451183--73451281 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
73451173 GCAATAAGCC
*
73451183 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
73451211 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
73451239 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
73451268 CGCACACTTAGTGC
1 CGCACACTTAGTGC
73451282 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:73463717 original size:40 final size:40
Alignment explanation
Indices: 73463662--73463746 Score: 170
Period size: 40 Copynumber: 2.1 Consensus size: 40
73463652 AACAAGTCTT
73463662 AATAGATATATCAATTCATTATTAGCATTATGAATACAAA
1 AATAGATATATCAATTCATTATTAGCATTATGAATACAAA
73463702 AATAGATATATCAATTCATTATTAGCATTATGAATACAAA
1 AATAGATATATCAATTCATTATTAGCATTATGAATACAAA
73463742 AATAG
1 AATAG
73463747 TGCTAACGAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 45 1.00
ACGTcount: A:0.48, C:0.09, G:0.08, T:0.34
Consensus pattern (40 bp):
AATAGATATATCAATTCATTATTAGCATTATGAATACAAA
Found at i:73465628 original size:18 final size:18
Alignment explanation
Indices: 73465605--73465651 Score: 85
Period size: 18 Copynumber: 2.6 Consensus size: 18
73465595 TCGTTGCGTT
*
73465605 ATTTTGAAAACAATTATC
1 ATTTTGGAAACAATTATC
73465623 ATTTTGGAAACAATTATC
1 ATTTTGGAAACAATTATC
73465641 ATTTTGGAAAC
1 ATTTTGGAAAC
73465652 GCGCCCTAGG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.40, C:0.11, G:0.11, T:0.38
Consensus pattern (18 bp):
ATTTTGGAAACAATTATC
Found at i:73466144 original size:30 final size:31
Alignment explanation
Indices: 73466068--73466150 Score: 143
Period size: 31 Copynumber: 2.7 Consensus size: 31
73466058 TTAGTCTCGA
73466068 CATAT-ACTAGGCCGAAGCCTTTTCATAAAT
1 CATATCACTAGGCCGAAGCCTTTTCATAAAT
*
73466098 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTAGGCCGAAGCCTTTTCATAAAT
73466129 CATATCACT-GGCCGAAGCCTTT
1 CATATCACTAGGCCGAAGCCTTT
73466151 ACTGTAAGCG
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
30 18 0.35
31 33 0.65
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.29
Consensus pattern (31 bp):
CATATCACTAGGCCGAAGCCTTTTCATAAAT
Found at i:73466400 original size:24 final size:25
Alignment explanation
Indices: 73466368--73466436 Score: 97
Period size: 25 Copynumber: 2.8 Consensus size: 25
73466358 CTCTTTTAAT
73466368 AACTAGGGCAAAGCCC-TTTCTGATA
1 AACTAGGGCAAAGCCCTTTTC-GATA
*
73466393 AACT-GGGCAAAGCCCTTTTCGGTA
1 AACTAGGGCAAAGCCCTTTTCGATA
*
73466417 AACTAGGGCAGAGCCCTTTT
1 AACTAGGGCAAAGCCCTTTT
73466437 AGCACTTCCT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
24 18 0.45
25 22 0.55
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.25
Consensus pattern (25 bp):
AACTAGGGCAAAGCCCTTTTCGATA
Found at i:73467251 original size:27 final size:27
Alignment explanation
Indices: 73467221--73467285 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
73467211 GGGCATATTC
73467221 GTCATTTTACCATACAAGGG-TATTACG
1 GTCATTTTACCATACAAGGGCT-TTACG
** * *
73467248 GTCACATTACCCTACAAGGGCTTTATG
1 GTCATTTTACCATACAAGGGCTTTACG
*
73467275 GTCTTTTTACC
1 GTCATTTTACC
73467286 TATTAGGGGT
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
27 29 0.97
28 1 0.03
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACG
Found at i:73467369 original size:27 final size:27
Alignment explanation
Indices: 73467339--73467445 Score: 119
Period size: 27 Copynumber: 3.9 Consensus size: 27
73467329 GTAAATCTAC
73467339 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
*
73467366 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTTC-AGTAATTTTGT
* *
73467392 AGAAGTCAAGGGTATTTCTGTAATTTTGT
1 A-AA-CCAAGGGTATTTCAGTAATTTTGT
* **
73467421 AAACCAGGGGTATTTTGGTAATTTT
1 AAACCAAGGGTATTTCAGTAATTTT
73467446 ACAAATTGAG
Statistics
Matches: 67, Mismatches: 8, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
26 2 0.03
27 42 0.63
28 21 0.31
29 2 0.03
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:73467458 original size:27 final size:25
Alignment explanation
Indices: 73467428--73467524 Score: 113
Period size: 27 Copynumber: 3.6 Consensus size: 25
73467418 TGTAAACCAG
73467428 GGGTATTTTGGTAATTTTACAAATTGA
1 GGGTATTTTGGTAATTTTACAAA-T-A
* * *
73467455 GGGTATTTCGGTAATTTCACAAACCA
1 GGGTATTTTGGTAATTTTACAAA-TA
73467481 GTGGTATTTTGGTAATTTTACAAACTA
1 G-GGTATTTTGGTAATTTTACAAA-TA
73467508 GGGGTATTTTGGTAATT
1 -GGGTATTTTGGTAATT
73467525 CTATCCTACA
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
26 2 0.03
27 58 0.95
28 1 0.02
ACGTcount: A:0.28, C:0.08, G:0.23, T:0.41
Consensus pattern (25 bp):
GGGTATTTTGGTAATTTTACAAATA
Found at i:73467470 original size:54 final size:53
Alignment explanation
Indices: 73467345--73467524 Score: 191
Period size: 54 Copynumber: 3.3 Consensus size: 53
73467335 CTACAAACCA
* * * * * *
73467345 AGGGTATTTCAGTAATTTTGTAAACCAATGGTATTTCT-ATAATTTTTAGAAGTCA
1 AGGGTATTTCGGTAATTTTGTAAACCAGTGGTATTT-TGGTAA-TTTTACAAAT-T
* *
73467400 AGGGTATTTCTGTAATTTTGTAAACCAGGGGTATTTTGGTAATTTTACAAATT
1 AGGGTATTTCGGTAATTTTGTAAACCAGTGGTATTTTGGTAATTTTACAAATT
*** *
73467453 GAGGGTATTTCGGTAATTTCACAAACCAGTGGTATTTTGGTAATTTTACAAACT
1 -AGGGTATTTCGGTAATTTTGTAAACCAGTGGTATTTTGGTAATTTTACAAATT
*
73467507 AGGGGTATTTTGGTAATT
1 A-GGGTATTTCGGTAATT
73467525 CTATCCTACA
Statistics
Matches: 108, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
53 1 0.01
54 71 0.66
55 36 0.33
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.41
Consensus pattern (53 bp):
AGGGTATTTCGGTAATTTTGTAAACCAGTGGTATTTTGGTAATTTTACAAATT
Found at i:73467539 original size:81 final size:81
Alignment explanation
Indices: 73467402--73467557 Score: 199
Period size: 81 Copynumber: 1.9 Consensus size: 81
73467392 AGAAGTCAAG
** * ** *
73467402 GGTATTTCTGTAATTTTGTAAACCAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGT
1 GGTATTTCTGTAATTTTACAAACCAGGGGTATTTTGGTAATTCTACAAATCAAGGGTATTTCAGT
73467467 AATTTCACAAACCAGT
66 AATTTCACAAACCAGT
* **
73467483 GGTATTT-TGGTAATTTTACAAACTAGGGGTATTTTGGTAATTCTATCCTA-CAAGGGTATTTCA
1 GGTATTTCT-GTAATTTTACAAACCAGGGGTATTTTGGTAATTCTA-CAAATCAAGGGTATTTCA
73467546 GTAATTTCACAA
64 GTAATTTCACAA
73467558 TCGAGGGTAA
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
80 1 0.02
81 61 0.95
82 2 0.03
ACGTcount: A:0.29, C:0.12, G:0.20, T:0.40
Consensus pattern (81 bp):
GGTATTTCTGTAATTTTACAAACCAGGGGTATTTTGGTAATTCTACAAATCAAGGGTATTTCAGT
AATTTCACAAACCAGT
Found at i:73467593 original size:27 final size:27
Alignment explanation
Indices: 73467556--73467647 Score: 132
Period size: 27 Copynumber: 3.4 Consensus size: 27
73467546 GTAATTTCAC
73467556 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
*
73467583 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTTTGTA
* * *
73467610 AATCGAGGGTAAAACGATAATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTGTA
73467637 AATCGAGGGTA
1 AATCGAGGGTA
73467648 CTTTGGTAAT
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
26 1 0.02
27 56 0.97
28 1 0.02
ACGTcount: A:0.39, C:0.08, G:0.25, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTTTGTA
Found at i:73467670 original size:54 final size:53
Alignment explanation
Indices: 73467546--73467672 Score: 141
Period size: 54 Copynumber: 2.4 Consensus size: 53
73467536 GGGTATTTCA
* * * *
73467546 GTAATTTCACAATCGAGGGTAAAACGGTAATTTTGTAAACTGAGGGTAAAATG
1 GTAATTTTACAATCGAGGGTAAAACGATAATTCTATAAACTGAGGGTAAAATG
***
73467599 GTAATTTTGTA-AATCGAGGGTAAAACGATAATTCTATAAA-TCGAGGGTACTTTG
1 GTAA-TTT-TACAATCGAGGGTAAAACGATAATTCTATAAACT-GAGGGTAAAATG
73467653 GTAATTTTACAAGTCGAGGG
1 GTAATTTTACAA-TCGAGGG
73467673 CATTTCAATA
Statistics
Matches: 62, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
52 2 0.03
53 10 0.16
54 49 0.79
55 1 0.02
ACGTcount: A:0.35, C:0.09, G:0.24, T:0.31
Consensus pattern (53 bp):
GTAATTTTACAATCGAGGGTAAAACGATAATTCTATAAACTGAGGGTAAAATG
Found at i:73470066 original size:30 final size:31
Alignment explanation
Indices: 73469990--73470072 Score: 134
Period size: 31 Copynumber: 2.7 Consensus size: 31
73469980 TTAGTCTCGA
*
73469990 CATAT-ACTAGGCCGATGCCTTTTCATAAAT
1 CATATCACTAGGCCGAAGCCTTTTCATAAAT
*
73470020 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTAGGCCGAAGCCTTTTCATAAAT
73470051 CATATCACT-GGCCGAAGCCTTT
1 CATATCACTAGGCCGAAGCCTTT
73470073 ACTGTAAGCG
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
30 18 0.36
31 32 0.64
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.30
Consensus pattern (31 bp):
CATATCACTAGGCCGAAGCCTTTTCATAAAT
Found at i:73470320 original size:25 final size:25
Alignment explanation
Indices: 73470292--73470361 Score: 106
Period size: 25 Copynumber: 2.8 Consensus size: 25
73470282 CTCTTTTAAT
73470292 AACTGGGGCAAAGCCC-TTTCTGATA
1 AACTGGGGCAAAGCCCTTTTC-GATA
*
73470317 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
73470342 AACTGGGGCAGAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
73470362 AGCACTTCCT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
25 38 0.90
26 4 0.10
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.24
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:73471409 original size:27 final size:27
Alignment explanation
Indices: 73471241--73471447 Score: 148
Period size: 27 Copynumber: 7.6 Consensus size: 27
73471231 CATCCTACAA
* * * *
73471241 GGGTGTTTTGGTAAATCTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
** ** *
73471268 GGGTATTTCAGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* * * * *
73471295 TGGTATTTCT-ATAATTTTTAGAAAGTCAA
1 GGGTATTT-TGGTAA-TTTTACAAA-CCAG
* **
73471324 GGGTATTTTTGTAATTTTGTAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
**
73471351 GGGTATTTTGGTAATTTTACAAA-TTG
1 GGGTATTTTGGTAATTTTACAAACCAG
** *
73471377 AGGGTATTTCAGTAATTTCACAAACCAG
1 -GGGTATTTTGGTAATTTTACAAACCAG
* *
73471405 TGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
73471432 GGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
73471448 CTATCCTGCA
Statistics
Matches: 139, Mismatches: 35, Indels: 12
0.75 0.19 0.06
Matches are distributed among these distances:
26 1 0.01
27 109 0.78
28 16 0.12
29 13 0.09
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:73471410 original size:54 final size:55
Alignment explanation
Indices: 73471246--73471427 Score: 199
Period size: 54 Copynumber: 3.3 Consensus size: 55
73471236 TACAAGGGTG
* * * *
73471246 TTTTGGTAAATCTACAAA-CCAAGGGTATTTCAGTAATTTTGTAAACCAATGGTA
1 TTTTGGTAATTTTACAAAGTCAAGGGTATTTCAGTAATTTTGTAAACCAGTGGTA
* * ** *
73471300 TTTCT-ATAATTTTTAGAAAGTCAAGGGTATTTTTGTAATTTTGTAAACCAGGGGTA
1 TTT-TGGTAA-TTTTACAAAGTCAAGGGTATTTCAGTAATTTTGTAAACCAGTGGTA
** ***
73471356 TTTTGGTAATTTTACAAA-TTGAGGGTATTTCAGTAATTTCACAAACCAGTGGTA
1 TTTTGGTAATTTTACAAAGTCAAGGGTATTTCAGTAATTTTGTAAACCAGTGGTA
73471410 TTTTGGTAATTTTACAAA
1 TTTTGGTAATTTTACAAA
73471428 CTAGGGGTAT
Statistics
Matches: 105, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
54 52 0.50
55 16 0.15
56 37 0.35
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (55 bp):
TTTTGGTAATTTTACAAAGTCAAGGGTATTTCAGTAATTTTGTAAACCAGTGGTA
Found at i:73471436 original size:54 final size:54
Alignment explanation
Indices: 73471211--73471439 Score: 167
Period size: 54 Copynumber: 4.2 Consensus size: 54
73471201 TTTTACCTAT
* * ** * * * *
73471211 TAGGGGTATTTTAGTCATTTCATCCTACAAG-GGTGTTTTGGTAAATCTACAAAC
1 TAGGGGTATTTCAGTAATTTCA-CAAACCAGTGGTATTTTGGTAATTTTACAAAC
* * *** * * * *
73471265 CAAGGGTATTTCAGTAATTTTGTAAACCAATGGTATTTCT-ATAATTTTTAGAAAG
1 TAGGGGTATTTCAGTAATTTCACAAACCAGTGGTATTT-TGGTAA-TTTTACAAAC
* ** *** *
73471320 TCAAGGGTATTTTTGTAATTTTGTAAACCAGGGGTATTTTGGTAATTTTACAAA-
1 T-AGGGGTATTTCAGTAATTTCACAAACCAGTGGTATTTTGGTAATTTTACAAAC
*
73471374 TTGAGGGTATTTCAGTAATTTCACAAACCAGTGGTATTTTGGTAATTTTACAAAC
1 TAG-GGGTATTTCAGTAATTTCACAAACCAGTGGTATTTTGGTAATTTTACAAAC
73471429 TAGGGGTATTT
1 TAGGGGTATTT
73471440 TGGTAATTCT
Statistics
Matches: 135, Mismatches: 33, Indels: 14
0.74 0.18 0.08
Matches are distributed among these distances:
53 3 0.02
54 78 0.58
55 18 0.13
56 36 0.27
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (54 bp):
TAGGGGTATTTCAGTAATTTCACAAACCAGTGGTATTTTGGTAATTTTACAAAC
Found at i:73471441 original size:81 final size:80
Alignment explanation
Indices: 73471325--73471480 Score: 208
Period size: 81 Copynumber: 1.9 Consensus size: 80
73471315 GAAAGTCAAG
* ** * *
73471325 GGTATTTTTGTAATTTTGTAAACCAGGGGTATTTTGGTAATTTTA-CAAATTG-AGGGTATTTCA
1 GGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTCTATC---CTGAAGGGTATTTCA
73471388 GTAATTTCACAAACCAGT
63 GTAATTTCACAAACCAGT
*
73471406 GGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTCTATCCTGCAAGGGTATTTCAGT
1 GGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTCTATCCTG-AAGGGTATTTCAGT
73471471 AATTTCACAA
65 AATTTCACAA
73471481 TCGAGGGTAA
Statistics
Matches: 66, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
79 2 0.03
81 63 0.95
82 1 0.02
ACGTcount: A:0.29, C:0.11, G:0.20, T:0.40
Consensus pattern (80 bp):
GGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTCTATCCTGAAGGGTATTTCAGTA
ATTTCACAAACCAGT
Found at i:73471516 original size:27 final size:27
Alignment explanation
Indices: 73471479--73471570 Score: 132
Period size: 27 Copynumber: 3.4 Consensus size: 27
73471469 GTAATTTCAC
*
73471479 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTATA
*
73471506 AA-CTGAGGGTAAAATGGTAATTTTATA
1 AATC-GAGGGTAAAACGGTAATTTTATA
* *
73471533 AATCGAGGGTAAAACGATAATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTATA
73471560 AATCGAGGGTA
1 AATCGAGGGTA
73471571 CTTTGGTAAT
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
26 1 0.02
27 56 0.97
28 1 0.02
ACGTcount: A:0.40, C:0.08, G:0.24, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTTTATA
Found at i:73471554 original size:54 final size:54
Alignment explanation
Indices: 73471469--73471595 Score: 150
Period size: 54 Copynumber: 2.4 Consensus size: 54
73471459 GGGTATTTCA
* * * *
73471469 GTAATTTCAC-AATCGAGGGTAAAACGGTAATTTTGTAAA-CTGAGGGTAAAATG
1 GTAATTTTACAAATCGAGGGTAAAACGATAATTCTATAAATC-GAGGGTAAAATG
* ***
73471522 GTAATTTTATAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTACTTTG
1 GTAATTTTACAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAATG
*
73471576 GTAATTTTACAAGTCGAGGG
1 GTAATTTTACAAATCGAGGG
73471596 CATTTCAATA
Statistics
Matches: 62, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
53 8 0.13
54 53 0.85
55 1 0.02
ACGTcount: A:0.36, C:0.09, G:0.24, T:0.31
Consensus pattern (54 bp):
GTAATTTTACAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAATG
Found at i:73471580 original size:27 final size:27
Alignment explanation
Indices: 73471479--73471595 Score: 128
Period size: 27 Copynumber: 4.3 Consensus size: 27
73471469 GTAATTTCAC
* *
73471479 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTATA
73471506 AA-CTGAGGGTAAAATGGTAATTTTATA
1 AATC-GAGGGTAAAATGGTAATTTTATA
* * *
73471533 AATCGAGGGTAAAACGATAATTCTATA
1 AATCGAGGGTAAAATGGTAATTTTATA
*** *
73471560 AATCGAGGGTACTTTGGTAATTTTACA
1 AATCGAGGGTAAAATGGTAATTTTATA
*
73471587 AGTCGAGGG
1 AATCGAGGG
73471596 CATTTCAATA
Statistics
Matches: 75, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
26 1 0.01
27 73 0.97
28 1 0.01
ACGTcount: A:0.37, C:0.09, G:0.25, T:0.30
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTTTATA
Found at i:73484661 original size:13 final size:13
Alignment explanation
Indices: 73484643--73484670 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
73484633 ACATATTATA
73484643 AATATTTTGTGTT
1 AATATTTTGTGTT
73484656 AATATTTTGTGTT
1 AATATTTTGTGTT
73484669 AA
1 AA
73484671 AAATAATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.14, T:0.57
Consensus pattern (13 bp):
AATATTTTGTGTT
Found at i:73486112 original size:40 final size:39
Alignment explanation
Indices: 73486052--73486254 Score: 298
Period size: 40 Copynumber: 5.1 Consensus size: 39
73486042 CGGATGATAA
* *
73486052 CCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACTGTAT
1 CCGGGCTAAG-TCCGAAGGCATTTGTGCTAGTTACTATAT
*
73486092 CCGGGCTAAGTCCTGAAGGCATTTGTGCTAGTTACTATAA
1 CCGGGCTAAGTCC-GAAGGCATTTGTGCTAGTTACTATAT
*
73486132 CCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACTATAT
1 CCGGGCTAAG-TCCGAAGGCATTTGTGCTAGTTACTATAT
73486172 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
1 CCGGGCTAAGT-CCGAAGGCATTTGTGCTAGTTACTATAT
* * *
73486212 TCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGT-CCGAAGGCATTTGTGCTAGTTACTATAT
73486252 CCG
1 CCG
73486255 ACTAAATCCC
Statistics
Matches: 150, Mismatches: 10, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
39 4 0.03
40 143 0.95
41 3 0.02
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.30
Consensus pattern (39 bp):
CCGGGCTAAGTCCGAAGGCATTTGTGCTAGTTACTATAT
Found at i:73486181 original size:80 final size:80
Alignment explanation
Indices: 73486048--73486269 Score: 340
Period size: 80 Copynumber: 2.8 Consensus size: 80
73486038 TATTCGGATG
* *
73486048 ATAACCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACTGTATCCGGGCTAAGTCCTGAAGGCA
1 ATAACCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
73486113 TTTGTGCTAGTTACT
66 TTTGTGCTAGTTACT
73486128 ATAACCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
73486193 TTTGTGCTAGTTACT
66 TTTGTGCTAGTTACT
** * * * * *
73486208 ATATTCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTGCTATATCC-GACTAAATCCCGAAGG
1 ATAACCGGACTAAGAT-CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTCCCGAAGG
73486270 TACTTGGGTT
Statistics
Matches: 132, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
79 15 0.11
80 117 0.89
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (80 bp):
ATAACCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
TTTGTGCTAGTTACT
Found at i:73489578 original size:19 final size:19
Alignment explanation
Indices: 73489554--73489591 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
73489544 ACATAAAAAT
73489554 TAAAGTTTCTAACTCTTCC
1 TAAAGTTTCTAACTCTTCC
*
73489573 TAAAGTTTTTAACTCTTCC
1 TAAAGTTTCTAACTCTTCC
73489592 ATCACTGAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.26, C:0.24, G:0.05, T:0.45
Consensus pattern (19 bp):
TAAAGTTTCTAACTCTTCC
Found at i:73496204 original size:48 final size:48
Alignment explanation
Indices: 73496133--73496231 Score: 198
Period size: 48 Copynumber: 2.1 Consensus size: 48
73496123 CGTGGGCAAG
73496133 TAAGAAATTCAAATGAACCTTGACTATATACTTAAGGTTAAGGGTTCC
1 TAAGAAATTCAAATGAACCTTGACTATATACTTAAGGTTAAGGGTTCC
73496181 TAAGAAATTCAAATGAACCTTGACTATATACTTAAGGTTAAGGGTTCC
1 TAAGAAATTCAAATGAACCTTGACTATATACTTAAGGTTAAGGGTTCC
73496229 TAA
1 TAA
73496232 ACTCAACCTT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 51 1.00
ACGTcount: A:0.38, C:0.14, G:0.16, T:0.31
Consensus pattern (48 bp):
TAAGAAATTCAAATGAACCTTGACTATATACTTAAGGTTAAGGGTTCC
Found at i:73498454 original size:39 final size:39
Alignment explanation
Indices: 73498387--73498644 Score: 295
Period size: 39 Copynumber: 6.6 Consensus size: 39
73498377 ATAATGGAGA
* *
73498387 ATTAAATCCGGGTTAAGTCCCGAAGGAATTCGTGCTGGT
1 ATTATATCCGGGCTAAGTCCCGAAGGAATTCGTGCTGGT
*
73498426 ATTATATCCAGGCTAAGTCCCGAAGGAATTCGTGCTGGT
1 ATTATATCCGGGCTAAGTCCCGAAGGAATTCGTGCTGGT
* * * *
73498465 ATTATATTCGAGCTAAGTCCCGAAGGAATTTGTACTGGT
1 ATTATATCCGGGCTAAGTCCCGAAGGAATTCGTGCTGGT
* * * * *
73498504 ATTATATCCGAGCTAAGTCTCGACGGCATTTGTG-TCGGT
1 ATTATATCCGGGCTAAGTCCCGAAGGAATTCGTGCT-GGT
* * * *
73498543 GTTATATCTGGGCTAAGTACCGAAGGCATTCGTGCTGGT
1 ATTATATCCGGGCTAAGTCCCGAAGGAATTCGTGCTGGT
* * *
73498582 ATTATATCCGGGCTAAAGTCCCGCAGG-CTTTGTGCTGGT
1 ATTATATCCGGGCT-AAGTCCCGAAGGAATTCGTGCTGGT
73498621 ATTATATCCGGGCTTAAAGTCCCG
1 ATTATATCCGGGC-T-AAGTCCCG
73498645 CATGCTTTTT
Statistics
Matches: 189, Mismatches: 26, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
38 1 0.01
39 167 0.88
40 21 0.11
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.31
Consensus pattern (39 bp):
ATTATATCCGGGCTAAGTCCCGAAGGAATTCGTGCTGGT
Found at i:73501516 original size:18 final size:18
Alignment explanation
Indices: 73501493--73501528 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
73501483 GTAGATTTTA
*
73501493 GTATGTTGCATTTTGTTT
1 GTATGTTGCATTCTGTTT
73501511 GTATGTTGCATTCTGTTT
1 GTATGTTGCATTCTGTTT
73501529 ATACTTTCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.11, C:0.08, G:0.22, T:0.58
Consensus pattern (18 bp):
GTATGTTGCATTCTGTTT
Found at i:73503214 original size:79 final size:79
Alignment explanation
Indices: 73503119--73503275 Score: 314
Period size: 79 Copynumber: 2.0 Consensus size: 79
73503109 TATGTTTTAA
73503119 GTAAGTTTCTTTAGTTTTACTTACATCCAATAAAATGTGCACATTGAGTCTTTTATTGACCTTAA
1 GTAAGTTTCTTTAGTTTTACTTACATCCAATAAAATGTGCACATTGAGTCTTTTATTGACCTTAA
73503184 GGGCTGAATAAGGT
66 GGGCTGAATAAGGT
73503198 GTAAGTTTCTTTAGTTTTACTTACATCCAATAAAATGTGCACATTGAGTCTTTTATTGACCTTAA
1 GTAAGTTTCTTTAGTTTTACTTACATCCAATAAAATGTGCACATTGAGTCTTTTATTGACCTTAA
73503263 GGGCTGAATAAGG
66 GGGCTGAATAAGG
73503276 CCAAAAAGAG
Statistics
Matches: 78, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
79 78 1.00
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39
Consensus pattern (79 bp):
GTAAGTTTCTTTAGTTTTACTTACATCCAATAAAATGTGCACATTGAGTCTTTTATTGACCTTAA
GGGCTGAATAAGGT
Found at i:73503298 original size:79 final size:78
Alignment explanation
Indices: 73503136--73503298 Score: 204
Period size: 79 Copynumber: 2.1 Consensus size: 78
73503126 TCTTTAGTTT
***
73503136 TACTTACATCCAATAAAATGTGCACATTGAGTCTTTTATTGACCTTAAGGGCTGAATAAGGTGTA
1 TACTTACATCCAATAAAATGTGCACATTGAGTCTTTTATTGACCTTAAGGGCTGAATAAGGAAAA
*** * *
73503201 AGTTTCTTTAGTTT
66 AGGAGC-TTAGATG
73503215 TACTTACATCCAATAAAATGTGCACATTGAGTCTTTTATTGACCTTAAGGGCTGAATAAGGCCAA
1 TACTTACATCCAATAAAATGTGCACATTGAGTCTTTTATTGACCTTAAGGGCTGAATAAGG--AA
73503280 AAAGAGAGC-TA-ATG
64 AAAG-GAGCTTAGATG
73503294 TACTT
1 TACTT
73503299 TGTGAGTGTA
Statistics
Matches: 73, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
79 67 0.92
80 2 0.03
81 3 0.04
82 1 0.01
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.34
Consensus pattern (78 bp):
TACTTACATCCAATAAAATGTGCACATTGAGTCTTTTATTGACCTTAAGGGCTGAATAAGGAAAA
AGGAGCTTAGATG
Found at i:73503635 original size:12 final size:12
Alignment explanation
Indices: 73503607--73503636 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
73503597 CCATACATGC
*
73503607 CCGTATACTAGG
1 CCGTGTACTAGG
73503619 CCGTGTACTAGG
1 CCGTGTACTAGG
73503631 CCGTGT
1 CCGTGT
73503637 CAAATCTGTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.17, C:0.27, G:0.30, T:0.27
Consensus pattern (12 bp):
CCGTGTACTAGG
Found at i:73506122 original size:42 final size:43
Alignment explanation
Indices: 73506039--73506182 Score: 139
Period size: 43 Copynumber: 3.3 Consensus size: 43
73506029 TCCAAGACGT
* *
73506039 GGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACAG
1 GGTCTTACATGAAATCAAATATCGATGCCAATGTCCCAGACAG
* * * *
73506082 GGTCTTACATGAAATCATATA-CTATGCCAATGTCTCAGACAT
1 GGTCTTACATGAAATCAAATATCGATGCCAATGTCCCAGACAG
* * * * *
73506124 GGTCTTACACGTAAATCTCAA-ATCGTTGCCAACGTCCCAGACAT
1 GGTCTTACATG-AAATC-AAATATCGATGCCAATGTCCCAGACAG
* *
73506168 GGTGTTACACGAAAT
1 GGTCTTACATGAAAT
73506183 TTCATATCAA
Statistics
Matches: 84, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
42 27 0.32
43 29 0.35
44 28 0.33
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.27
Consensus pattern (43 bp):
GGTCTTACATGAAATCAAATATCGATGCCAATGTCCCAGACAG
Found at i:73506165 original size:44 final size:43
Alignment explanation
Indices: 73506021--73506182 Score: 127
Period size: 43 Copynumber: 3.8 Consensus size: 43
73506011 GCTCATACAA
* * * * * * *
73506021 TGCCAACATCCAAGACGTGGTCTTACATGTAATC-AAATATCGA
1 TGCCAACGTCCCAGACATGGTCTTACACGAAATCTCAA-ATCGT
* * *
73506064 TGCC-ACTGTCCCAGACAGGGTCTTACATGAAA--TCATATAC-T
1 TGCCAAC-GTCCCAGACATGGTCTTACACGAAATCTCAAAT-CGT
* *
73506105 ATGCCAATGTCTCAGACATGGTCTTACACGTAAATCTCAAATCGT
1 -TGCCAACGTCCCAGACATGGTCTTACACG-AAATCTCAAATCGT
*
73506150 TGCCAACGTCCCAGACATGGTGTTACACGAAAT
1 TGCCAACGTCCCAGACATGGTCTTACACGAAAT
73506183 TTCATATCAA
Statistics
Matches: 94, Mismatches: 16, Indels: 18
0.73 0.12 0.14
Matches are distributed among these distances:
41 2 0.02
42 27 0.29
43 32 0.34
44 27 0.29
45 6 0.06
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.26
Consensus pattern (43 bp):
TGCCAACGTCCCAGACATGGTCTTACACGAAATCTCAAATCGT
Found at i:73506299 original size:25 final size:25
Alignment explanation
Indices: 73506271--73506320 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
73506261 ATTGATTCAT
73506271 GCTCGTAATAAATCATTCCATGCTA
1 GCTCGTAATAAATCATTCCATGCTA
73506296 GCTCGTAATAAATCATTCCATGCTA
1 GCTCGTAATAAATCATTCCATGCTA
73506321 TATTCAATTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.32, C:0.24, G:0.12, T:0.32
Consensus pattern (25 bp):
GCTCGTAATAAATCATTCCATGCTA
Found at i:73522741 original size:13 final size:13
Alignment explanation
Indices: 73522723--73522747 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
73522713 ACAAACAATA
73522723 AAATTTTCACACG
1 AAATTTTCACACG
73522736 AAATTTTCACAC
1 AAATTTTCACAC
73522748 ATATCACATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:73523067 original size:72 final size:72
Alignment explanation
Indices: 73522950--73523091 Score: 230
Period size: 72 Copynumber: 2.0 Consensus size: 72
73522940 GTGAGGTCAG
* * * *
73522950 AAGATAAGTAATTCTTGCTTACTTGTTATGTTATTCGAAGATCCTATTAGGGTAGCGACTAGTTG
1 AAGATAAGTAATTCTTGCTTACTCGTTATGCTAGTCGAAGATCCTACTAGGGTAGCGACTAGTTG
73523015 ATTGACA
66 ATTGACA
* *
73523022 AAGATAAGTAATTCTTGTTTACTCGTTATGCTAGTGGAAGATCCTACTAGGGTAGCGACTAGTTG
1 AAGATAAGTAATTCTTGCTTACTCGTTATGCTAGTCGAAGATCCTACTAGGGTAGCGACTAGTTG
73523087 ATTGA
66 ATTGA
73523092 TGAAGAACTT
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
72 64 1.00
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.36
Consensus pattern (72 bp):
AAGATAAGTAATTCTTGCTTACTCGTTATGCTAGTCGAAGATCCTACTAGGGTAGCGACTAGTTG
ATTGACA
Found at i:73532027 original size:17 final size:17
Alignment explanation
Indices: 73532007--73532041 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
73531997 GCACGATGAG
73532007 AATGTATATTGATTATC
1 AATGTATATTGATTATC
73532024 AATGTATATTGATTATC
1 AATGTATATTGATTATC
73532041 A
1 A
73532042 TCAGTTGAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.37, C:0.06, G:0.11, T:0.46
Consensus pattern (17 bp):
AATGTATATTGATTATC
Found at i:73533795 original size:43 final size:43
Alignment explanation
Indices: 73533729--73533890 Score: 154
Period size: 43 Copynumber: 3.8 Consensus size: 43
73533719 CTAGGAATTA
* *
73533729 AGCAATCTGAGCTCGTTGAGTGGTCCAAGTTCATGATATGTATG-
1 AGCATTCTGAGCTCGTTGAGTGGTCCAAGTTCATGAGA--TATGC
* * *
73533773 AG-ATTCTGAACTTGTTGAGTGGTCCAAGTTCGTGAGATATGC
1 AGCATTCTGAGCTCGTTGAGTGGTCCAAGTTCATGAGATATGC
* * *
73533815 AGCATTC-GAGCTCGTTGAGTGGTCCGAGTTCATTATG-GATGC
1 AGCATTCTGAGCTCGTTGAGTGGTCCAAGTTCATGA-GATATGC
* * *
73533857 GAGCA-CCTAAGCTCGTTGAGTGGTCCGAGTTCAT
1 -AGCATTCTGAGCTCGTTGAGTGGTCCAAGTTCAT
73533891 TGTGGATGCG
Statistics
Matches: 100, Mismatches: 13, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
41 4 0.04
42 30 0.30
43 64 0.64
44 2 0.02
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.31
Consensus pattern (43 bp):
AGCATTCTGAGCTCGTTGAGTGGTCCAAGTTCATGAGATATGC
Found at i:73535567 original size:46 final size:46
Alignment explanation
Indices: 73535500--73535625 Score: 207
Period size: 46 Copynumber: 2.7 Consensus size: 46
73535490 AACCCGCCCC
* * * *
73535500 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
73535546 TAAGTGAACTCGAACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
73535592 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
73535626 TGCTCAACCA
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
46 74 1.00
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:73535644 original size:46 final size:46
Alignment explanation
Indices: 73535502--73535644 Score: 134
Period size: 46 Copynumber: 3.1 Consensus size: 46
73535492 CCCGCCCCTA
* * *
73535502 AGTGAACTCGGACTCAACTCAACGAGCTCGG--GCGT-TTGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-TCATCCATCC-T
* * * *
73535547 AAGTGAACTCGAACTCAACTCAACGAGTTCGGACATTCGCATCCAT--A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCATCCATCCT
*
73535594 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCATCCATCCT
73535640 AGTGA
1 AGTGA
73535645 CATGTCACTT
Statistics
Matches: 78, Mismatches: 12, Indels: 14
0.75 0.12 0.13
Matches are distributed among these distances:
44 9 0.12
46 64 0.82
50 5 0.06
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCATCCATCCT
Found at i:73536080 original size:30 final size:30
Alignment explanation
Indices: 73536046--73536105 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
73536036 ATTTAATACG
73536046 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
73536076 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
73536106 GGCTCAGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:73542690 original size:21 final size:21
Alignment explanation
Indices: 73542664--73542709 Score: 92
Period size: 21 Copynumber: 2.2 Consensus size: 21
73542654 GGCATTCTAA
73542664 GAAATACGTGATTGAATGAAT
1 GAAATACGTGATTGAATGAAT
73542685 GAAATACGTGATTGAATGAAT
1 GAAATACGTGATTGAATGAAT
73542706 GAAA
1 GAAA
73542710 AACCGATTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.46, C:0.04, G:0.24, T:0.26
Consensus pattern (21 bp):
GAAATACGTGATTGAATGAAT
Found at i:73544595 original size:21 final size:23
Alignment explanation
Indices: 73544557--73544601 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
73544547 GTTAAGTTTA
*
73544557 TTAATTTTTAATATAA-TTAATT
1 TTAATTTTTAATACAATTTAATT
*
73544579 TTAA-TTTTAATCCAATTTAATT
1 TTAATTTTTAATACAATTTAATT
73544601 T
1 T
73544602 AGGTTAAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 9 0.45
22 11 0.55
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (23 bp):
TTAATTTTTAATACAATTTAATT
Found at i:73547276 original size:13 final size:13
Alignment explanation
Indices: 73547260--73547284 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
73547250 GCAAAAATTG
73547260 AGGAAGAAAAGAA
1 AGGAAGAAAAGAA
73547273 AGGAAGAAAAGA
1 AGGAAGAAAAGA
73547285 GAAAGAAACA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (13 bp):
AGGAAGAAAAGAA
Found at i:73550350 original size:32 final size:34
Alignment explanation
Indices: 73550294--73550359 Score: 84
Period size: 32 Copynumber: 2.0 Consensus size: 34
73550284 CACGAGTTAC
* *
73550294 AGCCATCAGTAGTGGTAATTTGATC-G-ACACAA
1 AGCCATCAGTAGTGATAATATGATCAGCACACAA
73550326 AGCCATCAGTAGCT-ATAATATGATCAGCACACAA
1 AGCCATCAGTAG-TGATAATATGATCAGCACACAA
73550360 CCATGGGTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
32 21 0.72
33 2 0.07
34 6 0.21
ACGTcount: A:0.38, C:0.21, G:0.18, T:0.23
Consensus pattern (34 bp):
AGCCATCAGTAGTGATAATATGATCAGCACACAA
Found at i:73550885 original size:27 final size:27
Alignment explanation
Indices: 73550855--73550922 Score: 82
Period size: 27 Copynumber: 2.5 Consensus size: 27
73550845 TCATTTTTCC
73550855 CTACAGGGGTATTTCAAAAATTTTACA
1 CTACAGGGGTATTTCAAAAATTTTACA
* ****
73550882 CTACAAGGGTATTTTGGTAATTTTACA
1 CTACAGGGGTATTTCAAAAATTTTACA
*
73550909 GTACAGGGGTATTT
1 CTACAGGGGTATTT
73550923 TACTAATTTT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.31, C:0.12, G:0.21, T:0.37
Consensus pattern (27 bp):
CTACAGGGGTATTTCAAAAATTTTACA
Found at i:73550914 original size:54 final size:53
Alignment explanation
Indices: 73550856--73550987 Score: 156
Period size: 54 Copynumber: 2.5 Consensus size: 53
73550846 CATTTTTCCC
* ** *
73550856 TACAGGGGTATTTCAAAAATTTTACACTACAAGGGTATTTTGGTAATTTTACA
1 TACAGGGGTATTTCAATAATTTTACAAAACAAGGGTATGTTGGTAATTTTACA
* * **
73550909 GTACAGGGGTATTTTACTAATTTTACAAAACGGGGGTATGTTGGTAATTTTACA
1 -TACAGGGGTATTTCAATAATTTTACAAAACAAGGGTATGTTGGTAATTTTACA
* *
73550963 AATCAGGGGTATTTCGATAATTTTA
1 TA-CAGGGGTATTTCAATAATTTTA
73550988 TAAATTAGGG
Statistics
Matches: 65, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
53 1 0.02
54 64 0.98
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.38
Consensus pattern (53 bp):
TACAGGGGTATTTCAATAATTTTACAAAACAAGGGTATGTTGGTAATTTTACA
Found at i:73550923 original size:27 final size:26
Alignment explanation
Indices: 73550873--73550987 Score: 113
Period size: 27 Copynumber: 4.3 Consensus size: 26
73550863 GTATTTCAAA
* *
73550873 AATTTTACACTACAAGGGTATTTTGGT
1 AATTTTACA-AACAGGGGTATTTTGGT
* **
73550900 AATTTTACAGTACAGGGGTATTTTACT
1 AATTTTACA-AACAGGGGTATTTTGGT
* *
73550927 AATTTTACAAAACGGGGGTATGTTGGT
1 AATTTTAC-AAACAGGGGTATTTTGGT
* *
73550954 AATTTTACAAATCAGGGGTATTTCGAT
1 AATTTTACAAA-CAGGGGTATTTTGGT
73550981 AATTTTA
1 AATTTTA
73550988 TAAATTAGGG
Statistics
Matches: 73, Mismatches: 13, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
26 3 0.04
27 69 0.95
28 1 0.01
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (26 bp):
AATTTTACAAACAGGGGTATTTTGGT
Found at i:73560577 original size:27 final size:27
Alignment explanation
Indices: 73560559--73560662 Score: 154
Period size: 27 Copynumber: 3.9 Consensus size: 27
73560549 TTTTCCCTAT
*
73560559 AGGGGTATTTCGGTAATTTTGCACTAC
1 AGGGGTATTTCGGTAATTTTACACTAC
* ** *
73560586 AAGGGTATTTTAGTAATTTTACACTAT
1 AGGGGTATTTCGGTAATTTTACACTAC
*
73560613 AGGGGTATTTCGATAATTTTACACTAC
1 AGGGGTATTTCGGTAATTTTACACTAC
73560640 AGGGGTATTTCGGTAATTTTACA
1 AGGGGTATTTCGGTAATTTTACA
73560663 AACTAAGGTC
Statistics
Matches: 66, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 66 1.00
ACGTcount: A:0.28, C:0.12, G:0.21, T:0.39
Consensus pattern (27 bp):
AGGGGTATTTCGGTAATTTTACACTAC
Found at i:73560589 original size:54 final size:54
Alignment explanation
Indices: 73560530--73560640 Score: 141
Period size: 54 Copynumber: 2.1 Consensus size: 54
73560520 TCATTTACTC
* * * * *
73560530 ACAAGGGCAAAATAGTCATTTTTCCCTATAGGGGTATTTCGGTAATTTTGCACT
1 ACAAGGGCAAAATAGTAATTTTACACTATAGGGGTATTTCGATAATTTTACACT
* ***
73560584 ACAAGGGTATTTTAGTAATTTTACACTATAGGGGTATTTCGATAATTTTACACT
1 ACAAGGGCAAAATAGTAATTTTACACTATAGGGGTATTTCGATAATTTTACACT
73560638 ACA
1 ACA
73560641 GGGGTATTTC
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 48 1.00
ACGTcount: A:0.31, C:0.14, G:0.18, T:0.37
Consensus pattern (54 bp):
ACAAGGGCAAAATAGTAATTTTACACTATAGGGGTATTTCGATAATTTTACACT
Found at i:73560646 original size:54 final size:54
Alignment explanation
Indices: 73560555--73560662 Score: 171
Period size: 54 Copynumber: 2.0 Consensus size: 54
73560545 TCATTTTTCC
* * *
73560555 CTATAGGGGTATTTCGGTAATTTTGCACTACAAGGGTATTTTAGTAATTTTACA
1 CTATAGGGGTATTTCGATAATTTTACACTACAAGGGTATTTCAGTAATTTTACA
* *
73560609 CTATAGGGGTATTTCGATAATTTTACACTACAGGGGTATTTCGGTAATTTTACA
1 CTATAGGGGTATTTCGATAATTTTACACTACAAGGGTATTTCAGTAATTTTACA
73560663 AACTAAGGTC
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 49 1.00
ACGTcount: A:0.28, C:0.12, G:0.20, T:0.40
Consensus pattern (54 bp):
CTATAGGGGTATTTCGATAATTTTACACTACAAGGGTATTTCAGTAATTTTACA
Found at i:73564836 original size:48 final size:48
Alignment explanation
Indices: 73564707--73564879 Score: 186
Period size: 48 Copynumber: 3.6 Consensus size: 48
73564697 ATTCATGAGA
* ** * * *
73564707 GCCAGTGTAAGACCATATCTGGGACATGGCATCAGTGTGGATATGAGA
1 GCCAGTGTAAGACCATATCTGGGACATGGCATCGGCATCGATATGTGT
* ** *
73564755 GCCAGTGTAAGACCATGTCCAGGACATGGCATCGGCATTGATATGTGT
1 GCCAGTGTAAGACCATATCTGGGACATGGCATCGGCATCGATATGTGT
* * *
73564803 GCCAGTGTAAGACCATATCTGGGATATGGCATCGGCCTCGGTATGTGAT
1 GCCAGTGTAAGACCATATCTGGGACATGGCATCGGCATCGATATGTG-T
** *
73564852 TTCA-TGTAAGACCATATCTGGGATATGG
1 GCCAGTGTAAGACCATATCTGGGACATGG
73564880 TGTTGATATG
Statistics
Matches: 106, Mismatches: 18, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
48 103 0.97
49 3 0.03
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.26
Consensus pattern (48 bp):
GCCAGTGTAAGACCATATCTGGGACATGGCATCGGCATCGATATGTGT
Found at i:73567874 original size:40 final size:41
Alignment explanation
Indices: 73567809--73568001 Score: 164
Period size: 40 Copynumber: 4.8 Consensus size: 41
73567799 CATGAGCAAT
* *
73567809 TGAATGATATCCGGGCTAAGTCCCGAAGACATTTATGCTAG
1 TGAATGATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG
* * *
73567850 T-AATGATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAG
1 TGAATGATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG
* * ** *
73567890 TGACT-ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAG
1 TGAATGATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG
* * * * *
73567930 TTG--TTAAATCCGGGCTAATACCCGAAGGCATTTGTGCAAG
1 -TGAATGATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG
** *
73567970 TTG--TTCTATCCGGGCTAAAACCCGAAGGCATT
1 -TGAATGATATCCGGGCTAAGACCCGAAGGCATT
73568002 CGTGCATGTG
Statistics
Matches: 132, Mismatches: 17, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
39 1 0.01
40 126 0.95
41 5 0.04
ACGTcount: A:0.28, C:0.22, G:0.25, T:0.25
Consensus pattern (41 bp):
TGAATGATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG
Found at i:73567953 original size:80 final size:80
Alignment explanation
Indices: 73567857--73568022 Score: 219
Period size: 80 Copynumber: 2.1 Consensus size: 80
73567847 TAGTAATGAT
* * *
73567857 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TG-ACTACATCCGGGCTAAGACCCGAAGGCA
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGTACT--ATCCGGGCTAAAACCCGAAGGCA
*
73567920 TTCGTGCAAGTTGTTAA
64 TTCGTGCAAGTGGTTAA
* * *
73567937 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTCTATCCGGGCTAAAACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGTACTATCCGGGCTAAAACCCGAAGGCATT
* *
73568002 CGTGCATGTGGTTAT
66 CGTGCAAGTGGTTAA
73568017 ATCCGG
1 ATCCGG
73568023 TTGTATTCCG
Statistics
Matches: 75, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
80 71 0.95
81 2 0.03
82 2 0.03
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGTACTATCCGGGCTAAAACCCGAAGGCATT
CGTGCAAGTGGTTAA
Found at i:73568007 original size:40 final size:40
Alignment explanation
Indices: 73567855--73568022 Score: 196
Period size: 40 Copynumber: 4.2 Consensus size: 40
73567845 GCTAGTAATG
* * * *
73567855 ATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAG-TGACT
1 ATATCCGGGCTAAAACCCGAAGGC-ATTCGTGCAAGTTG-TT
* *
73567895 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAAACCCGAAGGCATTCGTGCAAGTTGTT
* * *
73567935 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTT
1 ATATCCGGGCTAAAACCCGAAGGCATTCGTGCAAGTTGTT
* * *
73567975 CTATCCGGGCTAAAACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAAACCCGAAGGCATTCGTGCAAGTTGTT
73568015 ATATCCGG
1 ATATCCGG
73568023 TTGTATTCCG
Statistics
Matches: 112, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
39 3 0.03
40 107 0.96
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAAACCCGAAGGCATTCGTGCAAGTTGTT
Found at i:73569836 original size:28 final size:28
Alignment explanation
Indices: 73569795--73569852 Score: 82
Period size: 28 Copynumber: 2.1 Consensus size: 28
73569785 AATTTCACAT
*
73569795 ACCTGTATTCGGCCTATTAAGCCCAGTC
1 ACCTGTATTCGGCCCATTAAGCCCAGTC
*
73569823 ACCTGTATAT-GGCCCATTAGGCCCAGTC
1 ACCTGTAT-TCGGCCCATTAAGCCCAGTC
73569851 AC
1 AC
73569853 ATTCATATTC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
28 26 0.96
29 1 0.04
ACGTcount: A:0.22, C:0.33, G:0.19, T:0.26
Consensus pattern (28 bp):
ACCTGTATTCGGCCCATTAAGCCCAGTC
Found at i:73571368 original size:16 final size:17
Alignment explanation
Indices: 73571336--73571371 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
73571326 TGAAACCAAG
*
73571336 TTTAGGATTTCAGGATT
1 TTTAGGATTTCAAGATT
73571353 TTTAGG-TTTCAAGATT
1 TTTAGGATTTCAAGATT
73571369 TTT
1 TTT
73571372 GGGGTGTTAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 12 0.67
17 6 0.33
ACGTcount: A:0.22, C:0.06, G:0.19, T:0.53
Consensus pattern (17 bp):
TTTAGGATTTCAAGATT
Found at i:73572048 original size:30 final size:30
Alignment explanation
Indices: 73571985--73572053 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
73571975 CACACGAGTA
* * *
73571985 GACACATGGGCATGTGTCTAGGCCACATGT
1 GACACACGGGCATGTATCTAGGCCACATAT
***
73572015 GACACACGGGCATGTATCTAGGCCGTGTAT
1 GACACACGGGCATGTATCTAGGCCACATAT
73572045 GACACACGG
1 GACACACGG
73572054 CCAGCCCCAT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.25, C:0.25, G:0.30, T:0.20
Consensus pattern (30 bp):
GACACACGGGCATGTATCTAGGCCACATAT
Found at i:73573128 original size:6 final size:6
Alignment explanation
Indices: 73573098--73573234 Score: 84
Period size: 6 Copynumber: 22.3 Consensus size: 6
73573088 AAGAAACATT
* * *
73573098 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * * * *
73573147 ATCAGA ATCAGA ATCAGA ATCAAA ATTAG- GTGACAGA ATTAGA ATCAAA
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA
* * *
73573196 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATTAGA AT
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
73573235 ATGAATGCAA
Statistics
Matches: 99, Mismatches: 21, Indels: 22
0.70 0.15 0.15
Matches are distributed among these distances:
5 5 0.05
6 82 0.83
7 9 0.09
8 3 0.03
ACGTcount: A:0.50, C:0.13, G:0.18, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:73573160 original size:37 final size:37
Alignment explanation
Indices: 73573107--73573234 Score: 166
Period size: 37 Copynumber: 3.5 Consensus size: 37
73573097 TATCAGAACT
*
73573107 AGAATCAAAATGAGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAAAATCAGAATCAGAATCAGAATCAGGTGAC
* * *
73573144 AGAATCAGAATCAGAATCAGAATCAAAATTAGGTGAC
1 AGAATCAAAATCAGAATCAGAATCAGAATCAGGTGAC
* * * * *
73573181 AGAATTAGAATCAAAATCAGAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGAATCAGAATCAGGTGAC
*
73573218 AGAATCAAAATTAGAAT
1 AGAATCAAAATCAGAAT
73573235 ATGAATGCAA
Statistics
Matches: 77, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 77 1.00
ACGTcount: A:0.50, C:0.12, G:0.18, T:0.20
Consensus pattern (37 bp):
AGAATCAAAATCAGAATCAGAATCAGAATCAGGTGAC
Done.