Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 234 of 318
Found at i:73573401 original size:27 final size:26
Alignment explanation
Indices: 73573353--73573412 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
73573343 GCGAGGCTGC
*
73573353 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * * *
73573380 CAGATATTGTGGCTAGGCCACCAGAG
1 CAGATATTGTGACGAAGCCACCAGAA
73573406 CAGATAT
1 CAGATAT
73573413 ATATATGTGG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:73573769 original size:27 final size:27
Alignment explanation
Indices: 73573739--73574039 Score: 352
Period size: 27 Copynumber: 11.2 Consensus size: 27
73573729 AACACCCTAG
* * *
73573739 GGGTAAAATGGTAATTTTATAAATCGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
* *
73573766 GGGTAAAACGATAATTCTATAAATCGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
*
73573793 GGGTAAAACAGTAATTCTGTAAATCGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
* * * *
73573820 GGGTAAAATGGTAATTTTATAAATTGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
**
73573847 GGGTAAAATAGTAATTCTGT-AATCGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
* *
73573873 GGGTAAAATGATAATTCTGTAAATCGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
* * *
73573900 AGGTAAAACGGTAATTTTATAAATCGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
* * **
73573927 GGGTAAAATGGTAATTTTGTAAATTAA
1 GGGTAAAACGGTAATTCTGTAAATCGA
*
73573954 GGGTAAAACAGTAATTCTGTAAATCGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
* *
73573981 GGGTAAAACGATAATTCTGTAAATCAA
1 GGGTAAAACGGTAATTCTGTAAATCGA
* * *
73574008 GGGTAAAACGCTAATTCTATAAATTGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
73574035 GGGTA
1 GGGTA
73574040 CTTTGGTAAT
Statistics
Matches: 234, Mismatches: 39, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
26 23 0.10
27 211 0.90
ACGTcount: A:0.41, C:0.07, G:0.22, T:0.30
Consensus pattern (27 bp):
GGGTAAAACGGTAATTCTGTAAATCGA
Found at i:73573851 original size:81 final size:81
Alignment explanation
Indices: 73573739--73574039 Score: 392
Period size: 81 Copynumber: 3.7 Consensus size: 81
73573729 AACACCCTAG
*
73573739 GGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACAG
1 GGGTAAAACGGTAATTTTATAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACAG
73573804 TAATTCTGTAAATCGA
66 TAATTCTGTAAATCGA
* * * * *
73573820 GGGTAAAATGGTAATTTTATAAATTGAGGGTAAAA-TAGTAATTCTGT-AATCGAGGGTAAAA-T
1 GGGTAAAACGGTAATTTTATAAATCGAGGGTAAAACGA-TAATTCTATAAATCGAGGGTAAAACA
73573882 GATAATTCTGTAAATCGA
65 G-TAATTCTGTAAATCGA
* * * * * **
73573900 AGGTAAAACGGTAATTTTATAAATCGAGGGTAAAATGGTAATTTTGTAAATTAAGGGTAAAACAG
1 GGGTAAAACGGTAATTTTATAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACAG
73573965 TAATTCTGTAAATCGA
66 TAATTCTGTAAATCGA
* * * * * *
73573981 GGGTAAAACGATAATTCTGTAAATCAAGGGTAAAACGCTAATTCTATAAATTGAGGGTA
1 GGGTAAAACGGTAATTTTATAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTA
73574040 CTTTGGTAAT
Statistics
Matches: 192, Mismatches: 23, Indels: 10
0.85 0.10 0.04
Matches are distributed among these distances:
79 1 0.01
80 71 0.37
81 119 0.62
82 1 0.01
ACGTcount: A:0.41, C:0.07, G:0.22, T:0.30
Consensus pattern (81 bp):
GGGTAAAACGGTAATTTTATAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACAG
TAATTCTGTAAATCGA
Found at i:73574139 original size:27 final size:27
Alignment explanation
Indices: 73574036--73574213 Score: 132
Period size: 27 Copynumber: 6.6 Consensus size: 27
73574026 ATAAATTGAG
* *
73574036 GGTACTTTGGTAATTTTTACAAGTC-GAA
1 GGTATTTTGGTAA-TTTTACAAATCAG-A
*** **
73574064 GGTATTTCAATAATTTTACAGGTCA-A
1 GGTATTTTGGTAATTTTACAAATCAGA
** *
73574090 GGGTATTTCAGTAATTTCACAAATCAGA
1 -GGTATTTTGGTAATTTTACAAATCAGA
*
73574118 GGTATTTTGGTAATTTTACAAA-CTAGG
1 GGTATTTTGGTAATTTTACAAATC-AGA
*
73574145 GGTATTTTGGTAATTTTACAAA-CTAGG
1 GGTATTTTGGTAATTTTACAAATC-AGA
* * *
73574172 GGTACTTTGGTAATTTTATAAACCA-A
1 GGTATTTTGGTAATTTTACAAATCAGA
73574198 GGGTATTTTGGTAATT
1 -GGTATTTTGGTAATT
73574214 CTACCCTACA
Statistics
Matches: 127, Mismatches: 17, Indels: 13
0.81 0.11 0.08
Matches are distributed among these distances:
26 2 0.02
27 114 0.90
28 11 0.09
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
GGTATTTTGGTAATTTTACAAATCAGA
Found at i:73574206 original size:54 final size:54
Alignment explanation
Indices: 73574087--73574213 Score: 166
Period size: 54 Copynumber: 2.4 Consensus size: 54
73574077 TTTTACAGGT
** *
73574087 CAAGGGTATTTCAGTAATTTCACAAATCAGAGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTCACAAATCAGAGGTACTTTGGTAATTTTACAAAC
* * * * *
73574141 TAGGGGTATTTTGGTAATTTTACAAA-CTAGGGGTACTTTGGTAATTTTATAAAC
1 CAAGGGTATTTTGGTAATTTCACAAATC-AGAGGTACTTTGGTAATTTTACAAAC
73574195 CAAGGGTATTTTGGTAATT
1 CAAGGGTATTTTGGTAATT
73574214 CTACCCTACA
Statistics
Matches: 62, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
53 1 0.02
54 61 0.98
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.39
Consensus pattern (54 bp):
CAAGGGTATTTTGGTAATTTCACAAATCAGAGGTACTTTGGTAATTTTACAAAC
Found at i:73574232 original size:27 final size:27
Alignment explanation
Indices: 73574208--73574278 Score: 106
Period size: 27 Copynumber: 2.6 Consensus size: 27
73574198 GGGTATTTTG
73574208 GTAATTCTACCCTACAGGGGCATTTCA
1 GTAATTCTACCCTACAGGGGCATTTCA
* *
73574235 GTAATTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGCATTTCA
* *
73574262 GTAATGCTAGCCTACAG
1 GTAATTCTACCCTACAG
73574279 ATATGAGATT
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGCATTTCA
Found at i:73574991 original size:15 final size:15
Alignment explanation
Indices: 73574971--73575009 Score: 78
Period size: 15 Copynumber: 2.6 Consensus size: 15
73574961 CCCATGCTTA
73574971 AGGCCCAAAACTTCT
1 AGGCCCAAAACTTCT
73574986 AGGCCCAAAACTTCT
1 AGGCCCAAAACTTCT
73575001 AGGCCCAAA
1 AGGCCCAAA
73575010 TTCAGGGTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.36, C:0.33, G:0.15, T:0.15
Consensus pattern (15 bp):
AGGCCCAAAACTTCT
Found at i:73577490 original size:18 final size:18
Alignment explanation
Indices: 73577467--73577501 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
73577457 CAAGAATAAG
*
73577467 AAGCATCAAAATGGTTTC
1 AAGCATCAAAATAGTTTC
*
73577485 AAGCATGAAAATAGTTT
1 AAGCATCAAAATAGTTT
73577502 GGCAAATCAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.43, C:0.11, G:0.17, T:0.29
Consensus pattern (18 bp):
AAGCATCAAAATAGTTTC
Found at i:73581093 original size:9 final size:9
Alignment explanation
Indices: 73581079--73581137 Score: 84
Period size: 9 Copynumber: 6.6 Consensus size: 9
73581069 ATAAGTACAA
73581079 AATTAACCG
1 AATTAACCG
73581088 AATTAACCG
1 AATTAACCG
73581097 AATT-ACCTG
1 AATTAACC-G
* *
73581106 AATTACCCA
1 AATTAACCG
73581115 AATTAACCG
1 AATTAACCG
73581124 AATTAACCG
1 AATTAACCG
73581133 AATTA
1 AATTA
73581138 TTTGTATAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
8 3 0.07
9 39 0.89
10 2 0.05
ACGTcount: A:0.44, C:0.22, G:0.08, T:0.25
Consensus pattern (9 bp):
AATTAACCG
Found at i:73582152 original size:2 final size:2
Alignment explanation
Indices: 73582145--73582181 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
73582135 AGTCATGCAC
73582145 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
73582182 TACAAATCAG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:73582606 original size:2 final size:2
Alignment explanation
Indices: 73582599--73582633 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
73582589 CTAATTTACT
73582599 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
73582634 CAAATAGATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:73583709 original size:2 final size:2
Alignment explanation
Indices: 73583702--73583753 Score: 63
Period size: 2 Copynumber: 26.5 Consensus size: 2
73583692 AGATCCAATC
73583702 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T A- AGT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT
* *
73583743 AA AC AT AT AT A
1 AT AT AT AT AT A
73583754 ATCATTTTGA
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
1 2 0.05
2 41 0.93
3 1 0.02
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (2 bp):
AT
Found at i:73597849 original size:29 final size:29
Alignment explanation
Indices: 73597815--73597889 Score: 80
Period size: 29 Copynumber: 2.6 Consensus size: 29
73597805 TACTCGATTT
*
73597815 CGCACACTTAGTGCCATGCGATTTAG-GCC
1 CGCACACTTAGTGCCATGC-ACTTAGAGCC
** * * *
73597844 CGCACACACAGTGCCATGCCCTTCGAGCT
1 CGCACACTTAGTGCCATGCACTTAGAGCC
73597873 CGCACACTTAGTGCCAT
1 CGCACACTTAGTGCCAT
73597890 ATATTTCCAG
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
28 3 0.08
29 34 0.92
ACGTcount: A:0.21, C:0.36, G:0.21, T:0.21
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTAGAGCC
Found at i:73597906 original size:29 final size:29
Alignment explanation
Indices: 73597873--73597946 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
73597863 CCTTCGAGCT
73597873 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
73597902 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
73597931 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
73597947 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:73600870 original size:40 final size:40
Alignment explanation
Indices: 73600705--73600871 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
73600695 AAATTGAATG
* * * **
73600705 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-GAGTGATT
* * * **
73600744 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
* * *
73600784 ATATCCGGGCTAAGGCCCGAAGGCATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
*
73600824 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGATT
*
73600864 AAATCCGG
1 ATATCCGG
73600872 TTATATTCCG
Statistics
Matches: 103, Mismatches: 22, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
39 14 0.14
40 89 0.86
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
Found at i:73608777 original size:40 final size:40
Alignment explanation
Indices: 73608711--73608877 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
73608701 AAATTGAATG
* * *
73608711 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
73608750 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
73608790 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
73608830 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
73608870 ATATCCGG
1 ATATCCGG
73608878 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:73612407 original size:57 final size:58
Alignment explanation
Indices: 73612288--73612429 Score: 182
Period size: 57 Copynumber: 2.5 Consensus size: 58
73612278 CACTACAGAA
* * *
73612288 AGGATTTAGCCTAGACTGGTAATCCTGATATAAGCCCTCTTGAGCATATGTTAAAGAT
1 AGGATTTAGCCTGGACAGGTAATCCTGATATAAGCCCTCTTGAGCATATGTTAAAGAC
* *
73612346 AGGATTTAGCCTGGACAGGTAATCCTGAT-TAAGCTCT-TATGAGCATATGTTGGAA-AC
1 AGGATTTAGCCTGGACAGGTAATCCTGATATAAGCCCTCT-TGAGCATATGTT-AAAGAC
* *
73612403 AGGATTTAGCTTGGACAAGTAATCCTG
1 AGGATTTAGCCTGGACAGGTAATCCTG
73612430 TTATTTGATA
Statistics
Matches: 75, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
56 1 0.01
57 45 0.60
58 29 0.39
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.30
Consensus pattern (58 bp):
AGGATTTAGCCTGGACAGGTAATCCTGATATAAGCCCTCTTGAGCATATGTTAAAGAC
Found at i:73613289 original size:22 final size:22
Alignment explanation
Indices: 73613264--73613307 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
73613254 CACAACTTAG
*
73613264 TACATGGGCATGTTGTTAGGCC
1 TACATGGGCATGTTATTAGGCC
**
73613286 TACATGGGTGTGTTATTAGGCC
1 TACATGGGCATGTTATTAGGCC
73613308 GTGTGTCCTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.18, C:0.16, G:0.32, T:0.34
Consensus pattern (22 bp):
TACATGGGCATGTTATTAGGCC
Found at i:73614645 original size:18 final size:19
Alignment explanation
Indices: 73614622--73614660 Score: 55
Period size: 18 Copynumber: 2.1 Consensus size: 19
73614612 AAGGATTAAG
73614622 AATATTCTG-TTTTTGA-AA
1 AATATT-TGATTTTTGATAA
73614640 AATATTTGATTTTTGATAA
1 AATATTTGATTTTTGATAA
73614659 AA
1 AA
73614661 AAATCAATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 2 0.11
18 13 0.68
19 4 0.21
ACGTcount: A:0.38, C:0.03, G:0.10, T:0.49
Consensus pattern (19 bp):
AATATTTGATTTTTGATAA
Found at i:73615317 original size:18 final size:18
Alignment explanation
Indices: 73615294--73615333 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
73615284 GGATTAAAGT
73615294 TGAACATTAATGATGAGA
1 TGAACATTAATGATGAGA
*
73615312 TGAACATTAATGGTGAGA
1 TGAACATTAATGATGAGA
73615330 TGAA
1 TGAA
73615334 TTTTATTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.42, C:0.05, G:0.25, T:0.28
Consensus pattern (18 bp):
TGAACATTAATGATGAGA
Found at i:73616756 original size:45 final size:48
Alignment explanation
Indices: 73616589--73616948 Score: 216
Period size: 47 Copynumber: 7.6 Consensus size: 48
73616579 TGTGCGCTAG
* * * *
73616589 TGTAAGA-CATGTCTGGGACAT-GCATCGGCCAC-ATTATG-AGAGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCCTCGA-GATGTA-AGCCAA
* * * * * *
73616635 TGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGACG-AGAGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGTA-AGCCAA
* *
73616683 TGTAACA-CATGTCTGGGATAT-GCATCGGCCTCGAGATGTAAGCCAA
1 TGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGTAAGCCAA
* * * *
73616729 TGTAAGA-CATCTCT-GGACAT-GCATCGG-CTATGAGATGT--GTCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCCT-CGAGATGTAAGCCAA
* *
73616772 TGTAAGACCATGTCTGGGACATGGCATCGACGC-GGAGATGTGAGAGCCAA
1 TGTAAGACCATGTCTGGGACATGGCATCGGC-CTCGAGATGT-A-AGCCAA
* * * * * *
73616822 TGTAAGACCATGTCTAGGACATGGCATCGGCCGCTA-TTTTGATAGTCAA
1 TGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGT-A-AGCCAA
* *** *
73616871 TGTAAGACCATGTCTGGGACATGTCAT-TTACTTGATGGATG--AGCCAA
1 TGTAAGACCATGTCTGGGACATGGCATCGGCCTCGA--GATGTAAGCCAA
* *
73616918 TGTAAGACCATGTCTAGGACGTGGCATCGGC
1 TGTAAGACCATGTCTGGGACATGGCATCGGC
73616949 ATTACACCTA
Statistics
Matches: 245, Mismatches: 50, Indels: 36
0.74 0.15 0.11
Matches are distributed among these distances:
43 10 0.04
44 8 0.03
45 25 0.10
46 49 0.20
47 57 0.23
48 26 0.11
49 36 0.15
50 33 0.13
51 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGTAAGCCAA
Found at i:73616888 original size:99 final size:96
Alignment explanation
Indices: 73616767--73616948 Score: 258
Period size: 96 Copynumber: 1.9 Consensus size: 96
73616757 TATGAGATGT
*
73616767 GTCAGTGTAAGACCATGTCTGGGACATGGCATCGACGCGGAGATGTGA-GAGCCAATGTAAGACC
1 GTCAATGTAAGACCATGTCTGGGACATGGCATCGA--C-GAGATG-GATGAGCCAATGTAAGACC
73616831 ATGTCTAGGACATGGCATCGGCCGCTATTTTGATA
62 ATGTCTAGGACATGGCATCGGCCGCTATTTTGATA
* ** **
73616866 GTCAATGTAAGACCATGTCTGGGACATGTCATTTACTTGATGGATGAGCCAATGTAAGACCATGT
1 GTCAATGTAAGACCATGTCTGGGACATGGCATCGACGAGATGGATGAGCCAATGTAAGACCATGT
*
73616931 CTAGGACGTGGCATCGGC
66 CTAGGACATGGCATCGGC
73616949 ATTACACCTA
Statistics
Matches: 75, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
95 2 0.03
96 41 0.55
97 1 0.01
99 31 0.41
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.25
Consensus pattern (96 bp):
GTCAATGTAAGACCATGTCTGGGACATGGCATCGACGAGATGGATGAGCCAATGTAAGACCATGT
CTAGGACATGGCATCGGCCGCTATTTTGATA
Found at i:73616891 original size:49 final size:50
Alignment explanation
Indices: 73616767--73616893 Score: 159
Period size: 49 Copynumber: 2.6 Consensus size: 50
73616757 TATGAGATGT
*
73616767 GTCAGTGTAAGACCATGTCTGGGACATGGCATCGACGCGGAGATGTGAGA
1 GTCAATGTAAGACCATGTCTGGGACATGGCATCGACGCGGAGATGTGAGA
* * * * * * *
73616817 GCCAATGTAAGACCATGTCTAGGACATGGCATCGGC-CGCTA-TTTTGATA
1 GTCAATGTAAGACCATGTCTGGGACATGGCATCGACGCG-GAGATGTGAGA
73616866 GTCAATGTAAGACCATGTCTGGGACATG
1 GTCAATGTAAGACCATGTCTGGGACATG
73616894 TCATTTACTT
Statistics
Matches: 66, Mismatches: 10, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
49 33 0.50
50 33 0.50
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.24
Consensus pattern (50 bp):
GTCAATGTAAGACCATGTCTGGGACATGGCATCGACGCGGAGATGTGAGA
Found at i:73623601 original size:13 final size:13
Alignment explanation
Indices: 73623583--73623607 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
73623573 AGTAAGTGAT
73623583 TTTGATGATTTTC
1 TTTGATGATTTTC
73623596 TTTGATGATTTT
1 TTTGATGATTTT
73623608 TGCACTTTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.04, G:0.16, T:0.64
Consensus pattern (13 bp):
TTTGATGATTTTC
Found at i:73624423 original size:47 final size:45
Alignment explanation
Indices: 73624313--73624437 Score: 130
Period size: 47 Copynumber: 2.7 Consensus size: 45
73624303 TCATTCGTGC
*
73624313 GCTAGTGTAAGACATGTTTGGGACAT-GCATCGGCCACATTATGAGA
1 GCTAGTGTAAGACATGTTTGGGACATGGCATCGG-C-CATTACGAGA
* * * *
73624359 GCCAGTGGAAGACCATGTCTGGGACATGGCATTGG-CATTGAGACGAGA
1 GCTAGTGTAAGA-CATGTTTGGGACATGGCATCGGCCATT---ACGAGA
73624407 GCTAGTGTAAGACATGTTTGGGACAT-GCATC
1 GCTAGTGTAAGACATGTTTGGGACATGGCATC
73624438 AGCCTCGAGA
Statistics
Matches: 65, Mismatches: 9, Indels: 10
0.77 0.11 0.12
Matches are distributed among these distances:
45 4 0.06
46 14 0.22
47 26 0.40
48 21 0.32
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.24
Consensus pattern (45 bp):
GCTAGTGTAAGACATGTTTGGGACATGGCATCGGCCATTACGAGA
Found at i:73624666 original size:47 final size:47
Alignment explanation
Indices: 73624551--73624666 Score: 148
Period size: 48 Copynumber: 2.4 Consensus size: 47
73624541 GTGAGAGCCT
*
73624551 GTGTAAGACCATGTTTGGGACATGGCATCAGCCTCTATTTCGATGTCA
1 GTGTAAGACCATGTTTGGGACATGGCATCAGACTCTA-TTCGATGTCA
*
73624599 GTGTAAGACCATGTTTGGGACATGGCATCA-ACT-TGA-TGGATGATCCA
1 GTGTAAGACCATGTTTGGGACATGGCATCAGACTCT-ATTCGATG-T-CA
*
73624646 GTGTAAGACCATGTCTGGGAC
1 GTGTAAGACCATGTTTGGGAC
73624667 GTAGCATCGG
Statistics
Matches: 62, Mismatches: 3, Indels: 7
0.86 0.04 0.10
Matches are distributed among these distances:
45 5 0.08
46 2 0.03
47 25 0.40
48 30 0.48
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (47 bp):
GTGTAAGACCATGTTTGGGACATGGCATCAGACTCTATTCGATGTCA
Found at i:73635328 original size:28 final size:28
Alignment explanation
Indices: 73635296--73635394 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
73635286 GCAATAAGCC
*
73635296 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
73635324 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
73635352 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
73635381 CGCACACTTAGTGC
1 CGCACACTTAGTGC
73635395 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:73643022 original size:28 final size:28
Alignment explanation
Indices: 73642990--73643088 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
73642980 GCAATAAGCC
*
73642990 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
73643018 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
73643046 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
73643075 CGCACACTTAGTGC
1 CGCACACTTAGTGC
73643089 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:73644565 original size:45 final size:45
Alignment explanation
Indices: 73644401--73644567 Score: 264
Period size: 45 Copynumber: 3.7 Consensus size: 45
73644391 GGGCTGTCAC
*
73644401 ATAGCCTGCTAGGCTCAAAGGCCCGAATACTATCTCA-TCGGCATT
1 ATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACT-GGCATT
* *
73644446 ATAGCCTGCTAGGCTCAAAGGCCCGAATAATATCTCACCGGCATT
1 ATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACTGGCATT
* *
73644491 ATAGCCTGCTAGGCTCAAAGGCCCAAATAGTATCTCACTAGCATT
1 ATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACTGGCATT
*
73644536 ATAGCCTACTAGGCTCAAAGGCCCGAATAGTA
1 ATAGCCTGCTAGGCTCAAAGGCCCGAATAGTA
73644568 CTTTACAATA
Statistics
Matches: 113, Mismatches: 8, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
45 113 1.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.23
Consensus pattern (45 bp):
ATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACTGGCATT
Found at i:73645825 original size:34 final size:35
Alignment explanation
Indices: 73645758--73645987 Score: 214
Period size: 35 Copynumber: 6.7 Consensus size: 35
73645748 TTCTTTATTG
73645758 AAATACCATACCTACATTTCACAACTCGGTATGGA
1 AAATACCATACCTACATTTCACAACTCGGTATGGA
* * **
73645793 AAACACCATACCTAAATTTCA-TGCTCGGTATGGA
1 AAATACCATACCTACATTTCACAACTCGGTATGGA
* * * *
73645827 AAATACCATACCTATATGTCATAACTCAGTATGGA
1 AAATACCATACCTACATTTCACAACTCGGTATGGA
** * * ** * * * **
73645862 CGATGCCATATCTATGTATCATAGCTCACTATGGA
1 AAATACCATACCTACATTTCACAACTCGGTATGGA
** ** *
73645897 CGACGCCATACCTACGTTTCACAACTCGGTATGG-
1 AAATACCATACCTACATTTCACAACTCGGTATGGA
*
73645931 AAATACCATACCTACATTTCACAGCTCGGTATGG-
1 AAATACCATACCTACATTTCACAACTCGGTATGGA
73645965 AAATACCATACCTACATTTCACA
1 AAATACCATACCTACATTTCACA
73645988 CTTTGCCATG
Statistics
Matches: 162, Mismatches: 32, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
34 80 0.49
35 82 0.51
ACGTcount: A:0.34, C:0.26, G:0.13, T:0.27
Consensus pattern (35 bp):
AAATACCATACCTACATTTCACAACTCGGTATGGA
Found at i:73646007 original size:34 final size:34
Alignment explanation
Indices: 73645757--73645987 Score: 124
Period size: 34 Copynumber: 6.7 Consensus size: 34
73645747 TTTCTTTATT
* **
73645757 GAAATACCATACCTACATTTCACAACTCGGTATG
1 GAAATACCATACCTACATTTCACAGCTCGCCATG
* * * **
73645791 GAAAACACCATACCTAAATTTCA-TGCTCGGTATG
1 G-AAATACCATACCTACATTTCACAGCTCGCCATG
* * * * *
73645825 GAAAATACCATACCTATATGTCATAACTCAG-TATG
1 G-AAATACCATACCTACATTTCACAGCTC-GCCATG
* * * ** * * * *
73645860 GACGATGCCATATCTATGTATCATAGCTCACTATG
1 GA-AATACCATACCTACATTTCACAGCTCGCCATG
* ** * * **
73645895 GACGACGCCATACCTACGTTTCACAACTCGGTATG
1 GA-AATACCATACCTACATTTCACAGCTCGCCATG
**
73645930 GAAATACCATACCTACATTTCACAGCTCGGTATG
1 GAAATACCATACCTACATTTCACAGCTCGCCATG
73645964 GAAATACCATACCTACATTTCACA
1 GAAATACCATACCTACATTTCACA
73645988 CTTTGCCATG
Statistics
Matches: 163, Mismatches: 29, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
34 82 0.50
35 80 0.49
36 1 0.01
ACGTcount: A:0.34, C:0.26, G:0.14, T:0.27
Consensus pattern (34 bp):
GAAATACCATACCTACATTTCACAGCTCGCCATG
Found at i:73646135 original size:44 final size:44
Alignment explanation
Indices: 73646087--73646197 Score: 168
Period size: 44 Copynumber: 2.5 Consensus size: 44
73646077 TCATATTTAT
* *
73646087 CACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTGTCACTGATCAGATAACTGTAGCTAAAGCTAC
* *
73646131 CACTTATCACTTGTCACAGATCAGATAACTGTGGCTAAAGCTAC
1 CACTTATCACTTGTCACTGATCAGATAACTGTAGCTAAAGCTAC
* *
73646175 CACTTATCACTTATCACTTATCA
1 CACTTATCACTTGTCACTGATCA
73646198 CTTGTCACTT
Statistics
Matches: 60, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 60 1.00
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.31
Consensus pattern (44 bp):
CACTTATCACTTGTCACTGATCAGATAACTGTAGCTAAAGCTAC
Found at i:73646187 original size:7 final size:7
Alignment explanation
Indices: 73646175--73646207 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
73646165 CTAAAGCTAC
73646175 CACTTAT
1 CACTTAT
73646182 CACTTAT
1 CACTTAT
73646189 CACTTAT
1 CACTTAT
*
73646196 CACTTGT
1 CACTTAT
73646203 CACTT
1 CACTT
73646208 TGCCATGTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.24, C:0.30, G:0.03, T:0.42
Consensus pattern (7 bp):
CACTTAT
Found at i:73646237 original size:27 final size:27
Alignment explanation
Indices: 73646202--73646295 Score: 134
Period size: 27 Copynumber: 3.5 Consensus size: 27
73646192 TTATCACTTG
* *
73646202 TCACTTTGCCATGTCTAGCACACTTTA
1 TCACTTTGCCATGTTTGGCACACTTTA
* *
73646229 TCACCTTGCCATCTTTGGCACACTTTA
1 TCACTTTGCCATGTTTGGCACACTTTA
* *
73646256 TCACTTTTCCATATTTGGCACACTTTA
1 TCACTTTGCCATGTTTGGCACACTTTA
73646283 TCACTTTGCCATG
1 TCACTTTGCCATG
73646296 ATATAATCCT
Statistics
Matches: 58, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 58 1.00
ACGTcount: A:0.20, C:0.30, G:0.11, T:0.39
Consensus pattern (27 bp):
TCACTTTGCCATGTTTGGCACACTTTA
Found at i:73648854 original size:27 final size:26
Alignment explanation
Indices: 73648806--73648937 Score: 165
Period size: 27 Copynumber: 4.9 Consensus size: 26
73648796 GCGAGGCTGC
* *
73648806 CAGATATTGTGACAAAGTCACCAGATA
1 CAGATATTGTGGCAAAGCCACCAGA-A
*
73648833 CAGATATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGGCAAAGCCACCAGAA
* *
73648859 CAGATATATGTGGCAGAGCCACCAGAT
1 CAGATAT-TGTGGCAAAGCCACCAGAA
*
73648886 CAGATAATCGTGGCAAAGCCACCAGAA
1 CAGAT-ATTGTGGCAAAGCCACCAGAA
*
73648913 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAAAGCCACCAG
73648938 GACGCTTCCT
Statistics
Matches: 94, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
26 8 0.09
27 84 0.89
28 2 0.02
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGGCAAAGCCACCAGAA
Found at i:73650596 original size:26 final size:26
Alignment explanation
Indices: 73650560--73650667 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
73650550 TGAAATGCCC
* *
73650560 ATCATGGAACATTTACCTAAACAATT
1 ATCATGGAACATTTACCTAACCCATT
73650586 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* **
73650612 ATCATGGAATATTTACCTAATTCATT
1 ATCATGGAACATTTACCTAACCCATT
73650638 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
73650664 ATCA
1 ATCA
73650668 ATTTGTACCA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.37, C:0.22, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:73652599 original size:75 final size:75
Alignment explanation
Indices: 73652473--73652634 Score: 279
Period size: 75 Copynumber: 2.2 Consensus size: 75
73652463 GTGGCTTGGG
* *
73652473 ACACGCCCGTATCCTCAGCCCGTGTAACTCTCTGTTTATGACATCAGCAACGAAATAGGGTCACA
1 ACACGCCCGTGTCCTCAGCCCGTGTAACTCTCTGTTTATGACATCAACAACGAAATAGGGTCACA
73652538 CGGCCAAGTC
66 CGGCCAAGTC
**
73652548 ACACGCCCGTGTCCTCAGCCCGTGTAACTCTCTGTTTATGATGTCAACAACGAAATAGGGTCACA
1 ACACGCCCGTGTCCTCAGCCCGTGTAACTCTCTGTTTATGACATCAACAACGAAATAGGGTCACA
73652613 CGGCCAAGTC
66 CGGCCAAGTC
*
73652623 GCACGCCCGTGT
1 ACACGCCCGTGT
73652635 GCTAGACCGT
Statistics
Matches: 82, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
75 82 1.00
ACGTcount: A:0.25, C:0.32, G:0.22, T:0.22
Consensus pattern (75 bp):
ACACGCCCGTGTCCTCAGCCCGTGTAACTCTCTGTTTATGACATCAACAACGAAATAGGGTCACA
CGGCCAAGTC
Found at i:73654058 original size:16 final size:16
Alignment explanation
Indices: 73654039--73654070 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
73654029 AAAAATACAT
73654039 ATTTATAAATCATAAG
1 ATTTATAAATCATAAG
*
73654055 ATTTATACATCATAAG
1 ATTTATAAATCATAAG
73654071 CATAGACCCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.09, G:0.06, T:0.38
Consensus pattern (16 bp):
ATTTATAAATCATAAG
Found at i:73656468 original size:50 final size:50
Alignment explanation
Indices: 73656398--73656645 Score: 295
Period size: 50 Copynumber: 4.9 Consensus size: 50
73656388 ACTGAAGCTC
* * *
73656398 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
* * * *
73656448 TCTGGTACACGTAGTGGCCTGCACTTAGTACTACACACATGACCTAACCA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
* *
73656498 TC-GGATACACATAGTAG-CTGGCACTTAGTACTACACACGTGA-TTGAAGCTA
1 TCTGG-TACACATAGTAGCCT-GCACTTAGTACTACACACGTGACCT-AA-CAA
* * * *
73656549 TCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
** *
73656599 TCTGGTACATGTAGTAGCCTACACTTAGTACTACACACGTGACCTAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
73656646 AACTGTCTTA
Statistics
Matches: 167, Mismatches: 24, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
49 5 0.03
50 120 0.72
51 37 0.22
52 5 0.03
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.25
Consensus pattern (50 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
Found at i:73656585 original size:101 final size:100
Alignment explanation
Indices: 73656398--73656645 Score: 295
Period size: 101 Copynumber: 2.5 Consensus size: 100
73656388 ACTGAAGCTC
* * * * *
73656398 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACACGTAGT
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCAGGTACACATAGT
* * *
73656463 GGCCTGCACTTAGTACTACACACATGACCTAACCA
66 AGCCTGCACTTAGTACTACACACACGACCTAACAA
* * *
73656498 TC-GGATACACATAGTAG-CTGGCACTTAGTACTACACACGTGA-TTGAAGCTATCAGGTACGCA
1 TCTGG-TACACATAGTAGCCT-GCACTTAGTACTACACACGTGACCT-AA-CAATCAGGTACACA
**
73656560 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAA
62 TAGTAGCCTGCACTTAGTACTACACACACGACCTAACAA
** *
73656599 TCTGGTACATGTAGTAGCCTACACTTAGTACTACACACGTGACCTAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
73656646 AACTGTCTTA
Statistics
Matches: 124, Mismatches: 17, Indels: 13
0.81 0.11 0.08
Matches are distributed among these distances:
99 5 0.04
100 35 0.28
101 79 0.64
102 5 0.04
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.25
Consensus pattern (100 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCAGGTACACATAGT
AGCCTGCACTTAGTACTACACACACGACCTAACAA
Found at i:73658255 original size:48 final size:48
Alignment explanation
Indices: 73658195--73658376 Score: 229
Period size: 48 Copynumber: 3.8 Consensus size: 48
73658185 CAATAACAAT
* * *
73658195 GCCGATGCCATGTTCCAAACATGGCCTTACACTAGCTCGCATATTGAG
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCGCATATTGAG
* ** * *** *
73658243 GCCGATGTCATGTCCCAGGCATGGTCTTACACTGGCTCACATAACAAT
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCGCATATTGAG
* *
73658291 GTCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCGCATATTGAG
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCGCATATTGAG
* *
73658339 GTCGATGCCATGTCCCAAGCATGGTCTTACACTGGCTC
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTC
73658377 AGATAACAAT
Statistics
Matches: 111, Mismatches: 23, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
48 111 1.00
ACGTcount: A:0.23, C:0.29, G:0.22, T:0.26
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCGCATATTGAG
Found at i:73658351 original size:96 final size:95
Alignment explanation
Indices: 73658187--73658424 Score: 352
Period size: 96 Copynumber: 2.5 Consensus size: 95
73658177 GGATGTTACA
* * *
73658187 ATAACAATGCCGATGCCATGTTCCAAACATGGCCTTACACTAGCTCGCATATTGAGGCCGATGTC
1 ATAACAATG-CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCGCATATTGAGGCCGATGCC
*
73658252 ATGTCCCAGGCATGGTCTTACACTGGCTCAC
65 ATGTCCCAAGCATGGTCTTACACTGGCTCAC
*
73658283 ATAACAATGTCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCGCATATTGAGGTCGATGCC
1 ATAACAATG-CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCGCATATTGAGGCCGATGCC
*
73658348 ATGTCCCAAGCATGGTCTTACACTGGCTCAG
65 ATGTCCCAAGCATGGTCTTACACTGGCTCAC
* **
73658379 ATAACAATGCTGATACCACATTCCAAAC-TGAGTCTTACACTGGCTC
1 ATAACAATGC-GATGCCATGTTCCAAACATG-GTCTTACACTGGCTC
73658425 ACACATAACC
Statistics
Matches: 130, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
95 3 0.02
96 127 0.98
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (95 bp):
ATAACAATGCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCGCATATTGAGGCCGATGCCA
TGTCCCAAGCATGGTCTTACACTGGCTCAC
Found at i:73661115 original size:28 final size:27
Alignment explanation
Indices: 73661052--73661121 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
73661042 ATAGTGAGTC
*
73661052 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
73661079 CGCACACTTAGTGCTACATGATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
73661107 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
73661122 GTACAAGTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:73667745 original size:39 final size:40
Alignment explanation
Indices: 73667622--73667787 Score: 162
Period size: 40 Copynumber: 4.2 Consensus size: 40
73667612 AAATTGAATG
* * *
73667622 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTAATT
* * ***
73667661 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTAATT
*
73667701 ATATCCGGGCTAAG-CCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTAATT
* * *
73667740 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GTAATT
73667780 ATATCCGG
1 ATATCCGG
73667788 TTATATTCCG
Statistics
Matches: 104, Mismatches: 17, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
38 3 0.03
39 44 0.42
40 55 0.53
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTAATT
Found at i:73667754 original size:79 final size:79
Alignment explanation
Indices: 73667622--73667771 Score: 205
Period size: 79 Copynumber: 1.9 Consensus size: 79
73667612 AAATTGAATG
*
73667622 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
73667687 TTGTGCTAGTGGCT
66 TTGTGCTAGTGGCT
* * ** *
73667701 ATATCCGGGCTAAGCCCGAAGGC-ATTCGTGC-GAGTTATTCTATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGCCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGC
*
73667764 ATTTGTGC
64 AATTGTGC
73667772 ACGTGATTAT
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
78 4 0.06
79 58 0.94
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (79 bp):
ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCTAGTGGCT
Found at i:73669824 original size:18 final size:18
Alignment explanation
Indices: 73669801--73669838 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
73669791 TCTCCTATGA
73669801 ACCAACTAGTCTTGCCAT
1 ACCAACTAGTCTTGCCAT
73669819 ACCAACTAGTCTTGCCAT
1 ACCAACTAGTCTTGCCAT
73669837 AC
1 AC
73669839 ATAGGTTCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.29, C:0.34, G:0.11, T:0.26
Consensus pattern (18 bp):
ACCAACTAGTCTTGCCAT
Found at i:73670534 original size:40 final size:39
Alignment explanation
Indices: 73670489--73670616 Score: 159
Period size: 40 Copynumber: 3.3 Consensus size: 39
73670479 CGGAATATAA
73670489 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
73670529 CCGGATAGAATCTC-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
* * * *
73670567 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
73670607 CCGGATATAA
1 CCGGATATAA
73670617 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
38 32 0.44
40 40 0.56
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.23
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:73670631 original size:40 final size:40
Alignment explanation
Indices: 73670505--73670653 Score: 162
Period size: 40 Copynumber: 3.8 Consensus size: 40
73670495 ATAACCACGT
* *
73670505 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATCT-C-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* ** * *
73670543 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
73670583 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
73670623 GCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
73670654 CATTCAATTT
Statistics
Matches: 91, Mismatches: 16, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
38 29 0.32
39 17 0.19
40 45 0.49
ACGTcount: A:0.22, C:0.28, G:0.23, T:0.27
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:73678514 original size:40 final size:40
Alignment explanation
Indices: 73678470--73678637 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
73678460 TCGAATATAA
73678470 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* *** * *
73678510 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
73678550 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
73678590 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
73678630 CCGGATAT
1 CCGGATAT
73678638 CATTCAATTT
Statistics
Matches: 102, Mismatches: 25, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 101 0.99
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:73678620 original size:80 final size:80
Alignment explanation
Indices: 73678486--73678635 Score: 205
Period size: 80 Copynumber: 1.9 Consensus size: 80
73678476 ATAACCACGT
* *
73678486 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
73678551 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * * * *
73678566 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGGCTTAG
73678629 CCCGGAT
64 CCCGGAT
73678636 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
79 3 0.05
80 58 0.95
ACGTcount: A:0.21, C:0.27, G:0.25, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:73681630 original size:87 final size:88
Alignment explanation
Indices: 73681483--73681643 Score: 238
Period size: 87 Copynumber: 1.8 Consensus size: 88
73681473 CTTTTTTTTT
*
73681483 TTAAAAAAAGCAATTAAATCCCTCATTTTTTTTATACTCAATTGAGTACTTAAACTTTCAAAATG
1 TTAAAAAAAGCAATTAAACCCCTCATTTTTTTTATACTCAATTGAGTACTTAAACTTTCAAAATG
73681548 CATCAAAAAAGCCCTCAAGCTTC
66 CATCAAAAAAGCCCTCAAGCTTC
* * *
73681571 TTAAAAAAA-CAATTAAGCCCCT-ACTTTTTTTT-TCACTCAATTGGGTACTTGAACTTTCAAAA
1 TTAAAAAAAGCAATTAAACCCCTCA-TTTTTTTTAT-ACTCAATTGAGTACTTAAACTTTCAAAA
*
73681633 TGGATCAAAAA
64 TGCATCAAAAA
73681644 GACCATCAAA
Statistics
Matches: 66, Mismatches: 5, Indels: 5
0.87 0.07 0.07
Matches are distributed among these distances:
86 2 0.03
87 55 0.83
88 9 0.14
ACGTcount: A:0.39, C:0.19, G:0.08, T:0.34
Consensus pattern (88 bp):
TTAAAAAAAGCAATTAAACCCCTCATTTTTTTTATACTCAATTGAGTACTTAAACTTTCAAAATG
CATCAAAAAAGCCCTCAAGCTTC
Found at i:73682704 original size:46 final size:47
Alignment explanation
Indices: 73682605--73682706 Score: 111
Period size: 48 Copynumber: 2.2 Consensus size: 47
73682595 TTTTATAATT
* * *
73682605 TTTTTACAAAATTTATATTTCTTTACATTTTGTATAATTTTTTTATG
1 TTTTTATAAAATTTATATTTCTATACATTTTGTATAATTTTTTTACG
** *
73682652 GCTTTATAAAATTTTATATTTCTATATA-TTT-TATAA-TTTTTTACG
1 TTTTTATAAAA-TTTATATTTCTATACATTTTGTATAATTTTTTTACG
73682697 ATTTTTATAA
1 -TTTTTATAA
73682707 TTTTTAATTT
Statistics
Matches: 45, Mismatches: 8, Indels: 5
0.78 0.14 0.09
Matches are distributed among these distances:
45 8 0.18
46 12 0.27
47 11 0.24
48 14 0.31
ACGTcount: A:0.30, C:0.06, G:0.04, T:0.60
Consensus pattern (47 bp):
TTTTTATAAAATTTATATTTCTATACATTTTGTATAATTTTTTTACG
Found at i:73682741 original size:26 final size:27
Alignment explanation
Indices: 73682700--73682764 Score: 80
Period size: 26 Copynumber: 2.4 Consensus size: 27
73682690 TTTTACGATT
*
73682700 TTTATAAT-TTTTAATTTTTAATAAAA
1 TTTATAATATTTGAATTTTTAATAAAA
**
73682726 TTT-TAATATTTGAATTTTTTTTAAAA
1 TTTATAATATTTGAATTTTTAATAAAA
73682752 TTTAATAATATTT
1 TTT-ATAATATTT
73682765 ATAGCTTTTA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
25 4 0.12
26 21 0.64
28 8 0.24
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (27 bp):
TTTATAATATTTGAATTTTTAATAAAA
Found at i:73685476 original size:6 final size:6
Alignment explanation
Indices: 73685461--73685502 Score: 59
Period size: 6 Copynumber: 7.2 Consensus size: 6
73685451 TTGGTTATTT
* *
73685461 TTTC-A TTTCAA TTTCAA TTTTAA TTTCAA TTTCAA CTTCAA T
1 TTTCAA TTTCAA TTTCAA TTTCAA TTTCAA TTTCAA TTTCAA T
73685503 GTGGATCGAA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
5 4 0.12
6 28 0.88
ACGTcount: A:0.31, C:0.17, G:0.00, T:0.52
Consensus pattern (6 bp):
TTTCAA
Found at i:73685555 original size:14 final size:14
Alignment explanation
Indices: 73685536--73685566 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
73685526 TCAAAACTCT
73685536 AGGGATTGGCAATA
1 AGGGATTGGCAATA
73685550 AGGGATTGGCAATA
1 AGGGATTGGCAATA
73685564 AGG
1 AGG
73685567 TAATTAGTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.35, C:0.06, G:0.39, T:0.19
Consensus pattern (14 bp):
AGGGATTGGCAATA
Found at i:73689906 original size:15 final size:15
Alignment explanation
Indices: 73689882--73689958 Score: 74
Period size: 15 Copynumber: 5.3 Consensus size: 15
73689872 ATCTTGGGTA
73689882 TCTTTA-TCTGGATCT
1 TCTTTATTCTGGAT-T
73689897 T-TTTATTCTGGATT
1 TCTTTATTCTGGATT
*
73689911 TCTTTATTCTGGGTT
1 TCTTTATTCTGGATT
73689926 T-TTCTA-TCTTGGATT
1 TCTT-TATTC-TGGATT
*
73689941 TCTTTATTC-GGTTT
1 TCTTTATTCTGGATT
73689955 TCTT
1 TCTT
73689959 GTTATCTTTA
Statistics
Matches: 53, Mismatches: 3, Indels: 13
0.77 0.04 0.19
Matches are distributed among these distances:
14 18 0.34
15 31 0.58
16 4 0.08
ACGTcount: A:0.10, C:0.14, G:0.14, T:0.61
Consensus pattern (15 bp):
TCTTTATTCTGGATT
Found at i:73689928 original size:29 final size:31
Alignment explanation
Indices: 73689871--73689949 Score: 94
Period size: 30 Copynumber: 2.6 Consensus size: 31
73689861 CATAGTATCG
* *
73689871 TATCTTGGGTATCTTTA-TCTGGATCTTTT-
1 TATCTTGGATTTCTTTATTCTGGATCTTTTC
*
73689900 TAT-TCTGGATTTCTTTATTCTGGGT-TTTTC
1 TATCT-TGGATTTCTTTATTCTGGATCTTTTC
73689930 TATCTTGGATTTCTTTATTC
1 TATCTTGGATTTCTTTATTC
73689950 GGTTTTCTTG
Statistics
Matches: 43, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
28 1 0.02
29 17 0.40
30 24 0.56
31 1 0.02
ACGTcount: A:0.13, C:0.14, G:0.15, T:0.58
Consensus pattern (31 bp):
TATCTTGGATTTCTTTATTCTGGATCTTTTC
Found at i:73693532 original size:38 final size:38
Alignment explanation
Indices: 73693481--73693568 Score: 167
Period size: 38 Copynumber: 2.3 Consensus size: 38
73693471 AAATTCTAGA
73693481 AAAAATTTAGTAGGTAGATATATGAGTCTAGTTTCAGT
1 AAAAATTTAGTAGGTAGATATATGAGTCTAGTTTCAGT
73693519 AAAAATTTAGTAGGTAGATATATGAGTCTAGTTTCAGT
1 AAAAATTTAGTAGGTAGATATATGAGTCTAGTTTCAGT
*
73693557 AAAAATTCAGTA
1 AAAAATTTAGTA
73693569 AAAATTTAGT
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 49 1.00
ACGTcount: A:0.40, C:0.06, G:0.19, T:0.35
Consensus pattern (38 bp):
AAAAATTTAGTAGGTAGATATATGAGTCTAGTTTCAGT
Found at i:73704511 original size:29 final size:30
Alignment explanation
Indices: 73704438--73704570 Score: 123
Period size: 29 Copynumber: 4.6 Consensus size: 30
73704428 ATACTCGATT
* *
73704438 TCGCACACTTAGTGCCATGCGATTT-AAGC-
1 TCGCACACTTAGTGCCATAC-ATTTCCAGCA
* ** * ** *
73704467 CCGCACACACAATGCCATACCCTTCGAGC-
1 TCGCACACTTAGTGCCATACATTTCCAGCA
*
73704496 TCGCACACTTAGTGCCATATATTTCCAGCA
1 TCGCACACTTAGTGCCATACATTTCCAGCA
*
73704526 T-GCACACTTAGTGCCATATATTTCCAGCA
1 TCGCACACTTAGTGCCATACATTTCCAGCA
73704555 T-GCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
73704571 ATCTCGTCAC
Statistics
Matches: 86, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
28 2 0.02
29 83 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (30 bp):
TCGCACACTTAGTGCCATACATTTCCAGCA
Found at i:73709349 original size:11 final size:11
Alignment explanation
Indices: 73709333--73709357 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
73709323 TTATATATAC
73709333 TAATAAAATAA
1 TAATAAAATAA
73709344 TAATAAAATAA
1 TAATAAAATAA
73709355 TAA
1 TAA
73709358 AATATCATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:73709683 original size:30 final size:30
Alignment explanation
Indices: 73709627--73709695 Score: 88
Period size: 31 Copynumber: 2.3 Consensus size: 30
73709617 CACCCTTAAA
*
73709627 ATATTTTCACTATTATCCCTTCAAATTTTTG
1 ATATTTACACTATTATCCCTTCAAA-TTTTG
73709658 ATATTTACACT-TTAATCCC-TCAAATTTTG
1 ATATTTACACTATT-ATCCCTTCAAATTTTG
73709687 AGTATTTAC
1 A-TATTTAC
73709696 TCTTGGGCCA
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
29 6 0.17
30 14 0.40
31 15 0.43
ACGTcount: A:0.29, C:0.19, G:0.04, T:0.48
Consensus pattern (30 bp):
ATATTTACACTATTATCCCTTCAAATTTTG
Found at i:73711206 original size:43 final size:42
Alignment explanation
Indices: 73711107--73711222 Score: 142
Period size: 43 Copynumber: 2.7 Consensus size: 42
73711097 TAAGGTTACT
* *
73711107 GAGATTACGTGTAAGACCATATCTGGGATATGCCATCGATAT
1 GAGAATACGTGTAAGACCATATCTGGGATATGCCATCGATAC
* * * * *
73711149 GAGAATTCGCGTAAGACCATATTTGGGCTATTGGCATCGATAC
1 GAGAATACGTGTAAGACCATATCTGGGATA-TGCCATCGATAC
* *
73711192 GGGAGTACGTGTAAGACCATATCTGGGATAT
1 GAGAATACGTGTAAGACCATATCTGGGATAT
73711223 AACATTGGTA
Statistics
Matches: 60, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
42 26 0.43
43 34 0.57
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.28
Consensus pattern (42 bp):
GAGAATACGTGTAAGACCATATCTGGGATATGCCATCGATAC
Found at i:73715316 original size:25 final size:25
Alignment explanation
Indices: 73715288--73715337 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
73715278 AATAGTTGAA
73715288 GGTGTTATTAACCAAAACACTGACT
1 GGTGTTATTAACCAAAACACTGACT
*
73715313 GGTGTTATTAACCATAACACTGACT
1 GGTGTTATTAACCAAAACACTGACT
73715338 CTGGGTTCTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Consensus pattern (25 bp):
GGTGTTATTAACCAAAACACTGACT
Found at i:73717753 original size:43 final size:42
Alignment explanation
Indices: 73717654--73717770 Score: 164
Period size: 43 Copynumber: 2.8 Consensus size: 42
73717644 TAAGGTTACT
*
73717654 GAGATTACGTGTAAGACCATATCTGGGATATGCCATCGATAT
1 GAGATTACGTGTAAGACCATATCTGGGATATGCCATCGATAC
* * * *
73717696 GAGACTT-CGCGTAAGACCATATTTGGGCTATTGGCATCGATAC
1 GAGA-TTACGTGTAAGACCATATCTGGGATA-TGCCATCGATAC
73717739 GAGATTACGTGTAAGACCATATCTGGGATATG
1 GAGATTACGTGTAAGACCATATCTGGGATATG
73717771 ACATTGGTAT
Statistics
Matches: 64, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
42 28 0.44
43 36 0.56
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.28
Consensus pattern (42 bp):
GAGATTACGTGTAAGACCATATCTGGGATATGCCATCGATAC
Found at i:73719555 original size:11 final size:11
Alignment explanation
Indices: 73719539--73719566 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
73719529 ATTATTTGAA
73719539 ATGGTTTATTT
1 ATGGTTTATTT
73719550 ATGGTTTATTT
1 ATGGTTTATTT
73719561 ATGGTT
1 ATGGTT
73719567 ATATGATATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.18, C:0.00, G:0.21, T:0.61
Consensus pattern (11 bp):
ATGGTTTATTT
Found at i:73721052 original size:40 final size:40
Alignment explanation
Indices: 73721007--73721174 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
73720997 CGGAATATAA
73721007 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
73721047 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
73721087 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
73721127 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
73721167 CCGGATAT
1 CCGGATAT
73721175 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:73726702 original size:49 final size:49
Alignment explanation
Indices: 73726630--73727037 Score: 425
Period size: 49 Copynumber: 8.1 Consensus size: 49
73726620 ACATAATAAT
73726630 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACTGTATAC
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACTGTATAC
*
73726679 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACTGTATAT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACTGTATAC
* *
73726728 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATAC
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACTGTATAC
*
73726777 ATATGTGATAA-GCCTAATGGCCGACGTGATGAATGTGAAACTGTATAC
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACTGTATAC
* * ** * *
73726825 ATATGTGATATA--CATATGTGATAAGGCCTAATG-GCCG-AGGTGATGAA-TGTGAAAC
1 ATATGTGATA-AGGCCTA----AT--GGCC-GATGTGATGAATGTGA--AACTGT-ATAC
* * * * * *
73726880 TGTATACATATG-TGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATAC
1 ---AT--ATGTGAT-A-AGGCCT-AATGGCCGATGTGATGAATGTGAAACTGTATAC
*
73726936 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACTGTATAT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACTGTATAC
* *
73726985 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACTGTATAC
73727034 ATAT
1 ATAT
73727038 ATATGTGGTA
Statistics
Matches: 305, Mismatches: 30, Indels: 48
0.80 0.08 0.13
Matches are distributed among these distances:
48 49 0.16
49 188 0.62
50 3 0.01
51 5 0.02
52 3 0.01
53 7 0.02
54 9 0.03
55 7 0.02
56 7 0.02
57 9 0.03
58 7 0.02
59 3 0.01
60 7 0.02
63 1 0.00
ACGTcount: A:0.34, C:0.11, G:0.26, T:0.29
Consensus pattern (49 bp):
ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACTGTATAC
Found at i:73726742 original size:98 final size:98
Alignment explanation
Indices: 73726628--73727037 Score: 615
Period size: 98 Copynumber: 4.1 Consensus size: 98
73726618 GTACATAATA
73726628 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACTGTATACATATGTGATAAGGC
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACTGTATACATATGTGATAAGGC
*
73726693 CTAATGGCCGATGTGATGAATGTGAAACTGTAT
66 CTAATGGCCGACGTGATGAATGTGAAACTGTAT
* *
73726726 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATACATATGTGATAA-GC
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACTGTATACATATGTGATAAGGC
73726790 CTAATGGCCGACGTGATGAATGTGAAACTGTATACATATGTGAT
66 CTAATGGCCGACGTGATGAATGTG--A----A-AC---TGT-AT
*
73726834 ATACATATGTGATAAGGCCTAATGGCCGAGGTGATGAATGTGAAACTGTATACATATGTGATAAG
1 AT--ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACTGTATACATATGTGATAAG
*
73726899 GCCTAATGGCCGACGTGATGAATGTGAAAATGTAT
64 GCCTAATGGCCGACGTGATGAATGTGAAACTGTAT
* *
73726934 ACATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACTGTATATATATGTGATAAGGC
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACTGTATACATATGTGATAAGGC
* *
73726999 CTAATGGCCGATGTGATGAATGTGAAAGTGTAT
66 CTAATGGCCGACGTGATGAATGTGAAACTGTAT
73727032 ATATAT
1 ATATAT
73727038 ATATGTGGTA
Statistics
Matches: 286, Mismatches: 12, Indels: 28
0.88 0.04 0.09
Matches are distributed among these distances:
97 25 0.09
98 157 0.55
99 1 0.00
100 3 0.01
101 3 0.01
103 1 0.00
104 3 0.01
105 1 0.00
107 3 0.01
108 4 0.01
109 1 0.00
110 58 0.20
111 26 0.09
ACGTcount: A:0.34, C:0.11, G:0.26, T:0.29
Consensus pattern (98 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACTGTATACATATGTGATAAGGC
CTAATGGCCGACGTGATGAATGTGAAACTGTAT
Found at i:73726838 original size:13 final size:13
Alignment explanation
Indices: 73726820--73726847 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
73726810 TGTGAAACTG
73726820 TATACATATGTGA
1 TATACATATGTGA
73726833 TATACATATGTGA
1 TATACATATGTGA
73726846 TA
1 TA
73726848 AGGCCTAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.07, G:0.14, T:0.39
Consensus pattern (13 bp):
TATACATATGTGA
Found at i:73726868 original size:62 final size:61
Alignment explanation
Indices: 73726772--73726945 Score: 237
Period size: 62 Copynumber: 3.0 Consensus size: 61
73726762 TGTGAAAATG
73726772 TATACATATGTGATAAGCCTAATGGCCGACGTGATGAATGTGAAACTGTATACATATGTGA
1 TATACATATGTGATAAGCCTAATGGCCGACGTGATGAATGTGAAACTGTATACATATGTGA
*
73726833 TATACATATGTGATAAGGCCTAATGGCCGAGGTGATGAATGTGAAACTGTATACATATGTG-
1 TATACATATGTGATAA-GCCTAATGGCCGACGTGATGAATGTGAAACTGTATACATATGTGA
*
73726894 -AT--A-A---G----GCCTAATGGCCGACGTGATGAATGTGAAAATGTATACATATGTGA
1 TATACATATGTGATAAGCCTAATGGCCGACGTGATGAATGTGAAACTGTATACATATGTGA
73726944 TA
1 TA
73726946 AGGCCTAATG
Statistics
Matches: 107, Mismatches: 3, Indels: 16
0.85 0.02 0.13
Matches are distributed among these distances:
49 42 0.39
51 1 0.01
54 1 0.01
57 1 0.01
58 1 0.01
60 2 0.02
61 16 0.15
62 43 0.40
ACGTcount: A:0.34, C:0.12, G:0.25, T:0.29
Consensus pattern (61 bp):
TATACATATGTGATAAGCCTAATGGCCGACGTGATGAATGTGAAACTGTATACATATGTGA
Found at i:73726991 original size:208 final size:209
Alignment explanation
Indices: 73726630--73727037 Score: 719
Period size: 208 Copynumber: 2.0 Consensus size: 209
73726620 ACATAATAAT
*
73726630 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACTGTATACATATGTGATAAGGCCT
1 ATATGTGATAAGGCCTAATGGCCGAGGTGATGAATGTGAAACTGTATACATATGTGATAAGGCCT
* * *
73726695 AATGGCCGATGTGATGAATGTGAAACTGTATATATATGTGATAAGGCCTAATGGCCGACGTGATG
66 AATGGCCGACGTGATGAATGTGAAAATGTATACATATGTGATAAGGCCTAATGGCCGACGTGATG
73726760 AATGTGAAAATGTATACATATGTGATAA-GCCTAATGGCCGACGTGATGAATGTGAAACTGTATA
131 AATGTGAAAATGTATACATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAACTGTATA
73726824 CATATGTGATATAC
196 CATATGTGATATAC
73726838 ATATGTGATAAGGCCTAATGGCCGAGGTGATGAATGTGAAACTGTATACATATGTGATAAGGCCT
1 ATATGTGATAAGGCCTAATGGCCGAGGTGATGAATGTGAAACTGTATACATATGTGATAAGGCCT
*
73726903 AATGGCCGACGTGATGAATGTGAAAATGTATACATATGTGATAAGGCCTAATGGCCGATGTGATG
66 AATGGCCGACGTGATGAATGTGAAAATGTATACATATGTGATAAGGCCTAATGGCCGACGTGATG
* * * *
73726968 AATGTGAAACTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
131 AATGTGAAAATGTATACATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAACTGTATA
*
73727033 TATAT
196 CATAT
73727038 ATATGTGGTA
Statistics
Matches: 189, Mismatches: 10, Indels: 1
0.94 0.05 0.00
Matches are distributed among these distances:
208 151 0.80
209 38 0.20
ACGTcount: A:0.34, C:0.11, G:0.26, T:0.29
Consensus pattern (209 bp):
ATATGTGATAAGGCCTAATGGCCGAGGTGATGAATGTGAAACTGTATACATATGTGATAAGGCCT
AATGGCCGACGTGATGAATGTGAAAATGTATACATATGTGATAAGGCCTAATGGCCGACGTGATG
AATGTGAAAATGTATACATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAACTGTATA
CATATGTGATATAC
Found at i:73727163 original size:37 final size:36
Alignment explanation
Indices: 73727108--73727194 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
73727098 AACTTAGAAA
73727108 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGT-AGACCCGATGACTACGTGTGGAGAT
73727146 TATGTCCGGGTACGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTA-GACCCGATGACTACGTGTGGAGAT
73727183 TATGTCCGGGTA
1 TATGTCCGGGTA
73727195 AGACTTCGTA
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 43 0.90
38 4 0.08
ACGTcount: A:0.21, C:0.20, G:0.33, T:0.26
Consensus pattern (36 bp):
TATGTCCGGGTAGACCCGATGACTACGTGTGGAGAT
Found at i:73729076 original size:40 final size:40
Alignment explanation
Indices: 73729021--73729151 Score: 190
Period size: 40 Copynumber: 3.2 Consensus size: 40
73729011 GAGAATTGAG
*
73729021 AGTGATATATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
73729061 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * * * *
73729101 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCAATCATGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
73729141 GGTGACTGTAT
1 AGTGA-TGTAT
73729152 TCGGGCCTTC
Statistics
Matches: 83, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
40 78 0.94
41 5 0.06
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
Found at i:73729969 original size:40 final size:40
Alignment explanation
Indices: 73729875--73730055 Score: 163
Period size: 40 Copynumber: 4.5 Consensus size: 40
73729865 TTCGAATGGT
* ** * *
73729875 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAA
1 ATCCGGGCTAATTCCCGAAGGCAATTGTGC-GAGTCACTAA
* * *
73729916 ATTCGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGCT-AATTCCCGAAGGCAATTGTGCGAGTCACTAA
*
73729956 ATCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATA
1 ATCCGGGCTAATTCCCGAAGGCAATTGTGCGAGTCACTA-A
* * * *
73729997 A-CCGGGCT-ATGTCCCGAAGACAATCGAGCGAGTCACTAT
1 ATCCGGGCTAAT-TCCCGAAGGCAATTGTGCGAGTCACTAA
* *
73730036 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGCTAATTCCCGAAGG
73730056 TACGTGATTC
Statistics
Matches: 117, Mismatches: 17, Indels: 14
0.79 0.11 0.09
Matches are distributed among these distances:
39 14 0.12
40 75 0.64
41 28 0.24
ACGTcount: A:0.27, C:0.24, G:0.25, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAATTCCCGAAGGCAATTGTGCGAGTCACTAA
Found at i:73732953 original size:49 final size:49
Alignment explanation
Indices: 73732881--73733135 Score: 447
Period size: 49 Copynumber: 5.2 Consensus size: 49
73732871 ACATAATAAT
*
73732881 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACTGTATAC
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAACTGTATAC
* *
73732930 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACTGTATAT
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAACTGTATAC
*
73732979 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATAC
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAACTGTATAC
* *
73733028 ATATGTGATAAGGGCTAATGGCCGACGTGATGAATGTGAAAATGTATAC
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAACTGTATAC
*
73733077 ATATGTGATAAGCCCTAATGGCCGACGTGATGAATGTGAAACTGTATAC
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAACTGTATAC
73733126 ATATGTGATA
1 ATATGTGATA
73733136 TACATATGTG
Statistics
Matches: 198, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 198 1.00
ACGTcount: A:0.34, C:0.12, G:0.26, T:0.28
Consensus pattern (49 bp):
ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAACTGTATAC
Found at i:73732993 original size:98 final size:98
Alignment explanation
Indices: 73732881--73733216 Score: 483
Period size: 98 Copynumber: 3.3 Consensus size: 98
73732871 ACATAATAAT
*
73732881 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACTGTATACATATGTGATAAGGCCT
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAACTGTATACATATGTGATAAGGCCT
* *
73732946 AATGGCCGATGTGATGAATGTGAAACTGTATAT
66 AATGGCCGACGTGATGAATGTGAAACTGTATAC
* *
73732979 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATACATATGTGATAAGGGCT
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAACTGTATACATATGTGATAAGGCCT
*
73733044 AATGGCCGACGTGATGAATGTGAAAATGTATAC
66 AATGGCCGACGTGATGAATGTGAAACTGTATAC
*
73733077 ATATGTGATAAGCCCTAATGGCCGACGTGATGAATGTGAAACTGTATACATATGTGATATACATA
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTG--A----A-AC-----TG-TATACATA
*
73733142 TGTGATAAGGCCTAATGGCCGAGGTGATGAATGTGAAACTGTATAC
53 TGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAACTGTATAC
73733188 ATATGTGATAAGGCCTAATGGCCGACGTG
1 ATATGTGATAAGGCCTAATGGCCGACGTG
73733217 TAACACCCAA
Statistics
Matches: 213, Mismatches: 12, Indels: 13
0.89 0.05 0.05
Matches are distributed among these distances:
98 129 0.61
100 1 0.00
104 1 0.00
105 1 0.00
110 2 0.01
111 79 0.37
ACGTcount: A:0.33, C:0.12, G:0.27, T:0.28
Consensus pattern (98 bp):
ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAACTGTATACATATGTGATAAGGCCT
AATGGCCGACGTGATGAATGTGAAACTGTATAC
Found at i:73733139 original size:13 final size:13
Alignment explanation
Indices: 73733121--73733148 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
73733111 TGTGAAACTG
73733121 TATACATATGTGA
1 TATACATATGTGA
73733134 TATACATATGTGA
1 TATACATATGTGA
73733147 TA
1 TA
73733149 AGGCCTAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.07, G:0.14, T:0.39
Consensus pattern (13 bp):
TATACATATGTGA
Found at i:73733145 original size:62 final size:62
Alignment explanation
Indices: 73733072--73733197 Score: 234
Period size: 62 Copynumber: 2.0 Consensus size: 62
73733062 TGTGAAAATG
73733072 TATACATATGTGATAAGCCCTAATGGCCGACGTGATGAATGTGAAACTGTATACATATGTGA
1 TATACATATGTGATAAGCCCTAATGGCCGACGTGATGAATGTGAAACTGTATACATATGTGA
* *
73733134 TATACATATGTGATAAGGCCTAATGGCCGAGGTGATGAATGTGAAACTGTATACATATGTGA
1 TATACATATGTGATAAGCCCTAATGGCCGACGTGATGAATGTGAAACTGTATACATATGTGA
73733196 TA
1 TA
73733198 AGGCCTAATG
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
62 62 1.00
ACGTcount: A:0.34, C:0.13, G:0.24, T:0.29
Consensus pattern (62 bp):
TATACATATGTGATAAGCCCTAATGGCCGACGTGATGAATGTGAAACTGTATACATATGTGA
Found at i:73734649 original size:29 final size:29
Alignment explanation
Indices: 73734617--73734747 Score: 244
Period size: 29 Copynumber: 4.5 Consensus size: 29
73734607 ATAGTGAATC
73734617 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
*
73734646 CGCACACTTAGTGCTATATAATTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
73734675 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
*
73734704 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
73734733 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
73734748 GTACAATTTT
Statistics
Matches: 99, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 99 1.00
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.37
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:73736488 original size:49 final size:49
Alignment explanation
Indices: 73736415--73736641 Score: 391
Period size: 49 Copynumber: 4.6 Consensus size: 49
73736405 GGATGTCACA
*
73736415 CGACGTGATGAATGTGAAAATGTATACATATGTGATAAGGCCTAATGGC
1 CGACGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGC
* *
73736464 CGACGTGATGAATGTGAAACTGTATACATATGTGATAAGGCCTAATGGC
1 CGACGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGC
* *
73736513 CGATGTGATGAATGTGAAACTGTATATATATGTGATAAGGCCTAATGGC
1 CGACGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGC
*
73736562 CGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGC
1 CGACGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGC
*
73736611 CGACGTGATGAATGTGAAAGTGTATATATAT
1 CGACGTGATGAATGTGAAAATGTATATATAT
73736642 ATGTGGTAAA
Statistics
Matches: 172, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 172 1.00
ACGTcount: A:0.34, C:0.11, G:0.26, T:0.29
Consensus pattern (49 bp):
CGACGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGC
Found at i:73736765 original size:37 final size:36
Alignment explanation
Indices: 73736710--73736796 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
73736700 AACTTAGAAA
73736710 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGT-AGACCCGATGACTACGTGTGGAGAT
73736748 TATGTCCGGGTACGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTA-GACCCGATGACTACGTGTGGAGAT
73736785 TATGTCCGGGTA
1 TATGTCCGGGTA
73736797 AGACTTCGTA
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 43 0.90
38 4 0.08
ACGTcount: A:0.21, C:0.20, G:0.33, T:0.26
Consensus pattern (36 bp):
TATGTCCGGGTAGACCCGATGACTACGTGTGGAGAT
Found at i:73745020 original size:15 final size:15
Alignment explanation
Indices: 73745000--73745029 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
73744990 CATGTATAGG
73745000 CTAGAAGGTTTATGT
1 CTAGAAGGTTTATGT
73745015 CTAGAAGGTTTATGT
1 CTAGAAGGTTTATGT
73745030 ATTAAGTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.07, G:0.27, T:0.40
Consensus pattern (15 bp):
CTAGAAGGTTTATGT
Found at i:73750571 original size:46 final size:45
Alignment explanation
Indices: 73750473--73750684 Score: 196
Period size: 46 Copynumber: 4.6 Consensus size: 45
73750463 ATGCCAATAT
* * **
73750473 CATGTCCCAGACATGGTCTTACACTAACACA-TCTTGTA-GCCGATG
1 CATGTCCCAGACAT-GTCTTACACTAGCATATTC-TCAAGGCCGATG
* *
73750518 CATGTCCCAGACATGTCTTATACTAGCATATGTCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCATAT-TCTCAAGGCCGATG
* ** *
73750564 CATGTCCCAAACATGTCTTACACTAGCACTCGTCTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCA-TATTCTCAAGGCCGATG
* * * **
73750610 CCATGTACCAGACATGGTCTTACACTTGCTCTCATAAT-AAGGCCGATG
1 -CATGTCCCAGACAT-GTCTTACACTAGC-AT-ATTCTCAAGGCCGATG
73750658 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
73750685 TCACAATAGC
Statistics
Matches: 137, Mismatches: 22, Indels: 15
0.79 0.13 0.09
Matches are distributed among these distances:
44 13 0.09
45 16 0.12
46 59 0.43
47 26 0.19
48 22 0.16
49 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.27
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTAGCATATTCTCAAGGCCGATG
Found at i:73753774 original size:17 final size:17
Alignment explanation
Indices: 73753754--73753787 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
73753744 AAAAGTATAG
73753754 CCTTAGTGAAAGTTTTA
1 CCTTAGTGAAAGTTTTA
73753771 CCTTAGTGAAAGTTTTA
1 CCTTAGTGAAAGTTTTA
73753788 TGGCAATGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.12, G:0.18, T:0.41
Consensus pattern (17 bp):
CCTTAGTGAAAGTTTTA
Found at i:73754745 original size:42 final size:41
Alignment explanation
Indices: 73754629--73754746 Score: 130
Period size: 42 Copynumber: 2.8 Consensus size: 41
73754619 GGATTACTAG
**
73754629 GATTACGTGTAAGACCATATCTTGGATATGGCATCAATATTA
1 GATTACGTGTAAGACCATATC-TGGATATGGCATCAATACGA
* * *
73754671 GACTT-CGTGTAAGACCATAGCTGGCTATTGGCATCGATACGA
1 GA-TTACGTGTAAGACCATATCTGGATA-TGGCATCAATACGA
* *
73754713 GATTACATGGAAGACCATATCTGGGATATGGCAT
1 GATTACGTGTAAGACCATATCT-GGATATGGCAT
73754747 TGGTATAGTA
Statistics
Matches: 63, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
41 7 0.11
42 50 0.79
43 6 0.10
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.29
Consensus pattern (41 bp):
GATTACGTGTAAGACCATATCTGGATATGGCATCAATACGA
Found at i:73759957 original size:40 final size:39
Alignment explanation
Indices: 73759897--73760059 Score: 166
Period size: 40 Copynumber: 4.1 Consensus size: 39
73759887 CGGGATTTAA
* ** *
73759897 CCGGATATAACCACAAGCACAACTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAA-TGCCTTCGGGTCTTAGC
* *** *
73759937 CCGGATTTGGTAACTTGCACAATTGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACAA-TGCCTTCGGGTCTTAGC
73759977 CCGGATATAACAACTCGCACAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACAATGCCTTCGGGTCTTAGC
* * * *
73760016 CCGGATATAATC-ACTAGCATAAATGCCTTCAGGACTTAGC
1 CCGGATATAA-CAACTCGCA-CAATGCCTTCGGGTCTTAGC
73760056 CCGG
1 CCGG
73760060 GTATCATTCA
Statistics
Matches: 103, Mismatches: 18, Indels: 4
0.82 0.14 0.03
Matches are distributed among these distances:
39 33 0.32
40 70 0.68
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.25
Consensus pattern (39 bp):
CCGGATATAACAACTCGCACAATGCCTTCGGGTCTTAGC
Found at i:73760043 original size:79 final size:80
Alignment explanation
Indices: 73759897--73760059 Score: 202
Period size: 79 Copynumber: 2.0 Consensus size: 80
73759887 CGGGATTTAA
* * ** * *
73759897 CCGGATATAACCACAAGCACAACTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAATTG
1 CCGGATATAACAACAAGCACAACTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAATG
* *
73759962 CCTTCGGGTCTTAGC
66 CCTTCAGGACTTAGC
** * * *
73759977 CCGGATATAACAACTCGCACAA-TGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATG
1 CCGGATATAACAACAAGCACAACTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAATG
73760041 CCTTCAGGACTTAGC
66 CCTTCAGGACTTAGC
73760056 CCGG
1 CCGG
73760060 GTATCATTCA
Statistics
Matches: 70, Mismatches: 13, Indels: 1
0.83 0.15 0.01
Matches are distributed among these distances:
79 51 0.73
80 19 0.27
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACAAGCACAACTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAATG
CCTTCAGGACTTAGC
Found at i:73767345 original size:314 final size:314
Alignment explanation
Indices: 73766776--73767400 Score: 1083
Period size: 314 Copynumber: 2.0 Consensus size: 314
73766766 ATTAGATCGG
* *
73766776 GGGAAATCGAAAGTCGTCGAGTAGTCGACTCCGTTCGTACGAATCCGTACGAGGTATGTCTATAT
1 GGGAAATCGAAAGTCGTCGAGTAGTCGACTCCGTTCGTACGAATCCGTACGAAGTAAGTCTATAT
*
73766841 ACAAATAAATGTATTTGAAATGGTTTATTTATGGTTATATGATATTGAACAATGATGAATGGCTT
66 ACAAATAAATGTATTTGAAATGGTTTATTTATGCTTATATGATATTGAACAATGATGAATGGCTT
*
73766906 TATGCCTTGAATATGAGATATCCAAGAAAGTATCGACAAAGTTCAACCGTTTGAAAAGTCCAGTA
131 TATGCCTTGAATATGAGATATCCAAGAAAGTATCGACAAAGTTCAACCATTTGAAAAGTCCAGTA
73766971 CGAACCTTAGGAATAGTTAGGATACATATGTCATGACATACGATCCGATATGTGTTCTTGTGTAA
196 CGAACCTTAGGAATAGTTAGGATACATATGTCATGACATACGATCCGATATGTGTTCTTGTGTAA
* **
73767036 GACCACGTCTGGGATGTTGGCATCGACTTATGATTTATGTGTAAGACCATGATT
261 GACCACGTCTGGGATGTTGGCATCGAATTATGATTTACATGTAAGACCATGATT
* *
73767090 GGGAAATCGAAAGTCGTCGAGTAGTCGACTCCGTTCGTCCGAATCCGTATGAAGTAAGTCTATAT
1 GGGAAATCGAAAGTCGTCGAGTAGTCGACTCCGTTCGTACGAATCCGTACGAAGTAAGTCTATAT
73767155 ACAAATAAATGTATTTGAAATGGTTTATTTATGCTTATATGATATTGAACAATGATGAATGGCTT
66 ACAAATAAATGTATTTGAAATGGTTTATTTATGCTTATATGATATTGAACAATGATGAATGGCTT
* *
73767220 TATGCCTTGAATATGAGATATCCGAGAAAGTATCGACAAAGTTCCGA-CATTTGAAAAGTCTCA-
131 TATGCCTTGAATATGAGATATCCAAGAAAGTATCGACAAAGTT-CAACCATTTGAAAAGTC-CAG
*
73767283 TACGAACCTTAGGAATAGTTAGGATACATATGTCATGACATAGGATCCGATATGTGTTCTTGTGT
194 TACGAACCTTAGGAATAGTTAGGATACATATGTCATGACATACGATCCGATATGTGTTCTTGTGT
* * *
73767348 AAGACCATGTCTGGGATGTTGGCATTGAATTGTGATTTACATGTAAGACCATG
259 AAGACCACGTCTGGGATGTTGGCATCGAATTATGATTTACATGTAAGACCATG
73767401 TCTAGGACAT
Statistics
Matches: 294, Mismatches: 15, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
314 290 0.99
315 4 0.01
ACGTcount: A:0.32, C:0.14, G:0.22, T:0.32
Consensus pattern (314 bp):
GGGAAATCGAAAGTCGTCGAGTAGTCGACTCCGTTCGTACGAATCCGTACGAAGTAAGTCTATAT
ACAAATAAATGTATTTGAAATGGTTTATTTATGCTTATATGATATTGAACAATGATGAATGGCTT
TATGCCTTGAATATGAGATATCCAAGAAAGTATCGACAAAGTTCAACCATTTGAAAAGTCCAGTA
CGAACCTTAGGAATAGTTAGGATACATATGTCATGACATACGATCCGATATGTGTTCTTGTGTAA
GACCACGTCTGGGATGTTGGCATCGAATTATGATTTACATGTAAGACCATGATT
Found at i:73767451 original size:42 final size:43
Alignment explanation
Indices: 73767345--73767483 Score: 115
Period size: 42 Copynumber: 3.2 Consensus size: 43
73767335 TGTGTTCTTG
* * * * *
73767345 TGTAAGACCATGTCTGGGA-TGTTGGCATTGA-ATTGTGATTTACA
1 TGTAAGACCATGTCTAGGACAG-TGACATCGATATT-TGA-TTATA
* *
73767389 TGTAAGACCATGTCTAGGACA-TCGACATCG-TATTTGATTTTG
1 TGTAAGACCATGTCTAGGACAGT-GACATCGATATTTGATTATA
* * **
73767431 TGTAAGACCCTGTCTGGGACAGTGGGATCGATATTTGATTATA
1 TGTAAGACCATGTCTAGGACAGTGACATCGATATTTGATTATA
73767474 TGTAAGACCA
1 TGTAAGACCA
73767484 CATTTGAGAC
Statistics
Matches: 76, Mismatches: 14, Indels: 11
0.75 0.14 0.11
Matches are distributed among these distances:
42 26 0.34
43 24 0.32
44 26 0.34
ACGTcount: A:0.27, C:0.14, G:0.25, T:0.34
Consensus pattern (43 bp):
TGTAAGACCATGTCTAGGACAGTGACATCGATATTTGATTATA
Found at i:73769570 original size:39 final size:39
Alignment explanation
Indices: 73769487--73769583 Score: 108
Period size: 39 Copynumber: 2.5 Consensus size: 39
73769477 TGAAACCAAT
*
73769487 TACCAGCAC-AAGCCTGCGGGAATTTAAACCCGGTATAA
1 TACCAGCACGAAGCCTGCGGGAATTTAAACCCGGCATAA
* * * *
73769525 TACCAGCTCGAAGCCTGCGGGACTTT-AGCCCGGACATAT
1 TACCAGCACGAAGCCTGCGGGAATTTAAACCCGG-CATAA
* *
73769564 TTCCAGCACGTAGCCTGCGG
1 TACCAGCACGAAGCCTGCGG
73769584 ACCTTAAGTC
Statistics
Matches: 49, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
38 14 0.29
39 35 0.71
ACGTcount: A:0.26, C:0.30, G:0.25, T:0.20
Consensus pattern (39 bp):
TACCAGCACGAAGCCTGCGGGAATTTAAACCCGGCATAA
Found at i:73769597 original size:39 final size:39
Alignment explanation
Indices: 73769554--73769716 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
73769544 GGACTTTAGC
* * * *
73769554 CCGGACATATTTCCAGCACGTAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
*
73769593 CCGGATATAATTCCAGTACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
*
73769632 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAGGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
*
73769671 CCGGATATAATTCCAGCACATAGCCTGCGGACCCCAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
73769710 CCGGATA
1 CCGGATA
73769717 CACTTCAAAT
Statistics
Matches: 115, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 115 1.00
ACGTcount: A:0.26, C:0.31, G:0.22, T:0.21
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
Found at i:73769603 original size:78 final size:79
Alignment explanation
Indices: 73769516--73769714 Score: 230
Period size: 78 Copynumber: 2.6 Consensus size: 79
73769506 GAATTTAAAC
* * * * *
73769516 CCGG-TATAATACCAGCTCGA-AGCCTGCGGGA-CTTTAGCCCGGACATATTTCCAGCACGTAGC
1 CCGGATATAATTCCAGCTC-ATAGCCTGCGGGACCCTAAGCCCGGACATAATTCCAGCACATAGC
*
73769578 CTGCGGACCTTAAGT
65 CTGCGGACCCTAAGT
* *
73769593 CCGGATATAATTCCAG-TACATAGCCTGC-GGACCCTAAGTCCGGATATAATTCCAGCACATAGC
1 CCGGATATAATTCCAGCT-CATAGCCTGCGGGACCCTAAGCCCGGACATAATTCCAGCACATAGC
*
73769656 CTGCGGACCCTAGGT
65 CTGCGGACCCTAAGT
* * *
73769671 CCGGATATAATTCCAGCACATAGCCTGC-GGACCCCAAGTCCGGA
1 CCGGATATAATTCCAGCTCATAGCCTGCGGGACCCTAAGCCCGGA
73769715 TACACTTCAA
Statistics
Matches: 106, Mismatches: 11, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
77 9 0.08
78 97 0.92
ACGTcount: A:0.26, C:0.31, G:0.23, T:0.21
Consensus pattern (79 bp):
CCGGATATAATTCCAGCTCATAGCCTGCGGGACCCTAAGCCCGGACATAATTCCAGCACATAGCC
TGCGGACCCTAAGT
Found at i:73774371 original size:50 final size:49
Alignment explanation
Indices: 73774251--73774439 Score: 234
Period size: 50 Copynumber: 3.8 Consensus size: 49
73774241 TAGCCAAAGC
* * * * *
73774251 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAGT
* *
73774300 TATCTGGTACACGTAGTAGCCTGAACTTAGTACTACACACGTGACCTAGC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC-AGT
* * *
73774350 CATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAGT
* * *
73774401 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACA
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACA
73774440 TGCGACCTCA
Statistics
Matches: 120, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
49 41 0.34
50 42 0.35
51 37 0.31
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.26
Consensus pattern (49 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAGT
Found at i:73774447 original size:101 final size:99
Alignment explanation
Indices: 73774264--73774447 Score: 269
Period size: 101 Copynumber: 1.8 Consensus size: 99
73774254 CTGGTACGCA
* * *
73774264 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACACGTAGTAGCCTGAACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCGGGTACACATAGTAGCCTGAACTTA
*
73774329 GTACTACACACGTGACCTAGCCATCTGATACACG
66 GTACTACACACGCGACCTAGCCATCTGATACACG
* * * *
73774363 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCGGGTACACATAGTAGCCTGAACT
*
73774428 TAGTACTACACATGCGACCT
64 TAGTACTACACACGCGACCT
73774448 CACAATAGAT
Statistics
Matches: 74, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
99 29 0.39
100 3 0.04
101 42 0.57
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.26
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCGGGTACACATAGTAGCCTGAACTTA
GTACTACACACGCGACCTAGCCATCTGATACACG
Found at i:73782627 original size:18 final size:17
Alignment explanation
Indices: 73782591--73782624 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
73782581 CTGAATGACT
*
73782591 GCCTTGTTCTCTTAAAA
1 GCCTTGTTATCTTAAAA
73782608 GCCTTGTTATCTTAAAA
1 GCCTTGTTATCTTAAAA
73782625 AGCTCTCATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.26, C:0.21, G:0.12, T:0.41
Consensus pattern (17 bp):
GCCTTGTTATCTTAAAA
Found at i:73788328 original size:20 final size:20
Alignment explanation
Indices: 73788299--73788343 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
73788289 AGCACATGTA
* *
73788299 TTCATAAAATTTTAGAAATT
1 TTCATAAAATTTTACAAATG
*
73788319 TTCATCAAATTTTACAAATG
1 TTCATAAAATTTTACAAATG
73788339 TTCAT
1 TTCAT
73788344 TGTAGTCCTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.40, C:0.11, G:0.04, T:0.44
Consensus pattern (20 bp):
TTCATAAAATTTTACAAATG
Found at i:73792195 original size:51 final size:51
Alignment explanation
Indices: 73792110--73792234 Score: 130
Period size: 51 Copynumber: 2.5 Consensus size: 51
73792100 CGGATGCCCG
* * *
73792110 GTGGCCTGT-ACATAGTACCACCCTTGTAGTCAAAGCCACCTTCTT-CACAAA
1 GTGGCCT-TCACATAGTACCACACTTGGAGCCAAAGCCACCTT-TTACACAAA
* * *
73792161 GTGGCCTTCACATAGTACCACACTTGCGA-CCAAAGCTATCTTTTACACATA
1 GTGGCCTTCACATAGTACCACACTTG-GAGCCAAAGCCACCTTTTACACAAA
* *
73792212 GTGGCCTACACTTAGTACCACAC
1 GTGGCCTTCACATAGTACCACAC
73792235 ATGTGATCGA
Statistics
Matches: 63, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
50 3 0.05
51 59 0.94
52 1 0.02
ACGTcount: A:0.28, C:0.31, G:0.15, T:0.26
Consensus pattern (51 bp):
GTGGCCTTCACATAGTACCACACTTGGAGCCAAAGCCACCTTTTACACAAA
Found at i:73792335 original size:50 final size:51
Alignment explanation
Indices: 73792259--73792390 Score: 135
Period size: 52 Copynumber: 2.6 Consensus size: 51
73792249 ATCGGGTACG
* * *
73792259 CATAGTAGCTTACACTTAGTAATACACATGCGACCT-AACCA-TCT-AGCA
1 CATAGTAGCCTACACTTAGTACTACACATGCGACCTAAACCATTCTAAACA
* * * *
73792307 CATGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAAACCATTTTAAACA
1 CA--TAGTAGCCTACACTTAGTACTACACATGCGACCT-AAACCATTCTAAACA
* *
73792361 CATAGTAGCCTCCACATAGTACTACACATG
1 CATAGTAGCCTACACTTAGTACTACACATG
73792391 TGTTCTCACA
Statistics
Matches: 68, Mismatches: 10, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
48 2 0.03
50 29 0.43
52 30 0.44
53 2 0.03
54 5 0.07
ACGTcount: A:0.35, C:0.27, G:0.13, T:0.25
Consensus pattern (51 bp):
CATAGTAGCCTACACTTAGTACTACACATGCGACCTAAACCATTCTAAACA
Found at i:73798099 original size:39 final size:40
Alignment explanation
Indices: 73797986--73798208 Score: 242
Period size: 39 Copynumber: 5.7 Consensus size: 40
73797976 ACGACTAGCT
*
73797986 CAAATGCCTTCGGGAC-AAACCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
* *
73798025 CGAATGCCTTCGGGACTTAACCCGGGTTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
73798065 CAAATGCCTTCGGG-CTTAACCCGGATTTATTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
73798104 CAAATGCCTTCGGG-CTTAACCCGGATTTATTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * ** * * * **
73798143 CGAACGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAACA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
73798184 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
73798209 CATCATTCAA
Statistics
Matches: 161, Mismatches: 17, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
38 2 0.01
39 86 0.53
40 62 0.39
41 11 0.07
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:73798117 original size:79 final size:78
Alignment explanation
Indices: 73797986--73798155 Score: 236
Period size: 79 Copynumber: 2.2 Consensus size: 78
73797976 ACGACTAGCT
* *
73797986 CAAATGCCTTCGGGACAAACCCGGTTATAGTAACTCGCACGAATGCCTTCGGGACTTAACCCGGG
1 CAAATGCCTTCGGGACAAACCCGGTTATAGTAACTCGCACAAATGCCTTCGGG-CTTAACCCGGA
73798051 TTTAGTAACTCGCA
65 TTTAGTAACTCGCA
* *
73798065 CAAATGCCTTCGGG-CTTAACCCGGATT-TATTAACTCGCACAAATGCCTTCGGGCTTAACCCGG
1 CAAATGCCTTCGGGAC-AAACCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGCTTAACCCGG
*
73798128 ATTTATTAACTCGCA
64 ATTTAGTAACTCGCA
* *
73798143 CGAACGCCTTCGG
1 CAAATGCCTTCGG
73798156 ATCTTAGTCC
Statistics
Matches: 82, Mismatches: 7, Indels: 5
0.87 0.07 0.05
Matches are distributed among these distances:
78 35 0.43
79 45 0.55
80 2 0.02
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGACAAACCCGGTTATAGTAACTCGCACAAATGCCTTCGGGCTTAACCCGGAT
TTAGTAACTCGCA
Found at i:73807155 original size:22 final size:23
Alignment explanation
Indices: 73807108--73807158 Score: 63
Period size: 21 Copynumber: 2.3 Consensus size: 23
73807098 ATGTTGTTAC
*
73807108 TTTTATTTTATTTTCAGACTACT
1 TTTTATTTTATTTTAAGACTACT
73807131 TTTTATTTT-TTTTAAG-CTTA-T
1 TTTTATTTTATTTTAAGAC-TACT
73807152 TTTTATT
1 TTTTATT
73807159 AGGTTTTATA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
21 9 0.35
22 8 0.31
23 9 0.35
ACGTcount: A:0.20, C:0.08, G:0.04, T:0.69
Consensus pattern (23 bp):
TTTTATTTTATTTTAAGACTACT
Found at i:73808535 original size:70 final size:70
Alignment explanation
Indices: 73808460--73808594 Score: 216
Period size: 70 Copynumber: 1.9 Consensus size: 70
73808450 TAGTTTATTA
* * * * *
73808460 CTAATTAATTTGCTGCTGTAATGTTGTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTG
1 CTAATTAATATGCTACTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTG
73808525 CTTAG
66 CTTAG
*
73808530 CTAATTAATATGCTATTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTG
1 CTAATTAATATGCTACTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTG
73808595 TTATGTGCTA
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
70 59 1.00
ACGTcount: A:0.31, C:0.12, G:0.19, T:0.38
Consensus pattern (70 bp):
CTAATTAATATGCTACTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTG
CTTAG
Found at i:73809433 original size:43 final size:43
Alignment explanation
Indices: 73809370--73809524 Score: 229
Period size: 43 Copynumber: 3.6 Consensus size: 43
73809360 TATCGAAATG
*
73809370 TGATATACGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAAA
1 TGATAT-CGGGCTTCAGGCCTAGCAGGCTATAATGCCGGTGAAA
* *
73809414 TGATATCGGGCTTCAGGCCTAGTAGGCTATAATGCCGGTGAGA
1 TGATATCGGGCTTCAGGCCTAGCAGGCTATAATGCCGGTGAAA
* * * *
73809457 TAATATTGGGCCTCGGGCCTAGCAGGCTATAATGCCGGTGAAA
1 TGATATCGGGCTTCAGGCCTAGCAGGCTATAATGCCGGTGAAA
*
73809500 TGATATCGGGCTTCAAGCCTAGCAG
1 TGATATCGGGCTTCAGGCCTAGCAG
73809525 CCGAAATGCC
Statistics
Matches: 97, Mismatches: 14, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
43 91 0.94
44 6 0.06
ACGTcount: A:0.25, C:0.21, G:0.31, T:0.24
Consensus pattern (43 bp):
TGATATCGGGCTTCAGGCCTAGCAGGCTATAATGCCGGTGAAA
Found at i:73818480 original size:49 final size:47
Alignment explanation
Indices: 73818423--73818538 Score: 151
Period size: 49 Copynumber: 2.4 Consensus size: 47
73818413 TTAGTGCAAG
73818423 ACCTGTCTGGGACATGGCATTGACACAGATAAGTGAGAGCCAGTGTAAA
1 ACCTGTCTGGGACATGGCATTGACACAGAT--GTGAGAGCCAGTGTAAA
** * *
73818472 ACCTGTCTGGGACATGGCATTGACTTAGATGTGAGAGCTAGTGTAAG
1 ACCTGTCTGGGACATGGCATTGACACAGATGTGAGAGCCAGTGTAAA
* *
73818519 ACCATGTTTGGAACATGGCA
1 ACC-TGTCTGGGACATGGCA
73818539 CCGGCATCGT
Statistics
Matches: 60, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
47 18 0.30
48 14 0.23
49 28 0.47
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.24
Consensus pattern (47 bp):
ACCTGTCTGGGACATGGCATTGACACAGATGTGAGAGCCAGTGTAAA
Found at i:73823507 original size:20 final size:20
Alignment explanation
Indices: 73823470--73823533 Score: 87
Period size: 20 Copynumber: 3.3 Consensus size: 20
73823460 TGTGGGCAGG
*
73823470 CCGTGTGG-TCA-CACACGC
1 CCGTGTGGCTCAGGACACGC
73823488 CCGTGTGGCTCAGGACACGC
1 CCGTGTGGCTCAGGACACGC
*
73823508 CCATGTGGCTCAGGACACGC
1 CCGTGTGGCTCAGGACACGC
*
73823528 TCGTGT
1 CCGTGT
73823534 AACTCTCTGT
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
18 8 0.20
19 3 0.08
20 29 0.73
ACGTcount: A:0.16, C:0.34, G:0.31, T:0.19
Consensus pattern (20 bp):
CCGTGTGGCTCAGGACACGC
Found at i:73826425 original size:93 final size:93
Alignment explanation
Indices: 73826262--73826433 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
73826252 CGCCCATAAG
* *
73826262 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
73826327 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
73826355 CGAACTCGGACTTAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
73826420 GCGAGTTCGGATGC
66 ACGAGTTCGGATGC
73826434 TCAACCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:73826430 original size:46 final size:46
Alignment explanation
Indices: 73826255--73826430 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
73826245 TGTAACCCGC
* * *
73826255 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
73826301 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
73826351 -C-TCA-CGAACTCGGACTTAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
73826394 CCATAAGTGAACTCGGACTCAACTCAGCGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
73826431 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 28 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:73828242 original size:48 final size:48
Alignment explanation
Indices: 73828168--73828344 Score: 282
Period size: 48 Copynumber: 3.7 Consensus size: 48
73828158 ATGATGCCTC
*
73828168 ATGCCGATGCCATGTCCCAAACATGGTCTTACATTGGCTCACATAACA
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACATTGGCTCACATAACA
* *
73828216 ATACCGATGCCATGTCCCAGACATGGTCTTACATTGGCTCGCATAACA
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACATTGGCTCACATAACA
* * **
73828264 ATGTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATGTAACA
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACATTGGCTCACATAACA
*
73828312 ATGCCGATGTCATGTCCCAGACATGGTCTTACA
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACA
73828345 CTGTTACACA
Statistics
Matches: 118, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 118 1.00
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.26
Consensus pattern (48 bp):
ATGCCGATGCCATGTCCCAGACATGGTCTTACATTGGCTCACATAACA
Found at i:73833872 original size:29 final size:29
Alignment explanation
Indices: 73833838--73833940 Score: 127
Period size: 29 Copynumber: 3.6 Consensus size: 29
73833828 TAATCAGCCG
*
73833838 CGCACACTTAGTGCCATATACTTT-AAACT
1 CGCACACTTAGTGCCATACA-TTTCAAACT
* *
73833867 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATACATTTCAAACT
* *
73833896 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATACATTTCAAACT
* *
73833925 CACACACTCAGTGCCA
1 CGCACACTTAGTGCCA
73833941 ATCTCTCAAC
Statistics
Matches: 68, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
28 3 0.04
29 65 0.96
ACGTcount: A:0.27, C:0.32, G:0.15, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACATTTCAAACT
Found at i:73837414 original size:35 final size:35
Alignment explanation
Indices: 73837336--73837406 Score: 97
Period size: 35 Copynumber: 2.0 Consensus size: 35
73837326 ATATATAAGC
* *
73837336 TCAATATAAACTCACATGTAACCAAATTCACATGT
1 TCAATATAAACTCACATGTAACCAAATACACAAGT
* * *
73837371 TCAATATAAATTCACATGTAACCGAATACTCAAGT
1 TCAATATAAACTCACATGTAACCAAATACACAAGT
73837406 T
1 T
73837407 TGATATAAGC
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.42, C:0.21, G:0.07, T:0.30
Consensus pattern (35 bp):
TCAATATAAACTCACATGTAACCAAATACACAAGT
Found at i:73840382 original size:6 final size:6
Alignment explanation
Indices: 73840364--73840450 Score: 61
Period size: 6 Copynumber: 14.2 Consensus size: 6
73840354 AATTAAAATG
* * * * *
73840364 AGAATC AGGATC AGAATC AGAATT AGAATC AGAATT AG-GTGAC AGAATT
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC
* *
73840413 AGAATC AGAATC AGTATC AGGTAA-C AGAATC AAAATC A
1 AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC A
73840451 AAATGTGAAT
Statistics
Matches: 62, Mismatches: 13, Indels: 12
0.71 0.15 0.14
Matches are distributed among these distances:
5 3 0.05
6 52 0.84
7 5 0.08
8 2 0.03
ACGTcount: A:0.47, C:0.13, G:0.20, T:0.21
Consensus pattern (6 bp):
AGAATC
Found at i:73840417 original size:31 final size:31
Alignment explanation
Indices: 73840364--73840450 Score: 104
Period size: 31 Copynumber: 2.8 Consensus size: 31
73840354 AATTAAAATG
* *
73840364 AGAATCAGG-ATCAGAATCAGAATTAGAATC
1 AGAATCAGGTAACAGAATCAGAATCAGAATC
* * *
73840394 AGAATTAGGTGACAGAATTAGAATCAGAATC
1 AGAATCAGGTAACAGAATCAGAATCAGAATC
* *
73840425 AGTATCAGGTAACAGAATCAAAATCA
1 AGAATCAGGTAACAGAATCAGAATCA
73840451 AAATGTGAAT
Statistics
Matches: 46, Mismatches: 10, Indels: 1
0.81 0.18 0.02
Matches are distributed among these distances:
30 8 0.17
31 38 0.83
ACGTcount: A:0.47, C:0.13, G:0.20, T:0.21
Consensus pattern (31 bp):
AGAATCAGGTAACAGAATCAGAATCAGAATC
Found at i:73840610 original size:2 final size:2
Alignment explanation
Indices: 73840603--73840632 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
73840593 CCAGATACGG
73840603 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
73840633 GTGTGTGGCG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:73840928 original size:27 final size:27
Alignment explanation
Indices: 73840898--73841120 Score: 268
Period size: 27 Copynumber: 8.3 Consensus size: 27
73840888 GGGGCAAAAT
* * *
73840898 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
73840925 GGTAATTCTACCTTAC-AGGATTATTTC
1 GGTAATTCTACCCTACAAGG-GTATTTC
* * *
73840952 AGTAATTCTACCCTACAGGGGTATTTA
1 GGTAATTCTACCCTACAAGGGTATTTC
*
73840979 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
73841006 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
73841033 AGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
73841060 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
73841087 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
73841114 GATAATT
1 GGTAATT
73841121 TTGTAAATCA
Statistics
Matches: 170, Mismatches: 24, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
26 3 0.02
27 165 0.97
28 2 0.01
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:73841120 original size:81 final size:81
Alignment explanation
Indices: 73840898--73841113 Score: 310
Period size: 81 Copynumber: 2.7 Consensus size: 81
73840888 GGGGCAAAAT
* * * * *
73840898 GGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCTTAC-AGGATTATTTCAGTAATTCTA
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGG-GTATTTCAGTAATTCTA
73840962 CCCTACAGGGGTATTTA
65 CCCTACAGGGGTATTTA
* * *
73840979 GGTATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTAC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTAC
73841044 CCTACAGGGGTATTTTA
66 CCTACAGGGGTA-TTTA
* *
73841061 -GTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTC
73841114 GATAATTTTG
Statistics
Matches: 120, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
81 114 0.95
82 6 0.05
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.36
Consensus pattern (81 bp):
GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTAC
CCTACAGGGGTATTTA
Found at i:73841132 original size:27 final size:27
Alignment explanation
Indices: 73841102--73841398 Score: 131
Period size: 27 Copynumber: 11.0 Consensus size: 27
73841092 TTCTACCCTA
**
73841102 CAAGGGTATTTCGATAATTTTGTAAAT
1 CAAGGGTATTTCGATAATTTTACAAAT
*** * **
73841129 CAAGGGTAAAAC-AGTAATTCTGTAAAT
1 CAAGGGTATTTCGA-TAATTTTACAAAT
* *
73841156 CAAGGGTACTTT-GGTAATTTTACAAGT
1 CAAGGGTA-TTTCGATAATTTTACAAAT
* * **
73841183 CGAGGGTATTTCAATAATTTTACAGGTT
1 CAAGGGTATTTCGATAATTTTACA-AAT
* *
73841211 GAA-GGTATTTC-AGTAATTTCACAAAT
1 CAAGGGTATTTCGA-TAATTTTACAAAT
* * * *
73841237 TAAGGGTATTTTGGTAATTTTAGAAA-
1 CAAGGGTATTTCGATAATTTTACAAAT
* * *
73841263 CTAGGGGTATTTTGATAATTTTACAAAC
1 C-AAGGGTATTTCGATAATTTTACAAAT
* * * *
73841291 CAGGGGTATTTTGGTAATTTTATAAA-
1 CAAGGGTATTTCGATAATTTTACAAAT
* *
73841317 CAAAGGGTATTT-TAGTAATTTTACAAAC
1 C-AAGGGTATTTCGA-TAATTTTACAAAT
* * * ** *
73841345 CAGGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTCGATAATTTTACAAAT
* * * *
73841372 CATGGGTATTTTGGTGATTTTACAAAT
1 CAAGGGTATTTCGATAATTTTACAAAT
73841399 TGAGGACATT
Statistics
Matches: 209, Mismatches: 47, Indels: 28
0.74 0.17 0.10
Matches are distributed among these distances:
26 9 0.04
27 196 0.94
28 4 0.02
ACGTcount: A:0.33, C:0.08, G:0.20, T:0.38
Consensus pattern (27 bp):
CAAGGGTATTTCGATAATTTTACAAAT
Found at i:73841272 original size:54 final size:54
Alignment explanation
Indices: 73841214--73841397 Score: 219
Period size: 54 Copynumber: 3.4 Consensus size: 54
73841204 ACAGGTTGAA
* * ** * *
73841214 GGTATTTCAGTAATTTCACAAATTAAGGGTATTTTGGTAATTTTAGAAACTAGG
1 GGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTAGAAACAAAG
* *
73841268 GGTATTTT-GATAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAAG
1 GGTATTTTAG-TAATTTTACAAACCAAGGGTATTTTGGTAATTTTAGAAACAAAG
* * *
73841322 GGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTT-GTAAACCATG
1 GGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTAG-AAACAAAG
* *
73841376 GGTATTTTGGTGATTTTACAAA
1 GGTATTTTAGTAATTTTACAAA
73841398 TTGAGGACAT
Statistics
Matches: 114, Mismatches: 13, Indels: 6
0.86 0.10 0.05
Matches are distributed among these distances:
53 1 0.01
54 112 0.98
55 1 0.01
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (54 bp):
GGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTAGAAACAAAG
Found at i:73841299 original size:81 final size:81
Alignment explanation
Indices: 73841214--73841418 Score: 257
Period size: 81 Copynumber: 2.5 Consensus size: 81
73841204 ACAGGTTGAA
** * * * *
73841214 GGTATTTCAGTAATTTCACAAATTAAGGGTATTTTGGTAATTTTAGAAACTAGGGGTATTTTGAT
1 GGTATTTTGGTAATTTTACAAATTAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGAT
73841279 AATTTTACAAACCAGG
66 AATTTTACAAACCAGG
* ** *
73841295 GGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGT
1 GGTATTTTGGTAATTTTACAAATTAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGAT
** *
73841360 AATTTTGTAAACCATG
66 AATTTTACAAACCAGG
* * **
73841376 GGTATTTTGGTGATTTTACAAATTGAGGACATTTTAGTAATTT
1 GGTATTTTGGTAATTTTACAAATTAAGGGTATTTTAGTAATTT
73841419 GGTAAACTAA
Statistics
Matches: 104, Mismatches: 20, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
81 104 1.00
ACGTcount: A:0.32, C:0.07, G:0.20, T:0.41
Consensus pattern (81 bp):
GGTATTTTGGTAATTTTACAAATTAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGAT
AATTTTACAAACCAGG
Found at i:73841410 original size:54 final size:54
Alignment explanation
Indices: 73841240--73841397 Score: 228
Period size: 54 Copynumber: 2.9 Consensus size: 54
73841230 CACAAATTAA
* * *
73841240 GGGTATTTTGGTAATTTTAG-AAACTAGGGGTATTTTGATAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTT-GTAAACAAAGGGTATTTTGGTAATTTTACAAACCAG
* *
73841294 GGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTGTAAACAAAGGGTATTTTGGTAATTTTACAAACCAG
* * *
73841348 GGGTATTTTGGTAATTTTGTAAACCATGGGTATTTTGGTGATTTTACAAA
1 GGGTATTTTGGTAATTTTGTAAACAAAGGGTATTTTGGTAATTTTACAAA
73841398 TTGAGGACAT
Statistics
Matches: 93, Mismatches: 10, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
54 93 1.00
ACGTcount: A:0.31, C:0.07, G:0.22, T:0.41
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTGTAAACAAAGGGTATTTTGGTAATTTTACAAACCAG
Found at i:73841416 original size:54 final size:54
Alignment explanation
Indices: 73841244--73841430 Score: 182
Period size: 54 Copynumber: 3.4 Consensus size: 54
73841234 AATTAAGGGT
* * **
73841244 ATTTTGGTAATTTTAG-AAACTAGGGGTATTTT-GATAATTTTACAAACCAGGGGT
1 ATTTTGGTAATTTT-GTAAACAAAGGGTATTTTAG-TAATTTTACAAACCAGGGAC
* **
73841298 ATTTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACCAGGGGT
1 ATTTTGGTAATTTTGTAAACAAAGGGTATTTTAGTAATTTTACAAACCAGGGAC
* * * * **
73841352 ATTTTGGTAATTTTGTAAACCATGGGTATTTTGGTGATTTTACAAA-TTGAGGAC
1 ATTTTGGTAATTTTGTAAACAAAGGGTATTTTAGTAATTTTACAAACCAG-GGAC
* *
73841406 ATTTTAGTAATTTGGTAAACTAAAG
1 ATTTTGGTAATTTTGTAAAC-AAAG
73841431 TATTCTAAAC
Statistics
Matches: 113, Mismatches: 16, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
53 1 0.01
54 109 0.96
55 3 0.03
ACGTcount: A:0.33, C:0.07, G:0.20, T:0.40
Consensus pattern (54 bp):
ATTTTGGTAATTTTGTAAACAAAGGGTATTTTAGTAATTTTACAAACCAGGGAC
Done.