Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 235 of 318
Found at i:73844364 original size:46 final size:46
Alignment explanation
Indices: 73844311--73844486 Score: 223
Period size: 46 Copynumber: 3.8 Consensus size: 46
73844301 TATTTGGGCA
73844311 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
73844357 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
* *
73844404 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
73844450 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
73844487 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 13, Indels: 14
0.80 0.09 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 66 0.60
47 32 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:73844466 original size:93 final size:93
Alignment explanation
Indices: 73844307--73844478 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
73844297 GGGATATTTG
* *
73844307 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
73844372 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
73844400 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
73844465 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
73844479 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:73857624 original size:10 final size:10
Alignment explanation
Indices: 73857598--73857637 Score: 53
Period size: 10 Copynumber: 3.9 Consensus size: 10
73857588 ACTGCATAAA
*
73857598 CTTTCTGTTT
1 CTTTCTTTTT
73857608 CTTTCTTTTT
1 CTTTCTTTTT
73857618 CTTTCTTTTTT
1 CTTTC-TTTTT
*
73857629 TTTTCTTTT
1 CTTTCTTTT
73857638 AAAGCTATGA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
10 18 0.67
11 9 0.33
ACGTcount: A:0.00, C:0.17, G:0.03, T:0.80
Consensus pattern (10 bp):
CTTTCTTTTT
Found at i:73859479 original size:3 final size:3
Alignment explanation
Indices: 73859471--73859501 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
73859461 TATATTTTAG
73859471 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
73859502 AGGAAAACTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:73859905 original size:26 final size:28
Alignment explanation
Indices: 73859862--73859918 Score: 91
Period size: 28 Copynumber: 2.1 Consensus size: 28
73859852 TTTGATAAAA
73859862 TTTAAGAGATAATTAATTTTAAAA-TACT
1 TTTAAGAGATAA-TAATTTTAAAATTACT
73859890 TTTAAGAGATAA-AATTTTAAAATTACT
1 TTTAAGAGATAATAATTTTAAAATTACT
73859917 TT
1 TT
73859919 CAAACACTCA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
26 10 0.36
27 6 0.21
28 12 0.43
ACGTcount: A:0.46, C:0.04, G:0.07, T:0.44
Consensus pattern (28 bp):
TTTAAGAGATAATAATTTTAAAATTACT
Found at i:73860258 original size:113 final size:113
Alignment explanation
Indices: 73860037--73860267 Score: 259
Period size: 113 Copynumber: 2.0 Consensus size: 113
73860027 AAGTTCATAA
** * * * *
73860037 AAAATTGAGCAAAAATCAAAAGTATCGATACTCTGAACATAGTATCGATACCTTGCAAAAATAAT
1 AAAATTGAAAAAAAATAAAAAGTATCAATACCCTGAACAAAGTATCGATACCTTGCAAAAATAAT
* * * *
73860102 CGATATCCTTGCCTGGTATCAATACCGATTTGAGCTTTAATGTTTTAG
66 CAATATCCTTGCCTGGTATCAATACCGATTTAAGCATCAATGTTTTAG
* *
73860150 AAAATTGAAAAAAAATAAAAAAGTATCAATACCC-GTAACAAAGTATCGATACCTTGCAAAATTT
1 AAAATTGAAAAAAAAT-AAAAAGTATCAATACCCTG-AACAAAGTATCGATACCTTGCAAAAATA
* * * * * * *
73860214 ATCAATA-CCTTTCCTGGTATCGATATCGTTTTAAGGATCGATGTTTTGG
64 ATCAATATCCTTGCCTGGTATCAATACCGATTTAAGCATCAATGTTTTAG
73860263 AAAAT
1 AAAAT
73860268 CAAAGAAAAA
Statistics
Matches: 97, Mismatches: 19, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
113 52 0.54
114 45 0.46
ACGTcount: A:0.39, C:0.16, G:0.14, T:0.31
Consensus pattern (113 bp):
AAAATTGAAAAAAAATAAAAAGTATCAATACCCTGAACAAAGTATCGATACCTTGCAAAAATAAT
CAATATCCTTGCCTGGTATCAATACCGATTTAAGCATCAATGTTTTAG
Found at i:73860277 original size:113 final size:114
Alignment explanation
Indices: 73860054--73860278 Score: 258
Period size: 114 Copynumber: 2.0 Consensus size: 114
73860044 AGCAAAAATC
* * * *
73860054 AAAAGTATCGATACTCTGAACATAGTATCGATACCTTGCAAAAATAATCGATATCCTTGCCTGGT
1 AAAAGTATCAATACCCTGAACAAAGTATCGATACCTTGCAAAAATAATCAATATCCTTGCCTGGT
* * * *
73860119 ATCAATACCGATTTGAGCTTTAATGTTTTAGAAAATTGAAAAAAAATAA
66 ATCAATACCGATTTAAGCATCAATGTTTTAGAAAATTCAAAAAAAATAA
* * *
73860168 AAAAGTATCAATACCC-GTAACAAAGTATCGATACCTTGCAAAATTTATCAATA-CCTTTCCTGG
1 AAAAGTATCAATACCCTG-AACAAAGTATCGATACCTTGCAAAAATAATCAATATCCTTGCCTGG
* * * * * *
73860231 TATCGATATCGTTTTAAGGATCGATGTTTTGGAAAA-TCAAAGAAAAAT
65 TATCAATACCGATTTAAGCATCAATGTTTTAGAAAATTCAAA-AAAAAT
73860279 TGCTCGAGTA
Statistics
Matches: 92, Mismatches: 17, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
112 4 0.04
113 43 0.47
114 45 0.49
ACGTcount: A:0.40, C:0.16, G:0.14, T:0.31
Consensus pattern (114 bp):
AAAAGTATCAATACCCTGAACAAAGTATCGATACCTTGCAAAAATAATCAATATCCTTGCCTGGT
ATCAATACCGATTTAAGCATCAATGTTTTAGAAAATTCAAAAAAAATAA
Found at i:73864126 original size:40 final size:40
Alignment explanation
Indices: 73864071--73864259 Score: 315
Period size: 40 Copynumber: 4.7 Consensus size: 40
73864061 TATTCGAATG
* *
73864071 ATATCCGGGTTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
*
73864111 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
73864151 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
* * *
73864191 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
*
73864231 ATATCCGGGCTAAGACCCGAAGGCATTTG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTG
73864260 CGAGTTGCTA
Statistics
Matches: 140, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 140 1.00
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
Found at i:73868105 original size:40 final size:40
Alignment explanation
Indices: 73868046--73868238 Score: 215
Period size: 40 Copynumber: 4.8 Consensus size: 40
73868036 CAATTGAATG
* * * *
73868046 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
73868086 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
73868126 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
73868166 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* *
73868206 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
73868239 TGTGGTTATA
Statistics
Matches: 130, Mismatches: 23, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 130 1.00
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:73875859 original size:40 final size:40
Alignment explanation
Indices: 73875804--73876025 Score: 331
Period size: 40 Copynumber: 5.6 Consensus size: 40
73875794 TATTCGAATG
* *
73875804 ATATCCGGGTTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
*
73875844 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
73875884 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
* * *
73875924 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
* * *
73875964 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGATT
*
73876004 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
73876026 TACTTGGGTT
Statistics
Matches: 168, Mismatches: 13, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 14 0.08
40 152 0.90
41 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.29
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
Found at i:73883497 original size:2 final size:2
Alignment explanation
Indices: 73883490--73883527 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
73883480 ACCAGAACAG
73883490 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
73883528 GTGTGGCGAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:73884294 original size:27 final size:27
Alignment explanation
Indices: 73884264--73884544 Score: 411
Period size: 27 Copynumber: 10.4 Consensus size: 27
73884254 GGGGCAAAAT
* * *
73884264 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
73884291 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
73884318 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
**
73884345 GGTAATTCTATTCTAC-AGAGGTATTTC
1 GGTAATTCTACCCTACAAG-GGTATTTC
*
73884372 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
73884399 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
73884426 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
73884453 AGAAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
73884480 GGTAATTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
73884507 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
73884534 GGTAATTCTAC
1 GGTAATTCTAC
73884545 AACTTATCCA
Statistics
Matches: 230, Mismatches: 22, Indels: 4
0.90 0.09 0.02
Matches are distributed among these distances:
26 2 0.01
27 227 0.99
28 1 0.00
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:73889072 original size:27 final size:27
Alignment explanation
Indices: 73889042--73889099 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
73889032 ATATATGAAA
73889042 ACTTGAGATGATGATATTTGTACATGG
1 ACTTGAGATGATGATATTTGTACATGG
* ** *
73889069 ACTTTATTTGATGATATTTGTATATGG
1 ACTTGAGATGATGATATTTGTACATGG
73889096 ACTT
1 ACTT
73889100 TATTTGATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.28, C:0.07, G:0.21, T:0.45
Consensus pattern (27 bp):
ACTTGAGATGATGATATTTGTACATGG
Found at i:73889100 original size:27 final size:27
Alignment explanation
Indices: 73889050--73889107 Score: 107
Period size: 27 Copynumber: 2.1 Consensus size: 27
73889040 AAACTTGAGA
73889050 TGATGATATTTGTACATGGACTTTATT
1 TGATGATATTTGTACATGGACTTTATT
*
73889077 TGATGATATTTGTATATGGACTTTATT
1 TGATGATATTTGTACATGGACTTTATT
73889104 TGAT
1 TGAT
73889108 ATAAGATTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.26, C:0.05, G:0.19, T:0.50
Consensus pattern (27 bp):
TGATGATATTTGTACATGGACTTTATT
Found at i:73891996 original size:18 final size:18
Alignment explanation
Indices: 73891959--73891997 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
73891949 TTGGAAATCA
*
73891959 AAATTATTAAAAGATGAT
1 AAATTATTAAAAGATAAT
73891977 AAATTATTAAATAGA-AAT
1 AAATTATTAAA-AGATAAT
73891995 AAA
1 AAA
73891998 AATCATTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 16 0.84
19 3 0.16
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.31
Consensus pattern (18 bp):
AAATTATTAAAAGATAAT
Found at i:73895319 original size:37 final size:37
Alignment explanation
Indices: 73895260--73895400 Score: 228
Period size: 37 Copynumber: 3.8 Consensus size: 37
73895250 AGCTCAGACG
* *
73895260 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
73895297 AAATCTCCACACGTAGTCATCGGGTCTTACCCAGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
73895334 TAATCTCCACATGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
73895371 TAATCTCCACACGTAGTCATCGGGTCTTAC
1 AAATCTCCACACGTAGTCATCGGGTCTTAC
73895401 TCAGAATATA
Statistics
Matches: 97, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 97 1.00
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:73895675 original size:48 final size:48
Alignment explanation
Indices: 73895551--73895783 Score: 396
Period size: 48 Copynumber: 4.8 Consensus size: 48
73895541 GCAAATCGCC
* *
73895551 TACATATTTCACACTAGCCCTTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
73895601 TATATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
73895649 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
73895697 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
73895745 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
73895784 TGCATGTTCA
Statistics
Matches: 175, Mismatches: 6, Indels: 6
0.94 0.03 0.03
Matches are distributed among these distances:
48 132 0.75
49 2 0.01
50 41 0.23
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:73895832 original size:47 final size:47
Alignment explanation
Indices: 73895753--73895946 Score: 280
Period size: 47 Copynumber: 4.1 Consensus size: 47
73895743 CATACATATT
* * * *
73895753 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
73895800 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
73895847 TCACATTGGCCATTCGGCCTTATCACATGTATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
73895894 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
73895941 TCACAT
1 TCACAT
73895947 AAAATCCTAA
Statistics
Matches: 131, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 131 1.00
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:73895873 original size:22 final size:22
Alignment explanation
Indices: 73895846--73895917 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
73895836 GCTCACATTC
73895846 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
73895868 ATCACATGTATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
73895892 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
73895915 ATC
1 ATC
73895918 TCATATATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.22, C:0.29, G:0.15, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:73895880 original size:94 final size:94
Alignment explanation
Indices: 73895657--73895946 Score: 286
Period size: 94 Copynumber: 3.1 Consensus size: 94
73895647 CATACATATT
* * ** *
73895657 TCACATTAGCCATTCGGCTTTACCACATATA--CATATCTCATACATAT-TTCACATTAGCCATT
1 TCACATTAGCCATTCGGCCTTACCACATATATGCATGT-TC--ACAT-TCACCACATTGGCCATT
* * *
73895719 CGGCTTTA-C-CACATATACATATCTCATACATAT-T
62 CGGCCTTATCACACATATACACA-CTC--ACAT-TCA
* *
73895753 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGC
1 TCACATTAGCCATTCGGCCTTACCACATATATGCATGTTCACATTCACCACATTGGCCATTCGGC
* **
73895818 CTTATCACACATATGCATGCTCACATTCA
66 CTTATCACACATATACACACTCACATTCA
* * * *
73895847 TCACATTGGCCATTCGGCCTTATCACATGTATGCATGTTCACATTCATCACATTGGCCATTCGGC
1 TCACATTAGCCATTCGGCCTTACCACATATATGCATGTTCACATTCACCACATTGGCCATTCGGC
* * *
73895912 CTTATCTCATATATACACATTCACATTCA
66 CTTATCACACATATACACACTCACATTCA
73895941 TCACAT
1 TCACAT
73895947 AAAATCCTAA
Statistics
Matches: 167, Mismatches: 21, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
93 1 0.01
94 93 0.56
95 22 0.13
96 35 0.21
97 12 0.07
98 4 0.02
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.34
Consensus pattern (94 bp):
TCACATTAGCCATTCGGCCTTACCACATATATGCATGTTCACATTCACCACATTGGCCATTCGGC
CTTATCACACATATACACACTCACATTCA
Found at i:73900486 original size:47 final size:47
Alignment explanation
Indices: 73900417--73900509 Score: 177
Period size: 47 Copynumber: 2.0 Consensus size: 47
73900407 GGATGAGTAG
73900417 GATTTCCGATTACATTACTATTGCTATTACTGAAATGGGCTAAGGCA
1 GATTTCCGATTACATTACTATTGCTATTACTGAAATGGGCTAAGGCA
*
73900464 GATTTTCGATTACATTACTATTGCTATTACTGAAATGGGCTAAGGC
1 GATTTCCGATTACATTACTATTGCTATTACTGAAATGGGCTAAGGC
73900510 CCACACTTAT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.35
Consensus pattern (47 bp):
GATTTCCGATTACATTACTATTGCTATTACTGAAATGGGCTAAGGCA
Found at i:73903782 original size:40 final size:40
Alignment explanation
Indices: 73903679--73903826 Score: 210
Period size: 40 Copynumber: 3.7 Consensus size: 40
73903669 ATGATAACCA
* * *
73903679 GGCTAAGTCCCGAAGGCATCTGCGCGAGTTACTAAATCCA
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCG
*
73903719 GGCTAAGT-CCGAAGGCATTTGTGCAAGTTACTAAATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCG
*
73903758 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTCTAA-CCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAATCCG
* *
73903798 GGCTATGTCCCGAAGGCATTTGAGCGAGT
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGT
73903827 AATTATATCC
Statistics
Matches: 98, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
39 35 0.36
40 61 0.62
41 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCG
Found at i:73903852 original size:79 final size:79
Alignment explanation
Indices: 73903679--73903838 Score: 187
Period size: 79 Copynumber: 2.0 Consensus size: 79
73903669 ATGATAACCA
* *
73903679 GGCTAAGTCCCGAAGGCATCTGCGCGAGTTACTAAATCCAGGCTAAGTCCGAAGGCATTTGTGCA
1 GGCTAAATCCCGAAGGCATCTGCGCGAGTTACTAAATCCAGGCTAAGTCCGAAGGCATTTGAGCA
*
73903744 AGTTACTAAATCCG
66 AGTAACTAAATCCG
* * * * * *
73903758 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTCTAA-CCGGGCTATGTCCCGAAGGCATTTGAG
1 GGCTAAATCCCGAAGGCATCTGCGCGAGTTACT-AAATCCAGGCTAAGT-CCGAAGGCATTTGAG
* * *
73903822 CGAGTAATTATATCCG
64 CAAGTAACTAAATCCG
73903838 G
1 G
73903839 TTAAATTCTG
Statistics
Matches: 69, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
79 40 0.58
80 29 0.42
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (79 bp):
GGCTAAATCCCGAAGGCATCTGCGCGAGTTACTAAATCCAGGCTAAGTCCGAAGGCATTTGAGCA
AGTAACTAAATCCG
Found at i:73907231 original size:40 final size:40
Alignment explanation
Indices: 73907176--73907363 Score: 288
Period size: 40 Copynumber: 4.7 Consensus size: 40
73907166 TGATAACCGA
* *
73907176 GCTAAGTCCCGAAGGCATCTGCGCGAGTTACTAAATCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGG
73907216 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGG
*
73907256 GATAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGG
* * *
73907296 GCTAAGTCCCGAAGACAATTGTGCGAGTTACTCTAA-CCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAATCCGG
* *
73907336 GCTATGTCCCGAAGGCATTTGAGCGAGT
1 GCTAAGTCCCGAAGGCATTTGTGCGAGT
73907364 AATTATATCA
Statistics
Matches: 136, Mismatches: 11, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
40 134 0.99
41 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (40 bp):
GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGG
Found at i:73910597 original size:40 final size:40
Alignment explanation
Indices: 73910539--73910715 Score: 245
Period size: 40 Copynumber: 4.5 Consensus size: 40
73910529 CGGATGATAA
* *
73910539 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
73910579 CCAGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
73910619 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
73910659 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
73910699 -C-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
73910716 TACTTGGTTG
Statistics
Matches: 126, Mismatches: 9, Indels: 6
0.89 0.06 0.04
Matches are distributed among these distances:
38 15 0.12
39 3 0.02
40 107 0.85
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:73917366 original size:40 final size:40
Alignment explanation
Indices: 73917329--73917553 Score: 264
Period size: 40 Copynumber: 5.7 Consensus size: 40
73917319 GCTACTCGTT
**
73917329 CAAATGCCTTCGGGAAATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
73917369 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
73917409 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
*
73917449 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * * *
73917489 -GAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
73917529 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
73917554 CATCATTCGA
Statistics
Matches: 168, Mismatches: 12, Indels: 10
0.88 0.06 0.05
Matches are distributed among these distances:
39 34 0.20
40 127 0.76
41 7 0.04
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:73917441 original size:80 final size:79
Alignment explanation
Indices: 73917350--73917553 Score: 295
Period size: 80 Copynumber: 2.6 Consensus size: 79
73917340 GGGAAATAGC
* *
73917350 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATG
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA-AAATG
73917415 CCTTCGGATCTTAGT
65 CCTTCGGATCTTAGT
* * *
73917430 CCGGATTTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCAGAATG
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCAAAATG
73917494 CCTTCGGATCTTAGT
65 CCTTCGGATCTTAGT
* * *
73917509 CCGGATATAGTCACTTAGCGCAAA-GCCTTCGGGACTTAGCCCGGA
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
73917554 CATCATTCGA
Statistics
Matches: 111, Mismatches: 10, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
79 50 0.45
80 61 0.55
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (79 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCAAAATGC
CTTCGGATCTTAGT
Found at i:73922995 original size:40 final size:40
Alignment explanation
Indices: 73922910--73923060 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
73922900 AATTGAATGA
* * *
73922910 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
73922950 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
73922991 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
73923030 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
73923061 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:73923074 original size:40 final size:40
Alignment explanation
Indices: 73922947--73923076 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
73922937 ATGCTGGAAA
* * * *
73922947 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
73922987 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
73923027 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
73923067 TTATATCCGG
1 TTATATCCGG
73923077 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:73929980 original size:63 final size:67
Alignment explanation
Indices: 73929902--73930086 Score: 220
Period size: 71 Copynumber: 2.7 Consensus size: 67
73929892 ACACCCTGTA
* * *
73929902 GTAGCTA-GTCACATGCGTGATAC-AGATGTA-TC-CCATGTAGAC-AGAGCTACGTGAAAGATA
1 GTAGCTAGGTCGCATGCGTGATACAAG-TGAAGACACCATGTAGACAAGAGCTACGTGAAAGATA
73929962 AAT
65 AAT
*
73929965 G-AGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGA-TACAAGTGAA-GACACCATGTAGAC-A-AGAGCTACGTGAAAG
73930029 ATAAAT
62 ATAAAT
*
73930035 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAG
1 GTAGCTAGGTCGCATGCGTGA-TACAAGTGAA-GACACCATGTAGACAAGAG
73930087 AGCTACGAGA
Statistics
Matches: 108, Mismatches: 4, Indels: 14
0.86 0.03 0.11
Matches are distributed among these distances:
62 5 0.05
63 13 0.12
64 5 0.05
65 2 0.02
66 1 0.01
67 10 0.09
69 4 0.04
70 23 0.21
71 45 0.42
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.21
Consensus pattern (67 bp):
GTAGCTAGGTCGCATGCGTGATACAAGTGAAGACACCATGTAGACAAGAGCTACGTGAAAGATAA
AT
Found at i:73930027 original size:70 final size:71
Alignment explanation
Indices: 73929944--73930093 Score: 293
Period size: 71 Copynumber: 2.1 Consensus size: 71
73929934 CCATGTAGAC
73929944 AGAGCTACGTGAAAGATAAATG-AGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTA
1 AGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTA
73930008 GACAAG
66 GACAAG
73930014 AGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTA
1 AGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTA
73930079 GACAAG
66 GACAAG
73930085 AGAGCTACG
1 AGAGCTACG
73930094 AGACAAATCG
Statistics
Matches: 79, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
70 22 0.28
71 57 0.72
ACGTcount: A:0.35, C:0.17, G:0.29, T:0.19
Consensus pattern (71 bp):
AGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTA
GACAAG
Found at i:73937432 original size:68 final size:70
Alignment explanation
Indices: 73937360--73937557 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
73937350 ACACCCTGTA
* * * *
73937360 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
73937422 ATAAAT
65 ATAAAT
*
73937428 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
73937493 ATAAAT
65 ATAAAT
*
73937499 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
73937558 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:73937471 original size:41 final size:41
Alignment explanation
Indices: 73937426--73937543 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
73937416 TGAAAGATAA
73937426 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
73937467 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
73937497 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
73937538 ATGTAG
1 ATGTAG
73937544 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:73937483 original size:71 final size:71
Alignment explanation
Indices: 73937394--73937557 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
73937384 GAGATGTATC
73937394 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
73937459 AGGACA
66 AGGACA
73937465 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
73937530 AGGACA
66 AGGACA
73937536 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
73937558 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:73945000 original size:68 final size:70
Alignment explanation
Indices: 73944928--73945125 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
73944918 ACACCCTGTA
* * * *
73944928 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
73944990 ATAAAT
65 ATAAAT
*
73944996 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
73945061 ATAAAT
65 ATAAAT
*
73945067 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
73945126 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:73945039 original size:41 final size:41
Alignment explanation
Indices: 73944994--73945111 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
73944984 TGAAAGATAA
73944994 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
73945035 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
73945065 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
73945106 ATGTAG
1 ATGTAG
73945112 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:73945051 original size:71 final size:71
Alignment explanation
Indices: 73944962--73945125 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
73944952 GAGATGTATC
73944962 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
73945027 AGGACA
66 AGGACA
73945033 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
73945098 AGGACA
66 AGGACA
73945104 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
73945126 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:73950301 original size:12 final size:12
Alignment explanation
Indices: 73950284--73950359 Score: 93
Period size: 12 Copynumber: 6.4 Consensus size: 12
73950274 TTGTCGATAG
73950284 AAGTTTATTTCT
1 AAGTTTATTTCT
73950296 AAGTTTATTTC-
1 AAGTTTATTTCT
*
73950307 -ATTATTATTTCT
1 AAGT-TTATTTCT
73950319 AAGTTTATTTCT
1 AAGTTTATTTCT
*
73950331 AAGTTTATTTCC
1 AAGTTTATTTCT
* *
73950343 CACTTTATTTCT
1 AAGTTTATTTCT
73950355 AAGTT
1 AAGTT
73950360 GTCTTTGTTT
Statistics
Matches: 53, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
10 2 0.04
11 7 0.13
12 42 0.79
13 2 0.04
ACGTcount: A:0.25, C:0.12, G:0.07, T:0.57
Consensus pattern (12 bp):
AAGTTTATTTCT
Found at i:73950330 original size:35 final size:35
Alignment explanation
Indices: 73950284--73950359 Score: 118
Period size: 35 Copynumber: 2.1 Consensus size: 35
73950274 TTGTCGATAG
*
73950284 AAGTTTATTTCTAAGTTTATTT-CATTATTATTTCT
1 AAGTTTATTTCTAAGTTTATTTCCACT-TTATTTCT
73950319 AAGTTTATTTCTAAGTTTATTTCCCACTTTATTTCT
1 AAGTTTATTTCTAAGTTTATTT-CCACTTTATTTCT
73950355 AAGTT
1 AAGTT
73950360 GTCTTTGTTT
Statistics
Matches: 38, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
35 22 0.58
36 13 0.34
37 3 0.08
ACGTcount: A:0.25, C:0.12, G:0.07, T:0.57
Consensus pattern (35 bp):
AAGTTTATTTCTAAGTTTATTTCCACTTTATTTCT
Found at i:73954296 original size:27 final size:26
Alignment explanation
Indices: 73954238--73954348 Score: 127
Period size: 27 Copynumber: 4.2 Consensus size: 26
73954228 AGGAAGCGTC
*
73954238 CTGGTGGCTATGCCACAAATTATCTGAT
1 CTGGTGGCTATGCCAC--ATTATCTGTT
*
73954266 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAT-TATCTGTT
*
73954293 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTATGCCAC-ATTATCTGT-T
*
73954321 CTGGTGACTAT--CACATTATCTGTT
1 CTGGTGGCTATGCCACATTATCTGTT
73954345 CTGG
1 CTGG
73954349 CAGCCATGCT
Statistics
Matches: 76, Mismatches: 4, Indels: 10
0.84 0.04 0.11
Matches are distributed among these distances:
24 5 0.07
25 9 0.12
26 5 0.07
27 30 0.39
28 27 0.36
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (26 bp):
CTGGTGGCTATGCCACATTATCTGTT
Found at i:73954323 original size:55 final size:52
Alignment explanation
Indices: 73954238--73954348 Score: 143
Period size: 55 Copynumber: 2.1 Consensus size: 52
73954228 AGGAAGCGTC
* *
73954238 CTGGTGGCTATGCCACAAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAAATTATCTGATCTGGTGACTAT--CACAT-TATCTGTT
* *
73954293 CTGGTGGCTCTGCCAC-GATTATCTGTATCTGGTGACTATCACATTATCTGTT
1 CTGGTGGCTATGCCACAAATTATCTG-ATCTGGTGACTATCACATTATCTGTT
73954345 CTGG
1 CTGG
73954349 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
52 12 0.24
53 5 0.10
54 8 0.16
55 26 0.51
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (52 bp):
CTGGTGGCTATGCCACAAATTATCTGATCTGGTGACTATCACATTATCTGTT
Found at i:73955662 original size:12 final size:12
Alignment explanation
Indices: 73955645--73955674 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
73955635 AAGAGCCACT
73955645 CGTGGACGAGGC
1 CGTGGACGAGGC
*
73955657 CGTGGACGTGGC
1 CGTGGACGAGGC
73955669 CGTGGA
1 CGTGGA
73955675 AGGGCTCGAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.13, C:0.23, G:0.50, T:0.13
Consensus pattern (12 bp):
CGTGGACGAGGC
Found at i:73962117 original size:27 final size:25
Alignment explanation
Indices: 73962059--73962169 Score: 107
Period size: 27 Copynumber: 4.2 Consensus size: 25
73962049 AGGAAGCGTC
*
73962059 CTGGTGGCTATGCCACAAATTATCTGAT
1 CTGGTGGCT-TGCCAC--ATTATCTGTT
*
73962087 CTGGTGCCTTTGCCACATATATCTGTT
1 CTGGTGGC-TTGCCACAT-TATCTGTT
73962114 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCT-TGCCAC-ATTATCTGT-T
* *
73962142 CTGGTGAC-TGTCACATTATCTGTT
1 CTGGTGGCTTGCCACATTATCTGTT
73962166 CTGG
1 CTGG
73962170 CAGCCATGCT
Statistics
Matches: 73, Mismatches: 5, Indels: 14
0.79 0.05 0.15
Matches are distributed among these distances:
24 5 0.07
25 9 0.12
26 8 0.11
27 27 0.37
28 23 0.32
29 1 0.01
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (25 bp):
CTGGTGGCTTGCCACATTATCTGTT
Found at i:73962144 original size:55 final size:52
Alignment explanation
Indices: 73962059--73962169 Score: 143
Period size: 55 Copynumber: 2.1 Consensus size: 52
73962049 AGGAAGCGTC
*
73962059 CTGGTGGCTATGCCACAAATTATCTGATCTGGTGCCTTTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAAATTATCTGATCTGGTGAC--TGCCACAT-TATCTGTT
* * *
73962114 CTGGTGGCTCTGCCAC-GATTATCTGTATCTGGTGACTGTCACATTATCTGTT
1 CTGGTGGCTATGCCACAAATTATCTG-ATCTGGTGACTGCCACATTATCTGTT
73962166 CTGG
1 CTGG
73962170 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
52 12 0.24
53 7 0.14
54 8 0.16
55 24 0.47
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (52 bp):
CTGGTGGCTATGCCACAAATTATCTGATCTGGTGACTGCCACATTATCTGTT
Found at i:73964901 original size:27 final size:27
Alignment explanation
Indices: 73964841--73965048 Score: 244
Period size: 27 Copynumber: 7.7 Consensus size: 27
73964831 CATACCTAAA
* *
73964841 CCCTCATGTGATAAAATAACT-ATTTTAG
1 CCCTTATGTGATAAAATGA-TGATTTT-G
* *
73964869 -CGTTATGTGATAAAATGATGACTTTG
1 CCCTTATGTGATAAAATGATGATTTTG
* *
73964895 CCCTTATGTGATAAAATGACT-CTCTTG
1 CCCTTATGTGATAAAATGA-TGATTTTG
* *
73964922 CCCTGATGTGATAAAATGACGATTTTG
1 CCCTTATGTGATAAAATGATGATTTTG
73964949 CCCTTATGTGATAAAATGATGA-TTTG
1 CCCTTATGTGATAAAATGATGATTTTG
* * *
73964975 TCCTTATGTGATAAAAGGATGATTTTT
1 CCCTTATGTGATAAAATGATGATTTTG
* *
73965002 CCCTTATGTGATAAAAGGATGATTTTT
1 CCCTTATGTGATAAAATGATGATTTTG
73965029 CCCTTATGTGATAAAATGAT
1 CCCTTATGTGATAAAATGAT
73965049 CGAAATACCT
Statistics
Matches: 156, Mismatches: 19, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
26 26 0.17
27 129 0.83
28 1 0.01
ACGTcount: A:0.31, C:0.13, G:0.18, T:0.38
Consensus pattern (27 bp):
CCCTTATGTGATAAAATGATGATTTTG
Found at i:73965026 original size:80 final size:81
Alignment explanation
Indices: 73964871--73965048 Score: 252
Period size: 80 Copynumber: 2.2 Consensus size: 81
73964861 TATTTTAGCG
* *
73964871 TTATGTGATAAAATGATGACTTTGCCCTTATGTGATAAAATGACTCTCTTGCCCTGATGTGATAA
1 TTATGTGATAAAATGATGACTTTGCCCTTATGTGATAAAAGGACTATCTTGCCCTGATGTGATAA
*
73964936 AATGACGATTTTGCCC
66 AAGGACGATTTTGCCC
* * * *
73964952 TTATGTGATAAAATGATGA-TTTGTCCTTATGTGATAAAAGGA-TGATTTTTCCCTTATGTGATA
1 TTATGTGATAAAATGATGACTTTGCCCTTATGTGATAAAAGGACT-ATCTTGCCCTGATGTGATA
* *
73965015 AAAGGATGATTTTTCCC
65 AAAGGACGATTTTGCCC
73965032 TTATGTGATAAAATGAT
1 TTATGTGATAAAATGAT
73965049 CGAAATACCT
Statistics
Matches: 87, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
79 1 0.01
80 67 0.77
81 19 0.22
ACGTcount: A:0.30, C:0.12, G:0.19, T:0.39
Consensus pattern (81 bp):
TTATGTGATAAAATGATGACTTTGCCCTTATGTGATAAAAGGACTATCTTGCCCTGATGTGATAA
AAGGACGATTTTGCCC
Found at i:73965070 original size:27 final size:27
Alignment explanation
Indices: 73965040--73965113 Score: 112
Period size: 27 Copynumber: 2.7 Consensus size: 27
73965030 CCTTATGTGA
** *
73965040 TAAAATGATCGAAATACCTTCATAGGG
1 TAAAATGATCGAAATACCCCCACAGGG
73965067 TAAAATGATCGAAATACCCCCACAGGG
1 TAAAATGATCGAAATACCCCCACAGGG
*
73965094 TAGAATGATCGAAATACCCC
1 TAAAATGATCGAAATACCCC
73965114 TGTAGGATAA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.41, C:0.22, G:0.18, T:0.20
Consensus pattern (27 bp):
TAAAATGATCGAAATACCCCCACAGGG
Found at i:73965127 original size:27 final size:27
Alignment explanation
Indices: 73965038--73965128 Score: 103
Period size: 27 Copynumber: 3.4 Consensus size: 27
73965028 TCCCTTATGT
*
73965038 GATAAAATGATCGAAATA-CCTTCATAG
1 GATAAAATGATCGAAATACCCCT-ATAG
* * *
73965065 GGTAAAATGATCGAAATACCCCCACAG
1 GATAAAATGATCGAAATACCCCTATAG
* * *
73965092 GGTAGAATGATCGAAATACCCCTGTAG
1 GATAAAATGATCGAAATACCCCTATAG
73965119 GATAAAATGA
1 GATAAAATGA
73965129 CTATAATACC
Statistics
Matches: 53, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
27 51 0.96
28 2 0.04
ACGTcount: A:0.42, C:0.18, G:0.20, T:0.21
Consensus pattern (27 bp):
GATAAAATGATCGAAATACCCCTATAG
Found at i:73980545 original size:17 final size:18
Alignment explanation
Indices: 73980503--73980551 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
73980493 AGTTGAAAAG
73980503 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
73980522 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
73980539 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
73980552 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:73981439 original size:40 final size:40
Alignment explanation
Indices: 73981373--73981523 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
73981363 AAATTGAATG
* * *
73981373 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
73981412 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
73981452 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
73981492 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
73981524 ACTTGATTAT
Statistics
Matches: 91, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 16 0.18
40 73 0.80
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:73981537 original size:40 final size:40
Alignment explanation
Indices: 73981409--73981539 Score: 149
Period size: 40 Copynumber: 3.3 Consensus size: 40
73981399 TATGCTGGAA
* * * *
73981409 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGATTG
** * *
73981449 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTT-
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-TTG
*
73981489 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACTTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-TTG
73981529 ATTATATCCGG
1 ATTATATCCGG
73981540 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
39 3 0.04
40 70 0.95
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGATTG
Found at i:73988558 original size:17 final size:18
Alignment explanation
Indices: 73988516--73988564 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
73988506 AGTTGAAAAG
73988516 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
73988535 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
73988552 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
73988565 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:73989447 original size:40 final size:40
Alignment explanation
Indices: 73989381--73989531 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
73989371 AAATTGAATG
* * *
73989381 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
73989420 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
73989460 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
73989500 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
73989532 ACTTGATTAT
Statistics
Matches: 91, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 16 0.18
40 73 0.80
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:73989545 original size:40 final size:40
Alignment explanation
Indices: 73989417--73989547 Score: 149
Period size: 40 Copynumber: 3.3 Consensus size: 40
73989407 TATGCTGGAA
* * * *
73989417 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGATTG
** * *
73989457 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTT-
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-TTG
*
73989497 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACTTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-TTG
73989537 ATTATATCCGG
1 ATTATATCCGG
73989548 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
39 3 0.04
40 70 0.95
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGATTG
Found at i:73997262 original size:28 final size:28
Alignment explanation
Indices: 73997204--73997299 Score: 104
Period size: 28 Copynumber: 3.4 Consensus size: 28
73997194 ACAAATTGGT
** * *
73997204 ACTAAGTGTGCGGGTTCAAATTATACAGC
1 ACTAAGTGTGCAAGTTC-GATTATATAGC
*
73997233 ACTAAGTGTGCAAGTTTGATTATATAGC
1 ACTAAGTGTGCAAGTTCGATTATATAGC
* *
73997261 ACTAAGTGTGCGAGTTCGACTAT-TAAGC
1 ACTAAGTGTGCAAGTTCGATTATAT-AGC
73997289 ACTAAGTGTGC
1 ACTAAGTGTGC
73997300 GGGCTTATTG
Statistics
Matches: 58, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.74
29 14 0.24
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
ACTAAGTGTGCAAGTTCGATTATATAGC
Found at i:74006949 original size:31 final size:31
Alignment explanation
Indices: 74006908--74006971 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
74006898 CCTTTTCATA
*
74006908 TTTCATATTTCATAACACTAGGCCGAAGCCT
1 TTTCAAATTTCATAACACTAGGCCGAAGCCT
** *
74006939 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTAGGCCGAAGCCT
74006970 TT
1 TT
74006972 ACGGTAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTAGGCCGAAGCCT
Found at i:74007217 original size:24 final size:24
Alignment explanation
Indices: 74007165--74007354 Score: 260
Period size: 24 Copynumber: 8.0 Consensus size: 24
74007155 GCTTTATCAT
*
74007165 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
74007190 ATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
74007214 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
74007237 ATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
* *
74007261 ATAATTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
74007285 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
74007309 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
74007332 ATAACTAGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
74007355 TCACTTCCTC
Statistics
Matches: 150, Mismatches: 12, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
23 42 0.28
24 96 0.64
25 12 0.08
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:74007241 original size:47 final size:48
Alignment explanation
Indices: 74007164--74007355 Score: 273
Period size: 47 Copynumber: 4.0 Consensus size: 48
74007154 TGCTTTATCA
* *
74007164 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTT
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTT
*
74007213 TATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCGTAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
* * *
74007260 GATAATTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
* *
74007308 GATAACTGGGGCATAAGCCC-TTTAATAACTAGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
74007355 T
1 T
74007356 CACTTCCTCC
Statistics
Matches: 130, Mismatches: 11, Indels: 6
0.88 0.07 0.04
Matches are distributed among these distances:
47 68 0.52
48 49 0.38
49 13 0.10
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30
Consensus pattern (48 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
Found at i:74007313 original size:95 final size:96
Alignment explanation
Indices: 74007179--74007354 Score: 300
Period size: 95 Copynumber: 1.8 Consensus size: 96
74007169 CTGGAGGCCT
* *
74007179 AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATAAGCCCTTTAATAACTG
1 AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTA
*
74007244 GGGCGTAAGCCCTTTTGATAATTGGGGCATA
66 GGGCATAAGCCCTTTTGATAATTGGGGCATA
* *
74007275 AGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTA
1 AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTA
74007339 GGGCATAAGCCCTTTT
66 GGGCATAAGCCCTTTT
74007355 TCACTTCCTC
Statistics
Matches: 75, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
95 71 0.95
96 4 0.05
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30
Consensus pattern (96 bp):
AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTA
GGGCATAAGCCCTTTTGATAATTGGGGCATA
Found at i:74007432 original size:20 final size:20
Alignment explanation
Indices: 74007409--74007515 Score: 196
Period size: 20 Copynumber: 5.3 Consensus size: 20
74007399 GAACATCTCG
74007409 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
74007429 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
*
74007449 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
74007469 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
74007489 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
74007509 TGTGCAT
1 TGTGCAT
74007516 CAAAATCCCA
Statistics
Matches: 85, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
20 85 1.00
ACGTcount: A:0.32, C:0.20, G:0.13, T:0.36
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:74008852 original size:27 final size:27
Alignment explanation
Indices: 74008831--74009036 Score: 229
Period size: 27 Copynumber: 7.7 Consensus size: 27
74008821 AAGGGTATTT
*
74008831 TAGTAATTTTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* * * *
74008858 CAGCAATTCTGTAAATCAAAGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
*
74008885 TAGTAATTCTATAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
*
74008912 TGGTAATTCTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
**
74008939 CGGTAATTCTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
*
74008966 T-GATAATTATGTAAATCTG-GGGTAAAA
1 TAG-TAATTCTGTAAATC-GAGGGTAAAA
* * *
74008993 TGGTAATTATGTAAAT-TAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
** *
74009019 CGGTAATTCTATAAATCG
1 TAGTAATTCTGTAAATCG
74009037 GGAGTACTTT
Statistics
Matches: 154, Mismatches: 20, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
26 22 0.14
27 130 0.84
28 2 0.01
ACGTcount: A:0.41, C:0.08, G:0.21, T:0.30
Consensus pattern (27 bp):
TAGTAATTCTGTAAATCGAGGGTAAAA
Found at i:74008919 original size:81 final size:81
Alignment explanation
Indices: 74008833--74009035 Score: 277
Period size: 81 Copynumber: 2.5 Consensus size: 81
74008823 GGGTATTTTA
* * * *
74008833 GTAATTTTGTAAATCGAGGGTAAAACAGCAATTCTGTAAATCAAAGGTAAAAT-AGTAATTCTAT
1 GTAATTATGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAAGGTAAAATGA-TAATTATAT
74008897 AAATC-GAGGGTAAAATG
65 AAATCTG-GGGTAAAATG
* * * *
74008914 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGATAATTATGTA
1 GTAATTATGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAAGGTAAAATGATAATTATATA
74008979 AATCTGGGGTAAAATG
66 AATCTGGGGTAAAATG
* *
74008995 GTAATTATGTAAAT-TAGGGTAAAACGGTAATTCTATAAATC
1 GTAATTATGTAAATCGAGGGTAAAACGGTAATTCTGTAAATC
74009036 GGGAGTACTT
Statistics
Matches: 110, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
80 25 0.23
81 83 0.75
82 2 0.02
ACGTcount: A:0.41, C:0.08, G:0.21, T:0.30
Consensus pattern (81 bp):
GTAATTATGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAAGGTAAAATGATAATTATATA
AATCTGGGGTAAAATG
Found at i:74012634 original size:2 final size:2
Alignment explanation
Indices: 74012627--74012667 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
74012617 TTTGGCCACA
74012627 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
74012668 CACATCTCAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:74022060 original size:24 final size:24
Alignment explanation
Indices: 74022028--74022090 Score: 126
Period size: 24 Copynumber: 2.6 Consensus size: 24
74022018 AATCTCAAAT
74022028 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
74022052 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
74022076 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
74022091 ACATAATAAG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.21, C:0.17, G:0.27, T:0.35
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:74024379 original size:39 final size:39
Alignment explanation
Indices: 74024316--74024468 Score: 234
Period size: 39 Copynumber: 3.9 Consensus size: 39
74024306 AAATGTTCGA
* * *
74024316 GTGATATCCGGGCTAAGCCTGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
74024355 GTGACATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
74024394 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* *
74024433 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
74024469 GGTTACCATA
Statistics
Matches: 104, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 87 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.24
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
Found at i:74024499 original size:40 final size:39
Alignment explanation
Indices: 74024317--74024487 Score: 225
Period size: 39 Copynumber: 4.4 Consensus size: 39
74024307 AATGTTCGAG
* * * *
74024317 TGATATCCGGGCTAAGCCTGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
74024356 TGACATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
74024395 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
74024434 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** *
74024474 CCATAACCGGGCTA
1 TGATATCCGGGCTA
74024488 TGTCCCAAAG
Statistics
Matches: 116, Mismatches: 15, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 86 0.74
40 30 0.26
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:74028403 original size:40 final size:39
Alignment explanation
Indices: 74028346--74028530 Score: 226
Period size: 40 Copynumber: 4.6 Consensus size: 39
74028336 ATTAAATGAT
* * *
74028346 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
* * * *
74028386 ATCCGGGTTAAGACCCGAAGGCAATTATGCTAGTGACTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTG-TTAA
*
74028426 ATCCGGGCTAAGACCCGAAGGCATTCATGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAG-TGTTAA
* * **
74028466 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCT
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
74028506 ATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATT
74028531 CGTGCATGTG
Statistics
Matches: 126, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
39 2 0.02
40 122 0.97
41 2 0.02
ACGTcount: A:0.29, C:0.23, G:0.25, T:0.24
Consensus pattern (39 bp):
ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTGTTAA
Found at i:74028482 original size:80 final size:80
Alignment explanation
Indices: 74028345--74028551 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
74028335 AATTAAATGA
* * * * *
74028345 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAAATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCATGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
*
74028410 TTATGCTAGT-G-AC
66 TTATGCAAGTCGTAC
* *
74028423 TAAATCCGGGCTAAGACCCGAAGGCATTCATGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCATGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGC
* * *
74028488 ATTTGTGCAAGTCGTTC
64 AATTATGCAAGTCGTAC
* * * *
74028505 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCATGCAAGTAGTTAAATCCGG
74028552 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 15, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
78 1 0.01
80 106 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCATGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
TTATGCAAGTCGTAC
Found at i:74028536 original size:40 final size:39
Alignment explanation
Indices: 74028344--74028551 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 39
74028334 CAATTAAATG
* * * *
74028344 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCATGCAAGT-GTT
* * * *
74028384 AAATCCGGGTTAAGACCCGAAGGCAATT-ATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCATGCAAGTG-TT
*
74028424 AAATCCGGGCTAAGACCCGAAGGCATTCATGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCATGCAAG-TGTT
* * **
74028464 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCATGCAAGT-GTT
* * *
74028504 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCATGCAAGT-GTT
74028544 ATATCCGG
1 ATATCCGG
74028552 TTGTATTCCG
Statistics
Matches: 145, Mismatches: 18, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
39 5 0.03
40 135 0.93
41 5 0.03
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCATGCAAGTGTT
Found at i:74036360 original size:40 final size:39
Alignment explanation
Indices: 74036303--74036508 Score: 232
Period size: 40 Copynumber: 5.2 Consensus size: 39
74036293 ATTAAATGAT
* * * *
74036303 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-GTTAA
* * * *
74036343 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTG-TTAA
*
74036383 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAG-TGTTAA
* **
74036423 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-GTTAA
* * *
74036463 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-GTTAA
74036503 ATCCGG
1 ATCCGG
74036509 TTGTATTCCG
Statistics
Matches: 143, Mismatches: 20, Indels: 6
0.85 0.12 0.04
Matches are distributed among these distances:
39 2 0.01
40 139 0.97
41 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGTTAA
Found at i:74036439 original size:80 final size:80
Alignment explanation
Indices: 74036302--74036508 Score: 256
Period size: 80 Copynumber: 2.6 Consensus size: 80
74036292 AATTAAATGA
* * ** * *
74036302 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAAATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
*
74036367 TTGTGCTAGT-G-AC
66 TTGTGCAAGTCGTAC
* *
74036380 TAAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGC
* *
74036445 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* * *
74036462 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGG
74036509 TTGTATTCCG
Statistics
Matches: 111, Mismatches: 14, Indels: 6
0.85 0.11 0.05
Matches are distributed among these distances:
78 1 0.01
80 107 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:74043572 original size:80 final size:80
Alignment explanation
Indices: 74043488--74043636 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
74043478 TATGGTAACC
* * * *
74043488 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
74043552 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
74043568 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
74043633 CCGG
66 CCGG
74043637 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:74043578 original size:40 final size:38
Alignment explanation
Indices: 74043529--74043636 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
74043519 ATCACGATTT
*
74043529 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
74043569 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
74043609 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
74043637 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:74046477 original size:40 final size:40
Alignment explanation
Indices: 74046383--74046595 Score: 162
Period size: 40 Copynumber: 5.3 Consensus size: 40
74046373 GTGTCTGGGC
* * *
74046383 TAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGT
1 TAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGT
* * * * * *
74046424 CAATTTCCAAAGGCATTTGTGCGAGTTACCAAAACCGGGT
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGT
* **
74046464 TAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGCC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGT
* * * *
74046504 TAATTCCCGAAGGCAATTGTGCGAATCACTATAA-CCGGG-
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGT
* * * * * * *
74046543 CAATGTCCCGAAGACAATCGAGCGAGTCACTATATCC-GGT
1 TAA-GTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGT
*
74046583 TAAATCCCGAAGG
1 TAAGTCCCGAAGG
74046596 TACGTGATTC
Statistics
Matches: 134, Mismatches: 34, Indels: 10
0.75 0.19 0.06
Matches are distributed among these distances:
39 13 0.10
40 102 0.76
41 19 0.14
ACGTcount: A:0.29, C:0.24, G:0.24, T:0.23
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGT
Found at i:74046517 original size:80 final size:78
Alignment explanation
Indices: 74046383--74046595 Score: 201
Period size: 80 Copynumber: 2.7 Consensus size: 78
74046373 GTGTCTGGGC
* * * * * * * *
74046383 TAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTTCCAAAGGCATTTGTGCGA
1 TAAGTCCCGAAGGCATTCGTGC-GAGTCACTAAATCCGGCT-AATTCCCGAAGGCAATTGTGCGA
* *
74046448 GTTACCAAAACCGGG
64 ATCACCAAAACCGGG
*
74046463 TTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGCCTAATTCCCGAAGGCAATTGTGCGA
1 -TAAGTCCCGAAGGCATTCGTGCGAGTCACTAAATCCGG-CTAATTCCCGAAGGCAATTGTGCGA
* *
74046528 ATCACTATAACCGGG
64 ATCACCAAAACCGGG
* * * * * * *
74046543 CAATGTCCCGAAGACAATCGAGCGAGTCACTATATCCGGTTAAATCCCGAAGG
1 TAA-GTCCCGAAGGCATTCGTGCGAGTCACTAAATCCGGCTAATTCCCGAAGG
74046596 TACGTGATTC
Statistics
Matches: 110, Mismatches: 20, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
79 14 0.13
80 75 0.68
81 21 0.19
ACGTcount: A:0.29, C:0.24, G:0.24, T:0.23
Consensus pattern (78 bp):
TAAGTCCCGAAGGCATTCGTGCGAGTCACTAAATCCGGCTAATTCCCGAAGGCAATTGTGCGAAT
CACCAAAACCGGG
Found at i:74053244 original size:40 final size:40
Alignment explanation
Indices: 74053170--74053347 Score: 182
Period size: 40 Copynumber: 4.5 Consensus size: 40
74053160 GAGTCACGTA
** *
74053170 CCTTCGGGAT-TTAA-CCGGATATAACCACAAGCACAATTG
1 CCTTCGGG-TCTTAACCCGGATATAATAACTAGCACAATTG
* * *
74053209 CCTTCGGGTCTTAACCCGGATTTAGTAACTTGCACAATTG
1 CCTTCGGGTCTTAACCCGGATATAATAACTAGCACAATTG
* *
74053249 CCTTCGGGTCTTAACCCGGATATAACAACTCGCACGAA-TG
1 CCTTCGGGTCTTAACCCGGATATAATAACTAGCAC-AATTG
* * * * *
74053289 CCTTCGGGTCTTAGCTCGGATATAATCACTAGCATAAATG
1 CCTTCGGGTCTTAACCCGGATATAATAACTAGCACAATTG
* *
74053329 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGTCTTAACCCGG
74053348 GTATCATTCA
Statistics
Matches: 117, Mismatches: 18, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
38 1 0.01
39 14 0.12
40 100 0.85
41 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CCTTCGGGTCTTAACCCGGATATAATAACTAGCACAATTG
Found at i:74056633 original size:305 final size:305
Alignment explanation
Indices: 74056082--74056694 Score: 1226
Period size: 305 Copynumber: 2.0 Consensus size: 305
74056072 CATATTTAAC
74056082 TTTGGAAAATCATTAAAAATTGTATAAAAATACTTGAGGGTTAAAATTTATATTTTTAATTTCTT
1 TTTGGAAAATCATTAAAAATTGTATAAAAATACTTGAGGGTTAAAATTTATATTTTTAATTTCTT
74056147 AATGAGTATAATTTCAATAGAAATAAATGGGAACATCATCCGAATCCCGTACTAATAGATAATTA
66 AATGAGTATAATTTCAATAGAAATAAATGGGAACATCATCCGAATCCCGTACTAATAGATAATTA
74056212 GTGAAGAAAGGTCAAAATTGTCAAATAGCAAAACAGGGACGAACTTGAAGAATTAACTGTACTTA
131 GTGAAGAAAGGTCAAAATTGTCAAATAGCAAAACAGGGACGAACTTGAAGAATTAACTGTACTTA
74056277 TTGGCTAATCCATAAATTCTAAAAATTTTATGGTAGGAAGATATTTGAGTCTAGTTTTGAAAAAT
196 TTGGCTAATCCATAAATTCTAAAAATTTTATGGTAGGAAGATATTTGAGTCTAGTTTTGAAAAAT
74056342 CAAGCGGATCTTAATTTAGAGTTCTGTAGCTCAAGATATAAATAA
261 CAAGCGGATCTTAATTTAGAGTTCTGTAGCTCAAGATATAAATAA
74056387 TTTGGAAAATCATTAAAAATTGTATAAAAATACTTGAGGGTTAAAATTTATATTTTTAATTTCTT
1 TTTGGAAAATCATTAAAAATTGTATAAAAATACTTGAGGGTTAAAATTTATATTTTTAATTTCTT
74056452 AATGAGTATAATTTCAATAGAAATAAATGGGAACATCATCCGAATCCCGTACTAATAGATAATTA
66 AATGAGTATAATTTCAATAGAAATAAATGGGAACATCATCCGAATCCCGTACTAATAGATAATTA
74056517 GTGAAGAAAGGTCAAAATTGTCAAATAGCAAAACAGGGACGAACTTGAAGAATTAACTGTACTTA
131 GTGAAGAAAGGTCAAAATTGTCAAATAGCAAAACAGGGACGAACTTGAAGAATTAACTGTACTTA
74056582 TTGGCTAATCCATAAATTCTAAAAATTTTATGGTAGGAAGATATTTGAGTCTAGTTTTGAAAAAT
196 TTGGCTAATCCATAAATTCTAAAAATTTTATGGTAGGAAGATATTTGAGTCTAGTTTTGAAAAAT
74056647 CAAGCGGATCTTAATTTAGAGTTCTGTAGCTCAAGATATAAATAA
261 CAAGCGGATCTTAATTTAGAGTTCTGTAGCTCAAGATATAAATAA
74056692 TTT
1 TTT
74056695 AGCGACCTTG
Statistics
Matches: 308, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
305 308 1.00
ACGTcount: A:0.41, C:0.10, G:0.16, T:0.33
Consensus pattern (305 bp):
TTTGGAAAATCATTAAAAATTGTATAAAAATACTTGAGGGTTAAAATTTATATTTTTAATTTCTT
AATGAGTATAATTTCAATAGAAATAAATGGGAACATCATCCGAATCCCGTACTAATAGATAATTA
GTGAAGAAAGGTCAAAATTGTCAAATAGCAAAACAGGGACGAACTTGAAGAATTAACTGTACTTA
TTGGCTAATCCATAAATTCTAAAAATTTTATGGTAGGAAGATATTTGAGTCTAGTTTTGAAAAAT
CAAGCGGATCTTAATTTAGAGTTCTGTAGCTCAAGATATAAATAA
Found at i:74059248 original size:40 final size:40
Alignment explanation
Indices: 74059191--74059290 Score: 146
Period size: 40 Copynumber: 2.5 Consensus size: 40
74059181 CTATCTCAGT
* *
74059191 ATCGCATACATAGTGCCTCAAATAGCAGAAGCTATTTTGA
1 ATCGCACACTTAGTGCCTCAAATAGCAGAAGCTATTTTGA
* * * *
74059231 ATTGCACACTTAGTGCCTTATATAGCCGAAGCTATTTTGA
1 ATCGCACACTTAGTGCCTCAAATAGCAGAAGCTATTTTGA
74059271 ATCGCACACTTAGTGCCTCA
1 ATCGCACACTTAGTGCCTCA
74059291 TACCATTGAT
Statistics
Matches: 52, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 52 1.00
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (40 bp):
ATCGCACACTTAGTGCCTCAAATAGCAGAAGCTATTTTGA
Found at i:74063852 original size:48 final size:48
Alignment explanation
Indices: 74063780--74064041 Score: 350
Period size: 48 Copynumber: 5.5 Consensus size: 48
74063770 TGTGTAACCA
* * * * * *
74063780 TGTAAGACCATATCTAGGATATGGCATCGACATTATTATGTGATCCCA-
1 TGTAAGACCATGTCTGGGACATGGCATCGACATTGTTACGTGA-GCCAG
** *
74063828 CATAAGACCATGTCTGGGACATGGCATCGACATTGTTATGTGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGACATTGTTACGTGAGCCAG
*
74063876 TGTAAGACCATGTCTGGGACATGGCATC-AGCATTTTTACGTGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGA-CATTGTTACGTGAGCCAG
*
74063924 TGTAAGACCATGTCTGGGACATGGCATCGACATTGTTACATGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGACATTGTTACGTGAGCCAG
* * *
74063972 TGTAAGACCATGTCTGGGACATGGCATC-AGCATCGTTATGTGAGCGAG
1 TGTAAGACCATGTCTGGGACATGGCATCGA-CATTGTTACGTGAGCCAG
74064020 TGTAAGACCATGTCTGGGACAT
1 TGTAAGACCATGTCTGGGACAT
74064042 AGCACTGGCA
Statistics
Matches: 193, Mismatches: 17, Indels: 8
0.89 0.08 0.04
Matches are distributed among these distances:
47 5 0.03
48 187 0.97
49 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCGACATTGTTACGTGAGCCAG
Found at i:74064040 original size:144 final size:144
Alignment explanation
Indices: 74063780--74064041 Score: 393
Period size: 144 Copynumber: 1.8 Consensus size: 144
74063770 TGTGTAACCA
* **
74063780 TGTAAGACCATATCTAGGATATGGCATCGACATTATTATGTGATCCCACATAAGACCATGTCTGG
1 TGTAAGACCATATCTAGGACATGGCATCGACATTATTACATGATCCCACATAAGACCATGTCTGG
*
74063845 GACATGGCATCGACATTGTTATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATT
66 GACATGGCATCGACATCGTTATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATT
74063910 TTTACGTGAGCCAG
131 TTTACGTGAGCCAG
* * * * **
74063924 TGTAAGACCATGTCTGGGACATGGCATCGACATTGTTACATGA-GCCAGTGTAAGACCATGTCTG
1 TGTAAGACCATATCTAGGACATGGCATCGACATTATTACATGATCCCA-CATAAGACCATGTCTG
*
74063988 GGACATGGCATC-AGCATCGTTATGTGAGCGAGTGTAAGACCATGTCTGGGACAT
65 GGACATGGCATCGA-CATCGTTATGTGAGCCAGTGTAAGACCATGTCTGGGACAT
74064042 AGCACTGGCA
Statistics
Matches: 105, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
143 4 0.04
144 101 0.96
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (144 bp):
TGTAAGACCATATCTAGGACATGGCATCGACATTATTACATGATCCCACATAAGACCATGTCTGG
GACATGGCATCGACATCGTTATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATT
TTTACGTGAGCCAG
Found at i:74064517 original size:117 final size:117
Alignment explanation
Indices: 74064311--74064524 Score: 419
Period size: 117 Copynumber: 1.8 Consensus size: 117
74064301 TTTGGTAAGA
74064311 ATGTAAATGAGTAAGTCCTACCTATGAAAATGATCTTGTGATGACCTTGTGATTATAAGTCTATA
1 ATGTAAATGAGTAAGTCCTACCTATGAAAATGATCTTGTGATGACCTTGTGATTATAAGTCTATA
*
74064376 CTTATGATGTATAAATAAGTGGTAAATTTGATAAGTTTAAGTTTTTTTGTTG
66 CTTATGATGTATAAATAACTGGTAAATTTGATAAGTTTAAGTTTTTTTGTTG
74064428 ATGTAAATGAGTAAGTCCTACCTATGAAAATGATCTTGTGATGACCTTGTGATTATAAGTCTATA
1 ATGTAAATGAGTAAGTCCTACCTATGAAAATGATCTTGTGATGACCTTGTGATTATAAGTCTATA
74064493 CTTATGATGTATAAATAACTGGTAAATTTGAT
66 CTTATGATGTATAAATAACTGGTAAATTTGAT
74064525 TGATGATCAT
Statistics
Matches: 96, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
117 96 1.00
ACGTcount: A:0.34, C:0.09, G:0.18, T:0.39
Consensus pattern (117 bp):
ATGTAAATGAGTAAGTCCTACCTATGAAAATGATCTTGTGATGACCTTGTGATTATAAGTCTATA
CTTATGATGTATAAATAACTGGTAAATTTGATAAGTTTAAGTTTTTTTGTTG
Found at i:74066101 original size:22 final size:22
Alignment explanation
Indices: 74066073--74066116 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
74066063 GCTAGTGTAA
74066073 GACATGTCTGGGACATGGCATC
1 GACATGTCTGGGACATGGCATC
74066095 GACATGTCTGGGACATGGCATC
1 GACATGTCTGGGACATGGCATC
74066117 AGCATTGAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.23, C:0.23, G:0.32, T:0.23
Consensus pattern (22 bp):
GACATGTCTGGGACATGGCATC
Found at i:74085760 original size:43 final size:43
Alignment explanation
Indices: 74085692--74085807 Score: 180
Period size: 43 Copynumber: 2.7 Consensus size: 43
74085682 CTGAACTCAT
* * *
74085692 TCACCTGCATTA-CGCCTGCTAGGCTCGAAGCCTGATATTAAC
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGCCTAATATTAAC
*
74085734 TCACCGGCATTATAGTCTGCTAGGCTCGAAGCCTAATATTAAC
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGCCTAATATTAAC
*
74085777 TCACCGGCATTATAGCCTGCTAGGCTAGAAG
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAG
74085808 GCCCGAATAG
Statistics
Matches: 67, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
42 11 0.16
43 56 0.84
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (43 bp):
TCACCGGCATTATAGCCTGCTAGGCTCGAAGCCTAATATTAAC
Found at i:74088364 original size:10 final size:9
Alignment explanation
Indices: 74088340--74088370 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
74088330 TTCAAAGATC
74088340 TCAAAAACA
1 TCAAAAACA
74088349 TCAAAAACA
1 TCAAAAACA
74088358 TCAAAAACTA
1 TCAAAAAC-A
74088368 TCA
1 TCA
74088371 CCAAAATGAC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 17 0.81
10 4 0.19
ACGTcount: A:0.61, C:0.23, G:0.00, T:0.16
Consensus pattern (9 bp):
TCAAAAACA
Found at i:74088763 original size:22 final size:21
Alignment explanation
Indices: 74088729--74088771 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 21
74088719 TTTTTTCTCT
*
74088729 CATTTTGTCTCTTGCTAAACAC
1 CATTTTGTCTCTT-CAAAACAC
* *
74088751 CATTTTTTTTCTTCAAAACAC
1 CATTTTGTCTCTTCAAAACAC
74088772 ATGGTCTGCC
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.26, C:0.26, G:0.05, T:0.44
Consensus pattern (21 bp):
CATTTTGTCTCTTCAAAACAC
Found at i:74088822 original size:66 final size:66
Alignment explanation
Indices: 74088719--74088852 Score: 191
Period size: 66 Copynumber: 2.0 Consensus size: 66
74088709 TTTAACAAAA
* * *
74088719 TTTTTTCTCTCATTTTGTCTCTTGCTAAACACCATTTTT-TTTCTTCAAAACACATGGTCTGC-C
1 TTTTTTCTCTCATTTTCTCTCTTACCAAACACCATTTTTCTTT-TTCAAAACACATGGTCTGCTC
74088782 AT
65 AT
* *
74088784 TTTTTTCCTCTCATTTTCTCTCTTACCAAACACCATTTTTCTTTTTCAAAACATATGGTTTGCTC
1 TTTTTT-CTCTCATTTTCTCTCTTACCAAACACCATTTTTCTTTTTCAAAACACATGGTCTGCTC
74088849 AT
65 AT
74088851 TT
1 TT
74088853 CATTTACAAG
Statistics
Matches: 61, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
65 6 0.10
66 47 0.77
67 8 0.13
ACGTcount: A:0.20, C:0.25, G:0.06, T:0.49
Consensus pattern (66 bp):
TTTTTTCTCTCATTTTCTCTCTTACCAAACACCATTTTTCTTTTTCAAAACACATGGTCTGCTCA
T
Found at i:74096874 original size:50 final size:50
Alignment explanation
Indices: 74096758--74096902 Score: 159
Period size: 50 Copynumber: 2.9 Consensus size: 50
74096748 ACATAATTAG
* * * * * * *
74096758 ATGCCAATGCCATATCCTAGATATGGTCTTACATGGCATCAC-CA-CTCG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCATATCTCA
* * * *
74096806 ATGTCAATGTCATGTCCCAAACATGGTCTTACATGGGATCTCATATGTCA
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCATATCTCA
* *
74096856 ATGCCAATGCCATGTCCCAGACATGGTATTACATGAGATCTCATATC
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCATATC
74096903 AACGCCATAT
Statistics
Matches: 78, Mismatches: 17, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
48 34 0.44
49 1 0.01
50 43 0.55
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.29
Consensus pattern (50 bp):
ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCATATCTCA
Found at i:74099630 original size:56 final size:56
Alignment explanation
Indices: 74099570--74099723 Score: 247
Period size: 56 Copynumber: 2.8 Consensus size: 56
74099560 TCCCAGACAG
* *
74099570 GGTCTTACTCGCACACATATATCGAAGTCACATATCAATGCCAACGTATAAAACGT
1 GGTCTTACTCGCACACATATATCGAAGTCACATATCGATGCCAACGTATAAAAAGT
* *
74099626 GGTCTTACTCGCACTCATATATCGGAGTCACATATCGATGCCAACGTATAAAAAGT
1 GGTCTTACTCGCACACATATATCGAAGTCACATATCGATGCCAACGTATAAAAAGT
*
74099682 GGTCTTACTCGCATACATATATCAGAA-TCACATATCGATGCC
1 GGTCTTACTCGCACACATATATC-GAAGTCACATATCGATGCC
74099724 TCATATACAT
Statistics
Matches: 90, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
56 88 0.98
57 2 0.02
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.27
Consensus pattern (56 bp):
GGTCTTACTCGCACACATATATCGAAGTCACATATCGATGCCAACGTATAAAAAGT
Found at i:74100458 original size:31 final size:31
Alignment explanation
Indices: 74100423--74100486 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
74100413 TTATTTCACA
74100423 TTTTAGTCCCTCAAATTATTATTTTTTCAAT
1 TTTTAGTCCCTCAAATTATTATTTTTTCAAT
74100454 TTTTAGTCCCTCAAATTATTATTTTTTCAAT
1 TTTTAGTCCCTCAAATTATTATTTTTTCAAT
74100485 TT
1 TT
74100487 AGTCCTAATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.25, C:0.16, G:0.03, T:0.56
Consensus pattern (31 bp):
TTTTAGTCCCTCAAATTATTATTTTTTCAAT
Found at i:74100483 original size:16 final size:16
Alignment explanation
Indices: 74100433--74100483 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
74100423 TTTTAGTCCC
74100433 TCAAATTATTATTTTT
1 TCAAATTATTATTTTT
* * ***
74100449 TC-AATTTTTAGTCCC
1 TCAAATTATTATTTTT
74100464 TCAAATTATTATTTTT
1 TCAAATTATTATTTTT
74100480 TCAA
1 TCAA
74100484 TTTAGTCCTA
Statistics
Matches: 24, Mismatches: 10, Indels: 2
0.67 0.28 0.06
Matches are distributed among these distances:
15 10 0.42
16 14 0.58
ACGTcount: A:0.29, C:0.14, G:0.02, T:0.55
Consensus pattern (16 bp):
TCAAATTATTATTTTT
Found at i:74103331 original size:25 final size:25
Alignment explanation
Indices: 74103302--74103349 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
74103292 TTATAATATG
* * *
74103302 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
74103327 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
74103350 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:74103418 original size:20 final size:20
Alignment explanation
Indices: 74103393--74103451 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
74103383 TAAATATGGT
74103393 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
74103413 ATGTATGATACGCACATGAT
1 ATGTATGATATGCACATGAA
74103433 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
74103452 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:74103532 original size:23 final size:24
Alignment explanation
Indices: 74103502--74103596 Score: 124
Period size: 24 Copynumber: 4.0 Consensus size: 24
74103492 GAGGAAGTGA
74103502 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
74103525 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
74103549 GAAAGGGCTT-TGGCCCCAGTTATT
1 AAAAGGGCTTAT-GCCCCAGTTATT
*
74103573 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
74103597 ATGATAAAGC
Statistics
Matches: 64, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
23 23 0.36
24 30 0.47
25 11 0.17
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:74103570 original size:47 final size:49
Alignment explanation
Indices: 74103503--74103596 Score: 133
Period size: 47 Copynumber: 2.0 Consensus size: 49
74103493 AGGAAGTGAA
*
74103503 AAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTATTG
1 AAAGGGCTTATGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTATTG
74103550 AAAGGGCTT-TGGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
1 AAAGGGCTTAT-GCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
74103597 ATGATAAAGC
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
46 1 0.02
47 19 0.45
48 11 0.26
49 11 0.26
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (49 bp):
AAAGGGCTTATGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTATTG
Found at i:74103860 original size:68 final size:69
Alignment explanation
Indices: 74103788--74103926 Score: 262
Period size: 68 Copynumber: 2.0 Consensus size: 69
74103778 CGTTTACAGT
74103788 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGG-CCAGTAATATGAAAT
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTAATATGAAAT
74103852 ATGA
66 ATGA
*
74103856 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTATTATGAAAT
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTAATATGAAAT
74103921 ATGA
66 ATGA
74103925 AA
1 AA
74103927 TACGAAAAGG
Statistics
Matches: 69, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
68 49 0.71
69 20 0.29
ACGTcount: A:0.40, C:0.15, G:0.22, T:0.24
Consensus pattern (69 bp):
AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTAATATGAAAT
ATGA
Found at i:74103879 original size:31 final size:31
Alignment explanation
Indices: 74103814--74103926 Score: 138
Period size: 38 Copynumber: 3.5 Consensus size: 31
74103804 TATTATGAAA
* *
74103814 TATGAAACATGAAAAGGCTTCGG-CCAGTAA
1 TATGAAATATGAAAAGGCTTCGGCCCAGTAT
74103844 TATGAAATATGAAAAGGCTTCGGCCCAGTAT
1 TATGAAATATGAAAAGGCTTCGGCCCAGTAT
74103875 TATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTAT
1 TATG-AA-AT-----ATGAAAAGGCTTCGGCCCAGTAT
74103913 TATGAAATATGAAA
1 TATGAAATATGAAA
74103927 TACGAAAAGG
Statistics
Matches: 73, Mismatches: 2, Indels: 15
0.81 0.02 0.17
Matches are distributed among these distances:
30 22 0.30
31 16 0.22
32 2 0.03
33 2 0.03
36 2 0.03
37 2 0.03
38 27 0.37
ACGTcount: A:0.41, C:0.14, G:0.21, T:0.24
Consensus pattern (31 bp):
TATGAAATATGAAAAGGCTTCGGCCCAGTAT
Found at i:74103894 original size:38 final size:38
Alignment explanation
Indices: 74103842--74103949 Score: 180
Period size: 38 Copynumber: 2.8 Consensus size: 38
74103832 TTCGGCCAGT
74103842 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
1 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
*
74103880 AATATGAAACATGAAAAGGCTTCGGCCCAGTATTATGA
1 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
* *
74103918 AATATGAAATACGAAAAGGGCTACGGCCCAGT
1 AATATGAAATATGAAAA-GGCTTCGGCCCAGT
74103950 GCATGATTGA
Statistics
Matches: 65, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
38 52 0.80
39 13 0.20
ACGTcount: A:0.40, C:0.16, G:0.22, T:0.22
Consensus pattern (38 bp):
AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
Found at i:74111682 original size:25 final size:25
Alignment explanation
Indices: 74111653--74111700 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
74111643 TTATAATATG
* * *
74111653 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
74111678 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
74111701 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:74111769 original size:20 final size:20
Alignment explanation
Indices: 74111744--74111802 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
74111734 TAAATATGGT
74111744 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
74111764 ATGTATGATACGCACATGAT
1 ATGTATGATATGCACATGAA
74111784 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
74111803 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:74111883 original size:23 final size:24
Alignment explanation
Indices: 74111853--74111947 Score: 124
Period size: 24 Copynumber: 4.0 Consensus size: 24
74111843 GAGGAAGTGA
74111853 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
74111876 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
74111900 GAAAGGGCTT-TGGCCCCAGTTATT
1 AAAAGGGCTTAT-GCCCCAGTTATT
*
74111924 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
74111948 ATGATAAAGC
Statistics
Matches: 64, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
23 23 0.36
24 30 0.47
25 11 0.17
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:74111921 original size:47 final size:49
Alignment explanation
Indices: 74111854--74111947 Score: 133
Period size: 47 Copynumber: 2.0 Consensus size: 49
74111844 AGGAAGTGAA
*
74111854 AAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTATTG
1 AAAGGGCTTATGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTATTG
74111901 AAAGGGCTT-TGGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
1 AAAGGGCTTAT-GCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
74111948 ATGATAAAGC
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
46 1 0.02
47 19 0.45
48 11 0.26
49 11 0.26
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (49 bp):
AAAGGGCTTATGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTATTG
Found at i:74112190 original size:38 final size:38
Alignment explanation
Indices: 74112139--74112301 Score: 232
Period size: 38 Copynumber: 4.4 Consensus size: 38
74112129 CGTTTACAGT
74112139 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
*
74112177 AAAGGCTTCGGCCCAG-----T--AATATGAAATATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
74112208 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
* *
74112246 AAAGGCTTCGGCCCAGTATTATGAAATATGAAATACGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
*
74112284 AAAGGGCTACGGCCCAGT
1 AAA-GGCTTCGGCCCAGT
74112302 GCATGATTGA
Statistics
Matches: 112, Mismatches: 5, Indels: 15
0.85 0.04 0.11
Matches are distributed among these distances:
31 29 0.26
33 1 0.01
36 1 0.01
38 68 0.61
39 13 0.12
ACGTcount: A:0.38, C:0.17, G:0.23, T:0.22
Consensus pattern (38 bp):
AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
Found at i:74112201 original size:31 final size:31
Alignment explanation
Indices: 74112163--74112278 Score: 142
Period size: 31 Copynumber: 3.5 Consensus size: 31
74112153 AGTATTATGA
74112163 AATATGAAACATGAAAAGGCTTCGGCCCAGT
1 AATATGAAACATGAAAAGGCTTCGGCCCAGT
*
74112194 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTAT
1 AATATGAAACATGAAAAGGCTTCGGCCCAG-----T
74112230 GAAATATGAAACATGAAAAGGCTTCGGCCCAGT
1 --AATATGAAACATGAAAAGGCTTCGGCCCAGT
* *
74112263 ATTATGAAATATGAAA
1 AATATGAAACATGAAA
74112279 TACGAAAAGG
Statistics
Matches: 74, Mismatches: 4, Indels: 14
0.80 0.04 0.15
Matches are distributed among these distances:
31 43 0.58
33 1 0.01
36 1 0.01
38 29 0.39
ACGTcount: A:0.41, C:0.15, G:0.21, T:0.23
Consensus pattern (31 bp):
AATATGAAACATGAAAAGGCTTCGGCCCAGT
Found at i:74112215 original size:69 final size:69
Alignment explanation
Indices: 74112139--74112278 Score: 271
Period size: 69 Copynumber: 2.0 Consensus size: 69
74112129 CGTTTACAGT
74112139 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTAATATGAAAT
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTAATATGAAAT
74112204 ATGA
66 ATGA
*
74112208 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTATTATGAAAT
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTAATATGAAAT
74112273 ATGA
66 ATGA
74112277 AA
1 AA
74112279 TACGAAAAGG
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 70 1.00
ACGTcount: A:0.39, C:0.16, G:0.21, T:0.24
Consensus pattern (69 bp):
AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTAATATGAAAT
ATGA
Found at i:74119776 original size:46 final size:46
Alignment explanation
Indices: 74119718--74119849 Score: 149
Period size: 46 Copynumber: 2.9 Consensus size: 46
74119708 CAGGTGAAAG
* * * **
74119718 TAATAGTTTTTGGTTACCCATTTAGGTTAAACCTACACAAATCGAA
1 TAATAGTGTTTGGTCACCCATTTAGGTTGAACCTACACAAATAAAA
** *
74119764 TAATAGTGTTTGGTCACCCATTGGGGTTGAACCTACATAAATAAAA
1 TAATAGTGTTTGGTCACCCATTTAGGTTGAACCTACACAAATAAAA
* * *
74119810 TAATAGTGTCTGGTCACTC-GTTAGGGTTGAACCTACACAA
1 TAATAGTGTTTGGTCACCCATTTA-GGTTGAACCTACACAA
74119850 CAAATAGTCT
Statistics
Matches: 71, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
45 1 0.01
46 70 0.99
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
Consensus pattern (46 bp):
TAATAGTGTTTGGTCACCCATTTAGGTTGAACCTACACAAATAAAA
Found at i:74121762 original size:46 final size:45
Alignment explanation
Indices: 74121602--74121767 Score: 165
Period size: 46 Copynumber: 3.6 Consensus size: 45
74121592 CGCCCCTAAG
* * * * *
74121602 TGAACTCGGACTCAACTCAATGAGCTCGGGCATTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCAT-AA
* * * * *
74121648 TGAACCCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-TCA
1 TGAACTCGGACTCAACTCAACGAGTTC--A-GAC-ATTTGCATCCATAA
*
74121695 CGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCATAA
1 TGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCATAA
74121740 TTGAACTCGGACTCAACTCAACGAGTTC
1 -TGAACTCGGACTCAACTCAACGAGTTC
74121768 GGATGCTCAA
Statistics
Matches: 97, Mismatches: 16, Indels: 14
0.76 0.13 0.11
Matches are distributed among these distances:
43 6 0.06
44 3 0.03
45 3 0.03
46 50 0.52
47 26 0.27
48 1 0.01
49 3 0.03
50 5 0.05
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.23
Consensus pattern (45 bp):
TGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCATAA
Found at i:74121762 original size:93 final size:93
Alignment explanation
Indices: 74121603--74121773 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
74121593 GCCCCTAAGT
* * *
74121603 GAACTCGGACTCAACTCAATGAGCTCGGGCATTCGCATCCATAAATGAACCCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAATGAACCCGGACTCAACTCAA
74121668 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * * *
74121696 GAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCATAATTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAATGAACCCGGACTCAACTCAA
74121761 CGAGTTCGGATGC
66 CGAGTTCGGATGC
74121774 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAATGAACCCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:74124190 original size:29 final size:29
Alignment explanation
Indices: 74124151--74124238 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
74124141 CAAAGATAAC
*
74124151 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
*
74124180 GAGAAACCCGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGAATAAAGAAATCCAAG-ATA
* * * *
74124209 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCCGAATAAAGAAATCCAAGATA
74124239 CGATACTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 2 0.04
29 27 0.55
30 18 0.37
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAACCCGAATAAAGAAATCCAAGATA
Found at i:74124209 original size:15 final size:15
Alignment explanation
Indices: 74124151--74124229 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
74124141 CAAAGATAAC
*
74124151 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
74124165 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
74124180 GAGAAA-CCCGAATA
1 AAGAAATCCAGAATA
74124194 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
74124209 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
74124224 AAGAAA
1 AAGAAA
74124230 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 19 0.36
15 34 0.64
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:74124238 original size:15 final size:15
Alignment explanation
Indices: 74124162--74124238 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
74124152 AGAAAACCGA
74124162 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
74124177 ATAGAGAAACCCGA-
1 ATAAAGAAATCCAAG
74124191 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
74124205 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
74124221 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
74124236 ATA
1 ATA
74124239 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.20
15 37 0.76
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:74127219 original size:46 final size:46
Alignment explanation
Indices: 74127152--74127322 Score: 191
Period size: 46 Copynumber: 3.7 Consensus size: 46
74127142 CCGCCCTAAG
* * *
74127152 TGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGTTAGCATCCATAAA
* * * * **
74127198 TGAACTCGAACTCAACTCAACGAGTTCGGATGCCTAG-TTACATCTCA
1 TGAACTCGGACTCAACTCAACGAGTTCGGATG-TTAGCATCCAT-AAA
* ** * *
74127245 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGTTAGCATCCATAAA
74127291 TGAACTCGGACTCAACTCAACGAGTTCGGATG
1 TGAACTCGGACTCAACTCAACGAGTTCGGATG
74127323 CTCAACCATC
Statistics
Matches: 99, Mismatches: 23, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
46 64 0.65
47 35 0.35
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGATGTTAGCATCCATAAA
Found at i:74127312 original size:93 final size:93
Alignment explanation
Indices: 74127153--74127323 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
74127143 CGCCCTAAGT
***
74127153 GAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATAAATGAACTCGAACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGAACTCAACTCAA
74127218 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * * *
74127246 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGAACTCAACTCAA
74127311 CGAGTTCGGATGC
66 CGAGTTCGGATGC
74127324 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGAACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:74129963 original size:38 final size:39
Alignment explanation
Indices: 74129842--74130003 Score: 245
Period size: 39 Copynumber: 4.2 Consensus size: 39
74129832 TGTGTATGAA
*
74129842 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
*
74129881 TGTGCAAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
74129920 GGTGCGAGCTATGATATCCGGGCTAAG-CCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
74129958 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
74129998 TGTGCG
1 TGTGCG
74130004 GGTTACCATA
Statistics
Matches: 110, Mismatches: 11, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
38 34 0.31
39 60 0.55
40 16 0.15
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:74130019 original size:78 final size:78
Alignment explanation
Indices: 74129859--74130034 Score: 237
Period size: 78 Copynumber: 2.2 Consensus size: 78
74129849 ATTGTGATAT
74129859 CCGGGCTAAGCCCGAAGGCAATTGTGCAAGTTGTGATATCCGGGCTAAGCCCGAAGGCAATGGTG
1 CCGGGCTAAGCCCGAAGGCAATTGTGCAAGTTGTGATATCCGGGCTAAGCCCGAAGGCAATGGTG
** *
74129924 CGAGCTATGATAT
66 CGAGCTACCATAA
* * * *
74129937 CCGGGCTAAG-CCGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCAATTGTGCAAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAATGGT
* *
74130001 GCGGGTTACCATAA
65 GCGAGCTACCATAA
*
74130015 CCGGGCTATGTCCCGAAGGC
1 CCGGGCTAAG-CCCGAAGGC
74130035 GTTTGAACGA
Statistics
Matches: 85, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
77 36 0.42
78 41 0.48
80 8 0.09
ACGTcount: A:0.23, C:0.23, G:0.32, T:0.22
Consensus pattern (78 bp):
CCGGGCTAAGCCCGAAGGCAATTGTGCAAGTTGTGATATCCGGGCTAAGCCCGAAGGCAATGGTG
CGAGCTACCATAA
Found at i:74135366 original size:40 final size:39
Alignment explanation
Indices: 74135321--74135448 Score: 141
Period size: 40 Copynumber: 3.2 Consensus size: 39
74135311 CGGAATATAA
*
74135321 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TGCACAATTGCCTTCGGGTCTTAGC
** *
74135361 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACT-GCACAATTGCCTTCGGGTCTTAGC
* * * *
74135401 CCGGATATAATTTC-CAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAA--TCACTGCACAATTGCCTTCGGGTCTTAGC
74135441 CCGGATAT
1 CCGGATAT
74135449 CATTCAATTT
Statistics
Matches: 74, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
39 1 0.01
40 71 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (39 bp):
CCGGATATAATCACTGCACAATTGCCTTCGGGTCTTAGC
Found at i:74138683 original size:30 final size:29
Alignment explanation
Indices: 74138589--74138690 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
74138579 TATAGTGAAT
* * *
74138589 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
74138618 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
74138646 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
74138676 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
74138691 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:74147985 original size:18 final size:18
Alignment explanation
Indices: 74147958--74147995 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
74147948 AAAATATTCA
* *
74147958 AAATATTTTTTATTTTTT
1 AAATAATTTTAATTTTTT
74147976 AAATAATTTTAATTTTTT
1 AAATAATTTTAATTTTTT
74147994 AA
1 AA
74147996 CACTTAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (18 bp):
AAATAATTTTAATTTTTT
Found at i:74148158 original size:22 final size:22
Alignment explanation
Indices: 74148133--74148180 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 22
74148123 ACAATTTGAT
*
74148133 AAAAAAGTATAAATTTAAAATTA
1 AAAAAAAT-TAAATTTAAAATTA
*
74148156 AAAAAAATTAAATTTAGAATTA
1 AAAAAAATTAAATTTAAAATTA
74148178 AAA
1 AAA
74148181 TATTATTTTC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 16 0.70
23 7 0.30
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.29
Consensus pattern (22 bp):
AAAAAAATTAAATTTAAAATTA
Found at i:74149556 original size:5 final size:5
Alignment explanation
Indices: 74149546--74149585 Score: 55
Period size: 5 Copynumber: 8.2 Consensus size: 5
74149536 TTTTTAAATT
* *
74149546 TTTTA TTTTA TTTTA TTTTA TTTTA TATT- TTATA TTTTA T
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA T
74149586 ATAATTTTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
4 2 0.07
5 28 0.93
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.78
Consensus pattern (5 bp):
TTTTA
Found at i:74149584 original size:7 final size:7
Alignment explanation
Indices: 74149522--74149587 Score: 60
Period size: 7 Copynumber: 9.0 Consensus size: 7
74149512 TTGCCTGAAA
*
74149522 TTTATAA
1 TTTATAT
74149529 TTTATAATT
1 TTTAT-A-T
*
74149538 TTTAAAT
1 TTTATAT
*
74149545 TTTTTAT
1 TTTATAT
*
74149552 TTTATTT
1 TTTATAT
*
74149559 TATTTTAT
1 T-TTATAT
74149567 TTTATAT
1 TTTATAT
74149574 TTTATAT
1 TTTATAT
74149581 TTTATAT
1 TTTATAT
74149588 AATTTTTTAA
Statistics
Matches: 47, Mismatches: 9, Indels: 6
0.76 0.15 0.10
Matches are distributed among these distances:
7 36 0.77
8 7 0.15
9 4 0.09
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (7 bp):
TTTATAT
Done.