Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 236 of 318
Found at i:74149592 original size:29 final size:29
Alignment explanation
Indices: 74149537--74149593 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
74149527 AATTTATAAT
* * *
74149537 TTTTAAATTTTTTATTTTATTTTATTTTA
1 TTTTAAATTTTATATTTTATATAATTTTA
*
74149566 TTTTATATTTTATATTTTATATAATTTT
1 TTTTAAATTTTATATTTTATATAATTTT
74149594 TTAAAAGAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (29 bp):
TTTTAAATTTTATATTTTATATAATTTTA
Found at i:74153085 original size:37 final size:37
Alignment explanation
Indices: 74153042--74153115 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
74153032 TTTTAAGAAT
74153042 GATTTACTATGGATACTTTTTGAGTTGATTAATGAGG
1 GATTTACTATGGATACTTTTTGAGTTGATTAATGAGG
74153079 GATTTACTATGGATACTTTTTGAGTTGATTAATGAGG
1 GATTTACTATGGATACTTTTTGAGTTGATTAATGAGG
74153116 AGTAATGTAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.27, C:0.05, G:0.24, T:0.43
Consensus pattern (37 bp):
GATTTACTATGGATACTTTTTGAGTTGATTAATGAGG
Found at i:74170940 original size:46 final size:44
Alignment explanation
Indices: 74170836--74170943 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
74170826 TGTCTTTGAC
** * * *
74170836 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
74170880 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
74170926 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
74170944 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:74177083 original size:46 final size:44
Alignment explanation
Indices: 74176979--74177086 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
74176969 TGTCTTTGAC
** * * *
74176979 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
74177023 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
74177069 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
74177087 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:74186591 original size:44 final size:42
Alignment explanation
Indices: 74186488--74186605 Score: 128
Period size: 44 Copynumber: 2.8 Consensus size: 42
74186478 ATCAACTATC
* * * * *
74186488 GATGCCACTGTCCCAGGCAGGGTCTTACACGAAATCATATAT
1 GATGCCAATGTCCCAGACATGGTCTTACACGAAATCACAAAT
* * * *
74186530 GGTGCTAAAGTCCCAGACATGGTCTTACATGTAAATCACAAACT
1 GATGCCAATGTCCCAGACATGGTCTTACACG-AAATCACAAA-T
*
74186574 GATGCCAATGTCCCAGACGTGGTCTTACACGA
1 GATGCCAATGTCCCAGACATGGTCTTACACGA
74186606 TAATACATTT
Statistics
Matches: 60, Mismatches: 14, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
42 24 0.40
43 9 0.15
44 27 0.45
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.24
Consensus pattern (42 bp):
GATGCCAATGTCCCAGACATGGTCTTACACGAAATCACAAAT
Found at i:74190942 original size:27 final size:27
Alignment explanation
Indices: 74190882--74191220 Score: 464
Period size: 27 Copynumber: 12.6 Consensus size: 27
74190872 TAGTTTACCA
* ** *
74190882 AATTACCAAAATACCCCTGGT-TTGTAA
1 AATTACCGAAATACCCCT-GTAGGGTAG
** *
74190909 AATTACTAAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
74190936 AAATACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
74190963 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
74190990 AATTACCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
74191017 AATTATTGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
74191044 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
74191071 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
74191098 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
74191125 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
74191152 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * *
74191179 AATTACTAAAATACCCCCGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
74191206 AATTACCGAGATACC
1 AATTACCGAAATACC
74191221 TTGTGGAGTA
Statistics
Matches: 282, Mismatches: 29, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
26 2 0.01
27 280 0.99
ACGTcount: A:0.35, C:0.21, G:0.20, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:74191717 original size:22 final size:22
Alignment explanation
Indices: 74191665--74191729 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
74191655 TTAAAGCCTT
* *
74191665 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
74191687 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
74191709 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
74191730 ACGTATTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:74191919 original size:27 final size:27
Alignment explanation
Indices: 74191889--74191989 Score: 114
Period size: 27 Copynumber: 3.7 Consensus size: 27
74191879 TTCTGTTAAT
* * *
74191889 TGGCTTTGCCACATTATCTGTTTCTTG
1 TGGCTATGCCACAATATCTGTTTCTGG
74191916 TGGCTATGCCACAAATATCTG-TTCTGG
1 TGGCTATGCCAC-AATATCTGTTTCTGG
* *
74191943 TGGCTCTGCCACAATATCTGTATCTGG
1 TGGCTATGCCACAATATCTGTTTCTGG
* * *
74191970 TGACTCTGTCACAATATCTG
1 TGGCTATGCCACAATATCTG
74191990 ATAACTGAGC
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
26 8 0.12
27 50 0.77
28 7 0.11
ACGTcount: A:0.19, C:0.24, G:0.20, T:0.38
Consensus pattern (27 bp):
TGGCTATGCCACAATATCTGTTTCTGG
Found at i:74192171 original size:6 final size:6
Alignment explanation
Indices: 74192156--74192236 Score: 67
Period size: 6 Copynumber: 13.2 Consensus size: 6
74192146 TACTTAATAG
* * *
74192156 TGATTC TGATTT TGATTC TG-TTACC TGATAC TGATTT TGATTC TGATTC
1 TGATTC TGATTC TGATTC TGATT--C TGATTC TGATTC TGATTC TGATTC
* *
74192205 TG-TCACC TAATTC TGATTC TGATTC TGATTC T
1 TGAT--TC TGATTC TGATTC TGATTC TGATTC T
74192237 AGTTTTGATA
Statistics
Matches: 59, Mismatches: 10, Indels: 12
0.73 0.12 0.15
Matches are distributed among these distances:
5 3 0.05
6 49 0.83
7 5 0.08
8 2 0.03
ACGTcount: A:0.19, C:0.17, G:0.15, T:0.49
Consensus pattern (6 bp):
TGATTC
Found at i:74192177 original size:31 final size:31
Alignment explanation
Indices: 74192139--74192236 Score: 133
Period size: 31 Copynumber: 3.2 Consensus size: 31
74192129 CTGATTTTTT
* * *
74192139 ATTCTGTTACTTAATAGTGATTCTGATTTTG
1 ATTCTGTTACCTAATACTGATTCTGATTCTG
* *
74192170 ATTCTGTTACCTGATACTGATTTTGATTCTG
1 ATTCTGTTACCTAATACTGATTCTGATTCTG
* *
74192201 ATTCTGTCACCTAATTCTGATTCTGATTCTG
1 ATTCTGTTACCTAATACTGATTCTGATTCTG
74192232 ATTCT
1 ATTCT
74192237 AGTTTTGATA
Statistics
Matches: 58, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 58 1.00
ACGTcount: A:0.20, C:0.16, G:0.14, T:0.49
Consensus pattern (31 bp):
ATTCTGTTACCTAATACTGATTCTGATTCTG
Found at i:74194253 original size:27 final size:27
Alignment explanation
Indices: 74194188--74194571 Score: 475
Period size: 27 Copynumber: 14.3 Consensus size: 27
74194178 TAATTTACCA
* ** *
74194188 AATTACCAAAATACCCCTGGT-TTGTAA
1 AATTACCGAAATACCCCT-GTAGGGTAG
** *
74194215 AATTACTAAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
74194242 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
74194269 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
74194296 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
74194323 AATTATTGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
74194350 TATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
74194377 AATTACCGAAATACCCCTGTAGTGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
74194404 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
74194431 AATTATCGCAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
74194458 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
74194485 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
74194512 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * * *
74194539 AATTATCGAGATA-CCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
74194565 AATTACC
1 AATTACC
74194572 ATTTTGCCCC
Statistics
Matches: 314, Mismatches: 42, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
26 17 0.05
27 297 0.95
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:74195050 original size:22 final size:22
Alignment explanation
Indices: 74194998--74195062 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
74194988 TTAAAGCCTT
* *
74194998 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
74195020 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
74195042 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
74195063 ACGTATTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:74195251 original size:27 final size:27
Alignment explanation
Indices: 74195221--74195296 Score: 91
Period size: 27 Copynumber: 2.8 Consensus size: 27
74195211 ATTCTGTTAA
* * *
74195221 GTGGCTTTGCCACATTATCTGTTTCTT
1 GTGGCTATGCCACAATATCTGTTTCTG
74195248 GTGGCTATGCCACAAATATCTG-TTCTG
1 GTGGCTATGCCAC-AATATCTGTTTCTG
* *
74195275 GTAGCTCTGCCACAATATCTGT
1 GTGGCTATGCCACAATATCTGT
74195297 ATGTAACACC
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
26 8 0.19
27 27 0.64
28 7 0.17
ACGTcount: A:0.18, C:0.24, G:0.20, T:0.38
Consensus pattern (27 bp):
GTGGCTATGCCACAATATCTGTTTCTG
Found at i:74196716 original size:40 final size:40
Alignment explanation
Indices: 74196656--74196821 Score: 212
Period size: 40 Copynumber: 4.2 Consensus size: 40
74196646 AAGCCAAGTA
* * *
74196656 CTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATGC
1 CTTCGGGACTTAGCCCGGATATAG-TAACTCGCACGAATGC
*
74196695 CTTCGGGACATAGCCCGGATATAGTAACTCGCACGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATGC
*
74196735 CTTTGGGACTTAGCCCGGATATAGTAACTCGCACGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATGC
* * * *
74196775 CTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATGC
1 CTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACGAATGC
74196815 CTTCGGG
1 CTTCGGG
74196822 CCCGGTTATC
Statistics
Matches: 113, Mismatches: 11, Indels: 5
0.88 0.09 0.04
Matches are distributed among these distances:
39 12 0.11
40 101 0.89
ACGTcount: A:0.24, C:0.27, G:0.25, T:0.23
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATGC
Found at i:74198777 original size:19 final size:19
Alignment explanation
Indices: 74198755--74198812 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
74198745 TTCTGATTTT
74198755 TGATTCTGTTACCTGATAC
1 TGATTCTGTTACCTGATAC
*
74198774 TGATTCTG--A--T--T-T
1 TGATTCTGTTACCTGATAC
74198786 TGATTCTGTTACCTGATAC
1 TGATTCTGTTACCTGATAC
74198805 TGATTCTG
1 TGATTCTG
74198813 ATTCTGATTC
Statistics
Matches: 30, Mismatches: 2, Indels: 14
0.65 0.04 0.30
Matches are distributed among these distances:
12 8 0.27
13 1 0.03
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
18 1 0.03
19 16 0.53
ACGTcount: A:0.19, C:0.17, G:0.17, T:0.47
Consensus pattern (19 bp):
TGATTCTGTTACCTGATAC
Found at i:74198782 original size:6 final size:6
Alignment explanation
Indices: 74198744--74198863 Score: 86
Period size: 6 Copynumber: 19.3 Consensus size: 6
74198734 TTGCATTCAC
* * *
74198744 ATTCTG ATTTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTTTG ATTCTG
1 ATTCTG A-TTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
74198794 -TTACCTG ATACTG ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
74198844 ATTCTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG A-TTCTG AT
74198864 AATGTTTCTT
Statistics
Matches: 90, Mismatches: 12, Indels: 24
0.71 0.10 0.19
Matches are distributed among these distances:
5 6 0.07
6 67 0.74
7 14 0.16
8 3 0.03
ACGTcount: A:0.19, C:0.17, G:0.15, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:74198839 original size:37 final size:31
Alignment explanation
Indices: 74198744--74198879 Score: 168
Period size: 31 Copynumber: 4.4 Consensus size: 31
74198734 TTGCATTCAC
*
74198744 ATTCTGATTTTTGATTCTGTTACCTGATACTG
1 ATTCTGA-TTCTGATTCTGTTACCTGATACTG
*
74198776 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
* * *
74198807 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
*
74198838 ATTCTGATTCTGATTCTAGTT--CTGATAATG
1 ATTCTGATTCTGATTCT-GTTACCTGATACTG
* *
74198868 TTTCTTATTCTG
1 ATTCTGATTCTG
74198880 TAATGGGTTA
Statistics
Matches: 93, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
30 16 0.17
31 68 0.73
32 9 0.10
ACGTcount: A:0.19, C:0.17, G:0.15, T:0.49
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTTACCTGATACTG
Found at i:74200102 original size:28 final size:28
Alignment explanation
Indices: 74200062--74200119 Score: 107
Period size: 28 Copynumber: 2.1 Consensus size: 28
74200052 ATGATAAAAG
74200062 AAAATATCATCTTATTATTGTCATCTTC
1 AAAATATCATCTTATTATTGTCATCTTC
*
74200090 AAAATATCATCTTATTATTGTCATTTTC
1 AAAATATCATCTTATTATTGTCATCTTC
74200118 AA
1 AA
74200120 CCTAAAATTC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.34, C:0.16, G:0.03, T:0.47
Consensus pattern (28 bp):
AAAATATCATCTTATTATTGTCATCTTC
Found at i:74212694 original size:13 final size:14
Alignment explanation
Indices: 74212671--74212699 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
74212661 AGATAGTTTT
74212671 TTCTACAATTTTAA
1 TTCTACAATTTTAA
74212685 TTCT-CAATTTTAA
1 TTCTACAATTTTAA
74212698 TT
1 TT
74212700 ATCATACTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.31, C:0.14, G:0.00, T:0.55
Consensus pattern (14 bp):
TTCTACAATTTTAA
Found at i:74213941 original size:3 final size:3
Alignment explanation
Indices: 74213933--74213980 Score: 96
Period size: 3 Copynumber: 16.0 Consensus size: 3
74213923 CTTTGACGAC
74213933 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
74213981 ATAAGGCATG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:74214083 original size:13 final size:13
Alignment explanation
Indices: 74214055--74214102 Score: 55
Period size: 14 Copynumber: 3.7 Consensus size: 13
74214045 TGATGTTAGT
74214055 TTTTAAAATAATA
1 TTTTAAAATAATA
74214068 TTTTATAAATAA-A
1 TTTTA-AAATAATA
*
74214081 -TTTAAATACAATA
1 TTTTAAA-ATAATA
74214094 TTTTAAAAT
1 TTTTAAAAT
74214103 TATTTAATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
11 2 0.07
12 7 0.24
13 8 0.28
14 12 0.41
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (13 bp):
TTTTAAAATAATA
Found at i:74216715 original size:37 final size:37
Alignment explanation
Indices: 74216656--74216728 Score: 119
Period size: 37 Copynumber: 2.0 Consensus size: 37
74216646 AGCTCAGACG
*
74216656 AAATCTCCACACGAAATTATCGGGTCTTACCCGGAAA
1 AAATCTCCACACGAAATCATCGGGTCTTACCCGGAAA
* *
74216693 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGAA
1 AAATCTCCACACGAAATCATCGGGTCTTACCCGGAA
74216729 TATATTTCCA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.32, C:0.29, G:0.18, T:0.22
Consensus pattern (37 bp):
AAATCTCCACACGAAATCATCGGGTCTTACCCGGAAA
Found at i:74216999 original size:48 final size:48
Alignment explanation
Indices: 74216873--74217054 Score: 285
Period size: 48 Copynumber: 3.8 Consensus size: 48
74216863 GCACATCGCC
*
74216873 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
74216923 TATATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
* *
74216971 TACACATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
74217019 TACATATTTCACATTAGCCATTCGGCTTTACCACAT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACAT
74217055 TTATGCATGT
Statistics
Matches: 121, Mismatches: 9, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
48 77 0.64
49 2 0.02
50 42 0.35
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.35
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:74217062 original size:98 final size:97
Alignment explanation
Indices: 74216873--74217054 Score: 296
Period size: 98 Copynumber: 1.9 Consensus size: 97
74216863 GCACATCGCC
* * *
74216873 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACACATTTCACACTAGCCATTCAGCTTTACCACATATACATATCTCA-ATACATATTTCACATT
74216938 GACCATTCGGCTTTACCACATATGCATATCTCA
65 GACCATTCGGCTTTACCACATATGCATATCTCA
*
74216971 TACACATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTC-ATACATATTTCACATT-
1 TACACATTTCACACTAGCCATTCAGCTTTACCACATATACATATCTCAATACATATTTCACATTG
74217034 AGCCATTCGGCTTTACCACAT
66 A-CCATTCGGCTTTACCACAT
74217055 TTATGCATGT
Statistics
Matches: 79, Mismatches: 4, Indels: 4
0.91 0.05 0.05
Matches are distributed among these distances:
95 1 0.01
96 34 0.43
98 44 0.56
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.35
Consensus pattern (97 bp):
TACACATTTCACACTAGCCATTCAGCTTTACCACATATACATATCTCAATACATATTTCACATTG
ACCATTCGGCTTTACCACATATGCATATCTCA
Found at i:74217089 original size:47 final size:47
Alignment explanation
Indices: 74217027--74217220 Score: 271
Period size: 47 Copynumber: 4.1 Consensus size: 47
74217017 CATACATATT
* * * * *
74217027 TCACATTAGCCATTCGGCTTTACCACATTTATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * * *
74217074 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTAACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
74217121 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
74217168 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
74217215 TCACAT
1 TCACAT
74217221 AAAATCCTTG
Statistics
Matches: 130, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 130 1.00
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:74217147 original size:22 final size:22
Alignment explanation
Indices: 74217120--74217191 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
74217110 GCTAACATTC
74217120 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
74217142 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
74217166 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
74217189 ATC
1 ATC
74217192 TCATATATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:74217598 original size:26 final size:26
Alignment explanation
Indices: 74217562--74217671 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
74217552 TGATACAAAT
74217562 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
74217588 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
74217614 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
74217640 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
74217666 TGATAA
1 TGATAA
74217672 GAATTTTATG
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:74219742 original size:136 final size:136
Alignment explanation
Indices: 74219457--74219729 Score: 528
Period size: 136 Copynumber: 2.0 Consensus size: 136
74219447 GAGTAGTCTC
*
74219457 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
1 CCCAAATGGGCTTACATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
74219522 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGACCCAGTACCA
66 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGACCCAGTACCA
74219587 CTGTTA
131 CTGTTA
74219593 CCCAAATGGGCTTACATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
1 CCCAAATGGGCTTACATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
*
74219658 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
66 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGACCCAGTACCA
74219723 CTGTTA
131 CTGTTA
74219729 C
1 C
74219730 TTGAATGGGC
Statistics
Matches: 135, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
136 135 1.00
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.32
Consensus pattern (136 bp):
CCCAAATGGGCTTACATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGACCCAGTACCA
CTGTTA
Found at i:74224511 original size:40 final size:40
Alignment explanation
Indices: 74224465--74224736 Score: 418
Period size: 40 Copynumber: 6.8 Consensus size: 40
74224455 TCAGCATGAT
* * * * * *
74224465 TGCTCTTCGGAACCTAGCTCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
74224505 TACTCTTCGGAACTTAGCCCGGATACATCACGAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
74224545 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
74224585 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
74224625 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
74224665 TGCTCTTCGGGACTTAGCCCGGATACATCACTAACACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
74224705 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
74224737 CTCAATTCTC
Statistics
Matches: 217, Mismatches: 15, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 217 1.00
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:74226060 original size:37 final size:37
Alignment explanation
Indices: 74226001--74226072 Score: 110
Period size: 37 Copynumber: 1.9 Consensus size: 37
74225991 AGCTCAGACG
* *
74226001 AAATCTCCACATGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACATCAAGTCATCGGGTCTTACCCGGACA
74226038 AAATCTCCACA-CATAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACATCA-AGTCATCGGGTCTTACCCGGA
74226073 ATATATTTCA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
36 1 0.03
37 31 0.97
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (37 bp):
AAATCTCCACATCAAGTCATCGGGTCTTACCCGGACA
Found at i:74226343 original size:48 final size:48
Alignment explanation
Indices: 74226218--74226401 Score: 298
Period size: 48 Copynumber: 3.8 Consensus size: 48
74226208 GCACATCGCC
*
74226218 TACATATTTCACACTAGCCATTCGGCTTTACCACATATGCATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATGCATATCTC--A
* *
74226268 TATATATTTCACATT-GACCATTTGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATGCATATCTCA
*
74226316 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATGCATATCTCA
74226364 TACATATTTCACATTAGCCATTCGGCTTTACCACATAT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATAT
74226402 ATGCATGTTC
Statistics
Matches: 126, Mismatches: 6, Indels: 6
0.91 0.04 0.04
Matches are distributed among these distances:
48 82 0.65
49 2 0.02
50 42 0.33
ACGTcount: A:0.30, C:0.26, G:0.08, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATGCATATCTCA
Found at i:74226407 original size:98 final size:97
Alignment explanation
Indices: 74226218--74226401 Score: 300
Period size: 98 Copynumber: 1.9 Consensus size: 97
74226208 GCACATCGCC
* *
74226218 TACATATTTCACACTAGCCATTCGGCTTTACCACATATGCATATCTCATATATATATTTCACATT
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA-ATACATATTTCACATT
*
74226283 GACCATTTGGCTTTACCACATATGCATATCTCA
65 GACCATTCGGCTTTACCACATATGCATATCTCA
*
74226316 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC-ATACATATTTCACATT-
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAATACATATTTCACATTG
74226379 AGCCATTCGGCTTTACCACATAT
66 A-CCATTCGGCTTTACCACATAT
74226402 ATGCATGTTC
Statistics
Matches: 81, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
95 1 0.01
96 35 0.43
98 45 0.56
ACGTcount: A:0.30, C:0.26, G:0.08, T:0.36
Consensus pattern (97 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAATACATATTTCACATTG
ACCATTCGGCTTTACCACATATGCATATCTCA
Found at i:74226444 original size:25 final size:25
Alignment explanation
Indices: 74226416--74226491 Score: 65
Period size: 23 Copynumber: 3.2 Consensus size: 25
74226406 ATGTTCATAT
74226416 TCACCACATTGGCCATTCGGCCTTA
1 TCACCACATTGGCCATTCGGCCTTA
*
74226441 TCA-CACATAT-G-CA-T--GCTCATA
1 TCACCACAT-TGGCCATTCGGC-CTTA
*
74226462 TTCATCACATTGGCCATTCGGCCTTA
1 -TCACCACATTGGCCATTCGGCCTTA
74226488 TCAC
1 TCAC
74226492 ATATATGCAT
Statistics
Matches: 39, Mismatches: 3, Indels: 18
0.65 0.05 0.30
Matches are distributed among these distances:
20 2 0.05
21 3 0.08
22 5 0.13
23 8 0.21
24 8 0.21
25 8 0.21
26 3 0.08
27 2 0.05
ACGTcount: A:0.24, C:0.33, G:0.13, T:0.30
Consensus pattern (25 bp):
TCACCACATTGGCCATTCGGCCTTA
Found at i:74226451 original size:47 final size:47
Alignment explanation
Indices: 74226372--74226565 Score: 280
Period size: 47 Copynumber: 4.1 Consensus size: 47
74226362 CATACATATT
* * *
74226372 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCA
* * *
74226419 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCA
*
74226466 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCA
* * ** *
74226513 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCA
74226560 TCACAT
1 TCACAT
74226566 AAAATCCTAA
Statistics
Matches: 133, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 133 1.00
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCA
Found at i:74226492 original size:22 final size:22
Alignment explanation
Indices: 74226465--74226536 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
74226455 GCTCATATTC
74226465 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
74226487 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
74226511 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
74226534 ATC
1 ATC
74226537 TCATATATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:74226559 original size:94 final size:94
Alignment explanation
Indices: 74226325--74226565 Score: 281
Period size: 94 Copynumber: 2.6 Consensus size: 94
74226315 ATACATATTT
* * * *
74226325 CACATTAGCCATTCGGCTTTA-C-CACATATACATATCTCATACATAT-TTCACATTAGCCATTC
1 CACATTGGCCATTCGGCCTTATCACACATATACACA-CTC--ACAT-TCATCACATTAGCCATTC
* *
74226387 GGCTTTACCACATATATGCATGTTCATATTCAC
62 GGCCTTACCACATATATGCATGTTCACATTCAC
* ** * *
74226420 CACATTGGCCATTCGGCCTTATCACACATATGCATGCTCATATTCATCACATTGGCCATTCGGCC
1 CACATTGGCCATTCGGCCTTATCACACATATACACACTCACATTCATCACATTAGCCATTCGGCC
* *
74226485 TTATCACATATATGCATGTTCACATTCAT
66 TTACCACATATATGCATGTTCACATTCAC
* * *
74226514 CACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCACAT
1 CACATTGGCCATTCGGCCTTATCACACATATACACACTCACATTCATCACAT
74226566 AAAATCCTAA
Statistics
Matches: 125, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
93 1 0.01
94 91 0.73
95 19 0.15
96 4 0.03
97 10 0.08
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.34
Consensus pattern (94 bp):
CACATTGGCCATTCGGCCTTATCACACATATACACACTCACATTCATCACATTAGCCATTCGGCC
TTACCACATATATGCATGTTCACATTCAC
Found at i:74227124 original size:136 final size:136
Alignment explanation
Indices: 74226839--74227111 Score: 537
Period size: 136 Copynumber: 2.0 Consensus size: 136
74226829 GAGTAGTCTC
*
74226839 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
1 CCCAAATGGGCTTACATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
74226904 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
66 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
74226969 CTGTTA
131 CTGTTA
74226975 CCCAAATGGGCTTACATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
1 CCCAAATGGGCTTACATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
74227040 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
66 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
74227105 CTGTTA
131 CTGTTA
74227111 C
1 C
74227112 TTGAATGGGC
Statistics
Matches: 136, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
136 136 1.00
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.32
Consensus pattern (136 bp):
CCCAAATGGGCTTACATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
CTGTTA
Found at i:74234354 original size:28 final size:28
Alignment explanation
Indices: 74234322--74234420 Score: 103
Period size: 28 Copynumber: 3.5 Consensus size: 28
74234312 GCAATAAGCC
*
74234322 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
* *
74234350 CGCACACTTACTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
74234378 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
74234407 CGCACACTTAGTGC
1 CGCACACTTAGTGC
74234421 CAATTTGTGA
Statistics
Matches: 58, Mismatches: 9, Indels: 7
0.78 0.12 0.09
Matches are distributed among these distances:
27 2 0.03
28 38 0.66
29 17 0.29
30 1 0.02
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:74236431 original size:28 final size:28
Alignment explanation
Indices: 74236399--74236497 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
74236389 GCAATAAGCC
*
74236399 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
74236427 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
74236455 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
74236484 CGCACACTTAGTGC
1 CGCACACTTAGTGC
74236498 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:74243847 original size:28 final size:28
Alignment explanation
Indices: 74243815--74243913 Score: 103
Period size: 28 Copynumber: 3.5 Consensus size: 28
74243805 GCAATAAGCC
*
74243815 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
* *
74243843 CGCACACTTACTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
74243871 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
74243900 CGCACACTTAGTGC
1 CGCACACTTAGTGC
74243914 CAATTTGTGA
Statistics
Matches: 58, Mismatches: 9, Indels: 7
0.78 0.12 0.09
Matches are distributed among these distances:
27 2 0.03
28 38 0.66
29 17 0.29
30 1 0.02
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:74248756 original size:40 final size:40
Alignment explanation
Indices: 74248712--74248858 Score: 217
Period size: 40 Copynumber: 3.7 Consensus size: 40
74248702 CGATATATTA
74248712 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATG
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATG
*
74248752 TATATCCGGGTTAAATCCCGCAGGCTTCGTGTTGGTAATG
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATG
* *
74248792 TATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGT-A-C
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATG
* *
74248830 TATATCCGGGCTGAAAGTTCCGCAGGCTT
1 TATATCCGGG-TTAAA-TCCCGCAGGCTT
74248859 TGACCTAGTA
Statistics
Matches: 99, Mismatches: 6, Indels: 4
0.91 0.06 0.04
Matches are distributed among these distances:
38 10 0.10
39 5 0.05
40 84 0.85
ACGTcount: A:0.20, C:0.22, G:0.27, T:0.30
Consensus pattern (40 bp):
TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATG
Found at i:74256751 original size:40 final size:40
Alignment explanation
Indices: 74256707--74256893 Score: 263
Period size: 40 Copynumber: 4.7 Consensus size: 40
74256697 CGATATACTA
*
74256707 TATATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTAACT-
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA-TG
74256747 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATG
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATG
* *
74256787 TATATCCGGGTTAAATCTCGCAGGCTTTGTGCTGGTAATG
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATG
* * *
74256827 TATATCCGGGTTAAATCCCGCAGTCTTAGTGCTGGT-A-C
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATG
*
74256865 TATATCCGGGCTTAAAGTTCCGCAGGCTT
1 TATATCCGGG-TTAAA-TCCCGCAGGCTT
74256894 TGAGCTAGTA
Statistics
Matches: 135, Mismatches: 9, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
38 10 0.07
39 7 0.05
40 118 0.87
ACGTcount: A:0.21, C:0.22, G:0.25, T:0.32
Consensus pattern (40 bp):
TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATG
Found at i:74263488 original size:40 final size:39
Alignment explanation
Indices: 74263397--74263547 Score: 126
Period size: 40 Copynumber: 3.8 Consensus size: 39
74263387 ATAACCACGT
* * *
74263397 GCACAAATGCCTTCTGGTCTTAGCCCGGATAGAATGTCTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
*
74263437 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTA-GCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATG--ACTA
* * ** *
74263477 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
* * *
74263517 GCATAATTGTCTTCGGGGCTTAGCCCGGATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATA
74263548 TCATTCAATT
Statistics
Matches: 91, Mismatches: 15, Indels: 10
0.78 0.13 0.09
Matches are distributed among these distances:
38 1 0.01
39 4 0.04
40 85 0.93
41 1 0.01
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
Found at i:74263531 original size:80 final size:80
Alignment explanation
Indices: 74263397--74263546 Score: 196
Period size: 80 Copynumber: 1.9 Consensus size: 80
74263387 ATAACCACGT
* * *
74263397 GCACAAATGCCTTCTGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
74263462 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * * * *
74263477 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGGCTTAG
74263540 CCCGGAT
64 CCCGGAT
74263547 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
79 3 0.05
80 57 0.95
ACGTcount: A:0.21, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:74265635 original size:17 final size:17
Alignment explanation
Indices: 74265613--74265648 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
74265603 GGGAACAATA
74265613 TCTACCTTTGATTGAAT
1 TCTACCTTTGATTGAAT
74265630 TCTACCTTTGATTGAAT
1 TCTACCTTTGATTGAAT
74265647 TC
1 TC
74265649 ACTTATAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.22, C:0.19, G:0.11, T:0.47
Consensus pattern (17 bp):
TCTACCTTTGATTGAAT
Found at i:74266910 original size:76 final size:76
Alignment explanation
Indices: 74266783--74266935 Score: 243
Period size: 76 Copynumber: 2.0 Consensus size: 76
74266773 AAATGGGGTT
* * * *
74266783 TTGATATTCGGCATTGGTAATCCTTGGTTAAGGTATGAATTTTCGTTTGTTTTTGACAATTTCTA
1 TTGATATTCGACATTGGTAATCCTTGGTTAAGGCATGAATTTTCGTCTGTTTTTGACAATTTATA
*
74266848 TGTTTCTATGA
66 CGTTTCTATGA
*
74266859 TTGATATTCGACATTGGTAATCCTTGGTTAAGGCATGAATTTTCGTCTGTTTTTGATAATTTATA
1 TTGATATTCGACATTGGTAATCCTTGGTTAAGGCATGAATTTTCGTCTGTTTTTGACAATTTATA
*
74266924 CGTTTCTGTGA
66 CGTTTCTATGA
74266935 T
1 T
74266936 CGTTGCTTCG
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
76 70 1.00
ACGTcount: A:0.22, C:0.11, G:0.20, T:0.48
Consensus pattern (76 bp):
TTGATATTCGACATTGGTAATCCTTGGTTAAGGCATGAATTTTCGTCTGTTTTTGACAATTTATA
CGTTTCTATGA
Found at i:74267733 original size:42 final size:43
Alignment explanation
Indices: 74267611--74267782 Score: 133
Period size: 43 Copynumber: 4.0 Consensus size: 43
74267601 GGAACGTTGT
* *
74267611 CATCGATCTGAGA-TATCGTGTAAGACCGTGTCTAGGACA-CAGG
1 CATCGATCTGAGATTA-CGTGTAAGACCCTGTCTGGGACATC-GG
* * * * *
74267654 CCTCGATTTGAGATTTACGCGTAAGACCATGTTTGGGACATCGG
1 CATCGATCTGAGA-TTACGTGTAAGACCCTGTCTGGGACATCGG
**
74267698 CATCGTATCTGA-ATT-CGTGTAAGACCCTGTCTGGGACAGAGG
1 CATCG-ATCTGAGATTACGTGTAAGACCCTGTCTGGGACATCGG
* *
74267740 CA-CTGATACTGA-ATTACATGTAAGACCAC-GTCTGGGACGTCGG
1 CATC-GAT-CTGAGATTACGTGTAAGACC-CTGTCTGGGACATCGG
74267783 TATTGTACCC
Statistics
Matches: 104, Mismatches: 17, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
41 3 0.03
42 32 0.31
43 34 0.33
44 27 0.26
45 8 0.08
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (43 bp):
CATCGATCTGAGATTACGTGTAAGACCCTGTCTGGGACATCGG
Found at i:74270037 original size:77 final size:77
Alignment explanation
Indices: 74269909--74270059 Score: 284
Period size: 77 Copynumber: 2.0 Consensus size: 77
74269899 CACATAACTG
74269909 GTCCTATATCTTTCATGTCAATCTTGAATTTAACATGTCTTTGGTACATTTTACCATTTCATTGT
1 GTCCTATATCTTTCATGTCAATCTTGAATTTAACATGTCTTTGGTACATTTTACCATTTCATTGT
74269974 TACTTCCAAGAA
66 TACTTCCAAGAA
* *
74269986 GTCCTATATCTTTCATGTCAATCTTGAATTTCACATGTCTTTGGTATATTTTACCATTTCATTGT
1 GTCCTATATCTTTCATGTCAATCTTGAATTTAACATGTCTTTGGTACATTTTACCATTTCATTGT
74270051 TACTTCCAA
66 TACTTCCAA
74270060 CAATGAGTAT
Statistics
Matches: 72, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
77 72 1.00
ACGTcount: A:0.25, C:0.20, G:0.10, T:0.46
Consensus pattern (77 bp):
GTCCTATATCTTTCATGTCAATCTTGAATTTAACATGTCTTTGGTACATTTTACCATTTCATTGT
TACTTCCAAGAA
Found at i:74272465 original size:26 final size:26
Alignment explanation
Indices: 74272392--74272467 Score: 66
Period size: 26 Copynumber: 3.0 Consensus size: 26
74272382 GGCTATATAA
* *
74272392 CAGGAAGCTCA-TAAGAGCC-ATAAT
1 CAGGAAGCTCACAAAGAGCCTTTAAT
* * ***
74272416 TAGGAAGTTCACAAAGAAATTTTAAT
1 CAGGAAGCTCACAAAGAGCCTTTAAT
*
74272442 CAGGAAGCTCACGAAGAGCCTTTAAT
1 CAGGAAGCTCACAAAGAGCCTTTAAT
74272468 TAAGAGCTTC
Statistics
Matches: 37, Mismatches: 13, Indels: 2
0.71 0.25 0.04
Matches are distributed among these distances:
24 9 0.24
25 4 0.11
26 24 0.65
ACGTcount: A:0.41, C:0.17, G:0.20, T:0.22
Consensus pattern (26 bp):
CAGGAAGCTCACAAAGAGCCTTTAAT
Found at i:74282507 original size:42 final size:42
Alignment explanation
Indices: 74282396--74282550 Score: 213
Period size: 42 Copynumber: 3.7 Consensus size: 42
74282386 TACCGTACCA
* *
74282396 ATGCCATATCCCAGATATGGTCTTACATGTAA-TCTCATATCA
1 ATGCCATATCCCAGATATGGTCTTACACG-AAGTCTCATATCG
* * *
74282438 ATGCCAATAGCCCAGCTATGGTCTTACACGAAGTCTCATATTG
1 ATGCC-ATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
*
74282481 ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATGTCG
1 ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
* *
74282523 ATTCCATATCCCATATATGGTCTTACAC
1 ATGCCATATCCCAGATATGGTCTTACAC
74282551 ATAAACTTAT
Statistics
Matches: 100, Mismatches: 11, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
42 66 0.66
43 34 0.34
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.31
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
Found at i:74283020 original size:42 final size:43
Alignment explanation
Indices: 74282902--74283023 Score: 124
Period size: 43 Copynumber: 2.9 Consensus size: 43
74282892 CGTACCAATA
* * *
74282902 CCATATCCAAGATATGGTCTTACATGTAATCT-TGTATCGATG
1 CCATATCCCAGATATGGTCTTACACGTAATCTCAGTATCGATG
* * * * *
74282944 CGAATAGCCCAGCTATGGTCTTACACG-ATGTCTCAG-ATTGATG
1 C-CATATCCCAGATATGGTCTTACACGTA-ATCTCAGTATCGATG
*
74282987 CCATATCCCAGATGTGGTCTTACACGTAATCTCAGTA
1 CCATATCCCAGATATGGTCTTACACGTAATCTCAGTA
74283024 ACCCTAATGT
Statistics
Matches: 62, Mismatches: 13, Indels: 9
0.74 0.15 0.11
Matches are distributed among these distances:
42 29 0.47
43 32 0.52
44 1 0.02
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (43 bp):
CCATATCCCAGATATGGTCTTACACGTAATCTCAGTATCGATG
Found at i:74291258 original size:48 final size:47
Alignment explanation
Indices: 74291206--74291326 Score: 129
Period size: 46 Copynumber: 2.6 Consensus size: 47
74291196 TGTGTGCTAG
74291206 TGTAAGACCATGTTTGGGACATGGCATTGGCCA-CGATATGAGAGCCAA
1 TGTAAGACCATGTTTGGGACATGGCATT--CCATCGATATGAGAGCCAA
* * * * * * * *
74291254 TGTAAGACCATGTTAGGAACATGG-AATCGATGGTTGTGAGAGCCAG
1 TGTAAGACCATGTTTGGGACATGGCATTCCATCGATATGAGAGCCAA
*
74291300 TATAAGACCATGTTTGGGACATGGCAT
1 TGTAAGACCATGTTTGGGACATGGCAT
74291327 CGACGACCAT
Statistics
Matches: 59, Mismatches: 12, Indels: 5
0.78 0.16 0.07
Matches are distributed among these distances:
45 2 0.03
46 32 0.54
47 3 0.05
48 22 0.37
ACGTcount: A:0.30, C:0.16, G:0.30, T:0.25
Consensus pattern (47 bp):
TGTAAGACCATGTTTGGGACATGGCATTCCATCGATATGAGAGCCAA
Found at i:74291343 original size:26 final size:26
Alignment explanation
Indices: 74291305--74291356 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
74291295 GCCAGTATAA
* *
74291305 GACCATGTTTGGGACATGGCATCGAC
1 GACCATGTCTGGGACATGACATCGAC
*
74291331 GACCATGTCTGGGACGTGACATCGAC
1 GACCATGTCTGGGACATGACATCGAC
74291357 ATTGAATGTG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.23, C:0.25, G:0.31, T:0.21
Consensus pattern (26 bp):
GACCATGTCTGGGACATGACATCGAC
Found at i:74292250 original size:40 final size:40
Alignment explanation
Indices: 74292193--74292369 Score: 243
Period size: 40 Copynumber: 4.4 Consensus size: 40
74292183 TCGAATGATG
* * *
74292193 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
74292233 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
74292273 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
74292313 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
74292354 -CCGGGCTATGTCCCGA
1 TCCGGGCTAAGTCCCGA
74292370 TTGTATTTGA
Statistics
Matches: 125, Mismatches: 8, Indels: 8
0.89 0.06 0.06
Matches are distributed among these distances:
39 1 0.01
40 114 0.91
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:74292385 original size:80 final size:79
Alignment explanation
Indices: 74292193--74292401 Score: 203
Period size: 80 Copynumber: 2.6 Consensus size: 79
74292183 TCGAATGATG
** * * *
74292193 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATATCCGGACTAAGAT-CCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCATTTGAAC-GAGTAG-CTAAATCCGG-TTAAG-TCCCGAAGGCA
74292255 TTTGTGCGAGTTACTAAA
62 TTTGTGCGAGTTACTAAA
* **
74292273 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTAAATCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAG-TAGCTAAATCC-GGTTAAGTCCCGAAGGCATT
74292337 TGTGCGAGTTACTATAA
64 TGTGCGAGTTACTA-AA
* ** * *
74292354 -CCGGGCTATGTCCCGATTGTATTTGAACGAGTAGCTATATCCGGTTAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTAAATCCGGTTAA
74292402 ACTCCGAAGG
Statistics
Matches: 110, Mismatches: 12, Indels: 15
0.80 0.09 0.11
Matches are distributed among these distances:
79 9 0.08
80 89 0.81
81 12 0.11
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTAAATCCGGTTAAGTCCCGAAGGCATTTG
TGCGAGTTACTAAA
Found at i:74300855 original size:43 final size:42
Alignment explanation
Indices: 74300792--74300911 Score: 134
Period size: 43 Copynumber: 2.8 Consensus size: 42
74300782 TACCGTACCA
* * * *
74300792 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCGTATCG
1 ATGCCATAGCCCAAACATGGTCTTACATGTAATCTCATATCG
**
74300834 ATGCCAATAGCCCAGCCATGGTCTTACATG-AAGTCTCATATCG
1 ATGCC-ATAGCCCAAACATGGTCTTACATGTAA-TCTCATATCG
* * *
74300877 ATGCCATATCCCAAATATGGTCTTACACGTAATCT
1 ATGCCATAGCCCAAACATGGTCTTACATGTAATCT
74300912 TAATAACCCT
Statistics
Matches: 66, Mismatches: 9, Indels: 6
0.81 0.11 0.07
Matches are distributed among these distances:
42 29 0.44
43 37 0.56
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (42 bp):
ATGCCATAGCCCAAACATGGTCTTACATGTAATCTCATATCG
Found at i:74308902 original size:46 final size:46
Alignment explanation
Indices: 74308850--74309025 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
74308840 TGGTTGAGCA
*
74308850 TCCGAACTCGTCGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
74308896 TTCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
74308941 CATCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
74308989 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
74309026 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.58
47 26 0.24
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:74309006 original size:93 final size:93
Alignment explanation
Indices: 74308847--74309017 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
74308837 GGATGGTTGA
* **
74308847 GCATCCGAACTCGTCGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTCGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
74308912 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * *
74308940 GCATCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTCGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
74309005 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
74309018 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTCGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:74310916 original size:46 final size:46
Alignment explanation
Indices: 74310863--74311034 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
74310853 AACCCGCCCC
*
74310863 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
* *
74310909 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCA
* * * * * *
74310957 TCA-CGAACTCGGACTCAACTCAATGAGTTCAGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
74311002 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
74311035 ATGCTCAACC
Statistics
Matches: 102, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 1 0.01
45 2 0.02
46 58 0.57
47 26 0.25
48 3 0.03
49 1 0.01
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
Found at i:74311027 original size:93 final size:93
Alignment explanation
Indices: 74310868--74311038 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
74310858 GCCCCTAAGT
* * *
74310868 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
74310933 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* *
74310961 GAACTCGGACTCAACTCAATGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
74311026 CGAGTTCGGATGC
66 CGAGTTCGGATGC
74311039 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:74312385 original size:2 final size:2
Alignment explanation
Indices: 74312378--74312417 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
74312368 CAAAATAAAC
74312378 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
74312418 TAGTCCTACA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:74314376 original size:25 final size:25
Alignment explanation
Indices: 74314307--74314435 Score: 134
Period size: 25 Copynumber: 5.2 Consensus size: 25
74314297 TGCCACTGAA
* * *
74314307 GCTTTATATAATATTCACCAGAAAG
1 GCTTTACAGAATATTCACCACAAAG
* * * *
74314332 GCTTTATAAGGA-GTTCACCACAAAT
1 GCTTTA-CAGAATATTCACCACAAAG
*
74314357 GCTTTACAGAATATTTACCACAAAG
1 GCTTTACAGAATATTCACCACAAAG
* *
74314382 GCTTTACAGAGTATTCGCCACAAAG
1 GCTTTACAGAATATTCACCACAAAG
* *
74314407 GCTTTATAGAATATTCACTACAAAG
1 GCTTTACAGAATATTCACCACAAAG
74314432 GCTT
1 GCTT
74314436 GGTTTGCTTT
Statistics
Matches: 84, Mismatches: 18, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
24 3 0.04
25 79 0.94
26 2 0.02
ACGTcount: A:0.36, C:0.19, G:0.15, T:0.29
Consensus pattern (25 bp):
GCTTTACAGAATATTCACCACAAAG
Found at i:74314382 original size:50 final size:50
Alignment explanation
Indices: 74314307--74314435 Score: 161
Period size: 50 Copynumber: 2.6 Consensus size: 50
74314297 TGCCACTGAA
* * * *
74314307 GCTTTATATAATATTCACCAGAAAGGCTTTATA-AGGAGTTCACCACAAAT
1 GCTTTATAGAATATTCACCACAAAGGCTTTACAGAGGA-TTCACCACAAAG
* * * *
74314357 GCTTTACAGAATATTTACCACAAAGGCTTTACAGAGTATTCGCCACAAAG
1 GCTTTATAGAATATTCACCACAAAGGCTTTACAGAGGATTCACCACAAAG
*
74314407 GCTTTATAGAATATTCACTACAAAGGCTT
1 GCTTTATAGAATATTCACCACAAAGGCTT
74314436 GGTTTGCTTT
Statistics
Matches: 67, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
50 64 0.96
51 3 0.04
ACGTcount: A:0.36, C:0.19, G:0.15, T:0.29
Consensus pattern (50 bp):
GCTTTATAGAATATTCACCACAAAGGCTTTACAGAGGATTCACCACAAAG
Found at i:74316252 original size:28 final size:30
Alignment explanation
Indices: 74316197--74316254 Score: 86
Period size: 28 Copynumber: 2.0 Consensus size: 30
74316187 TCTTTTTTTC
74316197 CACTTAATTTGTTTTCATTTATAAATTATA
1 CACTTAATTTGTTTTCATTTATAAATTATA
74316227 CACTATAATTTG-TTT-A-TTATAAATTATA
1 CACT-TAATTTGTTTTCATTTATAAATTATA
74316255 AAATTATTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
28 12 0.44
29 1 0.04
30 7 0.26
31 7 0.26
ACGTcount: A:0.36, C:0.09, G:0.03, T:0.52
Consensus pattern (30 bp):
CACTTAATTTGTTTTCATTTATAAATTATA
Found at i:74319885 original size:47 final size:47
Alignment explanation
Indices: 74319831--74319974 Score: 189
Period size: 47 Copynumber: 3.1 Consensus size: 47
74319821 GATTTTATGA
** * * *
74319831 GATGAATGTGAATGTGTATATATGAGATAAGGCCTAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
*
74319878 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* * ** *
74319925 GATGAATGTAAACATGCATATGTGTGATAAGGTAGAATGGCTAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
74319972 GAT
1 GAT
74319975 AAACGTGGAA
Statistics
Matches: 87, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 87 1.00
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.28
Consensus pattern (47 bp):
GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
Found at i:74322374 original size:40 final size:39
Alignment explanation
Indices: 74322310--74322497 Score: 223
Period size: 39 Copynumber: 4.8 Consensus size: 39
74322300 GCTACTCGTT
* * * ** *
74322310 CAAACGCCTTCGGGACATAGCCCGGTTATGGTAACCCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATATCATAACTCGCA
* *
74322350 CAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATATCATAACTCGCA
*
74322390 CAATTGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
* * * * *
74322429 CAATTGCCTTCGGGCTTAGCCCGGATGTCACAATTTGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
*
74322468 CAATTGCCTTCGGGCTTAGCCCGGATATCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCA
74322498 CTCGAACATT
Statistics
Matches: 132, Mismatches: 16, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
39 87 0.66
40 45 0.34
ACGTcount: A:0.24, C:0.31, G:0.22, T:0.23
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
Found at i:74322425 original size:39 final size:39
Alignment explanation
Indices: 74322346--74322498 Score: 243
Period size: 39 Copynumber: 3.9 Consensus size: 39
74322336 TATGGTAACC
* *
74322346 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
*
74322386 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
74322425 CGCACAATTGCCTTCGGGCTTAGCCCGGATGTCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
74322464 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
74322499 TCGAACATTA
Statistics
Matches: 105, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 88 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.31, G:0.21, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:74322476 original size:78 final size:79
Alignment explanation
Indices: 74322315--74322497 Score: 260
Period size: 78 Copynumber: 2.3 Consensus size: 79
74322305 TCGTTCAAAC
* * **
74322315 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATC
74322380 ACAACTCGCACAATT
65 ACAACTCGCACAATT
* * * *
74322395 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGATGTCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATCA
* *
74322459 CAATTTGCACAATT
66 CAACTCGCACAATT
74322473 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
74322498 CTCGAACATT
Statistics
Matches: 93, Mismatches: 10, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
78 51 0.55
79 33 0.35
80 9 0.10
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (79 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATCA
CAACTCGCACAATT
Found at i:74330785 original size:66 final size:68
Alignment explanation
Indices: 74330709--74330895 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
74330699 TAGTACCACT
*
74330709 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
74330771 CACG
65 CACG
74330775 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
74330840 ATCACG
63 ATCACG
74330846 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
74330896 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:74330820 original size:71 final size:71
Alignment explanation
Indices: 74330732--74330895 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
74330722 CGATTTGTCT
74330732 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
74330797 CTTTCA
66 CTTTCA
74330803 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
74330868 CTTTCA
66 CTTTCA
74330874 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
74330896 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:74330933 original size:71 final size:70
Alignment explanation
Indices: 74330732--74330929 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
74330722 CGATTTGTCT
* * *
74330732 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
74330797 CTTTCA
65 CTTTCA
* * *
74330803 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
74330868 CTTTCA
65 CTTTCA
* *
74330874 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
74330930 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:74338324 original size:66 final size:68
Alignment explanation
Indices: 74338248--74338434 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
74338238 TAGTACCACT
*
74338248 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
74338310 CACG
65 CACG
74338314 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
74338379 ATCACG
63 ATCACG
74338385 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
74338435 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:74338359 original size:71 final size:71
Alignment explanation
Indices: 74338271--74338434 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
74338261 CGATTTGTCT
74338271 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
74338336 CTTTCA
66 CTTTCA
74338342 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
74338407 CTTTCA
66 CTTTCA
74338413 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
74338435 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:74338472 original size:71 final size:70
Alignment explanation
Indices: 74338271--74338468 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
74338261 CGATTTGTCT
* * *
74338271 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
74338336 CTTTCA
65 CTTTCA
* * *
74338342 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
74338407 CTTTCA
65 CTTTCA
* *
74338413 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
74338469 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:74345881 original size:66 final size:68
Alignment explanation
Indices: 74345805--74345991 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
74345795 TAGTACCACT
*
74345805 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
74345867 CACG
65 CACG
74345871 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
74345936 ATCACG
63 ATCACG
74345942 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
74345992 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:74345916 original size:71 final size:71
Alignment explanation
Indices: 74345828--74345991 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
74345818 CGATTTGTCT
74345828 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
74345893 CTTTCA
66 CTTTCA
74345899 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
74345964 CTTTCA
66 CTTTCA
74345970 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
74345992 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:74346029 original size:71 final size:70
Alignment explanation
Indices: 74345828--74346025 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
74345818 CGATTTGTCT
* * *
74345828 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
74345893 CTTTCA
65 CTTTCA
* * *
74345899 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
74345964 CTTTCA
65 CTTTCA
* *
74345970 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
74346026 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:74352163 original size:39 final size:39
Alignment explanation
Indices: 74352078--74352201 Score: 167
Period size: 39 Copynumber: 3.2 Consensus size: 39
74352068 CCGAGTCCAA
* * * * * *
74352078 TTTCTAGCACAAAGCCTGCGGGACTTTAAGCCCGGATATA
1 TTTCCAGCACATAGCCTGC-GGACCTCAAGTCCGGATATG
74352118 TTTCCAGCACATAGCCTGCGGACCTCAAGTCCGGATATG
1 TTTCCAGCACATAGCCTGCGGACCTCAAGTCCGGATATG
* *
74352157 TTTCCAGTACGTAGCCTGCGGACCTCAAGTCCGGATATG
1 TTTCCAGCACATAGCCTGCGGACCTCAAGTCCGGATATG
74352196 TTTCCA
1 TTTCCA
74352202 AGTATCATGC
Statistics
Matches: 76, Mismatches: 8, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
39 59 0.78
40 17 0.22
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (39 bp):
TTTCCAGCACATAGCCTGCGGACCTCAAGTCCGGATATG
Found at i:74359515 original size:2 final size:2
Alignment explanation
Indices: 74359505--74359558 Score: 83
Period size: 2 Copynumber: 27.0 Consensus size: 2
74359495 TCATCCACAC
*
74359505 AT AT GT AT AT AT AT AT -T GAT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT -AT AT AT AT AT AT AT AT AT AT AT AT
74359547 AT AT AT AT AT AT
1 AT AT AT AT AT AT
74359559 CATTCTTTGA
Statistics
Matches: 48, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
1 1 0.02
2 46 0.96
3 1 0.02
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (2 bp):
AT
Found at i:74359786 original size:40 final size:39
Alignment explanation
Indices: 74359736--74359860 Score: 115
Period size: 39 Copynumber: 3.2 Consensus size: 39
74359726 CCCGAGTCCA
* * * *
74359736 ATTTCTAGCACAAAGCTTGCGAGACTTTAAGCCCAGATAT
1 ATTTCCAGCACAAAGCCTGCG-GACCTCAAGCCCAGATAT
* * *
74359776 ATTTCCAGCACATAGCCTGCGGACCTCAAGTCCGGATAT
1 ATTTCCAGCACAAAGCCTGCGGACCTCAAGCCCAGATAT
* * ** * *
74359815 GTTTCCAGTACGTAGCCTGCGGACCTCAAGTCCGGATAT
1 ATTTCCAGCACAAAGCCTGCGGACCTCAAGCCCAGATAT
*
74359854 GTTTCCA
1 ATTTCCA
74359861 AGTATCATGC
Statistics
Matches: 75, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 57 0.76
40 18 0.24
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (39 bp):
ATTTCCAGCACAAAGCCTGCGGACCTCAAGCCCAGATAT
Found at i:74359820 original size:39 final size:39
Alignment explanation
Indices: 74359771--74359860 Score: 153
Period size: 39 Copynumber: 2.3 Consensus size: 39
74359761 TTTAAGCCCA
*
74359771 GATATATTTCCAGCACATAGCCTGCGGACCTCAAGTCCG
1 GATATGTTTCCAGCACATAGCCTGCGGACCTCAAGTCCG
* *
74359810 GATATGTTTCCAGTACGTAGCCTGCGGACCTCAAGTCCG
1 GATATGTTTCCAGCACATAGCCTGCGGACCTCAAGTCCG
74359849 GATATGTTTCCA
1 GATATGTTTCCA
74359861 AGTATCATGC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 48 1.00
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.27
Consensus pattern (39 bp):
GATATGTTTCCAGCACATAGCCTGCGGACCTCAAGTCCG
Found at i:74378820 original size:19 final size:19
Alignment explanation
Indices: 74378796--74378843 Score: 96
Period size: 19 Copynumber: 2.5 Consensus size: 19
74378786 AAGCTTACAA
74378796 TTTCATATATAACATATAC
1 TTTCATATATAACATATAC
74378815 TTTCATATATAACATATAC
1 TTTCATATATAACATATAC
74378834 TTTCATATAT
1 TTTCATATAT
74378844 GAACTTTATC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.40, C:0.15, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCATATATAACATATAC
Found at i:74379390 original size:41 final size:45
Alignment explanation
Indices: 74379281--74379436 Score: 157
Period size: 45 Copynumber: 3.6 Consensus size: 45
74379271 ATATTGTACA
* * * * *
74379281 ATGCCAACGTCCCAGACGTGGTCTTATATGTAATCAC--ATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAACCACATATATCG
* * *
74379324 ATGCCACTGTCCCAGACA-GGGCTTACACG-AATCA-A-ATA-CG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAACCACATATATCG
*
74379364 ATG-CAGATGTCCCAAACATGGTCTTACACGTAACCACATATATCG
1 ATGCCA-ATGTCCCAGACATGGTCTTACACGTAACCACATATATCG
*
74379409 ATGCCAACGTCCCAGACATGGTCTTACA
1 ATGCCAATGTCCCAGACATGGTCTTACA
74379437 TGAGTACACA
Statistics
Matches: 93, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
39 2 0.02
40 15 0.16
41 18 0.19
42 12 0.13
43 16 0.17
44 3 0.03
45 25 0.27
46 2 0.02
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.23
Consensus pattern (45 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAACCACATATATCG
Found at i:74388406 original size:26 final size:26
Alignment explanation
Indices: 74388377--74388429 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
74388367 TCTATGGATG
* * * *
74388377 AATATTTCTATATTAGGGATAGATAT
1 AATATATCTATATCAAGGATAAATAT
74388403 AATATATCTATATCAAGGATAAATAT
1 AATATATCTATATCAAGGATAAATAT
74388429 A
1 A
74388430 CTAAGTCGAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.45, C:0.06, G:0.11, T:0.38
Consensus pattern (26 bp):
AATATATCTATATCAAGGATAAATAT
Found at i:74391964 original size:29 final size:29
Alignment explanation
Indices: 74391925--74392004 Score: 108
Period size: 29 Copynumber: 2.7 Consensus size: 29
74391915 CTTAATAATC
*
74391925 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
74391955 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
74391984 AGCCCGCACACTTAGTGCCAT
1 AACCCGCACACTTAGTGCCAT
74392005 TCTCTCAACC
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 39 0.87
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.25
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:74399868 original size:29 final size:29
Alignment explanation
Indices: 74399829--74399908 Score: 108
Period size: 29 Copynumber: 2.7 Consensus size: 29
74399819 CTTAATAATC
*
74399829 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
74399859 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
74399888 AGCCCGCACACTTAGTGCCAT
1 AACCCGCACACTTAGTGCCAT
74399909 TCTCTCAACC
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 39 0.87
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.25
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:74411365 original size:32 final size:32
Alignment explanation
Indices: 74411329--74411390 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
74411319 TAGGGTTCAG
*
74411329 TCTTCGTTGTCCATCAATTGTCCCTTTCTTGA
1 TCTTCGTTGTCCATCAATTGTCCCTGTCTTGA
74411361 TCTTCGTTGTCCATCAATTGTCCCTGTCTT
1 TCTTCGTTGTCCATCAATTGTCCCTGTCTT
74411391 ACCATCTTCT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.11, C:0.29, G:0.13, T:0.47
Consensus pattern (32 bp):
TCTTCGTTGTCCATCAATTGTCCCTGTCTTGA
Found at i:74420676 original size:25 final size:25
Alignment explanation
Indices: 74420613--74420682 Score: 77
Period size: 25 Copynumber: 2.8 Consensus size: 25
74420603 CAACCTTTAC
*
74420613 GAGTTCACCGATTCTCAGCTCATAT
1 GAGTTTACCGATTCTCAGCTCATAT
* * * *
74420638 GAGCTTATCGATTCTTAGCTCGTAT
1 GAGTTTACCGATTCTCAGCTCATAT
* *
74420663 GAGTTTACCAATTCACAGCT
1 GAGTTTACCGATTCTCAGCT
74420683 TGTGAGAGCA
Statistics
Matches: 35, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.34
Consensus pattern (25 bp):
GAGTTTACCGATTCTCAGCTCATAT
Found at i:74420716 original size:25 final size:25
Alignment explanation
Indices: 74420621--74420719 Score: 85
Period size: 25 Copynumber: 4.0 Consensus size: 25
74420611 ACGAGTTCAC
* *
74420621 CGATTC-TCAGCTCATATGAGCTTAT
1 CGATTCAT-AGCTCGTATGAGCATAT
* ** *
74420646 CGATTCTTAGCTCGTATGAGTTTAC
1 CGATTCATAGCTCGTATGAGCATAT
* * *
74420671 CAATTCACAGCTTGTGA-GAGCATAT
1 CGATTCATAGCTCGT-ATGAGCATAT
74420696 CGATTCATAGCTCGTATGAGCATA
1 CGATTCATAGCTCGTATGAGCATA
74420720 CATGTACAGG
Statistics
Matches: 58, Mismatches: 13, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
24 1 0.02
25 55 0.95
26 2 0.03
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.33
Consensus pattern (25 bp):
CGATTCATAGCTCGTATGAGCATAT
Found at i:74424705 original size:57 final size:56
Alignment explanation
Indices: 74424638--74424766 Score: 186
Period size: 57 Copynumber: 2.3 Consensus size: 56
74424628 GGGTTTAGCC
74424638 TGGACTGGTAATCCTAATCAAGCTTTTTGAGCATACACTATATAAAAGAATTAAACA
1 TGGACTGGTAATCCTAATCAAGCTTTTTGAGCATACACTATAT-AAAGAATTAAACA
* * * * * * *
74424695 TGGACTGGTAATCCTAATTAAGCTTTTTGAGCATCCGCTATATAAAGGATTTAGCC
1 TGGACTGGTAATCCTAATCAAGCTTTTTGAGCATACACTATATAAAGAATTAAACA
74424751 TGGACTGGTAATCCTA
1 TGGACTGGTAATCCTA
74424767 TCATACGACA
Statistics
Matches: 65, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
56 25 0.38
57 40 0.62
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
Consensus pattern (56 bp):
TGGACTGGTAATCCTAATCAAGCTTTTTGAGCATACACTATATAAAGAATTAAACA
Found at i:74436080 original size:19 final size:19
Alignment explanation
Indices: 74436056--74436092 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
74436046 TTGTGTGTTC
74436056 TTTATTATTATTATTATAT
1 TTTATTATTATTATTATAT
* *
74436075 TTTATTTTTATTTTTATA
1 TTTATTATTATTATTATA
74436093 AATTGGTATC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (19 bp):
TTTATTATTATTATTATAT
Found at i:74448065 original size:41 final size:41
Alignment explanation
Indices: 74448020--74448137 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
74448010 TGAAAGATAA
74448020 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
74448061 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
74448091 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
74448132 ATGTAG
1 ATGTAG
74448138 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:74448076 original size:71 final size:71
Alignment explanation
Indices: 74447988--74448151 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
74447978 GAGATGTATC
74447988 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
74448053 AGGACA
66 AGGACA
74448059 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
74448124 AGGACA
66 AGGACA
74448130 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
74448152 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:74457712 original size:28 final size:27
Alignment explanation
Indices: 74457649--74457718 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
74457639 ATAGTGAGTC
*
74457649 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
74457676 CGCACACTTAGTGCTACATGATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
74457704 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
74457719 GTACAAGTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:74465647 original size:28 final size:27
Alignment explanation
Indices: 74465584--74465653 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
74465574 ATAGTGAGTC
*
74465584 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
74465611 CGCACACTTAGTGCTACATGATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
74465639 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
74465654 GTACAAGTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:74473584 original size:28 final size:27
Alignment explanation
Indices: 74473521--74473590 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
74473511 ATAGTGAGTC
*
74473521 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
74473548 CGCACACTTAGTGCTACATGATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
74473576 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
74473591 GTACAAGTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:74476030 original size:61 final size:61
Alignment explanation
Indices: 74475955--74476084 Score: 224
Period size: 61 Copynumber: 2.1 Consensus size: 61
74475945 GTGACTTGGC
* *
74475955 CATGTGTCTTCAATTTGTTCTTGAGTGATAAACAGAGAGTTACATGGGATTAGGACACGGG
1 CATGTGACTTCAATTTGTTCTTGAGTGATAAAAAGAGAGTTACATGGGATTAGGACACGGG
**
74476016 CATGTGACTTCAATTTGTTCTTGAGTGATAAAAAGAGAGTTACATGGGATTTTGACACGGG
1 CATGTGACTTCAATTTGTTCTTGAGTGATAAAAAGAGAGTTACATGGGATTAGGACACGGG
74476077 CATGTGAC
1 CATGTGAC
74476085 CCCTGTTTAG
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
61 65 1.00
ACGTcount: A:0.28, C:0.13, G:0.27, T:0.32
Consensus pattern (61 bp):
CATGTGACTTCAATTTGTTCTTGAGTGATAAAAAGAGAGTTACATGGGATTAGGACACGGG
Found at i:74478141 original size:27 final size:26
Alignment explanation
Indices: 74478085--74478141 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
74478075 CAACCTTAAC
* * *
74478085 CCTAGGGGTATATCAGTAATTTTGCT
1 CCTAGGGGTAAATCAGTAATTTTCCA
* *
74478111 CCTAGTGGTAAATCTGTAAATTTTCCA
1 CCTAGGGGTAAATCAGT-AATTTTCCA
74478138 CCTA
1 CCTA
74478142 TAAAGGTATT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 14 0.56
27 11 0.44
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.37
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTTTCCA
Found at i:74483926 original size:24 final size:24
Alignment explanation
Indices: 74483899--74483947 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
74483889 TATACAAAAG
74483899 AATGAGTATACCATTTAAACCCTT
1 AATGAGTATACCATTTAAACCCTT
*
74483923 AATGAGTATACTATTTAAACCCTT
1 AATGAGTATACCATTTAAACCCTT
74483947 A
1 A
74483948 CATTGGCTAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.39, C:0.18, G:0.08, T:0.35
Consensus pattern (24 bp):
AATGAGTATACCATTTAAACCCTT
Found at i:74489152 original size:40 final size:40
Alignment explanation
Indices: 74489049--74489161 Score: 109
Period size: 40 Copynumber: 2.8 Consensus size: 40
74489039 TCATAATAAA
* * * *
74489049 CCGAAACTATCTCAATATTGCACACTTAGTGCCACATATAG
1 CCGAAGCTATTTCAA-ATAGCACACTTAGTGCTACATATAG
* * * * **
74489090 CCAAAGCTATTCCAATTAGCACACTCAGTGCTATTTATAG
1 CCGAAGCTATTTCAAATAGCACACTTAGTGCTACATATAG
* *
74489130 CCGAAGCTATTTCAAATCGCACATTTAGTGCT
1 CCGAAGCTATTTCAAATAGCACACTTAGTGCT
74489162 GAACATAGTC
Statistics
Matches: 56, Mismatches: 16, Indels: 1
0.77 0.22 0.01
Matches are distributed among these distances:
40 45 0.80
41 11 0.20
ACGTcount: A:0.32, C:0.26, G:0.13, T:0.29
Consensus pattern (40 bp):
CCGAAGCTATTTCAAATAGCACACTTAGTGCTACATATAG
Found at i:74491150 original size:37 final size:37
Alignment explanation
Indices: 74491091--74491199 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
74491081 AGCTCAGACG
* *
74491091 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
74491128 AAATCTCCACACGTAGTCATCGGGTCTTACCCGAACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
74491165 TAATCTCCACACGTAGTCATCGAGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
74491200 ATATATTTCC
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:74491469 original size:48 final size:48
Alignment explanation
Indices: 74491345--74491481 Score: 213
Period size: 50 Copynumber: 2.8 Consensus size: 48
74491335 GCACATCGCC
* *
74491345 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTTACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
74491393 TATATATATTTCACATT-GACCATTCGGCTTTACCACATATACATATCTCA
1 TACATAT-TTT-ACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
74491443 TACATATTTTACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTTACATTAGCCATTCGGCTTTACCACATATA
74491482 TGCATGTTCA
Statistics
Matches: 81, Mismatches: 4, Indels: 8
0.87 0.04 0.09
Matches are distributed among these distances:
48 33 0.41
49 7 0.09
50 41 0.51
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (48 bp):
TACATATTTTACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:74491530 original size:47 final size:47
Alignment explanation
Indices: 74491453--74491644 Score: 267
Period size: 47 Copynumber: 4.1 Consensus size: 47
74491443 TACATATTTT
* * * * *
74491453 ACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCACC
1 ACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATC
* * *
74491500 CCATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATC
1 ACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATC
74491547 ACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATC
1 ACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATC
* * ** *
74491594 ACATTGGCCATTCGGCCTTATCTCATATATACACATACACATTCATC
1 ACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATC
74491641 ACAT
1 ACAT
74491645 AAAATCCTAA
Statistics
Matches: 129, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 129 1.00
ACGTcount: A:0.27, C:0.30, G:0.11, T:0.32
Consensus pattern (47 bp):
ACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATC
Found at i:74491571 original size:22 final size:22
Alignment explanation
Indices: 74491544--74491615 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
74491534 GCTCACATTC
74491544 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
74491566 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
74491590 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
74491613 ATC
1 ATC
74491616 TCATATATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:74495556 original size:40 final size:40
Alignment explanation
Indices: 74495508--74495755 Score: 370
Period size: 40 Copynumber: 6.2 Consensus size: 40
74495498 GCCCGAATAC
* * * *
74495508 ACATCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
* * * *
74495548 ATAACACCAGCACGAATGCTCTTCGGAACTTAGCCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
* *
74495588 ACATCACTAGCACGAATGCTCTTTGGGACTTAGTCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
*
74495628 ACATCACTAGCACGAATGCTCTTCGGGACTTAGTCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
* *
74495668 ACATCACTAGCACAAATGCTCTTCGGGACTTAGTCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
74495708 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
*
74495748 ATATCACT
1 ACATCACT
74495756 CTCAATTCTC
Statistics
Matches: 191, Mismatches: 17, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 191 1.00
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
Found at i:74498209 original size:40 final size:40
Alignment explanation
Indices: 74498164--74498388 Score: 272
Period size: 40 Copynumber: 5.6 Consensus size: 40
74498154 CTTGCACAAG
* * *
74498164 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * * *
74498204 GCCTTCGGGACTTAGCCCAGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
74498244 GCCTTCGGGTTTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
74498284 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
74498324 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
74498365 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
74498389 CATTCGAATA
Statistics
Matches: 157, Mismatches: 25, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 1 0.01
40 127 0.81
41 29 0.18
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:74498259 original size:80 final size:80
Alignment explanation
Indices: 74498128--74498388 Score: 285
Period size: 80 Copynumber: 3.3 Consensus size: 80
74498118 CTCAAGAAAT
* * * * * * * *
74498128 CTTCGGAATTTAG-CCGGATATAACTACTTGCAC-AAGGCCTTCGGGTCTTAGCCCGGATGTGGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
74498191 CACTAGCATAAATGC
66 CACTAGCACAAATGC
* * * * *
74498206 CTTCGGGACTTAGCCCAGATATAATC-GCTAGCACAAATGCCTTCGGGTTTTAGCCCGGATATAA
1 CTTCGGGACTTAGCCCGGATAT-AGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
*
74498270 TCGCTAGCACAAATGC
65 TCACTAGCACAAATGC
* * * * * *
74498286 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACGAATGCCTTCGGATCTTAGTCCGGTTATAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
74498351 CACCTAGCACAAAAGC
66 CA-CTAGCACAAATGC
74498367 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
74498389 CATTCGAATA
Statistics
Matches: 151, Mismatches: 27, Indels: 7
0.82 0.15 0.04
Matches are distributed among these distances:
78 11 0.07
79 15 0.10
80 92 0.61
81 33 0.22
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:74500478 original size:37 final size:37
Alignment explanation
Indices: 74500419--74500527 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
74500409 AGCTCAGACG
* *
74500419 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
74500456 AAATCTCCACACGTAGTCATCGGGTCTTACCCGAACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
74500493 TAATCTCCACACGTAGTCATCGAGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
74500528 ATATATTTCC
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:74500797 original size:48 final size:48
Alignment explanation
Indices: 74500673--74500809 Score: 213
Period size: 50 Copynumber: 2.8 Consensus size: 48
74500663 GCACATCGCC
* *
74500673 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTTACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
74500721 TATATATATTTCACATT-GACCATTCGGCTTTACCACATATACATATCTCA
1 TACATAT-TTT-ACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
74500771 TACATATTTTACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTTACATTAGCCATTCGGCTTTACCACATATA
74500810 TGCATGTTCA
Statistics
Matches: 81, Mismatches: 4, Indels: 8
0.87 0.04 0.09
Matches are distributed among these distances:
48 33 0.41
49 7 0.09
50 41 0.51
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (48 bp):
TACATATTTTACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:74500858 original size:47 final size:47
Alignment explanation
Indices: 74500781--74500972 Score: 267
Period size: 47 Copynumber: 4.1 Consensus size: 47
74500771 TACATATTTT
* * * * *
74500781 ACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCACC
1 ACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATC
* * *
74500828 CCATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATC
1 ACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATC
74500875 ACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATC
1 ACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATC
* * ** *
74500922 ACATTGGCCATTCGGCCTTATCTCATATATACACATACACATTCATC
1 ACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATC
74500969 ACAT
1 ACAT
74500973 AAAATCCTAA
Statistics
Matches: 129, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 129 1.00
ACGTcount: A:0.27, C:0.30, G:0.11, T:0.32
Consensus pattern (47 bp):
ACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATC
Found at i:74500899 original size:22 final size:22
Alignment explanation
Indices: 74500872--74500943 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
74500862 GCTCACATTC
74500872 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
74500894 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
74500918 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
74500941 ATC
1 ATC
74500944 TCATATATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:74504889 original size:40 final size:40
Alignment explanation
Indices: 74504841--74505088 Score: 370
Period size: 40 Copynumber: 6.2 Consensus size: 40
74504831 GCCCGAATAC
* * * *
74504841 ACATCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
* * * *
74504881 ATAACACCAGCACGAATGCTCTTCGGAACTTAGCCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
* *
74504921 ACATCACTAGCACGAATGCTCTTTGGGACTTAGTCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
*
74504961 ACATCACTAGCACGAATGCTCTTCGGGACTTAGTCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
* *
74505001 ACATCACTAGCACAAATGCTCTTCGGGACTTAGTCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
74505041 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
*
74505081 ATATCACT
1 ACATCACT
74505089 CTCAATTCTC
Statistics
Matches: 191, Mismatches: 17, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 191 1.00
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
Found at i:74507542 original size:40 final size:40
Alignment explanation
Indices: 74507497--74507721 Score: 272
Period size: 40 Copynumber: 5.6 Consensus size: 40
74507487 CTTGCACAAG
* * *
74507497 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * * *
74507537 GCCTTCGGGACTTAGCCCAGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
74507577 GCCTTCGGGTTTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
74507617 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
74507657 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
74507698 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
74507722 CATTCGAATA
Statistics
Matches: 157, Mismatches: 25, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 1 0.01
40 127 0.81
41 29 0.18
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:74507592 original size:80 final size:80
Alignment explanation
Indices: 74507461--74507721 Score: 285
Period size: 80 Copynumber: 3.3 Consensus size: 80
74507451 CTCAAGAAAT
* * * * * * * *
74507461 CTTCGGAATTTAG-CCGGATATAACTACTTGCAC-AAGGCCTTCGGGTCTTAGCCCGGATGTGGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
74507524 CACTAGCATAAATGC
66 CACTAGCACAAATGC
* * * * *
74507539 CTTCGGGACTTAGCCCAGATATAATC-GCTAGCACAAATGCCTTCGGGTTTTAGCCCGGATATAA
1 CTTCGGGACTTAGCCCGGATAT-AGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
*
74507603 TCGCTAGCACAAATGC
65 TCACTAGCACAAATGC
* * * * * *
74507619 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACGAATGCCTTCGGATCTTAGTCCGGTTATAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
74507684 CACCTAGCACAAAAGC
66 CA-CTAGCACAAATGC
74507700 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
74507722 CATTCGAATA
Statistics
Matches: 151, Mismatches: 27, Indels: 7
0.82 0.15 0.04
Matches are distributed among these distances:
78 11 0.07
79 15 0.10
80 92 0.61
81 33 0.22
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:74509808 original size:37 final size:37
Alignment explanation
Indices: 74509749--74509857 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
74509739 AGCTCAGACG
* *
74509749 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
74509786 AAATCTCCACACGTAGTCATCGGGTCTTACCCGAACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
74509823 TAATCTCCACACGTAGTCATCGAGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
74509858 ATATATTTCC
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:74510127 original size:48 final size:49
Alignment explanation
Indices: 74510003--74510139 Score: 224
Period size: 50 Copynumber: 2.8 Consensus size: 49
74509993 GCACATCGCC
*
74510003 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA-A
*
74510053 TATATATTTCACATT-GACCATTCGGCTTTACCACATATACATATCTC-A
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCAA
74510101 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
74510140 TGCATGTTCA
Statistics
Matches: 82, Mismatches: 3, Indels: 6
0.90 0.03 0.07
Matches are distributed among these distances:
48 37 0.45
49 2 0.02
50 43 0.52
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (49 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAA
Found at i:74510188 original size:47 final size:47
Alignment explanation
Indices: 74510109--74510302 Score: 280
Period size: 47 Copynumber: 4.1 Consensus size: 47
74510099 CATACATATT
* * * *
74510109 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * * *
74510156 CCCCATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
74510203 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
74510250 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
74510297 TCACAT
1 TCACAT
74510303 AAAATCCTAA
Statistics
Matches: 131, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 131 1.00
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:74510229 original size:22 final size:22
Alignment explanation
Indices: 74510202--74510273 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
74510192 GCTCACATTC
74510202 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
74510224 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
74510248 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
74510271 ATC
1 ATC
74510274 TCATATATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:74510233 original size:94 final size:94
Alignment explanation
Indices: 74510062--74510302 Score: 281
Period size: 94 Copynumber: 2.6 Consensus size: 94
74510052 ATATATATTT
* * * *
74510062 CACATTGACCATTCGGCTTTA-C-CACATATACATATCTCATACATAT-TTCACATTAGCCATTC
1 CACATTGGCCATTCGGCCTTATCACACATATACACA-CTC--ACAT-TCATCACATTAGCCATTC
* *
74510124 GGCTTTACCACATATATGCATGTTCATATTCAC
62 GGCCTTACCACATATATGCATGTTCACATTCAC
* * ** *
74510157 CCCATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCC
1 CACATTGGCCATTCGGCCTTATCACACATATACACACTCACATTCATCACATTAGCCATTCGGCC
* *
74510222 TTATCACATATATGCATGTTCACATTCAT
66 TTACCACATATATGCATGTTCACATTCAC
* * *
74510251 CACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCACAT
1 CACATTGGCCATTCGGCCTTATCACACATATACACACTCACATTCATCACAT
74510303 AAAATCCTAA
Statistics
Matches: 125, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
93 1 0.01
94 92 0.74
95 18 0.14
96 4 0.03
97 10 0.08
ACGTcount: A:0.27, C:0.29, G:0.10, T:0.33
Consensus pattern (94 bp):
CACATTGGCCATTCGGCCTTATCACACATATACACACTCACATTCATCACATTAGCCATTCGGCC
TTACCACATATATGCATGTTCACATTCAC
Found at i:74516864 original size:5 final size:5
Alignment explanation
Indices: 74516854--74516896 Score: 61
Period size: 5 Copynumber: 8.4 Consensus size: 5
74516844 TCATCTATTT
74516854 ATATA ATATA ATA-A CATATAA ATATA ATATA ATATA ATATA AT
1 ATATA ATATA ATATA -ATAT-A ATATA ATATA ATATA ATATA AT
74516897 TATCAGTATT
Statistics
Matches: 35, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
4 1 0.03
5 29 0.83
6 4 0.11
7 1 0.03
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.37
Consensus pattern (5 bp):
ATATA
Done.