Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 237 of 318
Found at i:74516880 original size:21 final size:21
Alignment explanation
Indices: 74516854--74516895 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
74516844 TCATCTATTT
74516854 ATATAATATAATA-ACATATAA
1 ATATAATATAATATA-ATATAA
74516875 ATATAATATAATATAATATAA
1 ATATAATATAATATAATATAA
74516896 TTATCAGTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 19 0.95
22 1 0.05
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (21 bp):
ATATAATATAATATAATATAA
Found at i:74517953 original size:2 final size:2
Alignment explanation
Indices: 74517946--74517992 Score: 71
Period size: 2 Copynumber: 24.5 Consensus size: 2
74517936 TGCATGAATA
*
74517946 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT GT AT A-
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
74517986 AT AT AT A
1 AT AT AT A
74517993 AAAGTACAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
1 2 0.05
2 39 0.95
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (2 bp):
AT
Found at i:74518692 original size:28 final size:24
Alignment explanation
Indices: 74518623--74518712 Score: 103
Period size: 23 Copynumber: 3.7 Consensus size: 24
74518613 TTATTTAAAC
*
74518623 AAATACTCATA-TTTATATAATTA
1 AAATATTCATATTTTATATAATTA
74518646 AAATATTCATAATTTTATACTAAGTTA
1 AAATATTCAT-ATTTTATA-TAA-TTA
*
74518673 AAATATGTCATA-TTTATATAAATA
1 AAATAT-TCATATTTTATATAATTA
*
74518697 AAATATCCATATTTTA
1 AAATATTCATATTTTA
74518713 CTATCAGTTA
Statistics
Matches: 58, Mismatches: 3, Indels: 11
0.81 0.04 0.15
Matches are distributed among these distances:
23 13 0.22
24 13 0.22
25 9 0.16
26 9 0.16
27 10 0.17
28 4 0.07
ACGTcount: A:0.47, C:0.08, G:0.02, T:0.43
Consensus pattern (24 bp):
AAATATTCATATTTTATATAATTA
Found at i:74525692 original size:28 final size:28
Alignment explanation
Indices: 74525660--74525721 Score: 97
Period size: 28 Copynumber: 2.2 Consensus size: 28
74525650 GCCTGGCCCA
* * *
74525660 TGTCCTTCACACTGCCATGACACGCTCG
1 TGTCCTTCACACGGCCATGACACACCCG
74525688 TGTCCTTCACACGGCCATGACACACCCG
1 TGTCCTTCACACGGCCATGACACACCCG
74525716 TGTCCT
1 TGTCCT
74525722 AGCCCGTGTG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.18, C:0.40, G:0.18, T:0.24
Consensus pattern (28 bp):
TGTCCTTCACACGGCCATGACACACCCG
Found at i:74527857 original size:42 final size:42
Alignment explanation
Indices: 74527810--74527916 Score: 196
Period size: 42 Copynumber: 2.5 Consensus size: 42
74527800 TATTGGTCTC
74527810 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
1 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
74527852 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
1 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
* *
74527894 GGCACTACGTGTGCGGGTTTAAA
1 GGCACTAAGTGTGCGGGTATAAA
74527917 ATTGTACAGC
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 63 1.00
ACGTcount: A:0.29, C:0.15, G:0.34, T:0.22
Consensus pattern (42 bp):
GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
Found at i:74527981 original size:27 final size:28
Alignment explanation
Indices: 74527924--74527993 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
74527914 AAAATTGTAC
**
74527924 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
* *
74527952 AGCACTATGTGTGCG-AGCTGATTTTAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
74527979 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
74527994 GATTCACTAT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 23 0.62
28 14 0.38
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:74529851 original size:47 final size:45
Alignment explanation
Indices: 74529779--74529997 Score: 183
Period size: 47 Copynumber: 4.7 Consensus size: 45
74529769 GGGTAAGGTA
*
74529779 CCGATGTCATGTCCCAGACACAGTCTTACACTAACTCATATCTCATG
1 CCGATG-CATGTCCCAGACA-TGTCTTACACTAACTCATATCTCATG
* *
74529826 TCGATGCCATGTCCCAGACATAGTCTTACACTGACT-ATCATCTCATAG
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTAACTCAT-ATCTCAT-G
** * * *
74529874 CCGATGCATGTCCCAGACATGTCTTACACTGGCTTATATATCAAGG
1 CCGATGCATGTCCCAGACATGTCTTACACTAACTCATATCTC-ATG
* * * * *
74529920 TCGATGCATG-CCCTAAACATGTCTTACACTAGCACTCGTCT-TAATG
1 CCGATGCATGTCCC-AGACATGTCTTACACTA--ACTCATATCTCATG
*
74529966 CCGATGCTAGGTCCCAGACATGGTCTTACACT
1 CCGATGC-ATGTCCCAGACAT-GTCTTACACT
74529998 GGCTCTCATA
Statistics
Matches: 141, Mismatches: 20, Indels: 21
0.77 0.11 0.12
Matches are distributed among these distances:
45 3 0.02
46 52 0.37
47 63 0.45
48 23 0.16
ACGTcount: A:0.26, C:0.29, G:0.16, T:0.28
Consensus pattern (45 bp):
CCGATGCATGTCCCAGACATGTCTTACACTAACTCATATCTCATG
Found at i:74530020 original size:94 final size:92
Alignment explanation
Indices: 74529779--74530046 Score: 228
Period size: 94 Copynumber: 2.9 Consensus size: 92
74529769 GGGTAAGGTA
* * ** * * * *
74529779 CCGATGTCATGTCCCAGACACAGTCTTACACTAACTCATATCTC-ATGTCGATGCCATGTCCCAG
1 CCGATG-CAGGTCCCAGACA-TGTCTTACACTGGCTTATATATCAAGGTCGATG-CATGTCCCAA
* *
74529843 ACATAGTCTTACACT-G-ACT-ATCATCTCATAG
63 ACAT-GTCTTACACTAGCACTCGTC-T-TAAT-G
*
74529874 CCGATGCATGTCCCAGACATGTCTTACACTGGCTTATATATCAAGGTCGATGCATG-CCCTAAAC
1 CCGATGCAGGTCCCAGACATGTCTTACACTGGCTTATATATCAAGGTCGATGCATGTCCC-AAAC
74529938 ATGTCTTACACTAGCACTCGTCTTAATG
65 ATGTCTTACACTAGCACTCGTCTTAATG
** *
74529966 CCGATGCTAGGTCCCAGACATGGTCTTACACTGGCTCTCATA-AT-GTGG-CTGATGCATGTCGC
1 CCGATGC-AGGTCCCAGACAT-GTCTTACACTGGCT-T-ATATATCAAGGTC-GATGCATGTCCC
*
74530028 AGACATGTCTTACACTAGC
61 AAACATGTCTTACACTAGC
74530047 CCACAAATAC
Statistics
Matches: 148, Mismatches: 14, Indels: 23
0.80 0.08 0.12
Matches are distributed among these distances:
92 21 0.14
93 44 0.30
94 67 0.45
95 13 0.09
96 3 0.02
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.28
Consensus pattern (92 bp):
CCGATGCAGGTCCCAGACATGTCTTACACTGGCTTATATATCAAGGTCGATGCATGTCCCAAACA
TGTCTTACACTAGCACTCGTCTTAATG
Found at i:74533667 original size:42 final size:42
Alignment explanation
Indices: 74533587--74533727 Score: 151
Period size: 44 Copynumber: 3.3 Consensus size: 42
74533577 CCAGATGTGC
* * * * *
74533587 TCTTACATGTAATCAAGTATCGATGCCACTATCCCAGACAGGG
1 TCTTACACGAAATCAAATAT-GATGCCAATGTCCCAGACAGGG
* *
74533630 TGTTACACGAAATCAAATATGATGCCAATGTCCCAGACATGG
1 TCTTACACGAAATCAAATATGATGCCAATGTCCCAGACAGGG
*
74533672 TCTTACACGTAAATTTCAAAT-TGATGCCAACGTCCCAGAC-GTGG
1 TCTTACACG-AAA--TCAAATATGATGCCAATGTCCCAGACAG-GG
74533716 TCTTACACGAAA
1 TCTTACACGAAA
74533728 ACACATATTG
Statistics
Matches: 84, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
42 27 0.32
43 22 0.26
44 29 0.35
45 6 0.07
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.26
Consensus pattern (42 bp):
TCTTACACGAAATCAAATATGATGCCAATGTCCCAGACAGGG
Found at i:74533709 original size:44 final size:42
Alignment explanation
Indices: 74533566--74533727 Score: 166
Period size: 43 Copynumber: 3.8 Consensus size: 42
74533556 AACTCGTACA
** * * * *
74533566 ATGCCAACGTCCCAGATGTGCTCTTACATGTAATCAAGTATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGAAATCAAATAT-G
* * *
74533609 ATGCC-ACTATCCCAGACAGGGTGTTACACGAAATCAAATATG
1 ATGCCAAC-GTCCCAGACATGGTCTTACACGAAATCAAATATG
*
74533651 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATTTCAAAT-TG
1 ATGCCAACGTCCCAGACATGGTCTTACACG-AAA--TCAAATATG
*
74533695 ATGCCAACGTCCCAGACGTGGTCTTACACGAAA
1 ATGCCAACGTCCCAGACATGGTCTTACACGAAA
74533728 ACACATATTG
Statistics
Matches: 99, Mismatches: 15, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
42 27 0.27
43 36 0.36
44 30 0.30
45 6 0.06
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGAAATCAAATATG
Found at i:74534339 original size:164 final size:164
Alignment explanation
Indices: 74534095--74534402 Score: 598
Period size: 164 Copynumber: 1.9 Consensus size: 164
74534085 CATTTTAAAA
74534095 ATTAGCTCTCACATTTTCACATTTTAACACTTTAGTCCCTAATTCATAAAATCACAAAATACACA
1 ATTAGCTCTCACATTTTCACATTTTAACACTTTAGTCCCTAATTCATAAAATCACAAAATACACA
* *
74534160 AAATTTCCTTTTTCACATGCTTAGCCGAATTTTCATGAAGTTCATATAAGTCCATATATTTGATT
66 AAATTTCCATTTTCACATGCTTAGCCGAATTTTCATGAAGTTCATATAAGTCCATATATTTCATT
74534225 TATTTTATATTTTACCAAAAACACATATTTACAG
131 TATTTTATATTTTACCAAAAACACATATTTACAG
74534259 ATTAGCTCTCACATTTTCACATTTTAACACTTTAGTCCCTAATTCATAAAATCACAAAATACACA
1 ATTAGCTCTCACATTTTCACATTTTAACACTTTAGTCCCTAATTCATAAAATCACAAAATACACA
74534324 AAATTTCCATTTTCACATGCTTAGCCGAATTTTCATGAAGTTCATATAAGTCCATATATTTCATT
66 AAATTTCCATTTTCACATGCTTAGCCGAATTTTCATGAAGTTCATATAAGTCCATATATTTCATT
74534389 TATTTTATATTTTA
131 TATTTTATATTTTA
74534403 GTCCCTTAAA
Statistics
Matches: 142, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
164 142 1.00
ACGTcount: A:0.35, C:0.19, G:0.06, T:0.40
Consensus pattern (164 bp):
ATTAGCTCTCACATTTTCACATTTTAACACTTTAGTCCCTAATTCATAAAATCACAAAATACACA
AAATTTCCATTTTCACATGCTTAGCCGAATTTTCATGAAGTTCATATAAGTCCATATATTTCATT
TATTTTATATTTTACCAAAAACACATATTTACAG
Found at i:74534934 original size:16 final size:16
Alignment explanation
Indices: 74534910--74534945 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
74534900 ATAGAAAATA
*
74534910 ATATTATGCAATTTTT
1 ATATCATGCAATTTTT
74534926 ATATCATGCAATTTTT
1 ATATCATGCAATTTTT
74534942 ATAT
1 ATAT
74534946 TTTACGTGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.33, C:0.08, G:0.06, T:0.53
Consensus pattern (16 bp):
ATATCATGCAATTTTT
Found at i:74535804 original size:50 final size:49
Alignment explanation
Indices: 74535706--74535970 Score: 256
Period size: 50 Copynumber: 5.4 Consensus size: 49
74535696 CGACGCTATA
* * * * *
74535706 TCCCAGACATGGTCTTATACTG--TCTCATACATCGAAGTCGATGTCATG
1 TCCCAGACATGGTCTTACACTGACTCTCATATAT-GAGGCCGATGCCATG
* *
74535754 TCCCAGACATGGTCTTATACTGACTCTCATATATCGAGACCGATGCCATG
1 TCCCAGACATGGTCTTACACTGACTCTCATATAT-GAGGCCGATGCCATG
* * * *
74535804 TCCCAGACATGGTTTTACACTGGCTCTCATCTATTAGTGCCGATGCCATG
1 TCCCAGACATGGTCTTACACTGACTCTCATATATGAG-GCCGATGCCATG
* * *
74535854 TCCCAAACATGGTCTTACACTAGA-TTTCAGGTCT-TGAGGCCGATGCCATG
1 TCCCAGACATGGTCTTACACT-GACTCTCA--TATATGAGGCCGATGCCATG
* * *
74535904 TCCCGGACATGGTCTTACACTGGCTCTCATA-ATGTGGCCGATG-CATG
1 TCCCAGACATGGTCTTACACTGACTCTCATATATGAGGCCGATGCCATG
* *
74535951 TCCTAGATAT-GTCTTACACT
1 TCCCAGACATGGTCTTACACT
74535971 AGCACACATA
Statistics
Matches: 184, Mismatches: 25, Indels: 18
0.81 0.11 0.08
Matches are distributed among these distances:
46 10 0.05
47 11 0.06
48 33 0.18
49 3 0.02
50 120 0.65
51 4 0.02
52 3 0.02
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (49 bp):
TCCCAGACATGGTCTTACACTGACTCTCATATATGAGGCCGATGCCATG
Found at i:74538786 original size:48 final size:46
Alignment explanation
Indices: 74538682--74538986 Score: 233
Period size: 48 Copynumber: 6.5 Consensus size: 46
74538672 TGTGAGAGCC
* * ** *
74538682 AGTGTAAGACCATGTCTGGGACATGCATCAGCCACATTTCGA-TAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCAGCTAGAGAT-GAGT-GCT
* *
74538729 AATATAAGACCATGTCTGGGACATGGCATCAGCGTAGAGATGAGTGCT
1 AGTGTAAGACCATGTCTGGGACAT-GCATCAGC-TAGAGATGAGTGCT
* *
74538777 AGTGTAAGACCATGTCTGGGACATGGCATCGGCGTAGAGATGAGTGCC
1 AGTGTAAGACCATGTCTGGGACAT-GCATCAGC-TAGAGATGAGTGCT
* * * **
74538825 AGTGTAAGA-CGTGTCTGGGACATGCATCGGCTA-AGCTTCGTGCT
1 AGTGTAAGACCATGTCTGGGACATGCATCAGCTAGAGATGAGTGCT
* * * * *
74538869 AGTGTAAGA-CATGTCTGGGATATGCATCAACACTTATACATGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGCATC-A-GC-TAGAGATGAGTGCT
* * * * *
74538917 AGTGTAAGACTATGTCTGGGACATGGCATCGACCTCGATGAAGA-TAGCC
1 AGTGTAAGACCATGTCTGGGACAT-GCATC-AGCTAGA-GATGAGT-GCT
*
74538966 AGTGTAAGACCACGTCTGGGA
1 AGTGTAAGACCATGTCTGGGA
74538987 TATGACATTG
Statistics
Matches: 210, Mismatches: 37, Indels: 20
0.79 0.14 0.07
Matches are distributed among these distances:
44 33 0.16
45 2 0.01
46 9 0.04
47 37 0.18
48 82 0.39
49 41 0.20
50 6 0.03
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATGCATCAGCTAGAGATGAGTGCT
Found at i:74538912 original size:92 final size:94
Alignment explanation
Indices: 74538682--74538947 Score: 242
Period size: 92 Copynumber: 2.8 Consensus size: 94
74538672 TGTGAGAGCC
** * * * *
74538682 AGTGTAAGACCATGTCTGGGACAT-GCAT-CA-G-CCACATTTCGATAGCCAATATAAGACCATG
1 AGTGTAAGACCATGTCTGGGACATGGCATCCACGTAGACA--T-GAGAGCCAGTGTAAGACTATG
* * **
74538743 TCTGGGACATGGCATCAGCGTAGAGATGAGTGCT
63 TCTGGGACATGGCATCGGC-TA-AGCTTCGTGCT
** * * *
74538777 AGTGTAAGACCATGTCTGGGACATGGCATCGGCGTAGAGATGAGTGCCAGTGTAAGAC-GTGTCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCCACGTAGACATGAGAGCCAGTGTAAGACTATGTCT
74538841 GGGACAT-GCATCGGCTAAGCTTCGTGCT
66 GGGACATGGCATCGGCTAAGCTTCGTGCT
* * * *
74538869 AGTGTAAGA-CATGTCTGGGATAT-GCATCAACACTTATACATGAGAGCTAGTGTAAGACTATGT
1 AGTGTAAGACCATGTCTGGGACATGGCATC--CACGTAGACATGAGAGCCAGTGTAAGACTATGT
74538932 CTGGGACATGGCATCG
64 CTGGGACATGGCATCG
74538948 ACCTCGATGA
Statistics
Matches: 140, Mismatches: 23, Indels: 17
0.78 0.13 0.09
Matches are distributed among these distances:
90 5 0.04
91 13 0.09
92 38 0.27
93 14 0.10
94 13 0.09
95 36 0.26
96 17 0.12
97 1 0.01
98 1 0.01
99 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.24
Consensus pattern (94 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCCACGTAGACATGAGAGCCAGTGTAAGACTATGTCT
GGGACATGGCATCGGCTAAGCTTCGTGCT
Found at i:74545794 original size:47 final size:45
Alignment explanation
Indices: 74545728--74545893 Score: 147
Period size: 47 Copynumber: 3.6 Consensus size: 45
74545718 ATGATAGACC
*
74545728 GTGTAAGACCACGTCTGGGACATGGCATCGGCGTAGAGGTAAGTGCCA
1 GTGTAAGA-CATGTCTGGGACAT-GCATCGGC-TAGAGGTAAGTGCCA
* * * * *
74545776 GTGTAAGACATGTCTGGGACATGCATCAGCCTCGATG-ATGTTAACCA
1 GTGTAAGACATGTCTGGGACATGCATC-GGCTAGAGGTAAG-T-GCCA
* * ** **
74545823 GTGTAAGACGTGTCTGGGACATGCATCGGCTA-AGTTTCGTGCTT
1 GTGTAAGACATGTCTGGGACATGCATCGGCTAGAGGTAAGTGCCA
*
74545867 GTGTAAGACATGTCTTGGACATGCATC
1 GTGTAAGACATGTCTGGGACATGCATC
74545894 AGCACATATA
Statistics
Matches: 96, Mismatches: 18, Indels: 12
0.76 0.14 0.10
Matches are distributed among these distances:
44 26 0.27
45 4 0.04
46 14 0.15
47 44 0.46
48 8 0.08
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (45 bp):
GTGTAAGACATGTCTGGGACATGCATCGGCTAGAGGTAAGTGCCA
Found at i:74545838 original size:94 final size:94
Alignment explanation
Indices: 74545641--74545946 Score: 286
Period size: 94 Copynumber: 3.3 Consensus size: 94
74545631 GGGGTGTTAC
* * * *
74545641 ACCATGTCTAGGACATGGCATCGGCATTGAGATGACG-GCTAGTGTAAGACGTGTCTAGGACACG
1 ACCATGTCTGGGACATGGCATCGGC-TAGAGAT-ACGTGCTAGTGTAAGACATGTCTAGGACATG
74545705 CATCAG-TCGCATCATGATAGACCGTGTAAG
64 CATCAGCTCGCATCATGATAGACCGTGTAAG
* * * * *
74545735 ACCACGTCTGGGACATGGCATCGGCGTAGAGGTAAGTGCCAGTGTAAGACATGTCTGGGACATGC
1 ACCATGTCTGGGACATGGCATCGGC-TAGAGATACGTGCTAGTGTAAGACATGTCTAGGACATGC
* *
74545800 ATCAGCCTCG-ATGATGTTA-ACCAGTGTAAG
65 ATCAG-CTCGCATCATGATAGACC-GTGTAAG
* * * * *
74545830 A-CGTGTCTGGGACAT-GCATCGGCTA-AGTTTCGTGCTTGTGTAAGACATGTCTTGGACATGCA
1 ACCATGTCTGGGACATGGCATCGGCTAGAGATACGTGCTAGTGTAAGACATGTCTAGGACATGCA
* ** * * *
74545892 TCAGCACATATACACGAGAG-CTAGTGTAAG
66 TCAGCTCGCAT-CATGATAGAC-CGTGTAAG
*
74545922 ACCATGTCTGGGACATGGCAGCGGC
1 ACCATGTCTGGGACATGGCATCGGC
74545947 AACTTAACCC
Statistics
Matches: 173, Mismatches: 29, Indels: 20
0.78 0.13 0.09
Matches are distributed among these distances:
90 2 0.01
91 37 0.21
92 14 0.08
93 23 0.13
94 79 0.46
95 15 0.09
96 3 0.02
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.23
Consensus pattern (94 bp):
ACCATGTCTGGGACATGGCATCGGCTAGAGATACGTGCTAGTGTAAGACATGTCTAGGACATGCA
TCAGCTCGCATCATGATAGACCGTGTAAG
Found at i:74549187 original size:55 final size:55
Alignment explanation
Indices: 74549097--74549213 Score: 164
Period size: 55 Copynumber: 2.1 Consensus size: 55
74549087 TCAGTATTGT
* *
74549097 CCACGGTTAGGCCACACGGGCGTGTGCCATAGCCGTG-TCTATAAGTCAATATCGC
1 CCACGGGTAGGCCACACGGGCGTGTGCCATAGCCGTGCCCTA-AAGTCAATATCGC
* * *
74549152 CCACGGGTAGGCCACACGGGCGTGTGTCATGGCCGTGCCCTAAAGTCAATGTCGC
1 CCACGGGTAGGCCACACGGGCGTGTGCCATAGCCGTGCCCTAAAGTCAATATCGC
*
74549207 ACACGGG
1 CCACGGG
74549214 CTGAGGAGGT
Statistics
Matches: 55, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
55 52 0.95
56 3 0.05
ACGTcount: A:0.21, C:0.30, G:0.31, T:0.19
Consensus pattern (55 bp):
CCACGGGTAGGCCACACGGGCGTGTGCCATAGCCGTGCCCTAAAGTCAATATCGC
Found at i:74557532 original size:2 final size:2
Alignment explanation
Indices: 74557525--74557566 Score: 50
Period size: 2 Copynumber: 21.5 Consensus size: 2
74557515 AGATCCAATC
* * *
74557525 AT AT AT AT AT AT AT AT AT TT AT AT A- AA AT AT AT AT AA AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
74557566 A
1 A
74557567 AATAATTATT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:74557565 original size:17 final size:17
Alignment explanation
Indices: 74557535--74557568 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
74557525 ATATATATAT
**
74557535 ATATATATTTATATAAA
1 ATATATATAAATATAAA
74557552 ATATATATAAATATAAA
1 ATATATATAAATATAAA
74557569 TAATTATTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
ATATATATAAATATAAA
Found at i:74558112 original size:43 final size:43
Alignment explanation
Indices: 74558031--74558114 Score: 100
Period size: 43 Copynumber: 2.0 Consensus size: 43
74558021 AAGTCGTACA
* **
74558031 ATGCCAACGTCCCAGACATGGTCTTACATGTAGTCACATATTG
1 ATGCCAACGTCCCAGACAGGGTCTTACATGTAAACACATATTG
*
74558074 ATGCC-ACTGTCCCAGATAGGGTCTTAC-TCGTAAACACATAT
1 ATGCCAAC-GTCCCAGACAGGGTCTTACAT-GTAAACACATAT
74558115 CGGAATCACA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
42 3 0.09
43 32 0.91
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACAGGGTCTTACATGTAAACACATATTG
Found at i:74560177 original size:48 final size:48
Alignment explanation
Indices: 74560050--74560322 Score: 249
Period size: 48 Copynumber: 5.8 Consensus size: 48
74560040 TGCAAGCGAG
* * * *
74560050 GCCGATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCGTCTCA-A
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCATA
* ** * ** *
74560097 TGCCGAGGCTGTGT-CCA-ACATGGTCTTACACTGGTTCTCATATGGTG
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCATA
* * *
74560144 GCCAACGCCATGTCCCAGACATGGTCTTACACTGGCTCACA-ATCA-A
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCATA
*
74560190 CGCCGATGCCATGT-CCA-ACATGGTCTTACACTGGCTCTCATAACATA
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCATA
* * * * * *
74560237 GCCGATGTCATGTTCCAAACATGGTCTTACACTGGCATATGAAATGC--A
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGC-TCTCATAT-CATA
*
74560285 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC
74560323 ACACATCACC
Statistics
Matches: 181, Mismatches: 34, Indels: 21
0.77 0.14 0.09
Matches are distributed among these distances:
45 22 0.12
46 49 0.27
47 23 0.13
48 82 0.45
49 4 0.02
50 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.21, T:0.26
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCATA
Found at i:74560221 original size:93 final size:92
Alignment explanation
Indices: 74560056--74560322 Score: 259
Period size: 93 Copynumber: 2.8 Consensus size: 92
74560046 CGAGGCCGAT
* * * ** * **
74560056 GCCATGTCCTAGACATGGTCTTACACTAGCTCTCGTCTCAATGCCGAGGCTGTGTCCAACATGGT
1 GCCATGTCCCAGACATGGTCTTACACTGGCTCAC-AATCAA-GCCGATGCCATGTCCAACATGGT
* *** *
74560121 CTTACACTGGTTCTCATATGGTGGCCAAC
64 CTTACACTGGCTCTCATAACATAGCCAAC
74560150 GCCATGTCCCAGACATGGTCTTACACTGGCTCACAATCAACGCCGATGCCATGTCCAACATGGTC
1 GCCATGTCCCAGACATGGTCTTACACTGGCTCACAATCAA-GCCGATGCCATGTCCAACATGGTC
* *
74560215 TTACACTGGCTCTCATAACATAGCCGAT
65 TTACACTGGCTCTCATAACATAGCCAAC
* * * *
74560243 GTCATGTTCCAAACATGGTCTTACACTGGCAT-ATGAAATGC-AGCCGATGCCATGTCCCAGACA
1 GCCATGTCCCAGACATGGTCTTACACTGGC-TCA--CAAT-CAAGCCGATGCCATGT-CCA-ACA
*
74560306 TGGTCTTACACTAGCTC
60 TGGTCTTACACTGGCTC
74560323 ACACATCACC
Statistics
Matches: 146, Mismatches: 21, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
93 74 0.51
94 45 0.31
95 7 0.05
96 20 0.14
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (92 bp):
GCCATGTCCCAGACATGGTCTTACACTGGCTCACAATCAAGCCGATGCCATGTCCAACATGGTCT
TACACTGGCTCTCATAACATAGCCAAC
Found at i:74560304 original size:141 final size:142
Alignment explanation
Indices: 74560050--74560330 Score: 349
Period size: 141 Copynumber: 2.0 Consensus size: 142
74560040 TGCAAGCGAG
* **
74560050 GCCGATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCGTCTCAATGCCGAGGCTGTGTCCAA
1 GCCGATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCATAACAATGCCGAGGCTGTGTCCAA
* * * ** *
74560115 CATGGTCTTACACTGGTTCTCATATGGTGGCCAACGCCATGTCCCAGACATGGTCTTACACTGGC
66 CATGGTCTTACACTGGATATCAAATGGCAGCCAACGCCATGTCCCAGACATGGTCTTACACTAGC
74560180 TCACA-ATCAAC
131 TCACACATCAAC
* *
74560191 GCCGATGCCATGTCC-A-ACATGGTCTTACACTGGCTCTCATAAC-ATAGCCGATGTCATGT-TC
1 GCCGATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCATAACAAT-GCCGA-GGC-TGTGTC
* * *
74560252 CAAACATGGTCTTACACTGGCATATGAAAT-GCAGCCGATGCCATGTCCCAGACATGGTCTTACA
63 C-AACATGGTCTTACACTGG-ATATCAAATGGCAGCCAACGCCATGTCCCAGACATGGTCTTACA
74560316 CTAGCTCACACATCA
126 CTAGCTCACACATCA
74560331 CCCCAAATGT
Statistics
Matches: 120, Mismatches: 14, Indels: 11
0.83 0.10 0.08
Matches are distributed among these distances:
138 2 0.02
139 28 0.23
140 6 0.05
141 75 0.62
142 9 0.08
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.26
Consensus pattern (142 bp):
GCCGATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCATAACAATGCCGAGGCTGTGTCCAA
CATGGTCTTACACTGGATATCAAATGGCAGCCAACGCCATGTCCCAGACATGGTCTTACACTAGC
TCACACATCAAC
Found at i:74564116 original size:3 final size:3
Alignment explanation
Indices: 74564108--74564153 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
74564098 TTGATAAAAT
74564108 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
74564154 GTAAATATCT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:74572310 original size:17 final size:16
Alignment explanation
Indices: 74572281--74572317 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 16
74572271 TAAATGTTCT
74572281 ATATTATAAAATATAA
1 ATATTATAAAATATAA
*
74572297 ATATTTTAATAATATAA
1 ATATTATAA-AATATAA
74572314 ATAT
1 ATAT
74572318 GAGTATTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 8 0.42
17 11 0.58
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (16 bp):
ATATTATAAAATATAA
Found at i:74572570 original size:21 final size:23
Alignment explanation
Indices: 74572536--74572579 Score: 65
Period size: 21 Copynumber: 2.0 Consensus size: 23
74572526 TGATAATATG
74572536 TTTTGATATAAAAAATTAAAGTT
1 TTTTGATATAAAAAATTAAAGTT
*
74572559 TTTTGA-AT-AAAAGTTAAAGTT
1 TTTTGATATAAAAAATTAAAGTT
74572580 GAACATAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 12 0.60
22 2 0.10
23 6 0.30
ACGTcount: A:0.45, C:0.00, G:0.11, T:0.43
Consensus pattern (23 bp):
TTTTGATATAAAAAATTAAAGTT
Found at i:74574317 original size:18 final size:18
Alignment explanation
Indices: 74574294--74574330 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
74574284 AAATATATTT
*
74574294 ATAATTTGTATTTTTTAA
1 ATAATTTGTAATTTTTAA
*
74574312 ATAATTTTTAATTTTTAA
1 ATAATTTGTAATTTTTAA
74574330 A
1 A
74574331 ACTAATTTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (18 bp):
ATAATTTGTAATTTTTAA
Found at i:74578988 original size:29 final size:29
Alignment explanation
Indices: 74578913--74579001 Score: 110
Period size: 28 Copynumber: 3.1 Consensus size: 29
74578903 CATCTCATTC
* ** *
74578913 ATATGGCCCATTAGGCCCAATTCATATTC
1 ATATGGCCCATTAGGCCCAAATCACCTTT
*
74578942 ACAT-GCCCATTAGGCCCAAATCACCTTT
1 ATATGGCCCATTAGGCCCAAATCACCTTT
*
74578970 ATATGGCCCGTTAGGCCCAAATCACC-TT
1 ATATGGCCCATTAGGCCCAAATCACCTTT
74578998 ATAT
1 ATAT
74579002 TCATGCTCAC
Statistics
Matches: 52, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
28 29 0.56
29 23 0.44
ACGTcount: A:0.28, C:0.30, G:0.13, T:0.28
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACCTTT
Found at i:74583360 original size:28 final size:29
Alignment explanation
Indices: 74583280--74583394 Score: 112
Period size: 29 Copynumber: 4.1 Consensus size: 29
74583270 ACCCCTACAT
*
74583280 ACATGCATATGGCCCACTT-GGCCC--ATC
1 ACATTCATATGGCCCA-TTAGGCCCAAATC
* * * *
74583307 TCATTCATATGGCCCATCAGACCCAATTC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
74583336 ATATTCATATGG-CCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* * *
74583364 ACCTTTATATGGCCCGTTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
74583393 AC
1 AC
74583395 CTTATATTCA
Statistics
Matches: 70, Mismatches: 14, Indels: 6
0.78 0.16 0.07
Matches are distributed among these distances:
26 1 0.01
27 18 0.26
28 22 0.31
29 29 0.41
ACGTcount: A:0.27, C:0.32, G:0.15, T:0.26
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:74583399 original size:28 final size:28
Alignment explanation
Indices: 74583342--74583401 Score: 95
Period size: 29 Copynumber: 2.1 Consensus size: 28
74583332 ATTCATATTC
74583342 ATATGGCCATTAGGCCCAAATCACCTTT
1 ATATGGCCATTAGGCCCAAATCACCTTT
*
74583370 ATATGGCCCGTTAGGCCCAAATCACC-TT
1 ATATGG-CCATTAGGCCCAAATCACCTTT
74583398 ATAT
1 ATAT
74583402 TCATGCTCAC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
28 12 0.40
29 18 0.60
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.28
Consensus pattern (28 bp):
ATATGGCCATTAGGCCCAAATCACCTTT
Found at i:74589038 original size:27 final size:28
Alignment explanation
Indices: 74588994--74589101 Score: 150
Period size: 27 Copynumber: 4.0 Consensus size: 28
74588984 GGATGCCAAA
* *
74588994 ACAGATA-TTGTGACAGAGTCACCAGAT
1 ACAGATATTTGTGGCAGAGCCACCAGAT
* * *
74589021 ACAAATA-TTGTGGTAGAGCCACCAGAA
1 ACAGATATTTGTGGCAGAGCCACCAGAT
74589048 ACAGATATTTGTGGCAGAGCCACCAGAT
1 ACAGATATTTGTGGCAGAGCCACCAGAT
74589076 -CAGATATTTGTGGCAGAGCCACCAGA
1 ACAGATATTTGTGGCAGAGCCACCAGA
74589102 ATGCTTCCTC
Statistics
Matches: 72, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
27 54 0.75
28 18 0.25
ACGTcount: A:0.35, C:0.20, G:0.24, T:0.20
Consensus pattern (28 bp):
ACAGATATTTGTGGCAGAGCCACCAGAT
Found at i:74589056 original size:54 final size:55
Alignment explanation
Indices: 74588992--74589102 Score: 163
Period size: 55 Copynumber: 2.0 Consensus size: 55
74588982 ATGGATGCCA
* *
74588992 AAACAGATA-TTGTGACAGAGTCACCAGATACAAATA-TTGTGGTAGAGCCACCAG
1 AAACAGATATTTGTGACAGAGCCACCAGAT-CAAATATTTGTGGCAGAGCCACCAG
* *
74589046 AAACAGATATTTGTGGCAGAGCCACCAGATCAGATATTTGTGGCAGAGCCACCAG
1 AAACAGATATTTGTGACAGAGCCACCAGATCAAATATTTGTGGCAGAGCCACCAG
74589101 AA
1 AA
74589103 TGCTTCCTCC
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
54 14 0.27
55 37 0.73
ACGTcount: A:0.37, C:0.20, G:0.23, T:0.20
Consensus pattern (55 bp):
AAACAGATATTTGTGACAGAGCCACCAGATCAAATATTTGTGGCAGAGCCACCAG
Found at i:74598126 original size:31 final size:31
Alignment explanation
Indices: 74598075--74598142 Score: 95
Period size: 32 Copynumber: 2.2 Consensus size: 31
74598065 TTTTTTATTT
**
74598075 TTTTA-TATTTTTAAAAAATT-AAATTAAAA
1 TTTTATTATTTTTAAAAAATTAAAAGGAAAA
74598104 TTTTATTATTTTTAGAAAAATTAAAAGGAAAA
1 TTTTATTATTTTTA-AAAAATTAAAAGGAAAA
74598136 TTTTATT
1 TTTTATT
74598143 TTTATTACTT
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
29 5 0.15
30 8 0.24
31 7 0.21
32 14 0.41
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (31 bp):
TTTTATTATTTTTAAAAAATTAAAAGGAAAA
Found at i:74599731 original size:16 final size:17
Alignment explanation
Indices: 74599704--74599736 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
74599694 GCTAAGGGTA
74599704 GAAAAGATGGTTGTTGG
1 GAAAAGATGGTTGTTGG
*
74599721 GAAAA-ATGGTTTTTGG
1 GAAAAGATGGTTGTTGG
74599737 TTTTGGTGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.30, C:0.00, G:0.36, T:0.33
Consensus pattern (17 bp):
GAAAAGATGGTTGTTGG
Found at i:74601039 original size:20 final size:20
Alignment explanation
Indices: 74600961--74601040 Score: 60
Period size: 20 Copynumber: 4.0 Consensus size: 20
74600951 TTGAAATAAA
* *
74600961 GAGTGAGCTGAAAATAAGCT
1 GAGTGAGCTGGAAATGAGCT
*
74600981 CG-GTTGAGCT-CAAATGAGCT
1 -GAG-TGAGCTGGAAATGAGCT
*
74601001 GAGTTGAGCTGGACA-GAGCT
1 GAG-TGAGCTGGAAATGAGCT
74601021 CGAG-GAGCTGGAAATGAGCT
1 -GAGTGAGCTGGAAATGAGCT
74601041 AGGATCAGCT
Statistics
Matches: 49, Mismatches: 5, Indels: 11
0.75 0.08 0.17
Matches are distributed among these distances:
19 10 0.20
20 27 0.55
21 12 0.24
ACGTcount: A:0.30, C:0.15, G:0.35, T:0.20
Consensus pattern (20 bp):
GAGTGAGCTGGAAATGAGCT
Found at i:74606959 original size:12 final size:12
Alignment explanation
Indices: 74606942--74606966 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
74606932 TATGTCCGTA
74606942 TGCTAGGCCATG
1 TGCTAGGCCATG
74606954 TGCTAGGCCATG
1 TGCTAGGCCATG
74606966 T
1 T
74606967 AATTGCTTGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.24, G:0.32, T:0.28
Consensus pattern (12 bp):
TGCTAGGCCATG
Found at i:74609347 original size:29 final size:28
Alignment explanation
Indices: 74609284--74609365 Score: 85
Period size: 29 Copynumber: 2.9 Consensus size: 28
74609274 CACAAATGCG
*
74609284 CCTTTTAATATAGATAGCCACAAAAATGT
1 CCTTTTAACATAGATAGCCACAAAAA-GT
*
74609313 CCTTTTCACATAGATAGCCACAAATGAA-T
1 CCTTTTAACATAGATAGCCACAAA--AAGT
* * *
74609342 CTTTTTAATAGAGATAGCCACAAA
1 CCTTTTAACATAGATAGCCACAAA
74609366 GGCATTCCTT
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
29 43 0.96
31 2 0.04
ACGTcount: A:0.40, C:0.20, G:0.11, T:0.29
Consensus pattern (28 bp):
CCTTTTAACATAGATAGCCACAAAAAGT
Found at i:74609377 original size:29 final size:28
Alignment explanation
Indices: 74609344--74609535 Score: 95
Period size: 29 Copynumber: 6.5 Consensus size: 28
74609334 AAATGAATCT
74609344 TTTTAATAGAGATAGCCACAAAGGCATTCC
1 TTTTAATAGAGATA-CCACAAAGGC-TTCC
* *
74609374 TTTAACATTA-AGTACTTACCACAAAGGCTTTC
1 TTTTA-A-TAGAG-A--TACCACAAAGGCTTCC
* *
74609406 TCTT--TAGAGTATTGCCACAAAGGCATTCC
1 TTTTAATAGAG-A-TACCACAAAGGC-TTCC
* * *
74609435 TTTTAAAATAGATTACTACAAAGGCTT-C
1 TTTTAATAGAGA-TACCACAAAGGCTTCC
* * * *
74609463 TATTTAGTAGAGATTACAATAAAGTCTTCC
1 T-TTTAATAGAGA-TACCACAAAGGCTTCC
* * *
74609493 ATTTAATAGAGATAGCCAGAAATGCTTCC
1 TTTTAATAGAGATA-CCACAAAGGCTTCC
*
74609522 TTTTAACAGAGATA
1 TTTTAATAGAGATA
74609536 AATCTATAGG
Statistics
Matches: 125, Mismatches: 25, Indels: 25
0.71 0.14 0.14
Matches are distributed among these distances:
28 18 0.14
29 64 0.51
30 17 0.14
31 6 0.05
32 8 0.06
33 10 0.08
34 2 0.02
ACGTcount: A:0.36, C:0.18, G:0.14, T:0.32
Consensus pattern (28 bp):
TTTTAATAGAGATACCACAAAGGCTTCC
Found at i:74614653 original size:16 final size:16
Alignment explanation
Indices: 74614632--74614663 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
74614622 TTAGTTCTCT
*
74614632 CTTTAACCGATAACTA
1 CTTTAACCAATAACTA
74614648 CTTTAACCAATAACTA
1 CTTTAACCAATAACTA
74614664 TGTGTTTTCC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.41, C:0.25, G:0.03, T:0.31
Consensus pattern (16 bp):
CTTTAACCAATAACTA
Found at i:74616380 original size:46 final size:46
Alignment explanation
Indices: 74616237--74616380 Score: 129
Period size: 46 Copynumber: 3.1 Consensus size: 46
74616227 CCCGCCCATA
* *
74616237 AGTGAACTCGAACTCAACTCAACGAGCTCGGATGC-CTAGTTA-CATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCGC-A---ACCATC-CT
* * * *
74616286 -CT-AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCGCAACCATCCT
74616330 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCGCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCGCAACCATCCT
74616376 AGTGA
1 AGTGA
74616381 CATGTCACTT
Statistics
Matches: 77, Mismatches: 10, Indels: 19
0.73 0.09 0.18
Matches are distributed among these distances:
44 10 0.13
45 1 0.01
46 32 0.42
47 28 0.36
48 1 0.01
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCGCAACCATCCT
Found at i:74619254 original size:28 final size:28
Alignment explanation
Indices: 74619201--74619254 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
74619191 CGATTAGTTC
* *
74619201 TTGCAGACTCTTGCTTGAAGAGTAGTCA
1 TTGCAGACTCTTGCTTGAAAAATAGTCA
*
74619229 TTGCAGACTCTTTCTTGAAAAATAGT
1 TTGCAGACTCTTGCTTGAAAAATAGT
74619255 GTAATAACCC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35
Consensus pattern (28 bp):
TTGCAGACTCTTGCTTGAAAAATAGTCA
Found at i:74623570 original size:47 final size:47
Alignment explanation
Indices: 74623498--74623722 Score: 153
Period size: 46 Copynumber: 4.7 Consensus size: 47
74623488 TTATTTGTGT
* * **
74623498 GCTAGTGTAAAACATGTTTAAGACAT-GCATCGACCACATTTTGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCGACCACATTTTGAGA
74623544 GCTAGTGTAAGACCATGTCTGGGACATGGCATCG---ACATTGATATGAGA
1 GCTAGTGTAAGA-CATGTCTGGGACATGGCATCGACCACATT--T-TGAGA
* * **
74623592 GCTAGTGTTAGACATGTCTGGGACAT-GCATC-AGCCTCGA-GATGTA-A
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCGA-CCAC-ATTTTG-AGA
* * * * * *
74623638 GCCAATGTAAGACATGTCTAGGACATGGCATCG-GCATGAATATGTGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCGACCA--CAT-TTTGAGA
*
74623687 GCTAGTGTAAGACCATGTCTGAGACATGGCATCGAC
1 GCTAGTGTAAGA-CATGTCTGGGACATGGCATCGAC
74623723 ATTATACCCT
Statistics
Matches: 137, Mismatches: 22, Indels: 35
0.71 0.11 0.18
Matches are distributed among these distances:
45 5 0.04
46 42 0.31
47 33 0.24
48 23 0.17
49 14 0.10
50 20 0.15
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.25
Consensus pattern (47 bp):
GCTAGTGTAAGACATGTCTGGGACATGGCATCGACCACATTTTGAGA
Found at i:74623654 original size:46 final size:47
Alignment explanation
Indices: 74623539--74623724 Score: 155
Period size: 46 Copynumber: 3.9 Consensus size: 47
74623529 GACCACATTT
* * * *
74623539 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGATA
1 TGAGAGCCAATGTAAGA-CATGTCTGGGACATGGCATCGACATCGAGA
* * * *
74623587 TGAGAGCTAGTGTTAGACATGTCTGGGACAT-GCATC-AGCCTCGAGA
1 TGAGAGCCAATGTAAGACATGTCTGGGACATGGCATCGA-CATCGAGA
* * *
74623633 TGTA-AGCCAATGTAAGACATGTCTAGGACATGGCATCGGCAT-GAATA
1 TG-AGAGCCAATGTAAGACATGTCTGGGACATGGCATCGACATCG-AGA
* * *
74623680 TGTGAGAGCTAGTGTAAGACCATGTCTGAGACATGGCATCGACAT
1 --TGAGAGCCAATGTAAGA-CATGTCTGGGACATGGCATCGACAT
74623725 TATACCCTAT
Statistics
Matches: 113, Mismatches: 16, Indels: 16
0.78 0.11 0.11
Matches are distributed among these distances:
45 1 0.01
46 36 0.32
47 24 0.21
48 17 0.15
49 13 0.12
50 22 0.19
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (47 bp):
TGAGAGCCAATGTAAGACATGTCTGGGACATGGCATCGACATCGAGA
Found at i:74625975 original size:43 final size:43
Alignment explanation
Indices: 74625914--74626110 Score: 306
Period size: 43 Copynumber: 4.6 Consensus size: 43
74625904 CTGGCATTAC
*
74625914 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGACACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
74625957 GCCTGCTAGGCACGAAGG-CCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* * *
74625999 GCCTGCTAGGCACGAAGGCTCGAATACACATCACTGGCACTAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* * *
74626042 GCTTGCTAGGCATGAAGGCCCGAATACACATCACCGGCACTAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* *
74626085 GCCTACTAGGCACGAAGGCCCAAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
74626111 TAATACCAGC
Statistics
Matches: 141, Mismatches: 12, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
42 41 0.29
43 100 0.71
ACGTcount: A:0.31, C:0.32, G:0.24, T:0.13
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
Found at i:74626059 original size:85 final size:86
Alignment explanation
Indices: 74625914--74626110 Score: 306
Period size: 85 Copynumber: 2.3 Consensus size: 86
74625904 CTGGCATTAC
74625914 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGACACGAAGCCTGCTAGGCACGAAGG-CCG
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGACACGAAGCCTGCTAGGCACGAAGGCCCG
74625978 AATACACATCACCGGCACGAA
66 AATACACATCACCGGCACGAA
* * * * * *
74625999 GCCTGCTAGGCACGAAGGCTCGAATACACATCACTGGCACTAAGCTTGCTAGGCATGAAGGCCCG
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGACACGAAGCCTGCTAGGCACGAAGGCCCG
*
74626064 AATACACATCACCGGCACTAA
66 AATACACATCACCGGCACGAA
* *
74626085 GCCTACTAGGCACGAAGGCCCAAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
74626111 TAATACCAGC
Statistics
Matches: 101, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
85 55 0.54
86 46 0.46
ACGTcount: A:0.31, C:0.32, G:0.24, T:0.13
Consensus pattern (86 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGACACGAAGCCTGCTAGGCACGAAGGCCCG
AATACACATCACCGGCACGAA
Found at i:74626168 original size:38 final size:38
Alignment explanation
Indices: 74626108--74626182 Score: 105
Period size: 38 Copynumber: 2.0 Consensus size: 38
74626098 GAAGGCCCAA
* * ** *
74626108 ATATAATACCAGCACTAGGCCTGTTGGATTTATCCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
74626146 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCG
74626183 AATACACCTC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 32 1.00
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.24
Consensus pattern (38 bp):
ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
Found at i:74628937 original size:20 final size:19
Alignment explanation
Indices: 74628899--74628937 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
74628889 TTTGTTCTTC
*
74628899 TTTTCTTATTTCAATTAAT
1 TTTTCTTATTTCAAATAAT
*
74628918 TTTTTTTATTTCAAAATAAT
1 TTTTCTTATTTC-AAATAAT
74628938 GCAAATTCTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.31, C:0.08, G:0.00, T:0.62
Consensus pattern (19 bp):
TTTTCTTATTTCAAATAAT
Found at i:74632089 original size:35 final size:35
Alignment explanation
Indices: 74632050--74632116 Score: 116
Period size: 35 Copynumber: 1.9 Consensus size: 35
74632040 ATCTCATATG
*
74632050 GCCGAATATACAAATTCAATATAACCTCACATGTA
1 GCCGAATATACAAATTCAATAGAACCTCACATGTA
*
74632085 GCCGAATATACAAGTTCAATAGAACCTCACAT
1 GCCGAATATACAAATTCAATAGAACCTCACAT
74632117 ATACTTACCT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.42, C:0.24, G:0.10, T:0.24
Consensus pattern (35 bp):
GCCGAATATACAAATTCAATAGAACCTCACATGTA
Found at i:74632099 original size:70 final size:70
Alignment explanation
Indices: 74631973--74632103 Score: 163
Period size: 70 Copynumber: 1.9 Consensus size: 70
74631963 TTATATTATT
* * * * * * *
74631973 TCATATGGCCGAATATATAAGTCCAATATATCATCAAATGTAATCTAATGTTCAAGTTCAAATAA
1 TCATATGGCCGAATATACAAATCCAATATAACATCAAATGTAACCGAATATACAAGTTCAAATAA
74632038 ACATC
66 ACATC
* * * *
74632043 TCATATGGCCGAATATACAAATTCAATATAACCTCACATGTAGCCGAATATACAAGTTCAA
1 TCATATGGCCGAATATACAAATCCAATATAACATCAAATGTAACCGAATATACAAGTTCAA
74632104 TAGAACCTCA
Statistics
Matches: 50, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
70 50 1.00
ACGTcount: A:0.41, C:0.19, G:0.11, T:0.29
Consensus pattern (70 bp):
TCATATGGCCGAATATACAAATCCAATATAACATCAAATGTAACCGAATATACAAGTTCAAATAA
ACATC
Found at i:74632118 original size:70 final size:70
Alignment explanation
Indices: 74631974--74632118 Score: 157
Period size: 70 Copynumber: 2.1 Consensus size: 70
74631964 TATATTATTT
* * * * * * *
74631974 CATATGGCCGAATATATAAGTCCAATATATCATCAAATGTAATCTAATGTTCAAGTTCAAATAAA
1 CATATGGCCGAATATACAAATCCAATATAACATCAAATGTAACCGAATATACAAGTTCAAATAAA
*
74632039 CATCT
66 CATCA
* * * *
74632044 CATATGGCCGAATATACAAATTCAATATAACCTCACATGTAGCCGAATATACAAGTTC-AATAGA
1 CATATGGCCGAATATACAAATCCAATATAACATCAAATGTAACCGAATATACAAGTTCAAATA-A
*
74632108 ACCTCA
65 ACATCA
74632114 CATAT
1 CATAT
74632119 ACTTACCTAT
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
69 4 0.07
70 57 0.93
ACGTcount: A:0.41, C:0.20, G:0.10, T:0.28
Consensus pattern (70 bp):
CATATGGCCGAATATACAAATCCAATATAACATCAAATGTAACCGAATATACAAGTTCAAATAAA
CATCA
Found at i:74637618 original size:23 final size:23
Alignment explanation
Indices: 74637571--74637618 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
74637561 CTTCCTTTGC
* **
74637571 TTGCTCTTCTTCTTTCCTATGAA
1 TTGCTCTTCTTCTTTCATACCAA
*
74637594 TTGCTCTTCTTCTTTGATACCAA
1 TTGCTCTTCTTCTTTCATACCAA
74637617 TT
1 TT
74637619 CAATACCAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.15, C:0.25, G:0.08, T:0.52
Consensus pattern (23 bp):
TTGCTCTTCTTCTTTCATACCAA
Found at i:74641748 original size:40 final size:40
Alignment explanation
Indices: 74641654--74641873 Score: 202
Period size: 40 Copynumber: 5.5 Consensus size: 40
74641644 TATTCGAATG
*
74641654 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTA-GTGACT
* * * * *
74641695 ATAACCGGACTAAGATCCAAAGGCATTCGTGCAAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-TGACT
* *
74641735 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* * *
74641775 ATATCCGGGCTATG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
* * * * *
74641815 ACATCCGGGCTAAGACCCGAAGGC-CTTGTGCAAGT-AGTT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGA-CT
74641854 ATATCC-GGCTAA-ATCCGAAG
1 ATATCCGGGCTAAGATCCGAAG
74641874 ATTTCTTGAG
Statistics
Matches: 145, Mismatches: 28, Indels: 16
0.77 0.15 0.08
Matches are distributed among these distances:
37 7 0.05
38 7 0.05
39 14 0.10
40 88 0.61
41 28 0.19
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
Found at i:74644281 original size:53 final size:54
Alignment explanation
Indices: 74644212--74644418 Score: 200
Period size: 53 Copynumber: 3.8 Consensus size: 54
74644202 TTCCTTTTTA
* * * *
74644212 AACTTACCATTTCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * *
74644265 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
** * * * * * * *
74644319 TAGTTTATCAATGCCATGTCTTGACATGTTCTTACATGATTTCCTTGCCTTGTAA
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * *
74644374 AATTTACCAATACCATGCCTTGTCATGGTCTTACTTGGTATCCTT
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
74644419 AAACCCTAAT
Statistics
Matches: 122, Mismatches: 30, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
53 45 0.37
54 37 0.30
55 40 0.33
ACGTcount: A:0.21, C:0.24, G:0.16, T:0.39
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:74644367 original size:55 final size:53
Alignment explanation
Indices: 74644224--74644418 Score: 174
Period size: 55 Copynumber: 3.6 Consensus size: 53
74644214 CTTACCATTT
* *
74644224 CCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTATGAACTCACCATTG
1 CCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATG
* * * * ** * *
74644277 CCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAGTAGTTTATCAATG
1 CCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-G-AACTCACCAATG
* * * * * * * *
74644332 CCATGTCTTGACATGTTCTTACATGATTTCCTTGCCTTGTAAAATTTACCAATA
1 CCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-GAACTCACCAATG
* * *
74644386 CCATGCCTTGTCATGGTCTTACTTGGTATCCTT
1 CCATGTCTTGACATGGTCTTACATGGTATCCTT
74644419 AAACCCTAAT
Statistics
Matches: 112, Mismatches: 28, Indels: 3
0.78 0.20 0.02
Matches are distributed among these distances:
53 35 0.31
54 37 0.33
55 40 0.36
ACGTcount: A:0.20, C:0.24, G:0.17, T:0.39
Consensus pattern (53 bp):
CCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATG
Found at i:74645213 original size:31 final size:31
Alignment explanation
Indices: 74645170--74645253 Score: 143
Period size: 31 Copynumber: 2.7 Consensus size: 31
74645160 TTAGTCTTGA
74645170 CATAT-ACTGGGCCGAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTCCATAAAT
*
74645200 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTCCATAAAT
*
74645231 CATATCACTGGGCTGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
74645254 ACTGTAAACG
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
30 5 0.10
31 46 0.90
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTCCATAAAT
Found at i:74645324 original size:42 final size:42
Alignment explanation
Indices: 74645277--74645410 Score: 243
Period size: 42 Copynumber: 3.2 Consensus size: 42
74645267 TGGCCCTTAG
74645277 GCCCATTTCAATATCACATGTAATGTCAAT-AGATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGA-ATGTATGCAA
*
74645319 GCCCATTTCAATATCACATGTAATGCCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
74645361 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
74645403 GCCCATTT
1 GCCCATTT
74645411 GGGGAGACTA
Statistics
Matches: 89, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
42 88 0.99
43 1 0.01
ACGTcount: A:0.34, C:0.21, G:0.14, T:0.31
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
Found at i:74645574 original size:25 final size:25
Alignment explanation
Indices: 74645545--74645627 Score: 73
Period size: 25 Copynumber: 3.4 Consensus size: 25
74645535 CTGGAGGCCT
74645545 AGCCTCTTTTAAT-AACTGGGGCAA
1 AGCCTCTTTTAATAAACTGGGGCAA
* *
74645569 AGGCCT-TTCTGATAAACTGGGGCAA
1 A-GCCTCTTTTAATAAACTGGGGCAA
** *
74645594 AGCC-CTTTTCGGTAAACTGGGGCAG
1 AGCCTCTTTT-AATAAACTGGGGCAA
*
74645619 AGCCCCTTT
1 AGCCTCTTT
74645628 ATCACTTCCT
Statistics
Matches: 49, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
24 12 0.24
25 33 0.67
26 4 0.08
ACGTcount: A:0.24, C:0.24, G:0.25, T:0.27
Consensus pattern (25 bp):
AGCCTCTTTTAATAAACTGGGGCAA
Found at i:74647829 original size:80 final size:81
Alignment explanation
Indices: 74647708--74647897 Score: 240
Period size: 80 Copynumber: 2.4 Consensus size: 81
74647698 GCTACTCGTT
* * * *
74647708 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTTGGGA-CTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCC-TTCGGATCTTAACCCG
74647772 GATATAGTCAC-TAGCA
65 GATATAGTCACTTAGCA
* * * ** *
74647788 TAAATGCCTTCGGGACTTATCCCGGATATAGTTACTAGCACAAATGCCTTCGGATCTTAGTCTGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGATCTTAACCCGG
* *
74647853 ATGTAGTCGCTTAGCA
66 ATATAGTCACTTAGCA
*
74647869 CAAAAGCCTTCGGGACTTAGCCCGGATAT
1 CAAATGCCTTCGGGACTTAGCCCGGATAT
74647898 CATTCGAGTA
Statistics
Matches: 93, Mismatches: 15, Indels: 3
0.84 0.14 0.03
Matches are distributed among these distances:
79 5 0.05
80 57 0.61
81 31 0.33
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.26
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTCACTTAGCA
Found at i:74647888 original size:41 final size:40
Alignment explanation
Indices: 74647708--74647897 Score: 204
Period size: 40 Copynumber: 4.7 Consensus size: 40
74647698 GCTACTCGTT
* * * * *
74647708 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGTCCGGATATAGTCACTAGCA
* **
74647748 CAAATGCCTTTGGGACTTAACCCGGATATAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGTCCGGATATAGTCACTAGCA
* *
74647788 TAAATGCCTTCGGGACTTA-TCCCGGATATAGTTACTAGCA
1 CAAATGCCTTCGGGACTTAGT-CCGGATATAGTCACTAGCA
* * *
74647828 CAAATGCCTTC-GGATCTTAGTCTGGATGTAGTCGCTTAGCA
1 CAAATGCCTTCGGGA-CTTAGTCCGGATATAGTCAC-TAGCA
* *
74647869 CAAAAGCCTTCGGGACTTAGCCCGGATAT
1 CAAATGCCTTCGGGACTTAGTCCGGATAT
74647898 CATTCGAGTA
Statistics
Matches: 126, Mismatches: 19, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
39 3 0.02
40 93 0.74
41 27 0.21
42 3 0.02
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGTCCGGATATAGTCACTAGCA
Found at i:74649832 original size:27 final size:27
Alignment explanation
Indices: 74649802--74649853 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
74649792 GTAAATCTAC
74649802 AAACCAAGGGTATTTC-AGTAATTTTGT
1 AAACCAAGGGTATTTCTA-TAATTTTGT
*
74649829 AAACCAATGGTATTTCTATAATTTT
1 AAACCAAGGGTATTTCTATAATTTT
74649854 TAGAAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.35, C:0.12, G:0.13, T:0.40
Consensus pattern (27 bp):
AAACCAAGGGTATTTCTATAATTTTGT
Found at i:74649907 original size:27 final size:27
Alignment explanation
Indices: 74649851--74649987 Score: 107
Period size: 27 Copynumber: 5.0 Consensus size: 27
74649841 TTTCTATAAT
* * * *
74649851 TTTTAGAAAGTCAAGGGTATTTTTGCAA
1 TTTTACAAA-TCAGGGGTATTTTGGTAA
*
74649879 TTTTATAAATCAGGGGTATTTTGGTAA
1 TTTTACAAATCAGGGGTATTTTGGTAA
* * **
74649906 TTTTACACAT-TGAGGGTATTTCAGTAA
1 TTTTACAAATCAG-GGGTATTTTGGTAA
* * * * *
74649933 TTTCAAAAACCAGTGGTATTTCGGTAA
1 TTTTACAAATCAGGGGTATTTTGGTAA
74649960 TTTTACAAA-CTAGGGGTATTTTGGTAA
1 TTTTACAAATC-AGGGGTATTTTGGTAA
74649987 T
1 T
74649988 GCTATCCTAC
Statistics
Matches: 86, Mismatches: 20, Indels: 7
0.76 0.18 0.06
Matches are distributed among these distances:
26 2 0.02
27 75 0.87
28 9 0.10
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
TTTTACAAATCAGGGGTATTTTGGTAA
Found at i:74649977 original size:54 final size:54
Alignment explanation
Indices: 74649799--74649980 Score: 175
Period size: 54 Copynumber: 3.3 Consensus size: 54
74649789 TTGGTAAATC
* * * **
74649799 TACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAATGGTATTTCTATAATTTT
1 TACAAACTAAGGGTATTTCAGTAATTTTATAAACCAGTGGTATTTCGGTAA-TTT
* * ** * * * *
74649854 TAGAAAGTCAAGGGTATTTTTGCAATTTTATAAATCAGGGGTATTTTGGTAATTT
1 TACAAACT-AAGGGTATTTCAGTAATTTTATAAACCAGTGGTATTTCGGTAATTT
* * * * *
74649909 TACACATTGAGGGTATTTCAGTAATTTCAAAAACCAGTGGTATTTCGGTAATTT
1 TACAAACTAAGGGTATTTCAGTAATTTTATAAACCAGTGGTATTTCGGTAATTT
*
74649963 TACAAACTAGGGGTATTT
1 TACAAACTAAGGGTATTT
74649981 TGGTAATGCT
Statistics
Matches: 97, Mismatches: 29, Indels: 3
0.75 0.22 0.02
Matches are distributed among these distances:
54 51 0.53
55 13 0.13
56 33 0.34
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.39
Consensus pattern (54 bp):
TACAAACTAAGGGTATTTCAGTAATTTTATAAACCAGTGGTATTTCGGTAATTT
Found at i:74650028 original size:27 final size:27
Alignment explanation
Indices: 74649919--74650028 Score: 73
Period size: 27 Copynumber: 4.1 Consensus size: 27
74649909 TACACATTGA
* *
74649919 GGGTATTTCAGTAATTTCAAAAACCAG
1 GGGTATTTCAGTAATTTCATAAACAAG
* * * * *
74649946 TGGTATTTCGGTAATTTTACAAACTAG
1 GGGTATTTCAGTAATTTCATAAACAAG
** *
74649973 GGGTATTTTGGTAATGCTATCCT--AC-AG
1 GGGTATTTCAGTAAT--T-TCATAAACAAG
*
74650000 GGGTATTTCAGTAATTTCATAATCAAG
1 GGGTATTTCAGTAATTTCATAAACAAG
74650027 GG
1 GG
74650029 TAAAACGGTA
Statistics
Matches: 63, Mismatches: 14, Indels: 12
0.71 0.16 0.13
Matches are distributed among these distances:
24 3 0.05
25 1 0.02
26 1 0.02
27 54 0.86
28 2 0.03
29 1 0.02
30 1 0.02
ACGTcount: A:0.30, C:0.13, G:0.22, T:0.35
Consensus pattern (27 bp):
GGGTATTTCAGTAATTTCATAAACAAG
Found at i:74650058 original size:27 final size:27
Alignment explanation
Indices: 74650020--74650111 Score: 114
Period size: 27 Copynumber: 3.4 Consensus size: 27
74650010 GTAATTTCAT
74650020 AATCAAGGGTAAAACGGTAATTTTGTA
1 AATCAAGGGTAAAACGGTAATTTTGTA
* *
74650047 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-AAGGGTAAAACGGTAATTTTGTA
* * *
74650074 AATCAAGGGTAAAACGATAATTCTATA
1 AATCAAGGGTAAAACGGTAATTTTGTA
*
74650101 AATCGAGGGTA
1 AATCAAGGGTA
74650112 CTTTGGTAAT
Statistics
Matches: 55, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
26 1 0.02
27 53 0.96
28 1 0.02
ACGTcount: A:0.41, C:0.08, G:0.23, T:0.28
Consensus pattern (27 bp):
AATCAAGGGTAAAACGGTAATTTTGTA
Found at i:74652426 original size:31 final size:31
Alignment explanation
Indices: 74652383--74652559 Score: 266
Period size: 31 Copynumber: 5.7 Consensus size: 31
74652373 TTAGTCTTGA
* *
74652383 CATAT-ACTGGGCCAAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
74652413 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
* * *
74652444 CATATCATTAGGCCGAAGCCTTTTCATTAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
74652475 CATATCACTGGGCTGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
74652506 CATATCATTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
* *
74652537 CATATCTCTGGGCTGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
74652560 ACTGTAAACG
Statistics
Matches: 132, Mismatches: 14, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
30 5 0.04
31 127 0.96
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:74652630 original size:42 final size:42
Alignment explanation
Indices: 74652583--74652716 Score: 252
Period size: 42 Copynumber: 3.2 Consensus size: 42
74652573 TGGCCCTTAG
74652583 GCCCATTTCAATATCACATGTAATGTCAAT-AGATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGA-ATGTATGCAA
74652625 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
74652667 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
74652709 GCCCATTT
1 GCCCATTT
74652717 GGGGAGACTA
Statistics
Matches: 91, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
42 90 0.99
43 1 0.01
ACGTcount: A:0.34, C:0.20, G:0.14, T:0.31
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
Found at i:74653777 original size:27 final size:27
Alignment explanation
Indices: 74653715--74653779 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
74653705 AGGCATATTC
74653715 GTCATTTTACCATACAAGGGTATTACG
1 GTCATTTTACCATACAAGGGTATTACG
* * *
74653742 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAAGGG-TATTACG
*
74653769 GTCTTTTTACC
1 GTCATTTTACC
74653780 TATTAGGCGT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGTATTACG
Found at i:74653853 original size:27 final size:27
Alignment explanation
Indices: 74653823--74653875 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
74653813 AGGTGTTTTG
74653823 GTAAATCTATAAACCAAGGGTATTTCA
1 GTAAATCTATAAACCAAGGGTATTTCA
* * * *
74653850 GTAATTTTGTAAACCAATGGTATTTC
1 GTAAATCTATAAACCAAGGGTATTTC
74653876 TATAATTTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.36
Consensus pattern (27 bp):
GTAAATCTATAAACCAAGGGTATTTCA
Found at i:74653903 original size:29 final size:28
Alignment explanation
Indices: 74653833--74653913 Score: 94
Period size: 29 Copynumber: 2.9 Consensus size: 28
74653823 GTAAATCTAT
*
74653833 AAACCAAGGGTATTTC-AGTAA-TTTTGT
1 AAACCAAGGGTATTTCTA-TAATTTTTGA
*
74653860 AAACCAATGGTATTTCTATAATTTTTAGA
1 AAACCAAGGGTATTTCTATAATTTTT-GA
* *
74653889 AAATCAAGGGTATTTCTCTAATTTT
1 AAACCAAGGGTATTTCTATAATTTT
74653914 GTAAATTAGG
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
27 18 0.39
28 5 0.11
29 23 0.50
ACGTcount: A:0.35, C:0.11, G:0.14, T:0.41
Consensus pattern (28 bp):
AAACCAAGGGTATTTCTATAATTTTTGA
Found at i:74653962 original size:27 final size:27
Alignment explanation
Indices: 74653833--74654022 Score: 148
Period size: 27 Copynumber: 7.0 Consensus size: 27
74653823 GTAAATCTAT
* * **
74653833 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACTAAGGGTATTTCGGTAATTTTAC
* * ** *
74653860 AAACCAATGGTATTTCTATAATTTTTAG
1 AAACTAAGGGTATTTCGGTAA-TTTTAC
* ** **
74653888 AAAATCAAGGGTATTTCTCTAATTTTGT
1 AAACT-AAGGGTATTTCGGTAATTTTAC
* * *
74653916 AAATTAGGGGTATTTTGGTAATTTTAC
1 AAACTAAGGGTATTTCGGTAATTTTAC
*
74653943 AAACTAAGGGTATTTCGGTAATTTCAC
1 AAACTAAGGGTATTTCGGTAATTTTAC
* *
74653970 AAAC-CAGTGGTATTTCAGTAATTTTAC
1 AAACTAAG-GGTATTTCGGTAATTTTAC
* *
74653997 AAACTAGGGGTATTTTGGTAATTTTA
1 AAACTAAGGGTATTTCGGTAATTTTA
74654023 TCCTACAGGG
Statistics
Matches: 130, Mismatches: 29, Indels: 8
0.78 0.17 0.05
Matches are distributed among these distances:
26 2 0.02
27 98 0.75
28 16 0.12
29 14 0.11
ACGTcount: A:0.33, C:0.10, G:0.17, T:0.40
Consensus pattern (27 bp):
AAACTAAGGGTATTTCGGTAATTTTAC
Found at i:74654013 original size:81 final size:81
Alignment explanation
Indices: 74653897--74654048 Score: 207
Period size: 81 Copynumber: 1.9 Consensus size: 81
74653887 GAAAATCAAG
* ** * *
74653897 GGTATTTCTCTAATTTTGTAAATTAGGGGTATTTTGGTAATTTTA-CAAACTAAGGGTATTTCGG
1 GGTATTTCACTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATCAAAC-AAGGGTATTTCAG
74653961 TAATTTCACAAACCAGT
65 TAATTTCACAAACCAGT
* ** *
74653978 GGTATTTCAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATCCTACAGGGGTATTTCAGT
1 GGTATTTCACTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATCAAACAAGGGTATTTCAGT
74654043 AATTTC
66 AATTTC
74654049 GCAATCGAGG
Statistics
Matches: 61, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
81 58 0.95
82 3 0.05
ACGTcount: A:0.28, C:0.11, G:0.19, T:0.41
Consensus pattern (81 bp):
GGTATTTCACTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATCAAACAAGGGTATTTCAGT
AATTTCACAAACCAGT
Found at i:74654032 original size:27 final size:27
Alignment explanation
Indices: 74653896--74654047 Score: 153
Period size: 27 Copynumber: 5.6 Consensus size: 27
74653886 AGAAAATCAA
** ** *
74653896 GGGTATTTCTCTAATTTTGTAAATTAG
1 GGGTATTTCGGTAATTTTACAAACTAG
* *
74653923 GGGTATTTTGGTAATTTTACAAACTAA
1 GGGTATTTCGGTAATTTTACAAACTAG
* *
74653950 GGGTATTTCGGTAATTTCACAAACCAG
1 GGGTATTTCGGTAATTTTACAAACTAG
* *
74653977 TGGTATTTCAGTAATTTTACAAACTAG
1 GGGTATTTCGGTAATTTTACAAACTAG
* **
74654004 GGGTATTTTGGTAATTTTATCCTAC-AG
1 GGGTATTTCGGTAATTTTA-CAAACTAG
*
74654031 GGGTATTTCAGTAATTT
1 GGGTATTTCGGTAATTT
74654048 CGCAATCGAG
Statistics
Matches: 102, Mismatches: 22, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
27 99 0.97
28 3 0.03
ACGTcount: A:0.28, C:0.11, G:0.20, T:0.41
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTTACAAACTAG
Found at i:74654085 original size:27 final size:27
Alignment explanation
Indices: 74654051--74654142 Score: 121
Period size: 27 Copynumber: 3.4 Consensus size: 27
74654041 GTAATTTCGC
74654051 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
* *
74654078 AATTGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
* * * * *
74654105 AATCAAGGGTAAAACGATTATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTGTA
74654132 AATCGAGGGTA
1 AATCGAGGGTA
74654143 CTTTGGTAAT
Statistics
Matches: 55, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 55 1.00
ACGTcount: A:0.39, C:0.07, G:0.24, T:0.30
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTTTGTA
Found at i:74657827 original size:46 final size:47
Alignment explanation
Indices: 74657681--74657938 Score: 189
Period size: 46 Copynumber: 5.5 Consensus size: 47
74657671 TTGTACGCTT
*
74657681 GTGTAAGA-CATGTCTGGGACATGCATCGGCCACATT-ATGA-G-AA-TCA
1 GTGTAAGACCATGTCTGGGACATGCATCGG-C-C-TTGA-GATGTAAGCCA
* * * * * *
74657727 GTGTAAGACCATGTCTAGGACATGACATCGTCATTGATACG-AGAGCAA
1 GTGTAAGACCATGTCTGGGACATG-CATCGGCCTTGAGATGTA-AGCCA
74657775 GTGTAAGA-CATGTCTGGGACATGCATCGGCCTTGAGATGTAAGCCA
1 GTGTAAGACCATGTCTGGGACATGCATCGGCCTTGAGATGTAAGCCA
* * * *
74657821 GTGTAAGA-CATGTCTGGGACATGCTTTGG-CTACGAGATGT--GTCA
1 GTGTAAGACCATGTCTGGGACATGCATCGGCCT-TGAGATGTAAGCCA
* * * *
74657865 GTGTAAGACCATGTATGGGACATTGCATCGG-CATGAATATGTGAGAGCTA
1 GTGTAAGACCATGTCTGGGACA-TGCATCGGCCTTG-AGATGT-A-AGCCA
*
74657915 GTGTAATACCATGTCTGGGACATG
1 GTGTAAGACCATGTCTGGGACATG
74657939 GGATCGGCAT
Statistics
Matches: 171, Mismatches: 26, Indels: 27
0.76 0.12 0.12
Matches are distributed among these distances:
44 11 0.06
45 18 0.11
46 73 0.43
47 31 0.18
48 14 0.08
49 2 0.01
50 22 0.13
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.26
Consensus pattern (47 bp):
GTGTAAGACCATGTCTGGGACATGCATCGGCCTTGAGATGTAAGCCA
Found at i:74659894 original size:22 final size:22
Alignment explanation
Indices: 74659859--74659906 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 22
74659849 GTGCCAAGGG
* *
74659859 CACACGGGCGTGTCTCTATGTC
1 CACACGAGCATGTCTCTATGTC
74659881 CACACGAGCATGTCTCTATGTC
1 CACACGAGCATGTCTCTATGTC
74659903 CACA
1 CACA
74659907 TGGGCGTGTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.21, C:0.33, G:0.21, T:0.25
Consensus pattern (22 bp):
CACACGAGCATGTCTCTATGTC
Found at i:74665069 original size:22 final size:22
Alignment explanation
Indices: 74665044--74665085 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
74665034 ACAAAATTTT
*
74665044 CATTTAATCACACTTTTACACA
1 CATTTAATAACACTTTTACACA
* *
74665066 CATTTTATAACCCTTTTACA
1 CATTTAATAACACTTTTACA
74665086 AATTGGTCCT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.33, C:0.26, G:0.00, T:0.40
Consensus pattern (22 bp):
CATTTAATAACACTTTTACACA
Found at i:74666854 original size:23 final size:23
Alignment explanation
Indices: 74666828--74666871 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
74666818 TGCAAAAATA
* *
74666828 ATTAAATGTTAAATTTCATGTCT
1 ATTAAATGTGAAATTACATGTCT
*
74666851 ATTATATGTGAAATTACATGT
1 ATTAAATGTGAAATTACATGT
74666872 GTGAAATTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.36, C:0.07, G:0.11, T:0.45
Consensus pattern (23 bp):
ATTAAATGTGAAATTACATGTCT
Found at i:74673478 original size:16 final size:16
Alignment explanation
Indices: 74673457--74673518 Score: 88
Period size: 16 Copynumber: 3.9 Consensus size: 16
74673447 TTTGGTTCAA
*
74673457 TGTAATGGAATAGGGT
1 TGTAATGGAATAGAGT
**
74673473 TGTAATGGAATAGAAC
1 TGTAATGGAATAGAGT
74673489 TGTAATGGAATAGAGT
1 TGTAATGGAATAGAGT
*
74673505 TGTAATGAAATAGA
1 TGTAATGGAATAGA
74673519 ACTGTAATAG
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 40 1.00
ACGTcount: A:0.40, C:0.02, G:0.29, T:0.29
Consensus pattern (16 bp):
TGTAATGGAATAGAGT
Found at i:74673498 original size:32 final size:32
Alignment explanation
Indices: 74673457--74673526 Score: 122
Period size: 32 Copynumber: 2.2 Consensus size: 32
74673447 TTTGGTTCAA
* *
74673457 TGTAATGGAATAGGGTTGTAATGGAATAGAAC
1 TGTAATGGAATAGAGTTGTAATGAAATAGAAC
74673489 TGTAATGGAATAGAGTTGTAATGAAATAGAAC
1 TGTAATGGAATAGAGTTGTAATGAAATAGAAC
74673521 TGTAAT
1 TGTAAT
74673527 AGCAATTCAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.40, C:0.03, G:0.27, T:0.30
Consensus pattern (32 bp):
TGTAATGGAATAGAGTTGTAATGAAATAGAAC
Found at i:74673524 original size:16 final size:16
Alignment explanation
Indices: 74673457--74673526 Score: 86
Period size: 16 Copynumber: 4.4 Consensus size: 16
74673447 TTTGGTTCAA
***
74673457 TGTAATGGAATAGGGT
1 TGTAATGGAATAGAAC
74673473 TGTAATGGAATAGAAC
1 TGTAATGGAATAGAAC
**
74673489 TGTAATGGAATAGAGT
1 TGTAATGGAATAGAAC
*
74673505 TGTAATGAAATAGAAC
1 TGTAATGGAATAGAAC
74673521 TGTAAT
1 TGTAAT
74673527 AGCAATTCAA
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 46 1.00
ACGTcount: A:0.40, C:0.03, G:0.27, T:0.30
Consensus pattern (16 bp):
TGTAATGGAATAGAAC
Found at i:74673596 original size:44 final size:44
Alignment explanation
Indices: 74673508--74673599 Score: 125
Period size: 44 Copynumber: 2.1 Consensus size: 44
74673498 ATAGAGTTGT
74673508 AATGAAATAGAACTGTAATAGCAATTCAATTGTTTGGTTGAATGG
1 AATGAAATAGAACTGTAATA-CAATTCAATTGTTTGGTTGAATGG
* *
74673553 AATGGAATAGAACTGTAATA-ATATTC-TTGTGTTTGGTTGAATGG
1 AATGAAATAGAACTGTAATACA-ATTCAAT-TGTTTGGTTGAATGG
74673597 AAT
1 AAT
74673600 AGAGTTGTAA
Statistics
Matches: 43, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
43 2 0.05
44 22 0.51
45 19 0.44
ACGTcount: A:0.36, C:0.05, G:0.23, T:0.36
Consensus pattern (44 bp):
AATGAAATAGAACTGTAATACAATTCAATTGTTTGGTTGAATGG
Found at i:74673795 original size:21 final size:20
Alignment explanation
Indices: 74673767--74673806 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
74673757 AATTTATTAT
74673767 TAATTATAATTTAACAATAA
1 TAATTATAATTTAACAATAA
*
74673787 TAATATATAATTTAATAATA
1 TAAT-TATAATTTAACAATA
74673807 TTCTTAATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (20 bp):
TAATTATAATTTAACAATAA
Found at i:74673853 original size:19 final size:21
Alignment explanation
Indices: 74673829--74673874 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
74673819 CAATTATTAA
*
74673829 AATATA-AAT-TAATAAAAAT
1 AATATATAATATAACAAAAAT
*
74673848 AATATATAATATTACAAAAAT
1 AATATATAATATAACAAAAAT
74673869 AATATA
1 AATATA
74673875 CAACCTACTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 6 0.26
20 3 0.13
21 14 0.61
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (21 bp):
AATATATAATATAACAAAAAT
Found at i:74674008 original size:12 final size:12
Alignment explanation
Indices: 74673978--74674012 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
74673968 CCTATGTTAC
74673978 TTAAAGAATAAT
1 TTAAAGAATAAT
*
74673990 TTAAAAGAGTAAT
1 TT-AAAGAATAAT
74674003 TTAAAGAATA
1 TTAAAGAATA
74674013 TCTGGTCTCG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
12 9 0.45
13 11 0.55
ACGTcount: A:0.57, C:0.00, G:0.11, T:0.31
Consensus pattern (12 bp):
TTAAAGAATAAT
Found at i:74681910 original size:42 final size:42
Alignment explanation
Indices: 74681793--74681946 Score: 179
Period size: 42 Copynumber: 3.7 Consensus size: 42
74681783 TACCATACCA
* * *
74681793 ATGCCATATCCCAGATATGGTCTT--ACATAATCTCGTATCG
1 ATGCCATATACCAGATATGGTCTTACACAAAATCTCATATCG
* *
74681833 ATGCCA-ATAGCCCAGCTATGGTCTTACACGAAATCTCATATCG
1 ATGCCATATA--CCAGATATGGTCTTACACAAAATCTCATATCG
* * *
74681876 ATGCCACATACCAGATGTGGTCTTACACAAAATCTCATATTG
1 ATGCCATATACCAGATATGGTCTTACACAAAATCTCATATCG
* *
74681918 ATGCCATATCCCAAATATGGTCTTACACA
1 ATGCCATATACCAGATATGGTCTTACACA
74681947 TAAACTTAGT
Statistics
Matches: 96, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
39 2 0.02
40 6 0.06
41 13 0.14
42 53 0.55
43 19 0.20
44 3 0.03
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (42 bp):
ATGCCATATACCAGATATGGTCTTACACAAAATCTCATATCG
Found at i:74686539 original size:48 final size:48
Alignment explanation
Indices: 74686463--74686643 Score: 184
Period size: 48 Copynumber: 3.8 Consensus size: 48
74686453 CACCACGATT
* **
74686463 TATGAGAGCCAGTGTAAGACCATATCTGGGACATGGCATCGGTGTTGA
1 TATGTGAGCCAGTGTAAGACCATATCTGGGACATGGCATCGGCATTGA
* *
74686511 TATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGA
1 TATGTGAGCCAGTGTAAGACCATATCTGGGACATGGCATCGGCATTGA
* * ** * * * * * *
74686559 TACGTGTGCTTGTGTGAGACCATATCTAGGATATGGCATCGGCCTCGG
1 TATGTGAGCCAGTGTAAGACCATATCTGGGACATGGCATCGGCATTGA
** *
74686607 TATGTGATTTCA-TGTAAGACCATATCTGGGATATGGC
1 TATGTGA-GCCAGTGTAAGACCATATCTGGGACATGGC
74686644 GTTGATATGA
Statistics
Matches: 107, Mismatches: 25, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
48 107 1.00
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.28
Consensus pattern (48 bp):
TATGTGAGCCAGTGTAAGACCATATCTGGGACATGGCATCGGCATTGA
Found at i:74686679 original size:42 final size:42
Alignment explanation
Indices: 74686607--74686784 Score: 140
Period size: 42 Copynumber: 4.1 Consensus size: 42
74686597 TCGGCCTCGG
* * * * *
74686607 TATGTGATTTCATGTAAGACCATATCTGGGATATGGCGTTGA
1 TATGAGATTTCGTGTAAGACCATGTCTGGGATATGGCATCGA
* * * *
74686649 TATGATATTTCGTGCAAGACCATGTTTGGGACATGGCATCGA
1 TATGAGATTTCGTGTAAGACCATGTCTGGGATATGGCATCGA
* ** *
74686691 TATGAGGTCCCGTATAAGACCATGTCTGGGATATGGCATCGGTA
1 TATGAGATTTCGTGTAAGACCATGTCTGGGATATGGCATC-G-A
* * * * *
74686735 TCGACATTAGACTTCGTATAAGACCATATTTGGGATATGGCATCGA
1 T----ATGAGATTTCGTGTAAGACCATGTCTGGGATATGGCATCGA
74686781 TATG
1 TATG
74686785 TAGACCCATG
Statistics
Matches: 105, Mismatches: 25, Indels: 12
0.74 0.18 0.08
Matches are distributed among these distances:
42 67 0.64
43 1 0.01
44 2 0.02
46 2 0.02
47 1 0.01
48 32 0.30
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (42 bp):
TATGAGATTTCGTGTAAGACCATGTCTGGGATATGGCATCGA
Found at i:74689043 original size:41 final size:40
Alignment explanation
Indices: 74688990--74689159 Score: 161
Period size: 41 Copynumber: 4.2 Consensus size: 40
74688980 AGTCCGACTC
*
74688990 TTAG-CACCGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
* * *
74689029 TTAGACTACTGGCTCGAAGGCCCTTCG-GAACTAAG-TCCGG-
1 TTAGAC-ACTGGCTCAAAAGCCCTTCGAG-ACCAAGCT-CGGA
* * *
74689069 TTATGACACTGGCTCTAAAAAGCCCTTCGAAACTAAGTTCGGTTA
1 TTA-GACACTGGCTC--AAAAGCCCTTCGAGACCAAGCTCGG--A
74689114 TTAG-CACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
74689153 TTTAGAC
1 -TTAGAC
74689160 CCCGATTAGC
Statistics
Matches: 107, Mismatches: 10, Indels: 26
0.75 0.07 0.18
Matches are distributed among these distances:
39 5 0.05
40 18 0.17
41 51 0.48
42 19 0.18
43 10 0.09
44 1 0.01
45 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (40 bp):
TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
Found at i:74697391 original size:41 final size:40
Alignment explanation
Indices: 74697338--74697507 Score: 161
Period size: 41 Copynumber: 4.2 Consensus size: 40
74697328 AGTCCGACTC
*
74697338 TTAG-CACCGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
* * *
74697377 TTAGACTACTGGCTCGAAGGCCCTTCG-GAACTAAG-TCCGG-
1 TTAGAC-ACTGGCTCAAAAGCCCTTCGAG-ACCAAGCT-CGGA
* * *
74697417 TTATGACACTGGCTCTAAAAAGCCCTTCGAAACTAAGTTCGGTTA
1 TTA-GACACTGGCTC--AAAAGCCCTTCGAGACCAAGCTCGG--A
74697462 TTAG-CACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
74697501 TTTAGAC
1 -TTAGAC
74697508 CCCGATTAGC
Statistics
Matches: 107, Mismatches: 10, Indels: 26
0.75 0.07 0.18
Matches are distributed among these distances:
39 5 0.05
40 18 0.17
41 51 0.48
42 19 0.18
43 10 0.09
44 1 0.01
45 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (40 bp):
TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
Found at i:74709466 original size:27 final size:27
Alignment explanation
Indices: 74709135--74709464 Score: 337
Period size: 27 Copynumber: 12.3 Consensus size: 27
74709125 GTTGTGCAAG
* * *
74709135 AAAATGATC-AAATACCCCCATAGGCT
1 AAAATGACCGAAATACCCCTATAGGGT
* *
74709161 AAAATGACCGAAATACCCCCATTGGGT
1 AAAATGACCGAAATACCCCTATAGGGT
* *
74709188 -AAATGACTGAAATACCCCCTGTAGGGT
1 AAAATGACCGAAATA-CCCCTATAGGGT
74709215 AAAATGACCGAAATA-CCCTCATAGGGT
1 AAAATGACCGAAATACCCCT-ATAGGGT
* *
74709242 AAAATGACCGAAATA-CCTTCATAAGGT
1 AAAATGACCGAAATACCCCT-ATAGGGT
*
74709269 AAAATGACCAAAATACCCCTATAGGGT
1 AAAATGACCGAAATACCCCTATAGGGT
* *
74709296 -AAATGACCAAAATAACCCTATAGGGT
1 AAAATGACCGAAATACCCCTATAGGGT
* *
74709322 AAAATGATCGAAATACCCCAATAGGGT
1 AAAATGACCGAAATACCCCTATAGGGT
*
74709349 AAAATGACCGAAATACCCCTCTAGGGT
1 AAAATGACCGAAATACCCCTATAGGGT
* * *
74709376 AAAATGACCAAAATACCCCTGTAGGAT
1 AAAATGACCGAAATACCCCTATAGGGT
* * * * **
74709403 ATAATGACTGTAATACCCCTCTAATGT
1 AAAATGACCGAAATACCCCTATAGGGT
* * * * *
74709430 AAAATGACTGTAATACCCTTGTAAGGT
1 AAAATGACCGAAATACCCCTATAGGGT
74709457 AAAATGAC
1 AAAATGAC
74709465 TGATTTGCCC
Statistics
Matches: 261, Mismatches: 37, Indels: 11
0.84 0.12 0.04
Matches are distributed among these distances:
26 50 0.19
27 195 0.75
28 16 0.06
ACGTcount: A:0.41, C:0.22, G:0.16, T:0.21
Consensus pattern (27 bp):
AAAATGACCGAAATACCCCTATAGGGT
Found at i:74726117 original size:20 final size:20
Alignment explanation
Indices: 74726065--74726111 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
74726055 TGTATGAGGT
* * *
74726065 TGCACTTCAGTGCCTTTGTA
1 TGCATTTCAATGCCTCTGTA
*
74726085 TGCATTTCAATGCCTCTGTT
1 TGCATTTCAATGCCTCTGTA
74726105 TGCATTT
1 TGCATTT
74726112 TGATGCTCTC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.15, C:0.23, G:0.17, T:0.45
Consensus pattern (20 bp):
TGCATTTCAATGCCTCTGTA
Found at i:74727826 original size:27 final size:28
Alignment explanation
Indices: 74727771--74727851 Score: 94
Period size: 28 Copynumber: 2.9 Consensus size: 28
74727761 GAATAGTCTT
* * *
74727771 TGCAGACTCTTTCTTGAAAGATAGCCCA
1 TGCAGACTATTGCTTGAAAGATAGTCCA
*
74727799 TGCAGACTATTGCTTCAAA-ATAGTCCA
1 TGCAGACTATTGCTTGAAAGATAGTCCA
*
74727826 TACAGA-TACTTGCTTGAAAGATAGTC
1 TGCAGACTA-TTGCTTGAAAGATAGTC
74727852 GGTAAGGACT
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
26 2 0.04
27 21 0.47
28 22 0.49
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (28 bp):
TGCAGACTATTGCTTGAAAGATAGTCCA
Found at i:74732538 original size:19 final size:20
Alignment explanation
Indices: 74732514--74732557 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 20
74732504 CCTTAGGCAA
74732514 ATATGT-TTGGCACAAAGCC
1 ATATGTGTTGGCACAAAGCC
*
74732533 ATATGTAGGTTGGCGCAAAGCC
1 ATATGT--GTTGGCACAAAGCC
74732555 ATA
1 ATA
74732558 ATCAGAATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 6 0.29
22 15 0.71
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.25
Consensus pattern (20 bp):
ATATGTGTTGGCACAAAGCC
Found at i:74732766 original size:41 final size:41
Alignment explanation
Indices: 74732718--74732826 Score: 164
Period size: 41 Copynumber: 2.7 Consensus size: 41
74732708 AGATCCATGG
*
74732718 TCGTCAAGCAACCATACGATCCTTAATCAGTGGATCCACAA
1 TCGTCAAGCAACCATACGATCCTCAATCAGTGGATCCACAA
* **
74732759 TCGTCAAGCAACCATGCGATCCTCAATCAGTGGATCCACGG
1 TCGTCAAGCAACCATACGATCCTCAATCAGTGGATCCACAA
* *
74732800 TCGTCAAGCAACCATGCAATCCTCAAT
1 TCGTCAAGCAACCATACGATCCTCAAT
74732827 TTCTTCATCC
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 63 1.00
ACGTcount: A:0.31, C:0.31, G:0.17, T:0.21
Consensus pattern (41 bp):
TCGTCAAGCAACCATACGATCCTCAATCAGTGGATCCACAA
Found at i:74733118 original size:27 final size:27
Alignment explanation
Indices: 74733088--74733370 Score: 155
Period size: 27 Copynumber: 10.5 Consensus size: 27
74733078 TAAATCTATG
*
74733088 AACCAAGGGTATTTCGATAATTTTACA
1 AACCAAGGGTATTTTGATAATTTTACA
**
74733115 AACCAAGGGTATTTATG-TAATTTTTGA
1 AACCAAGGGTATTT-TGATAATTTTACA
* * * * *
74733142 AAGTCAAAGGTATTTCGGTAATTTTCCA
1 AA-CCAAGGGTATTTTGATAATTTTACA
* * *
74733170 AACCAGGGGTATTTTGGTAATTTTATA
1 AACCAAGGGTATTTTGATAATTTTACA
*** * *
74733197 AATTGAGGGTATTTAGGTAATTTTACA
1 AACCAAGGGTATTTTGATAATTTTACA
** * * *
74733224 AGTCGAGAGTA-TTTCAGTAATTTTACA
1 AACCAAGGGTATTTTGA-TAATTTTACA
**** * *
74733251 GGTTAAGGGTATTTTGGTAA-TTTATA
1 AACCAAGGGTATTTTGATAATTTTACA
**
74733277 AA-TTAGGGTATTTT-AGTAATTTTACA
1 AACCAAGGGTATTTTGA-TAATTTTACA
* *
74733303 AACC-AGGGATATTTTGATAATTTTGCT
1 AACCAAGGG-TATTTTGATAATTTTACA
* * * **
74733330 AATCGAGGGTATTTTGGTAATTTTGTA
1 AACCAAGGGTATTTTGATAATTTTACA
74733357 AACCAAGGGTATTT
1 AACCAAGGGTATTT
74733371 CAATAATTCC
Statistics
Matches: 198, Mismatches: 47, Indels: 22
0.74 0.18 0.08
Matches are distributed among these distances:
25 14 0.07
26 18 0.09
27 137 0.69
28 29 0.15
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (27 bp):
AACCAAGGGTATTTTGATAATTTTACA
Found at i:74733164 original size:55 final size:54
Alignment explanation
Indices: 74733064--74733371 Score: 176
Period size: 54 Copynumber: 5.7 Consensus size: 54
74733054 TTTCACCCTA
* * * * * * *
74733064 CAAGGGTGTTTTGGTAAATCTATGAACCAAGGGTATTTCGATAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAATCAAAGGTATTTCGGTAATTTTACAAAC
*
74733118 CAAGGGTATTTAT-GTAATTTT-TGAAAGTCAAAGGTATTTCGGTAATTTTCCAAAC
1 CAAGGGTATTT-TGGTAATTTTAT-AAA-TCAAAGGTATTTCGGTAATTTTACAAAC
* ** * * **
74733173 CAGGGGTATTTTGGTAATTTTATAAATTGAGGGTATTTAGGTAATTTTACAAGT
1 CAAGGGTATTTTGGTAATTTTATAAATCAAAGGTATTTCGGTAATTTTACAAAC
* * ** * ** * * * *
74733227 CGAGAGTATTTCAGTAATTTTACAGGTTAAGGGTATTTTGGTAA-TTTATAAA-
1 CAAGGGTATTTTGGTAATTTTATAAATCAAAGGTATTTCGGTAATTTTACAAAC
** * * * * * * * * *
74733279 TTAGGGTATTTTAGTAATTTTACAAA-CCAGGGATATTTTGATAATTTTGCTAAT
1 CAAGGGTATTTTGGTAATTTTATAAATCAAAGG-TATTTCGGTAATTTTACAAAC
* * * *
74733333 CGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTC
1 CAAGGGTATTTTGGTAATTTTATAAATCAAAGGTATTTC
74733372 AATAATTCCA
Statistics
Matches: 198, Mismatches: 47, Indels: 18
0.75 0.18 0.07
Matches are distributed among these distances:
51 4 0.02
52 30 0.15
53 12 0.06
54 100 0.51
55 51 0.26
56 1 0.01
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (54 bp):
CAAGGGTATTTTGGTAATTTTATAAATCAAAGGTATTTCGGTAATTTTACAAAC
Found at i:74733236 original size:54 final size:53
Alignment explanation
Indices: 74733092--74733353 Score: 190
Period size: 54 Copynumber: 4.9 Consensus size: 53
74733082 TCTATGAACC
* * * * ** *
74733092 AAGGGTATTTCGATAATTTTACAAACCAAGGGTA-TTTATGTAATTTTTGAAAGTC
1 AAGGGTATTTTGGTAATTTTAC-AATCGAGGGTATTTTA-GTAATTTTACAAA-TT
* * * * * * *
74733147 AAAGGTATTTCGGTAATTTTCCAAACCAGGGGTATTTTGGTAATTTTATAAATT
1 AAGGGTATTTTGGTAATTTTACAATCGA-GGGTATTTTAGTAATTTTACAAATT
* * * * **
74733201 GAGGGTATTTAGGTAATTTTACAAGTCGAGAGTATTTCAGTAATTTTACAGGTT
1 AAGGGTATTTTGGTAATTTTACAA-TCGAGGGTATTTTAGTAATTTTACAAATT
* *
74733255 AAGGGTATTTTGGTAATTTATA-AAT-TAGGGTATTTTAGTAATTTTACAAA-C
1 AAGGGTATTTTGGTAATTT-TACAATCGAGGGTATTTTAGTAATTTTACAAATT
* * * *
74733306 CAGGGATATTTTGATAATTTTGCTAATCGAGGGTATTTTGGTAATTTT
1 AAGGG-TATTTTGGTAATTTTAC-AATCGAGGGTATTTTAGTAATTTT
74733354 GTAAACCAAG
Statistics
Matches: 165, Mismatches: 34, Indels: 17
0.76 0.16 0.08
Matches are distributed among these distances:
51 5 0.03
52 33 0.20
53 4 0.02
54 81 0.49
55 39 0.24
56 3 0.02
ACGTcount: A:0.31, C:0.07, G:0.20, T:0.41
Consensus pattern (53 bp):
AAGGGTATTTTGGTAATTTTACAATCGAGGGTATTTTAGTAATTTTACAAATT
Found at i:74733324 original size:79 final size:80
Alignment explanation
Indices: 74733151--74733352 Score: 207
Period size: 79 Copynumber: 2.5 Consensus size: 80
74733141 AAAGTCAAAG
* * * * *
74733151 GTATTTCGGTAATTTTCCAAACCAGGGGTATTTTGGTAATTTTATAAATTGAGGGTATTTAGGTA
1 GTATTTCAGTAATTTTACTAATCAAGGGTATTTTGGTAA-TTTATAAATTGAGGGTATTTAGGTA
**
74733216 ATTTTACAAGTCGAGA
65 ATTTTACAAACCGAGA
* *
74733232 GTATTTCAGTAATTTTAC-AGGTTAAGGGTATTTTGGTAATTTATAAATT-AGGGTATTTTA-GT
1 GTATTTCAGTAATTTTACTA-ATCAAGGGTATTTTGGTAATTTATAAATTGAGGGTA-TTTAGGT
*
74733294 AATTTTACAAACC-AGG
64 AATTTTACAAACCGAGA
* * *
74733310 GATATTT-TGATAATTTTGCTAATCGAGGGTATTTTGGTAATTT
1 G-TATTTCAG-TAATTTTACTAATCAAGGGTATTTTGGTAATTT
74733353 TGTAAACCAA
Statistics
Matches: 102, Mismatches: 14, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
78 4 0.04
79 51 0.50
80 16 0.16
81 31 0.30
ACGTcount: A:0.30, C:0.07, G:0.21, T:0.43
Consensus pattern (80 bp):
GTATTTCAGTAATTTTACTAATCAAGGGTATTTTGGTAATTTATAAATTGAGGGTATTTAGGTAA
TTTTACAAACCGAGA
Found at i:74733369 original size:133 final size:136
Alignment explanation
Indices: 74733088--74733378 Score: 315
Period size: 133 Copynumber: 2.2 Consensus size: 136
74733078 TAAATCTATG
*
74733088 AACCAAGGGTATTTC-GATAATTTTACAAACCAAGGGTATTTATGTAATTTTTGAAAGTCAAAGG
1 AACCAAGGGTATTTCAG-TAATTTTACAAACCAAGGGTATTTATGTAATTTATGAAAGTCAAAGG
* * * * *
74733152 TATTTCGGTAATTTTCCAAACCAGGGGTATTTTGGTAATTTTATAAATTGAGGGTATTTAGGTAA
65 TATTTCAGTAATTTTACAAACCAGGGATATTTTGATAATTTTATAAATCGAGGGTATTTAGGTAA
74733217 TTTTACA
130 TTTTACA
** * * **** * *
74733224 AGTCGAGAGTATTTCAGTAATTTTACAGGTTAAGGGTATTT-TGGTAATTTAT-AAA-T-TAGGG
1 AACCAAGGGTATTTCAGTAATTTTACAAACCAAGGGTATTTAT-GTAATTTATGAAAGTCAAAGG
* * *
74733285 TATTTTAGTAATTTTACAAACCAGGGATATTTTGATAATTTTGCT-AATCGAGGGTATTTTGGTA
65 TATTTCAGTAATTTTACAAACCAGGGATATTTTGATAATTTT-ATAAATCGAGGGTATTTAGGTA
**
74733349 ATTTTGTA
129 ATTTTACA
*
74733357 AACCAAGGGTATTTCAATAATT
1 AACCAAGGGTATTTCAGTAATT
74733379 CCACCCTATA
Statistics
Matches: 126, Mismatches: 26, Indels: 9
0.78 0.16 0.06
Matches are distributed among these distances:
133 80 0.63
134 2 0.02
135 4 0.03
136 39 0.31
137 1 0.01
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (136 bp):
AACCAAGGGTATTTCAGTAATTTTACAAACCAAGGGTATTTATGTAATTTATGAAAGTCAAAGGT
ATTTCAGTAATTTTACAAACCAGGGATATTTTGATAATTTTATAAATCGAGGGTATTTAGGTAAT
TTTACA
Found at i:74733443 original size:27 final size:27
Alignment explanation
Indices: 74733363--74733431 Score: 102
Period size: 27 Copynumber: 2.6 Consensus size: 27
74733353 TGTAAACCAA
* * *
74733363 GGGTATTTCAATAATTCCACCCTATAG
1 GGGTATTTCAGTAATTCAACCCTACAG
*
74733390 GGGCATTTCAGTAATTCAACCCTACAG
1 GGGTATTTCAGTAATTCAACCCTACAG
74733417 GGGTATTTCAGTAAT
1 GGGTATTTCAGTAAT
74733432 ACTAGCCTAC
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32
Consensus pattern (27 bp):
GGGTATTTCAGTAATTCAACCCTACAG
Found at i:74748697 original size:31 final size:31
Alignment explanation
Indices: 74748661--74748731 Score: 133
Period size: 31 Copynumber: 2.3 Consensus size: 31
74748651 GTTACTGGTT
74748661 GAAGCCTTTTCATAAATCATATCACTGGGCC
1 GAAGCCTTTTCATAAATCATATCACTGGGCC
*
74748692 GAAGCCTTTTCATAAATCATATCATTGGGCC
1 GAAGCCTTTTCATAAATCATATCACTGGGCC
74748723 GAAGCCTTT
1 GAAGCCTTT
74748732 ACTATAAACG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (31 bp):
GAAGCCTTTTCATAAATCATATCACTGGGCC
Found at i:74748827 original size:42 final size:42
Alignment explanation
Indices: 74748755--74748846 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
74748745 TGGCCCTTAG
* ** *
74748755 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
*
74748797 GCCCATTTCAATATCATATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
74748839 GCCCATTT
1 GCCCATTT
74748847 GGGGAGACTA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.35, C:0.21, G:0.14, T:0.30
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:74749062 original size:26 final size:26
Alignment explanation
Indices: 74748991--74749191 Score: 334
Period size: 26 Copynumber: 7.8 Consensus size: 26
74748981 CCTCTTTAAT
*
74748991 AACTGGGGCA-AAGCCCTTTTCGATA
1 AACTGGGGCATAAGCCCTTTTCAATA
74749016 AACTGGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
* *
74749041 AACTAGGGCATAAGCCCTTTTCGATA
1 AACTGGGGCATAAGCCCTTTTCAATA
**
74749067 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
74749093 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
*
74749119 AACTGGGGCATAAGCCCTTTTCAGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
74749145 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
74749171 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
74749192 GCACTTCCTC
Statistics
Matches: 166, Mismatches: 9, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
25 33 0.20
26 133 0.80
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.26
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAATA
Found at i:74750021 original size:27 final size:27
Alignment explanation
Indices: 74749991--74750055 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
74749981 GGGCATATTC
74749991 GTCATTTTACCATACAAGGG-TATTACG
1 GTCATTTTACCATACAAGGGCT-TTACG
* * *
74750018 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCATACAAGGGCTTTACG
*
74750045 GTCTTTTTACC
1 GTCATTTTACC
74750056 TATTAGGGGT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACG
Found at i:74750139 original size:27 final size:27
Alignment explanation
Indices: 74750109--74750194 Score: 86
Period size: 27 Copynumber: 3.1 Consensus size: 27
74750099 GTAAATCTAC
74750109 AAACCAAGGGTATTTC-AGTAATTTTGT
1 AAACCAAGGGTATTTCTA-TAATTTTGT
*
74750136 AAACCAATGGTATTTCTATAATTTT-T
1 AAACCAAGGGTATTTCTATAATTTTGT
* * *
74750162 AGAAAGTCAAGGGTATTTTTTTAATTTTGT
1 --AAA-CCAAGGGTATTTCTATAATTTTGT
74750192 AAA
1 AAA
74750195 TCTGGGGTAT
Statistics
Matches: 49, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
26 1 0.02
27 22 0.45
28 7 0.14
29 18 0.37
30 1 0.02
ACGTcount: A:0.35, C:0.08, G:0.15, T:0.42
Consensus pattern (27 bp):
AAACCAAGGGTATTTCTATAATTTTGT
Found at i:74750258 original size:54 final size:54
Alignment explanation
Indices: 74750198--74750355 Score: 187
Period size: 54 Copynumber: 2.9 Consensus size: 54
74750188 TTGTAAATCT
*
74750198 GGGGTATTTTGGTAATTTTACAAA-TTGAGGGTATTTCGATAATTTCACAAACCA
1 GGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTCGATAATTTCACAAACCA
* * * * *
74750252 GTGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTA
1 GGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGATAATTTCACAAACCA
* **
74750306 GGGGTATTTTGGTAATTCTATCCTAC-AGGGGTATTTC-AGTAATTTCACAA
1 GGGGTATTTTGGTAATTTTA-CAAACTAGGGGTATTTCGA-TAATTTCACAA
74750356 TCGAGGGTAA
Statistics
Matches: 88, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
54 83 0.94
55 5 0.06
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.39
Consensus pattern (54 bp):
GGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGATAATTTCACAAACCA
Found at i:74750341 original size:27 final size:27
Alignment explanation
Indices: 74750172--74750322 Score: 180
Period size: 27 Copynumber: 5.6 Consensus size: 27
74750162 AGAAAGTCAA
** **
74750172 GGGTATTTTTTTAATTTTGTAAATCT-G
1 GGGTATTTTGGTAATTTTACAAA-CTAG
*
74750199 GGGTATTTTGGTAATTTTACAAA-TTG
1 GGGTATTTTGGTAATTTTACAAACTAG
* * * *
74750225 AGGGTATTTCGATAATTTCACAAACCAG
1 -GGGTATTTTGGTAATTTTACAAACTAG
*
74750253 TGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
74750280 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
74750307 GGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
74750323 CTATCCTACA
Statistics
Matches: 106, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
25 1 0.01
26 1 0.01
27 103 0.97
28 1 0.01
ACGTcount: A:0.28, C:0.07, G:0.21, T:0.44
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAG
Found at i:74750348 original size:81 final size:81
Alignment explanation
Indices: 74750198--74750355 Score: 187
Period size: 81 Copynumber: 2.0 Consensus size: 81
74750188 TTGTAAATCT
* * **
74750198 GGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGATAATTTCACAAACCAGTGGTATTTTG
1 GGGGTATTTTGGTAATTTTACAAATAGAGGGTATTTCGATAATTTCACAAACCAGGGGTATTTCA
*
74750263 GTAATTTTACAAACTA
66 GTAATTTCACAAACTA
* * **
74750279 GGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTGGTAA-TTCTATCCTA-CAGGGGTATT
1 GGGGTATTTTGGTAATTTTACAAA-TAGAGGGTATTTCGATAATTTC-A-CAAACCAGGGGTATT
74750341 TCAGTAATTTCACAA
63 TCAGTAATTTCACAA
74750356 TCGAGGGTAA
Statistics
Matches: 65, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
80 3 0.05
81 58 0.89
82 4 0.06
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.39
Consensus pattern (81 bp):
GGGGTATTTTGGTAATTTTACAAATAGAGGGTATTTCGATAATTTCACAAACCAGGGGTATTTCA
GTAATTTCACAAACTA
Found at i:74750362 original size:27 final size:27
Alignment explanation
Indices: 74750198--74750362 Score: 147
Period size: 27 Copynumber: 6.1 Consensus size: 27
74750188 TTGTAAATCT
* *
74750198 GGGGTATTTTGGTAATTTTACAAATTGA
1 GGGGTATTTTGGTAATTTCACAAA-CGA
* * *
74750226 -GGGTATTTCGATAATTTCACAAACCA
1 GGGGTATTTTGGTAATTTCACAAACGA
* * *
74750252 GTGGTATTTTGGTAATTTTACAAACTA
1 GGGGTATTTTGGTAATTTCACAAACGA
* *
74750279 GGGGTATTTTGGTAATTTTACAAACTA
1 GGGGTATTTTGGTAATTTCACAAACGA
**
74750306 GGGGTATTTTGGTAA-TTCTATCCTAC-A
1 GGGGTATTTTGGTAATTTC-A-CAAACGA
** *
74750333 GGGGTATTTCAGTAATTTCACAATCGA
1 GGGGTATTTTGGTAATTTCACAAACGA
74750360 GGG
1 GGG
74750363 TAAAACGGTT
Statistics
Matches: 113, Mismatches: 19, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
26 5 0.04
27 102 0.90
28 6 0.05
ACGTcount: A:0.28, C:0.11, G:0.22, T:0.38
Consensus pattern (27 bp):
GGGGTATTTTGGTAATTTCACAAACGA
Found at i:74750388 original size:27 final size:27
Alignment explanation
Indices: 74750354--74750607 Score: 294
Period size: 27 Copynumber: 9.4 Consensus size: 27
74750344 GTAATTTCAC
* * *
74750354 AATCGAGGGTAAAACGGTTATTTTTTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
74750381 AA-CTGAGGGTAAAACAGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTATA
* * * *
74750408 AATCAAGGGTAAAACTGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
74750435 AATCGAGGGTGAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
74750462 ATTCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
74750489 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * *
74750516 AATCGAGGGTAAAACTGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
74750543 AATTGAGGGTGAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * *
74750570 AATTGAGGGTAAAATGGTAATTCTACA
1 AATCGAGGGTAAAACGGTAATTCTATA
74750597 AATCGAGGGTA
1 AATCGAGGGTA
74750608 TTTCAGTAAT
Statistics
Matches: 196, Mismatches: 29, Indels: 4
0.86 0.13 0.02
Matches are distributed among these distances:
26 1 0.01
27 194 0.99
28 1 0.01
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.31
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTATA
Found at i:74752112 original size:11 final size:11
Alignment explanation
Indices: 74752096--74752150 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
74752086 CATGATTGAT
74752096 ATGATATGCAC
1 ATGATATGCAC
*
74752107 ATGATATG--T
1 ATGATATGCAC
74752116 ATGATATGCAC
1 ATGATATGCAC
*
74752127 AT-ATATG--T
1 ATGATATGCAC
74752135 ATGATATGCAC
1 ATGATATGCAC
74752146 ATGAT
1 ATGAT
74752151 GTATTCATAA
Statistics
Matches: 35, Mismatches: 4, Indels: 10
0.71 0.08 0.20
Matches are distributed among these distances:
8 2 0.06
9 13 0.37
10 5 0.14
11 15 0.43
ACGTcount: A:0.36, C:0.11, G:0.18, T:0.35
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:74752134 original size:19 final size:20
Alignment explanation
Indices: 74752085--74752150 Score: 109
Period size: 20 Copynumber: 3.4 Consensus size: 20
74752075 GTTTTGATAT
74752085 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGATATGC
74752105 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
74752125 ACAT-ATATGTATGATATGC
1 ACATGATATGTATGATATGC
74752144 ACATGAT
1 ACATGAT
74752151 GTATTCATAA
Statistics
Matches: 44, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
19 19 0.43
20 23 0.52
21 2 0.05
ACGTcount: A:0.36, C:0.11, G:0.18, T:0.35
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:74752288 original size:24 final size:25
Alignment explanation
Indices: 74752207--74752304 Score: 137
Period size: 25 Copynumber: 3.9 Consensus size: 25
74752197 AAAAGAGTTA
*
74752207 TGCCCCAGTTTACCGAAAAGGGCTTT
1 TGCCCCAGTTTATC-AAAAGGGCTTT
*
74752233 TGCCCCAGTTTATTAAAAGGGCTTT
1 TGCCCCAGTTTATCAAAAGGGCTTT
74752258 TGCCCCAGTTTATCAAAAGGGC-TT
1 TGCCCCAGTTTATCAAAAGGGCTTT
*
74752282 TGCCCCAG-TTATTAAAAGAGGCT
1 TGCCCCAGTTTATCAAAAG-GGCT
74752305 ATGTGACACC
Statistics
Matches: 66, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
23 9 0.14
24 13 0.20
25 32 0.48
26 12 0.18
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (25 bp):
TGCCCCAGTTTATCAAAAGGGCTTT
Found at i:74754058 original size:40 final size:40
Alignment explanation
Indices: 74753992--74754158 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
74753982 AAATTGAATG
* * *
74753992 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
74754031 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
74754071 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
74754111 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
74754151 ATATCCGG
1 ATATCCGG
74754159 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:74762074 original size:40 final size:40
Alignment explanation
Indices: 74762008--74762174 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
74761998 AAATTGAATG
* * *
74762008 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
74762047 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
74762087 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
74762127 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
74762167 ATATCCGG
1 ATATCCGG
74762175 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:74763795 original size:38 final size:38
Alignment explanation
Indices: 74763743--74763837 Score: 172
Period size: 38 Copynumber: 2.5 Consensus size: 38
74763733 ACCGTTTACA
* *
74763743 GAAAAGGCTCCGGCCCAGTGTTATGAAATATGAAATGT
1 GAAAAGGCTTCGGCCCAGTGTTATGAAATATGAAATAT
74763781 GAAAAGGCTTCGGCCCAGTGTTATGAAATATGAAATAT
1 GAAAAGGCTTCGGCCCAGTGTTATGAAATATGAAATAT
74763819 GAAAAGGCTTCGGCCCAGT
1 GAAAAGGCTTCGGCCCAGT
74763838 ATACGCTGAG
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
38 55 1.00
ACGTcount: A:0.34, C:0.17, G:0.26, T:0.23
Consensus pattern (38 bp):
GAAAAGGCTTCGGCCCAGTGTTATGAAATATGAAATAT
Found at i:74773569 original size:40 final size:40
Alignment explanation
Indices: 74773513--74773715 Score: 234
Period size: 40 Copynumber: 5.1 Consensus size: 40
74773503 CGGAATTCAA
* *
74773513 CCGGATATAGCT-ACTCGCTCGAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACGAATGCCTTCGGGACTTAGC
* * *
74773553 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGA
1 CCGGATATAGTAACTCGCACGAATGCCTTCGGGACTTAGC
74773593 CCGGATATAGTAACTCGCACGAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACGAATGCCTTCGGGACTTAGC
* *
74773633 CCGGATATAATAACTCACAC-AATTGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACGAA-TGCCTTCGGGACTTAGC
* * * * * *
74773672 CC-GAAATTAGTCACTAGCACAAATGCCTTTGGGACTTGGC
1 CCGGATA-TAGTAACTCGCACGAATGCCTTCGGGACTTAGC
74773712 CCGG
1 CCGG
74773716 TTATCATCCG
Statistics
Matches: 140, Mismatches: 17, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
38 3 0.02
39 29 0.21
40 107 0.76
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACGAATGCCTTCGGGACTTAGC
Found at i:74779054 original size:27 final size:27
Alignment explanation
Indices: 74779000--74779079 Score: 99
Period size: 27 Copynumber: 2.9 Consensus size: 27
74778990 TTAGAATACT
* *
74779000 TTAGTTTACTAAAATTACCGAAATACCC
1 TTAGTTT-GTAAAATTACTGAAATACCC
*
74779028 TTAGTTTGTAAAAATACTGAAATACCC
1 TTAGTTTGTAAAATTACTGAAATACCC
*
74779055 -TCGATTTGTAAAATTACTGAAATAC
1 TTAG-TTTGTAAAATTACTGAAATAC
74779080 TTTCGACTTG
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
26 2 0.04
27 37 0.80
28 7 0.15
ACGTcount: A:0.40, C:0.16, G:0.10, T:0.34
Consensus pattern (27 bp):
TTAGTTTGTAAAATTACTGAAATACCC
Found at i:74779085 original size:27 final size:27
Alignment explanation
Indices: 74779009--74779098 Score: 110
Period size: 27 Copynumber: 3.3 Consensus size: 27
74778999 TTTAGTTTAC
* *
74779009 TAAAATTACCGAAATACCCTTAG-TTTG
1 TAAAATTACTGAAATA-CCTTCGATTTG
* *
74779036 TAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACTGAAATACCTTCGATTTG
* *
74779063 TAAAATTACTGAAATACTTTCGACTTG
1 TAAAATTACTGAAATACCTTCGATTTG
74779090 TAAAATTAC
1 TAAAATTAC
74779099 CAAAGTACCC
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
26 4 0.07
27 50 0.93
ACGTcount: A:0.40, C:0.17, G:0.10, T:0.33
Consensus pattern (27 bp):
TAAAATTACTGAAATACCTTCGATTTG
Done.