Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 238 of 318
Found at i:74779123 original size:27 final size:27
Alignment explanation
Indices: 74779093--74779153 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
74779083 CGACTTGTAA
74779093 AATTACCAAAGTACCCCCGATTTATAG
1 AATTACCAAAGTACCCCCGATTTATAG
**** *
74779120 AATTACCGTTTTACCCCCGATTTATAT
1 AATTACCAAAGTACCCCCGATTTATAG
74779147 AATTACC
1 AATTACC
74779154 GTTTTACCCC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.33, C:0.26, G:0.08, T:0.33
Consensus pattern (27 bp):
AATTACCAAAGTACCCCCGATTTATAG
Found at i:74779154 original size:27 final size:27
Alignment explanation
Indices: 74779104--74779314 Score: 271
Period size: 27 Copynumber: 7.8 Consensus size: 27
74779094 ATTACCAAAG
* *
74779104 TACCCCCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
74779131 TACCCCCGATTTATATAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
74779158 TACCC-CTGATTTACATAATTATCGTTT
1 TACCCTC-GATTTACAGAATTACCGTTT
* *
74779185 TACCCTCGACTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
74779212 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* **
74779239 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
74779266 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
74779293 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
74779315 TAAAATACCC
Statistics
Matches: 165, Mismatches: 17, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
26 1 0.01
27 163 0.99
28 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.09, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:74779323 original size:27 final size:27
Alignment explanation
Indices: 74779185--74779516 Score: 127
Period size: 27 Copynumber: 12.2 Consensus size: 27
74779175 ATTATCGTTT
* * ****
74779185 TACCCTCGACTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTAAAA
* *****
74779212 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTAAAA
* * ***
74779239 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTAAAA
* * ****
74779266 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTAAAA
74779293 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* ** *
74779320 TACCCT-TAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTACAAAATTACTAAAA
* ** *
74779347 TACCC-CTAGTTTTTAAAATTACCAAAA
1 TACCCTCGA-TTTACAAAATTACTAAAA
* * *** **
74779374 TACCCTTGGTTTGTGAAATTACCGAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* ** *
74779401 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* *
74779428 TACCC-CTGATTTACAAAGTTACAAAAA
1 TACCCTC-GATTTACAAAATTACTAAAA
*
74779455 TACCCTTGACTTT-CTAAAAATTA-TAGAAA
1 TACCCTCGA-TTTAC--AAAATTACTA-AAA
* *
74779484 TACCAT-TAGTTTACAAAATTACTAAAA
1 TACCCTCGA-TTTACAAAATTACTAAAA
74779511 TACCCT
1 TACCCT
74779517 TAGTTTGTAG
Statistics
Matches: 252, Mismatches: 42, Indels: 22
0.80 0.13 0.07
Matches are distributed among these distances:
26 2 0.01
27 225 0.89
28 10 0.04
29 15 0.06
ACGTcount: A:0.36, C:0.21, G:0.08, T:0.35
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTAAAA
Found at i:74779340 original size:81 final size:81
Alignment explanation
Indices: 74779182--74779341 Score: 205
Period size: 81 Copynumber: 2.0 Consensus size: 81
74779172 ATAATTATCG
* **** *
74779182 TTTTACCCTCGACTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCG
1 TTTTACCCTCGACTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACCAAAATACCCTAG
*
74779247 ATTTATAGAATTACTA
66 ATTTATAAAATTACTA
* * *
74779263 TTTTACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTA
1 TTTTACCCTCGACTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACCAAAATACCC-TA
*
74779328 G-TTTGTAAAATTAC
65 GATTTATAAAATTAC
74779342 CAAAATACCC
Statistics
Matches: 67, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
81 65 0.97
82 2 0.03
ACGTcount: A:0.30, C:0.21, G:0.09, T:0.40
Consensus pattern (81 bp):
TTTTACCCTCGACTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACCAAAATACCCTAG
ATTTATAAAATTACTA
Found at i:74779351 original size:81 final size:81
Alignment explanation
Indices: 74779090--74779351 Score: 186
Period size: 81 Copynumber: 3.2 Consensus size: 81
74779080 TTTCGACTTG
* * * * * * * * *
74779090 TAAAATTACCAAAGTACCCCCGATTTATAGAATTACCGTTTTACCCCCGATTTATATAATTACCG
1 TAAAATTACCAAAATACCCTCGACTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACCA
***
74779155 TTTTACCCCT-GATTTA
66 AAATA-CCCTAGATTTA
* * * **** * *
74779171 CATAATTATCGTTTTACCCTCGACTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACCG
1 TAAAATTACCAAAATACCCTCGACTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACCA
*** *
74779236 TTTTACCCTCGATTTA
66 AAATACCCTAGATTTA
* * *** * * *
74779252 TAGAATTACTATTTTACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTA
1 TAAAATTACCAAAATACCCTCGACTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACCA
*
74779317 AAATACCCTTAG-TTTG
66 AAATACCC-TAGATTTA
74779333 TAAAATTACCAAAATACCC
1 TAAAATTACCAAAATACCC
74779352 CTAGTTTTTA
Statistics
Matches: 145, Mismatches: 34, Indels: 4
0.79 0.19 0.02
Matches are distributed among these distances:
80 4 0.03
81 139 0.96
82 2 0.01
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.37
Consensus pattern (81 bp):
TAAAATTACCAAAATACCCTCGACTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACCA
AAATACCCTAGATTTA
Found at i:74779532 original size:27 final size:27
Alignment explanation
Indices: 74779307--74779544 Score: 221
Period size: 27 Copynumber: 8.7 Consensus size: 27
74779297 CTCGATTTAC
*
74779307 AAAATTACTAAAATACCCTTAGTTTGT
1 AAAATTACCAAAATACCCTTAGTTTGT
* *
74779334 AAAATTACCAAAATACCCCTAGTTTTT
1 AAAATTACCAAAATACCCTTAGTTTGT
*
74779361 AAAATTACCAAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCCTTAGTTTGT
* * * *
74779388 GAAATTACCGAAATACCCTCAATTTGT
1 AAAATTACCAAAATACCCTTAGTTTGT
* *
74779415 AAAATTACCAAAATACCCCT-GATT-T
1 AAAATTACCAAAATACCCTTAGTTTGT
* * *
74779440 ACAAAGTTACAAAAATACCCTTGACTTTCT
1 A-AAA-TTACCAAAATACCCTT-AGTTTGT
* * **
74779470 AAAAATTA-TAGAAATACCATTAGTTTAC
1 -AAAATTACCA-AAATACCCTTAGTTTGT
*
74779498 AAAATTACTAAAATACCCTTAGTTTGT
1 AAAATTACCAAAATACCCTTAGTTTGT
* * *
74779525 AGATTTACCAAAACACCCTT
1 AAAATTACCAAAATACCCTT
74779545 GTAGGATGAA
Statistics
Matches: 170, Mismatches: 33, Indels: 16
0.78 0.15 0.07
Matches are distributed among these distances:
25 2 0.01
26 5 0.03
27 137 0.81
28 7 0.04
29 14 0.08
30 4 0.02
31 1 0.01
ACGTcount: A:0.41, C:0.20, G:0.07, T:0.32
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTTAGTTTGT
Found at i:74779640 original size:27 final size:27
Alignment explanation
Indices: 74779563--74779640 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
74779553 AAATGACTAA
* *
74779563 AATACCCCTAT-TAGGTAAAAAGACCGT
1 AATACCCCTGTAT-GGTAAAATGACCGT
* *
74779590 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTATGGTAAAATGACCGT
74779617 AATACCCCTGTATGGTAAAATGAC
1 AATACCCCTGTATGGTAAAATGAC
74779641 GAATATGCCC
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
26 1 0.02
27 40 0.95
28 1 0.02
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.22
Consensus pattern (27 bp):
AATACCCCTGTATGGTAAAATGACCGT
Found at i:74780900 original size:9 final size:9
Alignment explanation
Indices: 74780888--74780964 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
74780878 TTTGATAAAC
74780888 ATGATATGT
1 ATGATATGT
*
74780897 ATGATATGCAC
1 ATGATATG--T
74780908 ATGATATGT
1 ATGATATGT
*
74780917 ATGATATGCAC
1 ATGATATG--T
*
74780928 ATGACATGT
1 ATGATATGT
*
74780937 ATGATATGCAC
1 ATGATATG--T
74780948 ATGATATGT
1 ATGATATGT
74780957 ATGATATG
1 ATGATATG
74780965 CACACGAGAT
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:74780913 original size:11 final size:11
Alignment explanation
Indices: 74780897--74780968 Score: 66
Period size: 11 Copynumber: 7.1 Consensus size: 11
74780887 CATGATATGT
74780897 ATGATATGCAC
1 ATGATATGCAC
*
74780908 ATGATATG--T
1 ATGATATGCAC
74780917 ATGATATGCAC
1 ATGATATGCAC
* *
74780928 ATGACATG--T
1 ATGATATGCAC
74780937 ATGATATGCAC
1 ATGATATGCAC
*
74780948 ATGATATG--T
1 ATGATATGCAC
74780957 ATGATATGCAC
1 ATGATATGCAC
74780968 A
1 A
74780969 CGAGATGTTC
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
9 23 0.49
11 24 0.51
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:74780976 original size:20 final size:20
Alignment explanation
Indices: 74780886--74780968 Score: 157
Period size: 20 Copynumber: 4.2 Consensus size: 20
74780876 ATTTTGATAA
74780886 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
74780906 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
74780926 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
74780946 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
74780966 ACA
1 ACA
74780969 CGAGATGTTC
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:74781079 original size:24 final size:24
Alignment explanation
Indices: 74781023--74781212 Score: 269
Period size: 24 Copynumber: 8.0 Consensus size: 24
74781013 GAGGAAGTGA
74781023 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
74781046 TAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
74781070 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
74781094 AAAAGGGCTTATGCCCTAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
74781118 AAAAGGGCTTACGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
* *
74781141 TAAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATC
* *
74781165 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
74781189 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
74781213 ATGATAAAGC
Statistics
Matches: 151, Mismatches: 12, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
23 43 0.28
24 97 0.64
25 11 0.07
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:74781092 original size:47 final size:47
Alignment explanation
Indices: 74781023--74781191 Score: 284
Period size: 47 Copynumber: 3.6 Consensus size: 47
74781013 GAGGAAGTGA
74781023 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
* *
74781070 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCTAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTATC
* *
74781118 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
*
74781165 AAAAGGGCTTTTGCCCCAGTTATTAAA
1 AAAAGGGCTTATGCCCCAGTTATTAAA
74781192 AGAGGCTAGG
Statistics
Matches: 113, Mismatches: 8, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
47 69 0.61
48 44 0.39
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
Found at i:74781186 original size:95 final size:96
Alignment explanation
Indices: 74781023--74781198 Score: 309
Period size: 95 Copynumber: 1.8 Consensus size: 96
74781013 GAGGAAGTGA
* *
74781023 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
1 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
74781088 GTTATCAAAAG-GGCTTATGCCCTAGTTATC
66 GTTATCAAAAGAGGCTTATGCCCTAGTTATC
*
74781118 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTTGCCCCA
1 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
*
74781183 GTTATTAAAAGAGGCT
66 GTTATCAAAAGAGGCT
74781199 AGGCCTCCAG
Statistics
Matches: 76, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
95 72 0.95
96 4 0.05
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.27
Consensus pattern (96 bp):
AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
GTTATCAAAAGAGGCTTATGCCCTAGTTATC
Found at i:74781441 original size:31 final size:31
Alignment explanation
Indices: 74781406--74781469 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
74781396 CATTTACCGT
*
74781406 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
74781437 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
74781468 AA
1 AA
74781470 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:74783314 original size:29 final size:29
Alignment explanation
Indices: 74783180--74783315 Score: 143
Period size: 29 Copynumber: 4.8 Consensus size: 29
74783170 AACAACAATT
* * * *
74783180 TCTATAAAAGTGA-GCCTTTGGGGTTATC
1 TCTATTAAAGGGACGCCTTTGTGGCTATC
*
74783208 TCTATTAAATGGA-GACCTTTGTGGCTATC
1 TCTATTAAAGGGACG-CCTTTGTGGCTATC
* * * *
74783237 TCTGTTAAAGGAATGCCTTTGTGGCTATT
1 TCTATTAAAGGGACGCCTTTGTGGCTATC
*
74783266 TGTATT-AAGGGACGCCTTTGTGGCTATC
1 TCTATTAAAGGGACGCCTTTGTGGCTATC
*
74783294 TCTATTAAAGGGACGTCTTTGT
1 TCTATTAAAGGGACGCCTTTGT
74783316 AACATCCCAA
Statistics
Matches: 89, Mismatches: 16, Indels: 5
0.81 0.15 0.05
Matches are distributed among these distances:
28 35 0.39
29 53 0.60
30 1 0.01
ACGTcount: A:0.22, C:0.15, G:0.24, T:0.38
Consensus pattern (29 bp):
TCTATTAAAGGGACGCCTTTGTGGCTATC
Found at i:74791942 original size:50 final size:50
Alignment explanation
Indices: 74791871--74792208 Score: 333
Period size: 50 Copynumber: 6.7 Consensus size: 50
74791861 TAAGACAGTT
* *
74791871 TTAGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACTAGATTG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATTG
* * *
74791921 TTAGGTCACATGTATAGTACTAAGTGCAGGCTACTATGTGTACCT-GATAG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CTAGATTG
* * *
74791971 TTTTGATCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TCAGATGG
1 -TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACT-AGATTG
* * *
74792022 TTAGGTCACATGTGTGGTACTAAGTGCAAGCTACTACGTGTACT-GAATTA
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAG-ATTG
* * * * * * ** ** *
74792072 ATAGGTCGCATGTGTAGTGCTAAATGCAGGATACTATGCATACCCG-TTAAC
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATT--G
* * * *
74792123 TTTGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATTG
* * *
74792173 ATAGGACGCATGTGTAGTACTAAGTGCAGGCTACTA
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
74792209 TGCGTACCAG
Statistics
Matches: 231, Mismatches: 47, Indels: 20
0.78 0.16 0.07
Matches are distributed among these distances:
49 4 0.02
50 145 0.63
51 80 0.35
52 2 0.01
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (50 bp):
TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATTG
Found at i:74792026 original size:101 final size:100
Alignment explanation
Indices: 74791825--74792208 Score: 326
Period size: 101 Copynumber: 3.8 Consensus size: 100
74791815 GTTGTGGGAA
* * * *** * * *
74791825 CACATGTATAGTACTATGTACAGGCTACTATGTGTTTAAGACAGTTTTAGGTCACGTGTGTAGTA
1 CACATGTATAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTTT-GATCACATGTGTAGTA
* *
74791890 CTAAGTGTAGGCTACTACGTGTACTAGATTGTTAGGT
65 CTAAGTGCAGGCTACTACGTGTAC-AGATAGTTAGGT
* *
74791927 CACATGTATAGTACTAAGTGCAGGCTACTATGTGTACCTGATAGTTTTGATCACATGTGTAGTAC
1 CACATGTATAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTTTGATCACATGTGTAGTAC
*
74791992 TAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGT
66 TAAGTGCAGGCTACTACGTGTA-CAGATAGTTAGGT
* * * * * * *
74792028 CACATGTGTGGTACTAAGTGCAAGCTACTACGTGTA-CTGA-A-TTAATAGGTCGCATGTGTAGT
1 CACATGTATAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT--TTGATCACATGTGTAGT
* * * * ** * * * * *
74792090 GCTAAATGCAGGATACTATGCATACCCGTTAACTTTGAT
64 ACTAAGTGCAGGCTACTACGTGTA-CAGAT-AGTTAGGT
* * * * ** *
74792129 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGA-CGCATGTGTAGTAC
1 CACATGTATAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTTTGATCACATGTGTAGTAC
74792193 TAAGTGCAGGCTACTA
66 TAAGTGCAGGCTACTA
74792209 TGCGTACCAG
Statistics
Matches: 232, Mismatches: 43, Indels: 15
0.80 0.15 0.05
Matches are distributed among these distances:
98 2 0.01
99 1 0.00
100 39 0.17
101 143 0.62
102 46 0.20
104 1 0.00
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (100 bp):
CACATGTATAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTTTGATCACATGTGTAGTAC
TAAGTGCAGGCTACTACGTGTACAGATAGTTAGGT
Found at i:74792101 original size:151 final size:151
Alignment explanation
Indices: 74791825--74792208 Score: 455
Period size: 151 Copynumber: 2.5 Consensus size: 151
74791815 GTTGTGGGAA
* * * * * * * * *
74791825 CACATGTATAGTACTATGTACAGGCTACTATGTGTTTAAGACAGTTTTAGGTCACGTGTGTAGTA
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGA-TG-GTTAGGTCACATGTGTAGTA
* ** * *
74791890 CTAAGTGTAGGCTACTACGTGTACTAGATTGTTAGGTCACATGTATAGTACTAAGTGCAGGCTAC
64 CTAAGTGCAGGCTACTACGTGTACTAGATTAATAGGTCACATGTATAGTACTAAATGCAGGATAC
** * **
74791955 TATGTGTACCTGATAGTTTTGAT
129 TATGCATACCCGATAACTTTGAT
*
74791978 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACATGTGTGGTACT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACATGTGTAGTACT
* * * *
74792043 AAGTGCAAGCTACTACGTGTACT-GAATTAATAGGTCGCATGTGTAGTGCTAAATGCAGGATACT
66 AAGTGCAGGCTACTACGTGTACTAG-ATTAATAGGTCACATGTATAGTACTAAATGCAGGATACT
*
74792107 ATGCATACCCGTTAACTTTGAT
130 ATGCATACCCGATAACTTTGAT
* * * * * *
74792129 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGACGCATGTGTAGTACT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACATGTGTAGTACT
74792194 AAGTGCAGGCTACTA
66 AAGTGCAGGCTACTA
74792209 TGCGTACCAG
Statistics
Matches: 197, Mismatches: 33, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
150 1 0.01
151 160 0.81
152 1 0.01
153 35 0.18
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (151 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACATGTGTAGTACT
AAGTGCAGGCTACTACGTGTACTAGATTAATAGGTCACATGTATAGTACTAAATGCAGGATACTA
TGCATACCCGATAACTTTGAT
Found at i:74792227 original size:101 final size:100
Alignment explanation
Indices: 74791881--74792222 Score: 348
Period size: 101 Copynumber: 3.4 Consensus size: 100
74791871 TTAGGTCACG
* * * ** *
74791881 TGTGTAGTACTAAGTGTAGGCTACTACGTGTACTAGATTGTTAGGTCACATGTATAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGAGAGTTAGGTCACATGTGTAGTACTAAGT
* * * ** *
74791946 GCAGGCTACTATGTGTACCTGATAGTTTTGATCACA
66 GCAGGCTACTACGTGTACCTGATTGATAGGA-CGCA
* * *
74791982 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATG-GTTAGGTCACATGTGTGGTACTAAG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGA-GAGTTAGGTCACATGTGTAGTACTAAG
* * *
74792046 TGCAAGCTACTACGTGTA-CTGAATTAATAGGTCGCA
65 TGCAGGCTACTACGTGTACCTG-ATTGATAGGACGCA
* * * * * * * * * *
74792082 TGTGTAGTGCTAAATGCAGGATACTATGCATACCCGTTA-ACTTTGATCACGTGTGTAGTACTAA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAG--AGAGTTAGGTCACATGTGTAGTACTAA
*
74792146 GTGCAGGCTACTACGTGTACCAGATTGATAGGACGCA
64 GTGCAGGCTACTACGTGTACCTGATTGATAGGACGCA
*
74792183 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAGAG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGAGAG
74792223 CTTTGGTTAC
Statistics
Matches: 196, Mismatches: 38, Indels: 15
0.79 0.15 0.06
Matches are distributed among these distances:
99 1 0.01
100 35 0.18
101 157 0.80
102 3 0.02
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (100 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGAGAGTTAGGTCACATGTGTAGTACTAAGT
GCAGGCTACTACGTGTACCTGATTGATAGGACGCA
Found at i:74793114 original size:180 final size:180
Alignment explanation
Indices: 74792782--74793115 Score: 445
Period size: 180 Copynumber: 1.9 Consensus size: 180
74792772 AGAGCTATAA
* * * *
74792782 CATGACATAAATAATTTTTAGTGAAGAGAGGTCGGAACTGTCAAAAAATGAAATAGGGGTATATT
1 CATGAAATAAATAATTTTTAGTGAAGAAAGGTCAGAACTATCAAAAAATGAAATAGGGGTATATT
* * *
74792847 TAATGAATAAACTGTACTAATTGGTAACACTAAAAATTCTGAAAATTTTATGGGAAGAATATATG
66 TAATGAATAAACTGTACTAATTGGTAACACCAAAAATTCTGAAAATTTTATGGGAAGAAGATATA
* ***
74792912 TAAGTCTAGTCTCTGGGAAAATTAGTGGTTCTAAATTTTGAGTCCCGTTT
131 TAAGACTAGTCTCAAAGAAAATTAGTGGTTCTAAATTTTGAGTCCCGTTT
* ** * * *
74792962 CATGAAATAAATAATTTTTAGTGAAGAAAGGTCAGAATTATCGGATAGTGAAATAGGGGTATGTT
1 CATGAAATAAATAATTTTTAGTGAAGAAAGGTCAGAACTATCAAAAAATGAAATAGGGGTATATT
* * * *
74793027 TAATGAATAAACTGTACTAATTGGCTAA-ACCAAATATTTTGAAAATTTTATGGTAGGAAGATAT
66 TAATGAATAAACTGTACTAATTGG-TAACACCAAAAATTCTGAAAATTTTATGGGAAGAAGATAT
* *
74793091 ATGAGACTAGTTTCAAAGAAAATTA
130 ATAAGACTAGTCTCAAAGAAAATTA
74793116 ACAAATCTTA
Statistics
Matches: 130, Mismatches: 23, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
180 127 0.98
181 3 0.02
ACGTcount: A:0.40, C:0.08, G:0.20, T:0.32
Consensus pattern (180 bp):
CATGAAATAAATAATTTTTAGTGAAGAAAGGTCAGAACTATCAAAAAATGAAATAGGGGTATATT
TAATGAATAAACTGTACTAATTGGTAACACCAAAAATTCTGAAAATTTTATGGGAAGAAGATATA
TAAGACTAGTCTCAAAGAAAATTAGTGGTTCTAAATTTTGAGTCCCGTTT
Found at i:74797094 original size:48 final size:48
Alignment explanation
Indices: 74796924--74797086 Score: 218
Period size: 48 Copynumber: 3.4 Consensus size: 48
74796914 AATTTGTCTA
* *
74796924 TGTAAGACCATGTCTGGGACATGGCATCGACGATGATATATTTGCATG
1 TGTAAGACCATGTCTGGGACATGGCATCGACGATGATATATGTGCCTG
** * *
74796972 TGTAAGACCATGTCTGGGACATGGCATCGGTGATGATAAATGTGTCTG
1 TGTAAGACCATGTCTGGGACATGGCATCGACGATGATATATGTGCCTG
* * * * *
74797020 TGCAATACGATGTCTGGGACATGGCATCAACAATGATATATGTGCCTG
1 TGTAAGACCATGTCTGGGACATGGCATCGACGATGATATATGTGCCTG
*
74797068 TGTAATACCATGTCTGGGA
1 TGTAAGACCATGTCTGGGA
74797087 TGTGGCATGT
Statistics
Matches: 98, Mismatches: 17, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
48 98 1.00
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.29
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCGACGATGATATATGTGCCTG
Found at i:74799269 original size:42 final size:43
Alignment explanation
Indices: 74799190--74799305 Score: 98
Period size: 42 Copynumber: 2.7 Consensus size: 43
74799180 TCGTTTCAAT
* * *
74799190 GCCATATCCCAGATAC--GGTCTTACATGAAAT-ATCATACTGAC
1 GCCATATCCC-G-TACATGGTCTTATACGAAATCATCATACCGAC
* *
74799232 GCCATGTCCCCG-ACATGGTCTTATACGAAATCA-CATACCGAG
1 GCCATAT-CCCGTACATGGTCTTATACGAAATCATCATACCGAC
* * *
74799274 GTCATATCCCGTATATGGTCTTATACGGAATC
1 GCCATATCCCGTACATGGTCTTATACGAAATC
74799306 TTAATAACCT
Statistics
Matches: 60, Mismatches: 9, Indels: 10
0.76 0.11 0.13
Matches are distributed among these distances:
40 2 0.03
41 4 0.07
42 50 0.83
43 4 0.07
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (43 bp):
GCCATATCCCGTACATGGTCTTATACGAAATCATCATACCGAC
Found at i:74800604 original size:48 final size:49
Alignment explanation
Indices: 74800511--74800631 Score: 174
Period size: 48 Copynumber: 2.5 Consensus size: 49
74800501 ATCAGGATGT
**
74800511 TACATGGCATCGGTGATGAATATATGTGCCTGTGTAAGACCATGTCT-AG
1 TACATGGCATCGGTGATG-ATATATGTGCCACTGTAAGACCATGTCTAAG
* * *
74800560 TACATGGCATCGGCGATGATATGTGTGCCACTGTAAGACTATGTCTAAG
1 TACATGGCATCGGTGATGATATATGTGCCACTGTAAGACCATGTCTAAG
74800609 -ACATGGCATCGGTGATGATATAT
1 TACATGGCATCGGTGATGATATAT
74800632 AGATTTATGT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
48 45 0.70
49 19 0.30
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (49 bp):
TACATGGCATCGGTGATGATATATGTGCCACTGTAAGACCATGTCTAAG
Found at i:74800643 original size:48 final size:48
Alignment explanation
Indices: 74800511--74800665 Score: 149
Period size: 48 Copynumber: 3.2 Consensus size: 48
74800501 ATCAGGATGT
*
74800511 TACATGGCATCGGTGATGA-ATATATGTGCCTGTGTAAGACCATGTCTAG
1 TACATGGCATCGGTGATGATATATA-GTG-CTATGTAAGACCATGTCTAG
* * * *
74800560 TACATGGCATCGGCGATGATATGT-GTGCCACTGTAAGACTATGTCTAAG
1 TACATGGCATCGGTGATGATATATAGTGCTA-TGTAAGACCATGTCT-AG
* *
74800609 -ACATGGCATCGGTGATGATATATAGAT-TTATGTAAGACCAAGTC-AGG
1 TACATGGCATCGGTGATGATATATAG-TGCTATGTAAGACCATGTCTA-G
*
74800656 GACATGGCAT
1 TACATGGCAT
74800666 TGGTACTTTA
Statistics
Matches: 88, Mismatches: 11, Indels: 15
0.77 0.10 0.13
Matches are distributed among these distances:
46 1 0.01
47 2 0.02
48 59 0.67
49 22 0.25
50 4 0.05
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.28
Consensus pattern (48 bp):
TACATGGCATCGGTGATGATATATAGTGCTATGTAAGACCATGTCTAG
Found at i:74804688 original size:29 final size:29
Alignment explanation
Indices: 74804646--74804743 Score: 106
Period size: 29 Copynumber: 3.4 Consensus size: 29
74804636 GGTTGTTATA
* *
74804646 GCCTTTGAGGCTATCTCTGTTAAAGGAAT
1 GCCTTTGTGGCTATCTCTGTTAAAAGAAT
*
74804675 GCCTTTGTGGCTATCTCTGCTAAAAGAAT
1 GCCTTTGTGGCTATCTCTGTTAAAAGAAT
* * * * **
74804704 GCCTTTATGTCTACCTATGTTAATTGAAT
1 GCCTTTGTGGCTATCTCTGTTAAAAGAAT
*
74804733 GCTTTTGTGGC
1 GCCTTTGTGGC
74804744 AATAATCTGA
Statistics
Matches: 56, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 56 1.00
ACGTcount: A:0.21, C:0.18, G:0.21, T:0.39
Consensus pattern (29 bp):
GCCTTTGTGGCTATCTCTGTTAAAAGAAT
Found at i:74815527 original size:24 final size:24
Alignment explanation
Indices: 74815494--74815563 Score: 70
Period size: 24 Copynumber: 2.9 Consensus size: 24
74815484 TAATTCTTTA
*
74815494 AAAATTATAAAAATATAATTTATT
1 AAAATAATAAAAATATAATTTATT
* *
74815518 AAAATAATAAAATTATATTTTTATT
1 AAAATAATAAAAATATA-ATTTATT
* * *
74815543 AACATAA-AAATATACAATTTA
1 AAAATAATAAAAATATAATTTA
74815564 ATTCTGAGTC
Statistics
Matches: 37, Mismatches: 8, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
23 4 0.11
24 21 0.57
25 12 0.32
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (24 bp):
AAAATAATAAAAATATAATTTATT
Found at i:74825172 original size:25 final size:26
Alignment explanation
Indices: 74825124--74825172 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 26
74825114 CTCTGTTATG
*
74825124 TTTTATTTTAAGTGTTCTTTTTAAAA
1 TTTTATTTTAAGTGTTCTGTTTAAAA
* *
74825150 TTTTATTTTTA-TTTTCTGTTTAA
1 TTTTATTTTAAGTGTTCTGTTTAA
74825173 TAAAAAAAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 10 0.50
26 10 0.50
ACGTcount: A:0.22, C:0.04, G:0.06, T:0.67
Consensus pattern (26 bp):
TTTTATTTTAAGTGTTCTGTTTAAAA
Found at i:74829278 original size:46 final size:46
Alignment explanation
Indices: 74829223--74829403 Score: 224
Period size: 46 Copynumber: 3.9 Consensus size: 46
74829213 TAGGATGGTT
74829223 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * *
74829269 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C
*
74829315 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GA-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* ** * *
74829362 GAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
74829404 GCGGGTTACA
Statistics
Matches: 115, Mismatches: 13, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 4 0.03
45 2 0.02
46 70 0.61
47 33 0.29
48 2 0.02
50 4 0.03
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:74829384 original size:93 final size:93
Alignment explanation
Indices: 74829225--74829396 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
74829215 GGATGGTTGA
* *
74829225 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
74829290 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
74829318 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
74829383 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
74829397 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:74832335 original size:15 final size:15
Alignment explanation
Indices: 74832315--74832383 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
74832305 GTATCTTGGG
74832315 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
74832330 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
74832345 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
74832360 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
74832375 TTTCTTTAT
1 TTTCTTTAT
74832384 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:74832384 original size:30 final size:30
Alignment explanation
Indices: 74832306--74832393 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
74832296 CATAGTATCG
* * * *
74832306 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
74832336 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
74832366 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
74832394 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:74834530 original size:46 final size:46
Alignment explanation
Indices: 74834475--74834655 Score: 224
Period size: 46 Copynumber: 3.9 Consensus size: 46
74834465 TAGGATGGTT
74834475 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * *
74834521 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C
*
74834567 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GA-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* ** * *
74834614 GAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
74834656 GCGGGTTACA
Statistics
Matches: 115, Mismatches: 13, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 4 0.03
45 2 0.02
46 70 0.61
47 33 0.29
48 2 0.02
50 4 0.03
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:74834636 original size:93 final size:93
Alignment explanation
Indices: 74834477--74834648 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
74834467 GGATGGTTGA
* *
74834477 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
74834542 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
74834570 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
74834635 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
74834649 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:74838741 original size:10 final size:10
Alignment explanation
Indices: 74838726--74838753 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
74838716 AGTCTAATTA
74838726 ATGTGTTGGT
1 ATGTGTTGGT
74838736 ATGTGTTGGT
1 ATGTGTTGGT
74838746 ATGTGTTG
1 ATGTGTTG
74838754 TAGTTTAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.11, C:0.00, G:0.39, T:0.50
Consensus pattern (10 bp):
ATGTGTTGGT
Found at i:74841670 original size:40 final size:40
Alignment explanation
Indices: 74841625--74841791 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
74841615 CGGAATATAA
74841625 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
74841665 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
74841705 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
74841745 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
74841784 CCGGATAT
1 CCGGATAT
74841792 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:74849675 original size:40 final size:40
Alignment explanation
Indices: 74849630--74849796 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
74849620 CGGAATATAA
74849630 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
74849670 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
74849710 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
74849750 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
74849789 CCGGATAT
1 CCGGATAT
74849797 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:74853349 original size:61 final size:61
Alignment explanation
Indices: 74853274--74853403 Score: 224
Period size: 61 Copynumber: 2.1 Consensus size: 61
74853264 CTAAACAGGG
*
74853274 GTCACATGCCCGTGTCAAAATCCCATGTAACTCTCTTTTTATCACTCAAGAACAAATTGAA
1 GTCACATGCCCGTGTCAAAATCCCATGTAACTCTCTGTTTATCACTCAAGAACAAATTGAA
**
74853335 GTCACATGCCCGTGTCCTAATCCCATGTAACTCTCTGTTTATCACTCAAGAACAAATTGAA
1 GTCACATGCCCGTGTCAAAATCCCATGTAACTCTCTGTTTATCACTCAAGAACAAATTGAA
*
74853396 GACACATG
1 GTCACATG
74853404 GCCAAGTCAC
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
61 65 1.00
ACGTcount: A:0.32, C:0.27, G:0.13, T:0.28
Consensus pattern (61 bp):
GTCACATGCCCGTGTCAAAATCCCATGTAACTCTCTGTTTATCACTCAAGAACAAATTGAA
Found at i:74855816 original size:27 final size:28
Alignment explanation
Indices: 74855759--74855828 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
74855749 AAACTTGTAC
*
74855759 AGCACTAAGTGTGCGAGTTTGATCATGT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
74855787 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
74855814 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
74855829 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:74855839 original size:27 final size:27
Alignment explanation
Indices: 74855759--74855840 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
74855749 AAACTTGTAC
* * *
74855759 AGCACTAAGTGTGCGAGTTTGA-TCATGT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
74855787 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
74855814 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
74855841 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:74863746 original size:27 final size:28
Alignment explanation
Indices: 74863689--74863758 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
74863679 AAACTTGTAC
*
74863689 AGCACTAAGTGTGCGAGTTTGATCATGT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
74863717 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
74863744 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
74863759 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:74863769 original size:27 final size:27
Alignment explanation
Indices: 74863689--74863770 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
74863679 AAACTTGTAC
* * *
74863689 AGCACTAAGTGTGCGAGTTTGA-TCATGT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
74863717 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
74863744 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
74863771 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:74875832 original size:40 final size:40
Alignment explanation
Indices: 74875787--74875954 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
74875777 CGGAATATAA
74875787 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
74875827 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
74875867 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
74875907 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
74875947 CCGGATAT
1 CCGGATAT
74875955 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:74883842 original size:40 final size:40
Alignment explanation
Indices: 74883797--74883964 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
74883787 CGGAATATAA
74883797 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
74883837 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
74883877 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
74883917 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
74883957 CCGGATAT
1 CCGGATAT
74883965 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:74885231 original size:56 final size:53
Alignment explanation
Indices: 74885170--74885273 Score: 129
Period size: 56 Copynumber: 1.9 Consensus size: 53
74885160 CCTTAGTATT
74885170 TTCGGCC-AAGAAGATGAGAAAGGATGAACAAATTTTTCTTTTCTTTCTTTAGGACA
1 TTCGGCCAAAG-AGATGAGAAAGGATGAAC-AATTTTT-TTTT-TTTCTTTAGGACA
* * * *
74885226 TTCGGCCAAAGTGTTTAGAATGGATGAACAATTTTTTTTTTTTCTTTA
1 TTCGGCCAAAGAGATGAGAAAGGATGAACAATTTTTTTTTTTTCTTTA
74885274 ATGCTAGTCT
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
53 8 0.19
54 4 0.09
55 7 0.16
56 21 0.49
57 3 0.07
ACGTcount: A:0.29, C:0.12, G:0.18, T:0.40
Consensus pattern (53 bp):
TTCGGCCAAAGAGATGAGAAAGGATGAACAATTTTTTTTTTTTCTTTAGGACA
Found at i:74887228 original size:40 final size:40
Alignment explanation
Indices: 74887184--74887313 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
74887174 CGGAATTTGG
* * * *
74887184 CTCGGATGTAACAACCAGCACAAATGCCTTCGGGACTTAA
1 CTCGGATATAATAACCCGCACGAATGCCTTCGGGACTTAA
*
74887224 CTCGGTTATAATAACCCGCACGAATGCCTTCGGGACTTAA
1 CTCGGATATAATAACCCGCACGAATGCCTTCGGGACTTAA
* *
74887264 C-CCGATTATAATAACCCGCACGAATGCCTTTGGGACTTAA
1 CTCGGA-TATAATAACCCGCACGAATGCCTTCGGGACTTAA
* *
74887304 CCCGGTTATA
1 CTCGGATATA
74887314 TTTTTTTTTT
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 2 0.03
40 74 0.95
41 2 0.03
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (40 bp):
CTCGGATATAATAACCCGCACGAATGCCTTCGGGACTTAA
Found at i:74890584 original size:16 final size:16
Alignment explanation
Indices: 74890554--74890597 Score: 81
Period size: 16 Copynumber: 2.8 Consensus size: 16
74890544 TGATGTACTT
74890554 CTCTCTCTT-GTAATC
1 CTCTCTCTTGGTAATC
74890569 CTCTCTCTTGGTAATC
1 CTCTCTCTTGGTAATC
74890585 CTCTCTCTTGGTA
1 CTCTCTCTTGGTA
74890598 CCACAGATAC
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
15 9 0.32
16 19 0.68
ACGTcount: A:0.11, C:0.32, G:0.11, T:0.45
Consensus pattern (16 bp):
CTCTCTCTTGGTAATC
Found at i:74894088 original size:25 final size:24
Alignment explanation
Indices: 74894034--74894096 Score: 63
Period size: 25 Copynumber: 2.5 Consensus size: 24
74894024 TACAAGCTAT
* * *
74894034 GAATCAGTATGCTCTTACGAGTAA
1 GAATCGGTAAGCTCATACGAGTAA
*
74894058 GAAATCGGTAAGCTCATACGAGCTGA
1 G-AATCGGTAAGCTCATACGAG-TAA
*
74894084 GAATCGATAAGCT
1 GAATCGGTAAGCT
74894097 TTGTGAAATC
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
24 1 0.03
25 28 0.88
26 3 0.09
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.24
Consensus pattern (24 bp):
GAATCGGTAAGCTCATACGAGTAA
Found at i:74895869 original size:29 final size:29
Alignment explanation
Indices: 74895748--74895871 Score: 153
Period size: 29 Copynumber: 4.3 Consensus size: 29
74895738 GTGATCTCTA
* *
74895748 TTAAAAGGAAGCCTTTGTGACTATCTTTG
1 TTAAAAGAAAGCCTTTGTGACAATCTTTG
*
74895777 TGAAAATG-AAGCCTTTGTGACAATCTTTG
1 TTAAAA-GAAAGCCTTTGTGACAATCTTTG
*
74895806 TTAAAAGAAAGCCTTTGTGATAATCTCTT-
1 TTAAAAGAAAGCCTTTGTGACAATCT-TTG
* *
74895835 TTAAAAGAAAGCCTTTGTGGCAGTCTTTG
1 TTAAAAGAAAGCCTTTGTGACAATCTTTG
*
74895864 TCAAAAGA
1 TTAAAAGA
74895872 TGCCTTCGTG
Statistics
Matches: 83, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
28 3 0.04
29 77 0.93
30 3 0.04
ACGTcount: A:0.32, C:0.14, G:0.19, T:0.35
Consensus pattern (29 bp):
TTAAAAGAAAGCCTTTGTGACAATCTTTG
Found at i:74895892 original size:87 final size:86
Alignment explanation
Indices: 74895711--74895877 Score: 212
Period size: 87 Copynumber: 1.9 Consensus size: 86
74895701 TCTTTTATGT
* * * * *
74895711 CAATTTTTGTAAAACAATGCCTTTGTGGTGATCTCTATTAAAAGGAAGCCTTTGTGACTATCTTT
1 CAATCTTTGTAAAACAAAGCCTTTGTGATAATCTCTATTAAAAGAAAGCCTTTGTGACTATCTTT
*
74895776 GTGAAAATGAAGCCTTTGTGA
66 GTCAAAATGAAGCCTTTGTGA
* * *
74895797 CAATCTTTGTTAAAAGAAAGCCTTTGTGATAATCTCTTTTAAAAGAAAGCCTTTGTGGC-AGTCT
1 CAATCTTTG-TAAAACAAAGCCTTTGTGATAATCTCTATTAAAAGAAAGCCTTTGTGACTA-TCT
*
74895861 TTGTCAAAA-GATGCCTT
64 TTGTCAAAATGAAGCCTT
74895878 CGTGGTGAGA
Statistics
Matches: 69, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
86 16 0.23
87 53 0.77
ACGTcount: A:0.30, C:0.15, G:0.19, T:0.37
Consensus pattern (86 bp):
CAATCTTTGTAAAACAAAGCCTTTGTGATAATCTCTATTAAAAGAAAGCCTTTGTGACTATCTTT
GTCAAAATGAAGCCTTTGTGA
Found at i:74899365 original size:40 final size:39
Alignment explanation
Indices: 74899200--74899383 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
74899190 AAATTGAATG
* * *
74899200 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
74899240 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
74899280 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
74899320 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
74899359 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
74899384 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:74899408 original size:80 final size:81
Alignment explanation
Indices: 74899240--74899428 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
74899230 GCTGGAAATT
* * * *
74899240 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
74899305 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
74899321 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
74899384 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
74899400 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
74899429 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:74901051 original size:41 final size:42
Alignment explanation
Indices: 74900931--74901083 Score: 130
Period size: 43 Copynumber: 3.6 Consensus size: 42
74900921 CATAGGATTT
* * * * * *
74900931 TCGATATGTGTTTTCGTGTAATACCATATCTTGGACATTGGCG
1 TCGATATGTGATTTC-TGTAAGACCATGTCTAGGACAGTGGCA
* *
74900974 TCGATATGTGACTACATGTAAGACCATGTCTAGGACA-TCGGCA
1 TCGATATGTGATTTC-TGTAAGACCATGTCTAGGACAGT-GGCA
* * * *
74901017 TCG-TATTTGATTTCTGTAAGACCCTGTTTGGGACAGTGGCA
1 TCGATATGTGATTTCTGTAAGACCATGTCTAGGACAGTGGCA
**
74901058 TCGATATGTGATAGCATGTAAGACCA
1 TCGATATGTGATTTC-TGTAAGACCA
74901084 CATTTGGGAC
Statistics
Matches: 88, Mismatches: 18, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
41 25 0.28
42 18 0.20
43 45 0.51
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.33
Consensus pattern (42 bp):
TCGATATGTGATTTCTGTAAGACCATGTCTAGGACAGTGGCA
Found at i:74901090 original size:43 final size:42
Alignment explanation
Indices: 74900963--74901101 Score: 117
Period size: 43 Copynumber: 3.3 Consensus size: 42
74900953 ACCATATCTT
* * * * *
74900963 GGACATTGGCGTCGATATGTGACTACATGTAAGACCATGTCTA
1 GGACAGTGGCATCGATATGTGA-TACATGTAAGACCACGTTTG
* *
74901006 GGACA-TCGGCATCG-TATTTGATTTC-TGTAAGACC-CTGTTTG
1 GGACAGT-GGCATCGATATGTGA-TACATGTAAGACCAC-GTTTG
*
74901047 GGACAGTGGCATCGATATGTGATAGCATGTAAGACCACATTTG
1 GGACAGTGGCATCGATATGTGATA-CATGTAAGACCACGTTTG
74901090 GGAC-GTTGGCAT
1 GGACAG-TGGCAT
74901102 TGTACAATAT
Statistics
Matches: 78, Mismatches: 10, Indels: 16
0.75 0.10 0.15
Matches are distributed among these distances:
41 25 0.32
42 18 0.23
43 34 0.44
44 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (42 bp):
GGACAGTGGCATCGATATGTGATACATGTAAGACCACGTTTG
Found at i:74908148 original size:58 final size:58
Alignment explanation
Indices: 74908058--74908170 Score: 181
Period size: 58 Copynumber: 1.9 Consensus size: 58
74908048 ATCTTTGATT
* * * *
74908058 GTCGAGACAGCCACATTACGAGCCATTTCTCTCTAAAGCTTAGCAAACTCCAGAAATC
1 GTCGAGACAGCCACATCACGAGCCATTTCTCTCCAAAGCCTAACAAACTCCAGAAATC
*
74908116 GTCGAGACAGCCACATCACGAGCTATTTCTCTCCAAAGCCTAACAAACTCCAGAA
1 GTCGAGACAGCCACATCACGAGCCATTTCTCTCCAAAGCCTAACAAACTCCAGAA
74908171 TTTGTTCTAG
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
58 50 1.00
ACGTcount: A:0.34, C:0.31, G:0.15, T:0.20
Consensus pattern (58 bp):
GTCGAGACAGCCACATCACGAGCCATTTCTCTCCAAAGCCTAACAAACTCCAGAAATC
Found at i:74911235 original size:40 final size:40
Alignment explanation
Indices: 74911161--74911306 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
74911151 CCGCACCAAG
* * * * * *
74911161 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
74911201 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* * * *
74911241 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
*
74911281 GCCTTCGGGTCTTAACCCGGATATAA
1 GCCTTCGGGTCTTAGCCCGGATATAA
74911307 TTTTCAGCAT
Statistics
Matches: 90, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 90 1.00
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
Found at i:74911321 original size:40 final size:40
Alignment explanation
Indices: 74911193--74911344 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
74911183 ATCACGATTT
* * * * *
74911193 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
74911233 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
* * **
74911273 GCACAATTGCCTTCGGGTCTTAACCCGGATATA-ATTTTCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACT-A
* * *
74911313 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
74911345 CATTCAATTT
Statistics
Matches: 97, Mismatches: 12, Indels: 6
0.84 0.10 0.05
Matches are distributed among these distances:
39 4 0.04
40 91 0.94
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.29
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
Found at i:74919351 original size:40 final size:40
Alignment explanation
Indices: 74919277--74919422 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
74919267 CCGCACCAAG
* * * * * *
74919277 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
74919317 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* * * *
74919357 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
*
74919397 GCCTTCGGGTCTTAACCCGGATATAA
1 GCCTTCGGGTCTTAGCCCGGATATAA
74919423 TTTTCAGCAT
Statistics
Matches: 90, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 90 1.00
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
Found at i:74919437 original size:40 final size:40
Alignment explanation
Indices: 74919309--74919460 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
74919299 ATCACGATTT
* * * * *
74919309 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
74919349 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
* * **
74919389 GCACAATTGCCTTCGGGTCTTAACCCGGATATA-ATTTTCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACT-A
* * *
74919429 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
74919461 CATTCAATTT
Statistics
Matches: 97, Mismatches: 12, Indels: 6
0.84 0.10 0.05
Matches are distributed among these distances:
39 4 0.04
40 91 0.94
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.29
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
Found at i:74921535 original size:37 final size:37
Alignment explanation
Indices: 74921485--74921558 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
74921475 ACTATGAGTA
74921485 GGGTTGTGACTATTACCTAATAATCAAAGAATGTTGT
1 GGGTTGTGACTATTACCTAATAATCAAAGAATGTTGT
74921522 GGGTTGTGACTATTACCTAATAATCAAAGAATGTTGT
1 GGGTTGTGACTATTACCTAATAATCAAAGAATGTTGT
74921559 TCTCTAACAC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.32, C:0.11, G:0.22, T:0.35
Consensus pattern (37 bp):
GGGTTGTGACTATTACCTAATAATCAAAGAATGTTGT
Found at i:74927016 original size:5 final size:6
Alignment explanation
Indices: 74926983--74927023 Score: 55
Period size: 6 Copynumber: 6.5 Consensus size: 6
74926973 ATAATTTAAT
*
74926983 AAATAA AAATACA AATCTAA AAATAA AAATAA AAATAA AAA
1 AAATAA AAATA-A AA-ATAA AAATAA AAATAA AAATAA AAA
74927024 AACATATAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 23 0.74
7 6 0.19
8 2 0.06
ACGTcount: A:0.78, C:0.05, G:0.00, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:74927024 original size:20 final size:20
Alignment explanation
Indices: 74926983--74927025 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
74926973 ATAATTTAAT
* **
74926983 AAATAAAAATACAAATCTAA
1 AAATAAAAATAAAAATAAAA
74927003 AAATAAAAATAAAAATAAAA
1 AAATAAAAATAAAAATAAAA
74927023 AAA
1 AAA
74927026 CATATAATTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.79, C:0.05, G:0.00, T:0.16
Consensus pattern (20 bp):
AAATAAAAATAAAAATAAAA
Found at i:74927058 original size:9 final size:9
Alignment explanation
Indices: 74927044--74927120 Score: 82
Period size: 9 Copynumber: 8.6 Consensus size: 9
74927034 TTTATACAAA
*
74927044 TAATTCAGT
1 TAATTCGGT
*
74927053 TAATTCAGT
1 TAATTCGGT
* *
74927062 TAATTGGGG
1 TAATTCGGT
*
74927071 TAATTCGGG
1 TAATTCGGT
74927080 TAATTCGGT
1 TAATTCGGT
*
74927089 TAATTCGAT
1 TAATTCGGT
*
74927098 TAATTTGGT
1 TAATTCGGT
*
74927107 CAATTCGGT
1 TAATTCGGT
74927116 TAATT
1 TAATT
74927121 TTGTACTTAT
Statistics
Matches: 57, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 57 1.00
ACGTcount: A:0.27, C:0.09, G:0.21, T:0.43
Consensus pattern (9 bp):
TAATTCGGT
Found at i:74928592 original size:26 final size:25
Alignment explanation
Indices: 74928559--74928610 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 25
74928549 AATTACAGGT
*
74928559 TTTATAATGTT-TTTATTAAAGTTAA
1 TTTATAAT-TTATGTATTAAAGTTAA
*
74928584 TTTAGTAATTTATGTATTAAGGTTAA
1 TTTA-TAATTTATGTATTAAAGTTAA
74928610 T
1 T
74928611 AAAATAAAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
25 6 0.26
26 17 0.74
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.54
Consensus pattern (25 bp):
TTTATAATTTATGTATTAAAGTTAA
Found at i:74932793 original size:29 final size:29
Alignment explanation
Indices: 74932758--74932831 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
74932748 GTTGTGAGAT
* *
74932758 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
74932787 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
74932816 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
74932832 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:74940894 original size:29 final size:29
Alignment explanation
Indices: 74940859--74940932 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
74940849 GTTGTGAGAT
* *
74940859 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
74940888 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
74940917 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
74940933 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:74942826 original size:68 final size:70
Alignment explanation
Indices: 74942754--74942951 Score: 267
Period size: 71 Copynumber: 2.8 Consensus size: 70
74942744 ACACCCTGTA
* * * *
74942754 GTAGCTAGGTCACATGTGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGTGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
74942816 ATAAAT
65 ATAAAT
*
74942822 GTAGCTAGGTCGCATGTGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGTGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
74942887 ATAAAT
65 ATAAAT
* * * *
74942893 GTAGCTGGGTCGCATGCGTGATTCCAAGTGACGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGTGTGATACCAAGTGA-AGACACCATGTAGACAAGAGAGCTACG
74942952 AGACAAATCG
Statistics
Matches: 117, Mismatches: 8, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
68 24 0.21
69 3 0.03
70 1 0.01
71 89 0.76
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGTGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:74942877 original size:71 final size:71
Alignment explanation
Indices: 74942788--74942951 Score: 301
Period size: 71 Copynumber: 2.3 Consensus size: 71
74942778 GAGATGTATC
*
74942788 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGTGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
74942853 AGGACA
66 AGGACA
*
74942859 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTGGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
74942924 CGGACA
66 AGGACA
74942930 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
74942952 AGACAAATCG
Statistics
Matches: 90, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
71 90 1.00
ACGTcount: A:0.34, C:0.18, G:0.29, T:0.20
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:74951761 original size:83 final size:79
Alignment explanation
Indices: 74951564--74951783 Score: 295
Period size: 83 Copynumber: 2.8 Consensus size: 79
74951554 ACCCAAGTAT
* * * *
74951564 CTTCGGGATTTAGCC-GATATAGCAACTCGCACAAATGCCTTC-GGTCTTAGCCC-GATATAGTC
1 CTTCGGGACTTAGCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTC
*
74951626 ACTAGCATAAATGC
66 ACTAGCACAAATGC
* *
74951640 CTTCGGGACTTAGCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAG-C
1 CTTCGGGACTTAGCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTC
74951704 AACTACTCGCACAAATGC
66 -ACTA---GCACAAATGC
*
74951722 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAG-CCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
74951784 CATCCGAATA
Statistics
Matches: 126, Mismatches: 10, Indels: 9
0.87 0.07 0.06
Matches are distributed among these distances:
76 14 0.11
77 24 0.19
78 11 0.09
79 10 0.08
82 22 0.17
83 45 0.36
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (79 bp):
CTTCGGGACTTAGCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTC
ACTAGCACAAATGC
Found at i:74951767 original size:40 final size:40
Alignment explanation
Indices: 74951564--74951783 Score: 288
Period size: 40 Copynumber: 5.5 Consensus size: 40
74951554 ACCCAAGTAT
* * *
74951564 CTTCGGGATTTAG-CC-GATATAGCAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGC
* * *
74951602 CTTC-GGTCTTAGCCC-GATATAGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGC
*
74951640 CTTCGGGACTTAG-CCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGC
* *
74951679 CTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTA---GCACAAATGC
*
74951722 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGC
74951762 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
74951784 CATCCGAATA
Statistics
Matches: 161, Mismatches: 14, Indels: 12
0.86 0.07 0.06
Matches are distributed among these distances:
37 6 0.04
38 31 0.19
39 42 0.26
40 45 0.28
43 37 0.23
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGC
Found at i:74959754 original size:40 final size:40
Alignment explanation
Indices: 74959677--74959899 Score: 285
Period size: 40 Copynumber: 5.5 Consensus size: 40
74959667 ACCCAAGTAT
* *
74959677 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* *
74959716 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
74959756 CTTCGGGACCTGGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
74959796 CTTTC-GGACTTAGCCCGG-TATAG-CAACTACTCGCACAAATGC
1 C-TTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
* *
74959838 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
74959878 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
74959900 CATCCGAATA
Statistics
Matches: 162, Mismatches: 12, Indels: 19
0.84 0.06 0.10
Matches are distributed among these distances:
38 1 0.01
39 20 0.12
40 102 0.63
41 7 0.04
42 24 0.15
43 8 0.05
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:74959859 original size:82 final size:80
Alignment explanation
Indices: 74959677--74959899 Score: 285
Period size: 82 Copynumber: 2.8 Consensus size: 80
74959667 ACCCAAGTAT
* * *
74959677 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
*
74959740 TCACTAGCATAAATGC
65 TCACTAGCACAAATGC
* *
74959756 CTTCGGGACCTGGCCCGGATATAGTCACTAGCACAAATGCCTTTC-GGACTTAGCCCGG-TATAG
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCC-TTCGGGACTTAGCCCGGATATAG
74959819 -CAACTACTCGCACAAATGC
65 TC-ACTA---GCACAAATGC
* *
74959838 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
74959900 CATCCGAATA
Statistics
Matches: 125, Mismatches: 10, Indels: 14
0.84 0.07 0.09
Matches are distributed among these distances:
78 1 0.01
79 19 0.15
80 36 0.29
81 7 0.06
82 59 0.47
83 3 0.02
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:74970853 original size:26 final size:25
Alignment explanation
Indices: 74970824--74970879 Score: 60
Period size: 25 Copynumber: 2.2 Consensus size: 25
74970814 AAATAATATG
74970824 TCACAAAAGCACTTTCAGG-TAATACA
1 TCACAAAAGC-CTTTC-GGATAATACA
* * *
74970850 TCACATAGGCTTTTCGGATAATACA
1 TCACAAAAGCCTTTCGGATAATACA
74970875 TCACA
1 TCACA
74970880 TGGGCTCTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
24 2 0.08
25 16 0.62
26 8 0.31
ACGTcount: A:0.38, C:0.23, G:0.12, T:0.27
Consensus pattern (25 bp):
TCACAAAAGCCTTTCGGATAATACA
Found at i:74970871 original size:25 final size:25
Alignment explanation
Indices: 74970843--74970896 Score: 83
Period size: 25 Copynumber: 2.2 Consensus size: 25
74970833 CACTTTCAGG
74970843 TAATACATCACATAGGCT-TTTCGGA
1 TAATACATCACATAGGCTCTTT-GGA
*
74970868 TAATACATCACATGGGCTCTTTGGA
1 TAATACATCACATAGGCTCTTTGGA
74970893 TAAT
1 TAAT
74970897 TCACCACAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
25 24 0.89
26 3 0.11
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33
Consensus pattern (25 bp):
TAATACATCACATAGGCTCTTTGGA
Found at i:74970904 original size:25 final size:25
Alignment explanation
Indices: 74970851--74970960 Score: 112
Period size: 25 Copynumber: 4.4 Consensus size: 25
74970841 GGTAATACAT
* * * *
74970851 CACATAGGCTTTTCGGATAATACAT
1 CACAAAGGCTCTTCGGATAATTCAC
** *
74970876 CACATGGGCTCTTTGGATAATTCAC
1 CACAAAGGCTCTTCGGATAATTCAC
* * *
74970901 CACAAGGGCACTTCGAATAATTCAC
1 CACAAAGGCTCTTCGGATAATTCAC
*
74970926 CACAAAGGCTCTTCAGATAATTCAC
1 CACAAAGGCTCTTCGGATAATTCAC
*
74970951 CATAAAGGCT
1 CACAAAGGCT
74970961 TGATTTGGTT
Statistics
Matches: 71, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 71 1.00
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.26
Consensus pattern (25 bp):
CACAAAGGCTCTTCGGATAATTCAC
Found at i:74972709 original size:25 final size:25
Alignment explanation
Indices: 74972645--74972710 Score: 87
Period size: 25 Copynumber: 2.6 Consensus size: 25
74972635 CAGGCCCATT
**
74972645 TTCACAACTCATGTGAGTATTCTGA
1 TTCACAACTCATGTGAACATTCTGA
* *
74972670 TTCATAGCTCATGTGAACATTCTGA
1 TTCACAACTCATGTGAACATTCTGA
*
74972695 TTCACAACTCGTGTGA
1 TTCACAACTCATGTGA
74972711 GCATACATGT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.35
Consensus pattern (25 bp):
TTCACAACTCATGTGAACATTCTGA
Found at i:74975719 original size:40 final size:40
Alignment explanation
Indices: 74975502--74975719 Score: 280
Period size: 40 Copynumber: 5.5 Consensus size: 40
74975492 AAGCCAAGTA
* * * *
74975502 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * * *
74975541 CCTTTGGGACATAGCCCGAATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
74975581 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
74975621 CCTTCGGGACTTAGCCTGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
74975661 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
74975701 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
74975720 TTATCATCCA
Statistics
Matches: 158, Mismatches: 18, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
39 12 0.08
40 146 0.92
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:74979001 original size:40 final size:40
Alignment explanation
Indices: 74978945--74979147 Score: 286
Period size: 40 Copynumber: 5.1 Consensus size: 40
74978935 CGGAATTCAA
* * *
74978945 CCGGATATAGCT-ACTCGCTCGAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
74978985 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
74979025 CCGGATATAGTAACTCGCACGAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
74979065 CCGGATATAATAACTCGCACAATTGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
74979104 CCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
74979144 CCGG
1 CCGG
74979148 TTATCATCCG
Statistics
Matches: 147, Mismatches: 13, Indels: 6
0.89 0.08 0.04
Matches are distributed among these distances:
38 1 0.01
39 34 0.23
40 112 0.76
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.23
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:74980664 original size:13 final size:13
Alignment explanation
Indices: 74980646--74980682 Score: 65
Period size: 13 Copynumber: 2.8 Consensus size: 13
74980636 TTTATTCTTT
*
74980646 CTAACATAACACA
1 CTAACACAACACA
74980659 CTAACACAACACA
1 CTAACACAACACA
74980672 CTAACACAACA
1 CTAACACAACA
74980683 TGTTTACAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.54, C:0.35, G:0.00, T:0.11
Consensus pattern (13 bp):
CTAACACAACACA
Found at i:74987205 original size:40 final size:40
Alignment explanation
Indices: 74987149--74987391 Score: 332
Period size: 40 Copynumber: 6.1 Consensus size: 40
74987139 CGGAATTCAA
* *
74987149 CCGGATATAGCT-ACTCGCTCGAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACGAATGCCTTCGGGACTTAGC
* * *
74987189 CTGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACGAATGCCTTCGGGACTTAGC
74987229 CCGGATATAGTAACTCGCACGAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACGAATGCCTTCGGGACTTAGC
*
74987269 CCGGATATAGTAACTCGCACGAATGCCTTCGAGACTTAGC
1 CCGGATATAGTAACTCGCACGAATGCCTTCGGGACTTAGC
* *
74987309 CCGGATATAATAACTCGCAC-AATTGCCTTTGGG-CTTAGC
1 CCGGATATAGTAACTCGCACGAA-TGCCTTCGGGACTTAGC
* * *
74987348 CCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACGAATGCCTTCGGGACTTAGC
74987388 CCGG
1 CCGG
74987392 TTATCATCCG
Statistics
Matches: 182, Mismatches: 16, Indels: 10
0.88 0.08 0.05
Matches are distributed among these distances:
38 1 0.01
39 33 0.18
40 148 0.81
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACGAATGCCTTCGGGACTTAGC
Found at i:74989789 original size:26 final size:25
Alignment explanation
Indices: 74989760--74989810 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 25
74989750 ACATATTTAT
* *
74989760 TGATTTTGATTAGCTATCAAAGCCAC
1 TGATTTCGATTAGCTAAC-AAGCCAC
74989786 TGATTTCGATTAGCTAACAAGCCAC
1 TGATTTCGATTAGCTAACAAGCCAC
74989811 ATAGCCAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (25 bp):
TGATTTCGATTAGCTAACAAGCCAC
Found at i:74998446 original size:20 final size:20
Alignment explanation
Indices: 74998399--74998449 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
74998389 TTGGAGGGTC
*
74998399 ACACGCCCGTGGGGCTTGGG
1 ACACGCCTGTGGGGCTTGGG
74998419 ACACGCCTGTGGGGCTTGGG
1 ACACGCCTGTGGGGCTTGGG
*
74998439 ACATGCCTGTG
1 ACACGCCTGTG
74998450 TCCTCAGCCC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.12, C:0.27, G:0.41, T:0.20
Consensus pattern (20 bp):
ACACGCCTGTGGGGCTTGGG
Found at i:75005654 original size:6 final size:6
Alignment explanation
Indices: 75005631--75005752 Score: 70
Period size: 6 Copynumber: 19.8 Consensus size: 6
75005621 TATCAAAACT
* * *
75005631 AGAATC AAAATG AGAATC AGAATC AGAATC AG-GTGAC AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* * * * * * *
75005680 AGAATT AGAATC AAAATT AGGTGAT- AGAATT AGAATC AGAATC GGTATC
1 AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC AGAATC
*
75005729 AGGTAA-C AGAATC AAAATC AGAAT
1 A-G-AATC AGAATC AGAATC AGAAT
75005753 GTGAATGGAA
Statistics
Matches: 87, Mismatches: 20, Indels: 18
0.70 0.16 0.14
Matches are distributed among these distances:
5 5 0.06
6 71 0.82
7 7 0.08
8 4 0.05
ACGTcount: A:0.48, C:0.11, G:0.20, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:75005681 original size:31 final size:31
Alignment explanation
Indices: 75005643--75005752 Score: 103
Period size: 31 Copynumber: 3.4 Consensus size: 31
75005633 AATCAAAATG
75005643 AGAATCAGAATCAGAATCAGGTGACAGAATC
1 AGAATCAGAATCAGAATCAGGTGACAGAATC
* * *
75005674 AGAATCAGAATTAGAATCAAAATTAGGTGATAGAATT
1 AGAATCAGAATCAGAATC------AGGTGACAGAATC
* * *
75005711 AGAATCAGAATCGGTATCAGGTAACAGAATC
1 AGAATCAGAATCAGAATCAGGTGACAGAATC
*
75005742 AAAATCAGAAT
1 AGAATCAGAAT
75005753 GTGAATGGAA
Statistics
Matches: 63, Mismatches: 10, Indels: 12
0.74 0.12 0.14
Matches are distributed among these distances:
31 37 0.59
37 26 0.41
ACGTcount: A:0.47, C:0.12, G:0.20, T:0.21
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGGTGACAGAATC
Found at i:75005684 original size:37 final size:37
Alignment explanation
Indices: 75005631--75005722 Score: 121
Period size: 37 Copynumber: 2.5 Consensus size: 37
75005621 TATCAAAACT
* * *
75005631 AGAATCAAAATGAGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAAAATCAGGTGAC
* * *
75005668 AGAATCAGAATCAGAATTAGAATCAAAATTAGGTGAT
1 AGAATCAGAATCAGAATCAGAATCAAAATCAGGTGAC
*
75005705 AGAATTAGAATCAGAATC
1 AGAATCAGAATCAGAATC
75005723 GGTATCAGGT
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 47 1.00
ACGTcount: A:0.49, C:0.11, G:0.20, T:0.21
Consensus pattern (37 bp):
AGAATCAGAATCAGAATCAGAATCAAAATCAGGTGAC
Found at i:75005752 original size:37 final size:36
Alignment explanation
Indices: 75005631--75005752 Score: 110
Period size: 37 Copynumber: 3.5 Consensus size: 36
75005621 TATCAAAACT
*
75005631 AGAATCAAAATGAGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAAAATCAGAATCAGAATCAGAATCAGGT-AC
* * * *
75005668 AGAATCAGAATCAGAATTAGAATCAAAATTAGGT--
1 AGAATCAAAATCAGAATCAGAATCAGAATCAGGTAC
* * * *
75005702 -G-AT-AGAATTAGAATCAGAATCGGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGAATCAGAATCAGGT-AC
75005736 AGAATCAAAATCAGAAT
1 AGAATCAAAATCAGAAT
75005753 GTGAATGGAA
Statistics
Matches: 66, Mismatches: 13, Indels: 12
0.73 0.14 0.13
Matches are distributed among these distances:
31 22 0.33
32 2 0.03
33 1 0.02
35 1 0.02
36 2 0.03
37 38 0.58
ACGTcount: A:0.48, C:0.11, G:0.20, T:0.20
Consensus pattern (36 bp):
AGAATCAAAATCAGAATCAGAATCAGAATCAGGTAC
Found at i:75006286 original size:27 final size:27
Alignment explanation
Indices: 75006256--75006720 Score: 540
Period size: 27 Copynumber: 17.2 Consensus size: 27
75006246 TAACACCCTA
* * *
75006256 AGGGTAAAATGGTAATTTTATAAATTG
1 AGGGTAAAATAGTAATTTTGTAAATCG
* *
75006283 AGGGTAAAA-CGATAATTTTGTAAATTG
1 AGGGTAAAATAG-TAATTTTGTAAATCG
75006310 AGGGTAAAATAGTAATTTTGTAAATCG
1 AGGGTAAAATAGTAATTTTGTAAATCG
* * *
75006337 ATGGTAAAACAGTAATTCTGTAAATCG
1 AGGGTAAAATAGTAATTTTGTAAATCG
* * *
75006364 AGGGTAAAATAGTAATTCTGTCAATAG
1 AGGGTAAAATAGTAATTTTGTAAATCG
* **
75006391 AGGGTAAAATGGTAATTTTGTAAATAA
1 AGGGTAAAATAGTAATTTTGTAAATCG
*
75006418 AGGGTAAAATGGTAATTTTGTAAATCG
1 AGGGTAAAATAGTAATTTTGTAAATCG
** * *
75006445 AGGGTAAAACGGTAATTCTGTAAATAG
1 AGGGTAAAATAGTAATTTTGTAAATCG
* *
75006472 AGGGTAAAATAATAATTTTGTGAATCG
1 AGGGTAAAATAGTAATTTTGTAAATCG
* * * * *
75006499 ATGGTAAAACAGTAATTCTATCAATCG
1 AGGGTAAAATAGTAATTTTGTAAATCG
* * *
75006526 AGGTTAAAATAGTAACTCTGTAAATCG
1 AGGGTAAAATAGTAATTTTGTAAATCG
*
75006553 AGGGTAAAATAGTAATTCTGTAAATCG
1 AGGGTAAAATAGTAATTTTGTAAATCG
* *
75006580 AAGGTAAAACAGTAATTTTGTAAATCG
1 AGGGTAAAATAGTAATTTTGTAAATCG
*
75006607 AGGGTAAAA-CGATAATTTTGTAAATCG
1 AGGGTAAAATAG-TAATTTTGTAAATCG
* *
75006634 AGGGTAAAA-CGATAATTTTATAAATCG
1 AGGGTAAAATAG-TAATTTTGTAAATCG
75006661 AGGGTAAAATAGTAATTTTGTAAATCG
1 AGGGTAAAATAGTAATTTTGTAAATCG
* * *
75006688 AGGGTAAAACAGTAATTTTATAATTCG
1 AGGGTAAAATAGTAATTTTGTAAATCG
75006715 AGGGTA
1 AGGGTA
75006721 CTTTGATAAT
Statistics
Matches: 383, Mismatches: 51, Indels: 8
0.87 0.12 0.02
Matches are distributed among these distances:
26 2 0.01
27 379 0.99
28 2 0.01
ACGTcount: A:0.41, C:0.06, G:0.22, T:0.31
Consensus pattern (27 bp):
AGGGTAAAATAGTAATTTTGTAAATCG
Found at i:75006743 original size:54 final size:54
Alignment explanation
Indices: 75006256--75006845 Score: 233
Period size: 54 Copynumber: 10.9 Consensus size: 54
75006246 TAACACCCTA
** * *** ** *
75006256 AGGGTAAAATGGTAATTTTATAAATTGAGGGTAAAACGATAATTTTGTAAATTG
1 AGGGTAAAACAGTAATTTTATAAATCGAGGGTAATTTGATAATTTTACAAATCG
* * * *** * **
75006310 AGGGTAAAATAGTAATTTTGTAAATCGATGGTAA-AACAGTAATTCTGTAAATCG
1 AGGGTAAAACAGTAATTTTATAAATCGAGGGTAATTTGA-TAATTTTACAAATCG
* * * * * ** * ** **
75006364 AGGGTAAAATAGTAATTCTGTCAATAGAGGGTAAAATGGTAATTTTGTAAATAA
1 AGGGTAAAACAGTAATTTTATAAATCGAGGGTAATTTGATAATTTTACAAATCG
** * *** * * ** *
75006418 AGGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATAG
1 AGGGTAAAACAGTAATTTTATAAATCGAGGGTAATTTGATAATTTTACAAATCG
* * * * * *** *
75006472 AGGGTAAAATAATAATTTTGTGAATCGATGGTAA-AACAGTAATTCTATC-AATCG
1 AGGGTAAAACAGTAATTTTATAAATCGAGGGTAATTTGA-TAATTTTA-CAAATCG
* * * * * ** * **
75006526 AGGTTAAAATAGTAACTCTGTAAATCGAGGGTAAAAT-AGTAATTCTGTAAATCG
1 AGGGTAAAACAGTAATTTTATAAATCGAGGGTAATTTGA-TAATTTTACAAATCG
* * *** **
75006580 AAGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAACGATAATTTTGTAAATCG
1 AGGGTAAAACAGTAATTTTATAAATCGAGGGTAATTTGATAATTTTACAAATCG
** **
75006634 AGGGTAAAAC-GATAATTTTATAAATCGAGGGTAAAAT-AGTAATTTTGTAAATCG
1 AGGGTAAAACAG-TAATTTTATAAATCGAGGGTAATTTGA-TAATTTTACAAATCG
* * **
75006688 AGGGTAAAACAGTAATTTTATAATTCGAGGGTACTTTGATAATTTTACATGTCG
1 AGGGTAAAACAGTAATTTTATAAATCGAGGGTAATTTGATAATTTTACAAATCG
*** ** * *
75006742 AGGGTATTTCAGTAATTTTGCAAA-CTGAGGGT-ATTTCGGTAATTTTACAAGTCG
1 AGGGTAAAACAGTAATTTTATAAATC-GAGGGTAATTT-GATAATTTTACAAATCG
* ***** * * *
75006796 AGGATATCTGGGTAATTTTATAAACCGAGGGTACTTTGGTAATTTTACAA
1 AGGGTAAAACAGTAATTTTATAAATCGAGGGTAATTTGATAATTTTACAA
75006846 CTGGGGGTAT
Statistics
Matches: 443, Mismatches: 78, Indels: 30
0.80 0.14 0.05
Matches are distributed among these distances:
53 9 0.02
54 425 0.96
55 9 0.02
ACGTcount: A:0.38, C:0.07, G:0.22, T:0.33
Consensus pattern (54 bp):
AGGGTAAAACAGTAATTTTATAAATCGAGGGTAATTTGATAATTTTACAAATCG
Found at i:75006743 original size:81 final size:81
Alignment explanation
Indices: 75006256--75006774 Score: 517
Period size: 81 Copynumber: 6.4 Consensus size: 81
75006246 TAACACCCTA
** * * * *
75006256 AGGGTAAAATGGTAATTTTATAAATTGAGGGTAAAAC-GATAATTTTGTAAATTGAGGGTAAAAT
1 AGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAACAG-TAATTCTGTAAATCGAGGGTAAAAT
*
75006320 -AGTAATTTTGTAAATCG
65 GA-TAATTTTATAAATCG
* * * * *
75006337 ATGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTCAATAGAGGGTAAAATG
1 AGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATG
* * **
75006402 GTAATTTTGTAAATAA
66 ATAATTTTATAAATCG
** * * *
75006418 AGGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATAGAGGGTAAAATA
1 AGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATG
* *
75006483 ATAATTTTGTGAATCG
66 ATAATTTTATAAATCG
* * * * * * *
75006499 ATGGTAAAACAGTAATTCTATCAATCGAGGTTAAAATAGTAACTCTGTAAATCGAGGGTAAAAT-
1 AGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATG
* *
75006563 AGTAATTCTGTAAATCG
66 A-TAATTTTATAAATCG
* * *
75006580 AAGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAAC-GATAATTTTGTAAATCGAGGGTAAAAC
1 AGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAACAG-TAATTCTGTAAATCGAGGGTAAAAT
75006644 GATAATTTTATAAATCG
65 GATAATTTTATAAATCG
* * * * ***
75006661 AGGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTTTATAATTCGAGGGTACTTTG
1 AGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATG
* **
75006726 ATAATTTTACATGTCG
66 ATAATTTTATAAATCG
*** *
75006742 AGGGTATTTCAGTAATTTTGCAAA-CTGAGGGTA
1 AGGGTAAAACAGTAATTTTGTAAATC-GAGGGTA
75006775 TTTCGGTAAT
Statistics
Matches: 366, Mismatches: 65, Indels: 14
0.82 0.15 0.03
Matches are distributed among these distances:
80 3 0.01
81 360 0.98
82 3 0.01
ACGTcount: A:0.40, C:0.07, G:0.22, T:0.32
Consensus pattern (81 bp):
AGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATG
ATAATTTTATAAATCG
Found at i:75006863 original size:26 final size:26
Alignment explanation
Indices: 75006699--75006863 Score: 118
Period size: 27 Copynumber: 6.2 Consensus size: 26
75006689 GGGTAAAACA
* *
75006699 GTAATTTTATAATTCGAGGGTACTTT-G
1 GTAATTTTACAACT-GAGGGTA-TTTCG
* ** *
75006726 ATAATTTTACATGTCGAGGGTATTTCA
1 GTAATTTTACAACT-GAGGGTATTTCG
*
75006753 GTAATTTTGCAAACTGAGGGTATTTCG
1 GTAATTTTAC-AACTGAGGGTATTTCG
* * * *
75006780 GTAATTTTACAAGTCGAGGATATCTGG
1 GTAATTTTACAACT-GAGGGTATTTCG
* *
75006807 GTAATTTTATAAACCGAGGGTACTTT-G
1 GTAATTTTA-CAACTGAGGGTA-TTTCG
* *
75006834 GTAATTTTACAACTGGGGGTATTTCA
1 GTAATTTTACAACTGAGGGTATTTCG
75006860 GTAA
1 GTAA
75006864 GTTGGGAAAC
Statistics
Matches: 108, Mismatches: 24, Indels: 13
0.74 0.17 0.09
Matches are distributed among these distances:
25 3 0.03
26 19 0.18
27 80 0.74
28 6 0.06
ACGTcount: A:0.28, C:0.10, G:0.23, T:0.38
Consensus pattern (26 bp):
GTAATTTTACAACTGAGGGTATTTCG
Found at i:75010486 original size:27 final size:27
Alignment explanation
Indices: 75010423--75010486 Score: 67
Period size: 27 Copynumber: 2.4 Consensus size: 27
75010413 TACCAGAAAC
* *
75010423 AGTGAATGTGGTAAAGCCACCAGTATA
1 AGTGAATGTGGCAAAGCCACAAGTATA
* * *
75010450 AAT-AATTGTGGCATAGCCACAAGTATT
1 AGTGAA-TGTGGCAAAGCCACAAGTATA
75010477 AGTGAATGTG
1 AGTGAATGTG
75010487 ATATAGTCAC
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
26 2 0.07
27 25 0.86
28 2 0.07
ACGTcount: A:0.36, C:0.12, G:0.25, T:0.27
Consensus pattern (27 bp):
AGTGAATGTGGCAAAGCCACAAGTATA
Found at i:75010673 original size:27 final size:27
Alignment explanation
Indices: 75010643--75010784 Score: 178
Period size: 27 Copynumber: 5.3 Consensus size: 27
75010633 GGGCATACTC
75010643 GTCATTTTACCCTACAGGGGCATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
* *
75010670 GTCATTTTATCCTACAGGGGCATTACA
1 GTCATTTTACCCTACAGGGGCATTACG
*
75010697 GTCATTTTACCTTA-AGGGGGCATTACG
1 GTCATTTTACCCTACA-GGGGCATTACG
* *
75010724 GTTATTTTACCCTACGGGGGCATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
* * * *
75010751 GTTATTTTACCCCACAAGGGTATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
*
75010778 GCCATTT
1 GTCATTT
75010785 CCATCCATTA
Statistics
Matches: 99, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
26 1 0.01
27 98 0.99
ACGTcount: A:0.23, C:0.23, G:0.22, T:0.33
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGCATTACG
Found at i:75011218 original size:9 final size:9
Alignment explanation
Indices: 75011206--75011230 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
75011196 TGGCCCCACG
75011206 GGCCCATTA
1 GGCCCATTA
75011215 GGCCCATTA
1 GGCCCATTA
75011224 GGCCCAT
1 GGCCCAT
75011231 CGAGGCCCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.20, C:0.36, G:0.24, T:0.20
Consensus pattern (9 bp):
GGCCCATTA
Found at i:75013397 original size:40 final size:40
Alignment explanation
Indices: 75013342--75013489 Score: 235
Period size: 40 Copynumber: 3.7 Consensus size: 40
75013332 TGAATGATAC
* * *
75013342 CCGGGCTAAGCCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
75013382 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
*
75013422 CCGGGCTAAGACCCGAAGGCATTTGTACGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
*
75013462 CCGGGCTAAGACCCGAAGGCAATTGTGC
1 CCGGGCTAAGACCCGAAGGCATTTGTGC
75013490 TTGTGGTTGT
Statistics
Matches: 101, Mismatches: 6, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
40 99 0.98
41 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:75013503 original size:40 final size:40
Alignment explanation
Indices: 75013342--75013509 Score: 230
Period size: 40 Copynumber: 4.2 Consensus size: 40
75013332 TGAATGATAC
* * * *
75013342 CCGGGCTAAGCCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGGTTATAT
*
75013382 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGGTTATAT
* *
75013422 CCGGGCTAAGACCCGAAGGCATTTGTACGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGGTTATAT
* ** *
75013462 CCGGGCTAAGACCCGAAGGCAATTGTGCTTGTGGTTGTAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGGTTATAT
75013502 CC-GGCTAA
1 CCGGGCTAA
75013510 ATTCCGAAGA
Statistics
Matches: 116, Mismatches: 12, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 6 0.05
40 110 0.95
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGGTTATAT
Found at i:75022565 original size:29 final size:29
Alignment explanation
Indices: 75022532--75022605 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
75022522 GTGACGAGAT
75022532 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
75022561 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
75022590 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
75022606 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:75022621 original size:29 final size:28
Alignment explanation
Indices: 75022589--75022663 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
75022579 CTGGAAATAT
* *
75022589 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCT-AAAGCGC
** * *
75022618 ATGGCACTGTGTGTGCGGGCTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTAAAGCGC
75022646 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
75022664 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
28 19 0.51
29 18 0.49
ACGTcount: A:0.23, C:0.20, G:0.36, T:0.21
Consensus pattern (28 bp):
ATGGCACTAAGTGTGCGAGCTAAAGCGC
Found at i:75022632 original size:58 final size:57
Alignment explanation
Indices: 75022532--75022663 Score: 131
Period size: 58 Copynumber: 2.3 Consensus size: 57
75022522 GTGACGAGAT
* * * * * *
75022532 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT--AAATCACA
* * ** * *
75022590 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTAAATCACA
75022647 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
75022664 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
56 4 0.07
57 18 0.30
58 39 0.64
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.24
Consensus pattern (57 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTAAATCACA
Found at i:75030464 original size:27 final size:29
Alignment explanation
Indices: 75030400--75030470 Score: 119
Period size: 29 Copynumber: 2.5 Consensus size: 29
75030390 GTGACGAGAT
*
75030400 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
75030429 TGGCACTAAGTGTGCATGCTGG-AA-ATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
75030456 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
75030471 GAGCTCGAAG
Statistics
Matches: 41, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
27 18 0.44
28 2 0.05
29 21 0.51
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:75038654 original size:28 final size:28
Alignment explanation
Indices: 75038589--75038687 Score: 101
Period size: 28 Copynumber: 3.5 Consensus size: 28
75038579 ATAGTGAATC
*** *
75038589 CGCACACTTAGTGCTATATTTTC-AGCT
1 CGCACACTTAGTGCTATACAATCAAACT
*
75038616 CGCACACTTAGTGCTATAGAATCAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
* * *
75038644 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATACAA--TCAAACT
75038674 CGCACACTTAGTGC
1 CGCACACTTAGTGC
75038688 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 20 0.33
28 22 0.36
30 19 0.31
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:75042139 original size:31 final size:31
Alignment explanation
Indices: 75042098--75042169 Score: 126
Period size: 31 Copynumber: 2.3 Consensus size: 31
75042088 GGGCATCAAA
* *
75042098 TATTCGTATTTAACTTATTATACATTGCAAT
1 TATTCATATTTAACTTATCATACATTGCAAT
75042129 TATTCATATTTAACTTATCATACATTGCAAT
1 TATTCATATTTAACTTATCATACATTGCAAT
75042160 TATTCATATT
1 TATTCATATT
75042170 CACATATCAC
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.33, C:0.14, G:0.04, T:0.49
Consensus pattern (31 bp):
TATTCATATTTAACTTATCATACATTGCAAT
Found at i:75043354 original size:16 final size:16
Alignment explanation
Indices: 75043335--75043382 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 16
75043325 TAAGTATAAG
75043335 ATATTTAATATATATA
1 ATATTTAATATATATA
*
75043351 ATATATTATTAT-TAT-
1 ATAT-TTAATATATATA
75043366 A-ATTTAATA-ATATA
1 ATATTTAATATATATA
75043380 ATA
1 ATA
75043383 AGATATAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 9
0.70 0.05 0.24
Matches are distributed among these distances:
13 8 0.31
14 3 0.12
15 2 0.08
16 7 0.27
17 6 0.23
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
ATATTTAATATATATA
Found at i:75043409 original size:23 final size:23
Alignment explanation
Indices: 75043363--75043410 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
75043353 ATATTATTAT
* *
75043363 TATAATTTAATAATATAATAAGA
1 TATAATATAATAATAAAATAAGA
75043386 TATAATATAATAAGTAAAAT-AGA
1 TATAATATAATAA-TAAAATAAGA
75043409 TA
1 TA
75043411 AAAGAAAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 17 0.77
24 5 0.23
ACGTcount: A:0.58, C:0.00, G:0.06, T:0.35
Consensus pattern (23 bp):
TATAATATAATAATAAAATAAGA
Found at i:75043832 original size:22 final size:22
Alignment explanation
Indices: 75043786--75043841 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
75043776 CGGGATGCTG
* ** *
75043786 ACATGGGCGTGTCATATCTGGC
1 ACATGGGCGTGTCACATAAGCC
75043808 ACATGGGCGTGTCACATAAGCC
1 ACATGGGCGTGTCACATAAGCC
*
75043830 ACACGGGCGTGT
1 ACATGGGCGTGT
75043842 GGTACTATTC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.21, C:0.25, G:0.32, T:0.21
Consensus pattern (22 bp):
ACATGGGCGTGTCACATAAGCC
Found at i:75048151 original size:8 final size:8
Alignment explanation
Indices: 75048127--75048189 Score: 58
Period size: 8 Copynumber: 8.0 Consensus size: 8
75048117 GTAATATATG
*
75048127 TAATATAT
1 TAATATAA
*
75048135 TATTATAA
1 TAATATAA
*
75048143 TAATTTAA
1 TAATATAA
75048151 TAATATAA
1 TAATATAA
*
75048159 TAAGAT-A
1 TAATATAA
75048166 TAATATAA
1 TAATATAA
*
75048174 TAAGTAAAA
1 TAA-TATAA
75048183 TAA-ATAA
1 TAATATAA
75048190 AAGAAAATAA
Statistics
Matches: 44, Mismatches: 9, Indels: 5
0.76 0.16 0.09
Matches are distributed among these distances:
7 9 0.20
8 28 0.64
9 7 0.16
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (8 bp):
TAATATAA
Found at i:75048185 original size:12 final size:15
Alignment explanation
Indices: 75048150--75048189 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
75048140 TAATAATTTA
75048150 ATAATATAATAAGAT
1 ATAATATAATAAGAT
75048165 ATAATATAATAAG-T
1 ATAATATAATAAGAT
*
75048179 AAAATA-AATAA
1 ATAATATAATAA
75048190 AAGAAAATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
13 5 0.21
14 6 0.25
15 13 0.54
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (15 bp):
ATAATATAATAAGAT
Found at i:75048259 original size:14 final size:14
Alignment explanation
Indices: 75048228--75048269 Score: 59
Period size: 14 Copynumber: 2.9 Consensus size: 14
75048218 AGAACAGAGC
75048228 AAGAAACGAAATAGGA
1 AAGAAA-GAAA-AGGA
75048244 AAGAAAGAAAAGGA
1 AAGAAAGAAAAGGA
75048258 AAGAAA-AAAAGG
1 AAGAAAGAAAAGG
75048270 GGAAATTAGG
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
13 6 0.23
14 10 0.38
15 4 0.15
16 6 0.23
ACGTcount: A:0.69, C:0.02, G:0.26, T:0.02
Consensus pattern (14 bp):
AAGAAAGAAAAGGA
Found at i:75049060 original size:18 final size:18
Alignment explanation
Indices: 75049037--75049084 Score: 87
Period size: 18 Copynumber: 2.7 Consensus size: 18
75049027 ATTCACATAT
75049037 TTTCTCTCTTCTCTCCAC
1 TTTCTCTCTTCTCTCCAC
*
75049055 TTTCTCTTTTCTCTCCAC
1 TTTCTCTCTTCTCTCCAC
75049073 TTTCTCTCTTCT
1 TTTCTCTCTTCT
75049085 TTGCCATTCT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.04, C:0.40, G:0.00, T:0.56
Consensus pattern (18 bp):
TTTCTCTCTTCTCTCCAC
Found at i:75055251 original size:206 final size:206
Alignment explanation
Indices: 75054891--75055300 Score: 703
Period size: 206 Copynumber: 2.0 Consensus size: 206
75054881 ATATTAGTAG
* *
75054891 CAGTAAACTATGTGTCTAAGTGGGTTGAGGCAGAGGCATATCTAACAAACGATGCTAAGGTTGTG
1 CAGTAAACTATGTGTCTAAATGGGTTGAGGCAGAGGCATATCCAACAAACGATGCTAAGGTTGTG
* * *
75054956 ATGAAGTTTTTACAAAACCATGTGTTCATAAGGTTTAGAACCCCAAGAGCCATCATCAGTGATGA
66 ATGAAGGTTTTACAAAACCATGTGTTCACAAGGTTTAGAACCCCAAGAGCCATCATCAGTGATAA
*
75055021 AGGGTCCCATTTTGTGAACAAATGGTTACTTGACAAACATGGAGTCAAGCACAAGGTCGCCACAG
131 AGGGTCCCATTTTGTGAACAAATGGTTACTTGACAAACATAGAGTCAAGCACAAGGTCGCCACAG
75055086 CTTACCATCCA
196 CTTACCATCCA
* * * *
75055097 CAGTAGACTATGTGTCTAAATGGGTTGCGGCAGAGGCATATCCGACAAACGATGTTAAGGTTGTG
1 CAGTAAACTATGTGTCTAAATGGGTTGAGGCAGAGGCATATCCAACAAACGATGCTAAGGTTGTG
* * *
75055162 ATGAAGGTTTTACAGAAGCATGTGTTCACAAGGTTTAGAACCTCAAGAGCCATCATCAGTGATAA
66 ATGAAGGTTTTACAAAACCATGTGTTCACAAGGTTTAGAACCCCAAGAGCCATCATCAGTGATAA
75055227 AGGGTCCCATTTTGTGAACAAATGGTTACTTGACAAACATAGAGTCAAGCACAAGGTCGCCACAG
131 AGGGTCCCATTTTGTGAACAAATGGTTACTTGACAAACATAGAGTCAAGCACAAGGTCGCCACAG
75055292 CTTACCATC
196 CTTACCATC
75055301 GTTAGACGAA
Statistics
Matches: 191, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
206 191 1.00
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.25
Consensus pattern (206 bp):
CAGTAAACTATGTGTCTAAATGGGTTGAGGCAGAGGCATATCCAACAAACGATGCTAAGGTTGTG
ATGAAGGTTTTACAAAACCATGTGTTCACAAGGTTTAGAACCCCAAGAGCCATCATCAGTGATAA
AGGGTCCCATTTTGTGAACAAATGGTTACTTGACAAACATAGAGTCAAGCACAAGGTCGCCACAG
CTTACCATCCA
Found at i:75057969 original size:22 final size:22
Alignment explanation
Indices: 75057926--75057969 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
75057916 TTATCTTCAT
* *
75057926 TTTATTATATATTATTTTATTA
1 TTTATTATATATTATATAATTA
75057948 TTTATTAGTATA-TATATAATTA
1 TTTATTA-TATATTATATAATTA
75057970 AAATTTGTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (22 bp):
TTTATTATATATTATATAATTA
Found at i:75058448 original size:60 final size:64
Alignment explanation
Indices: 75058392--75058516 Score: 152
Period size: 64 Copynumber: 2.0 Consensus size: 64
75058382 TTATATTATT
* * *
75058392 TTAAGTTATA-TTTGTAT-A-AAAT-ATTAT-TATATATTATGTAATTTATATTGTTATATTCA
1 TTAAGCTATATTTTGTATGACAAATAATTATGTATATATTATGCAATCTATATTGTTATATTCA
* * * *
75058451 TTATGCTATATTTTGTATGACATATAATTATGTATGTATTATGCAATCTATATTGTTATGTTCA
1 TTAAGCTATATTTTGTATGACAAATAATTATGTATATATTATGCAATCTATATTGTTATATTCA
75058515 TT
1 TT
75058517 GTTTTCTGTG
Statistics
Matches: 54, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
59 8 0.15
60 7 0.13
61 1 0.02
62 3 0.06
63 5 0.09
64 30 0.56
ACGTcount: A:0.33, C:0.05, G:0.10, T:0.53
Consensus pattern (64 bp):
TTAAGCTATATTTTGTATGACAAATAATTATGTATATATTATGCAATCTATATTGTTATATTCA
Found at i:75061152 original size:40 final size:40
Alignment explanation
Indices: 75061074--75061296 Score: 256
Period size: 40 Copynumber: 5.5 Consensus size: 40
75061064 ACCCAAGTAT
* * *
75061074 CTTCGGGATTTAG-CCGGATATAG-CAACTCGTACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * **
75061113 CTTCGGGTCTTAGCTCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
75061153 CTTCGGGACCTAGCCCGGATATAGTCACTAGCACAATTGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
75061193 CTTCGGGACTTAGCCCGG-TATAG-CAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
* * *
75061235 CTTCGGGACTTAGCCCGAATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
75061275 CTTCGGGACTTAGCCCAGATAT
1 CTTCGGGACTTAGCCCGGATAT
75061297 CATCCGAATA
Statistics
Matches: 156, Mismatches: 20, Indels: 15
0.82 0.10 0.08
Matches are distributed among these distances:
38 1 0.01
39 20 0.13
40 100 0.64
41 1 0.01
42 26 0.17
43 8 0.05
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:75061289 original size:122 final size:119
Alignment explanation
Indices: 75061074--75061296 Score: 304
Period size: 122 Copynumber: 1.8 Consensus size: 119
75061064 ACCCAAGTAT
* * * * * *
75061074 CTTCGGGATTTAGCCGGATATAGCAACTCGTACAAATGCCTTCGGGTCTTAGCTCGGATATAGTC
1 CTTCGGGACTTAGCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGAATATAGTA
** *
75061139 ACTAGCATGAATGCCTTCGGGACCTAGCCCGGATATAGTCACTAGCACAATTGC
66 ACTAGCACAAATGCCTTCGGGACCTAGCCCAGATATAGTCACTAGCACAATTGC
75061193 CTTCGGGACTTAGCCCGG-TATAGCAACTACTCGCACAAATGCCTTCGGGACTTAGCCCGAATAT
1 CTTCGGGACTTAG-CCGGATATAGC-A--ACTCGCACAAATGCCTTCGGGACTTAGCCCGAATAT
* *
75061257 AGTAACTTGCACAAATGCCTTCGGGACTTAGCCCAGATAT
62 AGTAACTAGCACAAATGCCTTCGGGACCTAGCCCAGATAT
75061297 CATCCGAATA
Statistics
Matches: 89, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
119 18 0.20
120 5 0.06
122 66 0.74
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (119 bp):
CTTCGGGACTTAGCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGAATATAGTA
ACTAGCACAAATGCCTTCGGGACCTAGCCCAGATATAGTCACTAGCACAATTGC
Found at i:75065053 original size:29 final size:29
Alignment explanation
Indices: 75065014--75065093 Score: 108
Period size: 29 Copynumber: 2.7 Consensus size: 29
75065004 CTTAATAATC
*
75065014 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
75065044 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
75065073 AGCCCGCACACTTAGTGCCAT
1 AACCCGCACACTTAGTGCCAT
75065094 TCTCTCAACC
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 39 0.87
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.25
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:75072920 original size:29 final size:29
Alignment explanation
Indices: 75072881--75072960 Score: 108
Period size: 29 Copynumber: 2.7 Consensus size: 29
75072871 GCATATAATC
*
75072881 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
75072911 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
75072940 AGCCCGCACACTTAGTGCCAT
1 AACCCGCACACTTAGTGCCAT
75072961 ATCTCTCAAC
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 39 0.87
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.25
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:75072969 original size:29 final size:28
Alignment explanation
Indices: 75072859--75072969 Score: 93
Period size: 29 Copynumber: 3.9 Consensus size: 28
75072849 TATGTGGGTT
* **
75072859 CGCACACATAGTG-CATATAATC-AACC
1 CGCACACTTAGTGCCATATCTTCAAACC
* * *
75072885 ACGCACACTTAGTGCCATGTACTTTAAACT
1 -CGCACACTTAGTGCCATAT-CTTCAAACC
*
75072915 CGCACACTTAGTGCCATGCAT-TTCAAGCC
1 CGCACACTTAGTGCCAT--ATCTTCAAACC
75072944 CGCACACTTAGTGCCATATCTCTCAA
1 CGCACACTTAGTGCCATATCT-TCAA
75072970 CCGTGAACAC
Statistics
Matches: 67, Mismatches: 10, Indels: 12
0.75 0.11 0.13
Matches are distributed among these distances:
27 14 0.21
28 5 0.07
29 44 0.66
30 3 0.04
31 1 0.01
ACGTcount: A:0.30, C:0.32, G:0.14, T:0.25
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATCTTCAAACC
Found at i:75080198 original size:40 final size:37
Alignment explanation
Indices: 75080147--75080251 Score: 129
Period size: 40 Copynumber: 2.7 Consensus size: 37
75080137 TATATCTACT
*
75080147 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATA-AA-AACTA
* *
75080187 GCACGAATGCCTTCGGGCCTTAGCCCGGATATAAACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAAAAACTA
*
75080225 GCACAATTGCCTTCGGGTCTTAACCCG
1 GCACAA-TGCCTTCGGGTCTTAGCCCG
75080252 AACTTAGATA
Statistics
Matches: 58, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
37 2 0.03
38 26 0.45
39 1 0.02
40 29 0.50
ACGTcount: A:0.25, C:0.30, G:0.23, T:0.23
Consensus pattern (37 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAAAAACTA
Found at i:75086857 original size:40 final size:40
Alignment explanation
Indices: 75086812--75086978 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
75086802 CGGAATATAA
75086812 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
75086852 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
75086892 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
75086932 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
75086971 CCGGATAT
1 CCGGATAT
75086979 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:75086962 original size:80 final size:79
Alignment explanation
Indices: 75086812--75086978 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
75086802 CGGAATATAA
* *
75086812 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
75086877 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
75086892 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
75086954 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
75086971 CCGGATAT
1 CCGGATAT
75086979 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:75087827 original size:17 final size:19
Alignment explanation
Indices: 75087804--75087849 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
75087794 AAGAAGCATG
75087804 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
75087822 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
75087840 AATCATGCTC
1 AATCATGCTC
75087850 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:75094864 original size:40 final size:40
Alignment explanation
Indices: 75094819--75094985 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
75094809 CGGAATATAA
75094819 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
75094859 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
75094899 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
75094939 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
75094978 CCGGATAT
1 CCGGATAT
75094986 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Done.