Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 240 of 318
Found at i:75486584 original size:10 final size:10
Alignment explanation
Indices: 75486569--75486623 Score: 65
Period size: 10 Copynumber: 5.4 Consensus size: 10
75486559 TTTTGATATA
75486569 ATATGACATG
1 ATATGACATG
75486579 ATATGACATG
1 ATATGACATG
*
75486589 TTATGACATG
1 ATATGACATG
**
75486599 ATATGTTATG
1 ATATGACATG
*
75486609 AGATGCACATG
1 ATATG-ACATG
75486620 ATAT
1 ATAT
75486624 ACCTATTATA
Statistics
Matches: 36, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
10 30 0.83
11 6 0.17
ACGTcount: A:0.36, C:0.09, G:0.20, T:0.35
Consensus pattern (10 bp):
ATATGACATG
Found at i:75486594 original size:15 final size:15
Alignment explanation
Indices: 75486576--75486619 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
75486566 ATAATATGAC
*
75486576 ATGATATGACATGTT
1 ATGACATGACATGTT
*
75486591 ATGACATGATATGTT
1 ATGACATGACATGTT
*
75486606 ATGAGATGCACATG
1 ATGACATG-ACATG
75486620 ATATACCTAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
15 20 0.83
16 4 0.17
ACGTcount: A:0.34, C:0.09, G:0.23, T:0.34
Consensus pattern (15 bp):
ATGACATGACATGTT
Found at i:75495718 original size:27 final size:27
Alignment explanation
Indices: 75495683--75495738 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
75495673 TAATCTATCT
75495683 TTAAAAATTATAAAAAAC-TATAAAAA
1 TTAAAAATTATAAAAAACTTATAAAAA
* *
75495709 TTAAATAATTATATAAAACTTATTAAAA
1 TTAAA-AATTATAAAAAACTTATAAAAA
75495737 TT
1 TT
75495739 TTAAAAGGAG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
26 5 0.19
27 12 0.46
28 9 0.35
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.36
Consensus pattern (27 bp):
TTAAAAATTATAAAAAACTTATAAAAA
Found at i:75495791 original size:16 final size:17
Alignment explanation
Indices: 75495760--75495806 Score: 51
Period size: 18 Copynumber: 2.7 Consensus size: 17
75495750 AGCATTTAAT
*
75495760 AATTTCTATAAATTTTC-
1 AATTTTTAT-AATTTTCA
*
75495777 TATTTTTATAATTTTCAA
1 AATTTTTATAATTTTC-A
75495795 AATTTTTATAAT
1 AATTTTTATAAT
75495807 AAATTTATAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
16 7 0.28
17 7 0.28
18 11 0.44
ACGTcount: A:0.36, C:0.06, G:0.00, T:0.57
Consensus pattern (17 bp):
AATTTTTATAATTTTCA
Found at i:75496130 original size:9 final size:9
Alignment explanation
Indices: 75496100--75496168 Score: 50
Period size: 9 Copynumber: 7.1 Consensus size: 9
75496090 AAAATAACTA
75496100 AATTTTCTAT
1 AATTTT-TAT
75496110 -ATTTTTAAAT
1 AATTTTT--AT
75496120 AATTTTTAT
1 AATTTTTAT
*
75496129 AAATTTTTCT
1 -AATTTTTAT
75496139 AATTTATTTAT
1 AA-TT-TTTAT
* *
75496150 CATTTTTCT
1 AATTTTTAT
75496159 AATTTTTAT
1 AATTTTTAT
75496168 A
1 A
75496169 TAACTTTCTA
Statistics
Matches: 47, Mismatches: 6, Indels: 13
0.71 0.09 0.20
Matches are distributed among these distances:
8 1 0.02
9 21 0.45
10 14 0.30
11 11 0.23
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.62
Consensus pattern (9 bp):
AATTTTTAT
Found at i:75496133 original size:10 final size:10
Alignment explanation
Indices: 75496098--75496186 Score: 51
Period size: 10 Copynumber: 8.8 Consensus size: 10
75496088 TCAAAATAAC
75496098 TAAATTTTCTA
1 TAAATTTT-TA
75496109 T--ATTTTTA
1 TAAATTTTTA
*
75496117 AATAATTTTTA
1 TA-AATTTTTA
*
75496128 TAAATTTTTC
1 TAAATTTTTA
*
75496138 TAATTTATTTA
1 TAAATT-TTTA
* *
75496149 T-CATTTTTC
1 TAAATTTTTA
75496158 T-AATTTTTA
1 TAAATTTTTA
*
75496167 TATAACTTTCTA
1 TA-AA-TTTTTA
75496179 TAAATTTT
1 TAAATTTT
75496187 AATACTTTTA
Statistics
Matches: 59, Mismatches: 12, Indels: 15
0.69 0.14 0.17
Matches are distributed among these distances:
8 2 0.03
9 16 0.27
10 17 0.29
11 17 0.29
12 7 0.12
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.61
Consensus pattern (10 bp):
TAAATTTTTA
Found at i:75496381 original size:20 final size:18
Alignment explanation
Indices: 75496353--75496408 Score: 60
Period size: 17 Copynumber: 3.1 Consensus size: 18
75496343 ATTGAAATTG
* *
75496353 TTTTAATAATTTTTATAGT
1 TTTTCATAATTTTTATA-A
*
75496372 TTTTCTATAACTTTTATAA
1 TTTTC-ATAATTTTTATAA
75496391 TTTTCA-AATTTTTATAA
1 TTTTCATAATTTTTATAA
75496408 T
1 T
75496409 ATTTATTTAT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
17 11 0.34
18 1 0.03
19 9 0.28
20 11 0.34
ACGTcount: A:0.32, C:0.05, G:0.02, T:0.61
Consensus pattern (18 bp):
TTTTCATAATTTTTATAA
Found at i:75498462 original size:43 final size:43
Alignment explanation
Indices: 75498444--75498550 Score: 178
Period size: 43 Copynumber: 2.5 Consensus size: 43
75498434 TAATCGATTT
75498444 CATATAAGACCCTATCTGGGACAATGCCATCGATATACGATAA
1 CATATAAGACCCTATCTGGGACAATGCCATCGATATACGATAA
*
75498487 CATGTAAGACCCTATCTGGGACAATGCCATCGATATACGATAA
1 CATATAAGACCCTATCTGGGACAATGCCATCGATATACGATAA
* * *
75498530 CATGTAAGACCATATTTGGGA
1 CATATAAGACCCTATCTGGGA
75498551 TATGGCATTG
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 61 1.00
ACGTcount: A:0.36, C:0.21, G:0.19, T:0.24
Consensus pattern (43 bp):
CATATAAGACCCTATCTGGGACAATGCCATCGATATACGATAA
Found at i:75502020 original size:38 final size:38
Alignment explanation
Indices: 75501973--75502052 Score: 115
Period size: 38 Copynumber: 2.1 Consensus size: 38
75501963 GATGTGTATT
* * *
75501973 CGGGTTAAATCCCGCAGGCTTCGTGATGGTATTATATC
1 CGGGATAAATCCCGCAGGCCTAGTGATGGTATTATATC
* *
75502011 CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATT
1 CGGGATAAATCCCGCAGGCCTAGTGATGGTATTATATC
75502049 CGGG
1 CGGG
75502053 CCTTCATGCC
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (38 bp):
CGGGATAAATCCCGCAGGCCTAGTGATGGTATTATATC
Found at i:75502099 original size:43 final size:43
Alignment explanation
Indices: 75502024--75502169 Score: 190
Period size: 43 Copynumber: 3.4 Consensus size: 43
75502014 GATAAATCCC
* * * *
75502024 GCAGGCCTAGTGCTGGT-AT-TATATTCGGGCCTTCATGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
75502065 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* * *
75502108 GCAGGCTTCGTGCCTGTTATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
*
75502151 GCAGG-TGTAATGCCGGTGA
1 GCAGGCT-TAGTGCCGGTGA
75502170 AATGATATGT
Statistics
Matches: 91, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
41 15 0.16
42 3 0.03
43 73 0.80
ACGTcount: A:0.14, C:0.23, G:0.32, T:0.31
Consensus pattern (43 bp):
GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
Found at i:75506228 original size:28 final size:29
Alignment explanation
Indices: 75506161--75506261 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
75506151 ATAGTGAATC
*
75506161 CGCACACTTAGTGCTATATACATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
75506190 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
75506218 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
75506248 CGCACACTTAGTGC
1 CGCACACTTAGTGC
75506262 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.36
29 20 0.31
30 19 0.30
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:75510190 original size:40 final size:40
Alignment explanation
Indices: 75510097--75510247 Score: 132
Period size: 40 Copynumber: 3.8 Consensus size: 40
75510087 AATTGAATGA
* * * **
75510097 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTCA-TAC
* * *
75510137 TATCTGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT--CATAC
*
75510178 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATAC
*
75510217 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
75510248 ACGTGGTTGT
Statistics
Matches: 90, Mismatches: 13, Indels: 16
0.76 0.11 0.13
Matches are distributed among these distances:
38 1 0.01
39 5 0.06
40 82 0.91
41 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATAC
Found at i:75510261 original size:40 final size:40
Alignment explanation
Indices: 75510134--75510263 Score: 145
Period size: 40 Copynumber: 3.2 Consensus size: 40
75510124 ATGCTGGAAA
* * * *
75510134 TTATATCTGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
75510174 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
75510214 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
*
75510254 TTGTATCCGG
1 TTATATCCGG
75510264 TTATATTCCG
Statistics
Matches: 73, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:75521221 original size:31 final size:31
Alignment explanation
Indices: 75521163--75521221 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
75521153 GAAATAAGGT
* *
75521163 CACACGCCCGTGTGGGTAGGCTATGTGGTGA
1 CACACGCCCGTGTGCGTAGGCCATGTGGTGA
* *
75521194 CACACGCCCGTGTGCTTAGGCCGTGTGG
1 CACACGCCCGTGTGCGTAGGCCATGTGG
75521222 CAAATTAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.14, C:0.27, G:0.37, T:0.22
Consensus pattern (31 bp):
CACACGCCCGTGTGCGTAGGCCATGTGGTGA
Found at i:75523832 original size:27 final size:26
Alignment explanation
Indices: 75523802--75523917 Score: 88
Period size: 27 Copynumber: 4.3 Consensus size: 26
75523792 CTTATGTGAG
*
75523802 AAAATGACCAAAATACCCTGTTAGGCT
1 AAAATGACCAAAATACCCTG-TAGGGT
* **
75523829 AAAATGACGAAAATACCCCCATAGGGT
1 AAAATGACCAAAATA-CCCTGTAGGGT
* * *
75523856 AGAATGACCGAAATGCCCCTGTAGGGT
1 AAAATGACCAAAAT-ACCCTGTAGGGT
*** * *
75523883 AAAATGACTGTAATACCTCGGTAAGGT
1 AAAATGACCAAAATACC-CTGTAGGGT
75523910 AAAATGAC
1 AAAATGAC
75523918 AGATTTGTTC
Statistics
Matches: 70, Mismatches: 16, Indels: 6
0.76 0.17 0.07
Matches are distributed among these distances:
26 2 0.03
27 65 0.93
28 3 0.04
ACGTcount: A:0.40, C:0.20, G:0.21, T:0.20
Consensus pattern (26 bp):
AAAATGACCAAAATACCCTGTAGGGT
Found at i:75523995 original size:23 final size:23
Alignment explanation
Indices: 75523952--75524001 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
75523942 CTGTATTTGA
75523952 GCATGCCATGTTATATGTATGTT
1 GCATGCCATGTTATATGTATGTT
75523975 GCAT-CCATGTATAATAT-TATGTT
1 GCATGCCATGT-T-ATATGTATGTT
75523998 GCAT
1 GCAT
75524002 TGCATGAGGT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
22 6 0.24
23 15 0.60
24 4 0.16
ACGTcount: A:0.26, C:0.14, G:0.18, T:0.42
Consensus pattern (23 bp):
GCATGCCATGTTATATGTATGTT
Found at i:75525534 original size:37 final size:37
Alignment explanation
Indices: 75525475--75525580 Score: 176
Period size: 37 Copynumber: 2.9 Consensus size: 37
75525465 AGCTCAGACG
* *
75525475 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
75525512 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
75525549 TAGTCTCCACACGTAGTCATCGGGTCTTACCC
1 AAATCTCCACACGTAGTCATCGGGTCTTACCC
75525581 AGAATATATT
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:75525819 original size:47 final size:47
Alignment explanation
Indices: 75525746--75526119 Score: 534
Period size: 47 Copynumber: 8.0 Consensus size: 47
75525736 TTTCACACTA
* * * * * *
75525746 GCCATTTGGCTTTACCACATATATGCATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* *
75525793 GCCGTTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
75525840 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* * *
75525887 GCCATTCGGCCTCATCACATATATGCATG-TACATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCT-CACATTCATCACATTG
*
75525934 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* * * * *
75525981 GCCATTCGGCCTTATAACATATATACATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
*
75526028 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* ***
75526075 GCCATTCGGCCTTATCACATATATACACATTCACATTCATCACAT
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACAT
75526120 AAAATCCTAA
Statistics
Matches: 291, Mismatches: 34, Indels: 4
0.88 0.10 0.01
Matches are distributed among these distances:
46 1 0.00
47 289 0.99
48 1 0.00
ACGTcount: A:0.27, C:0.30, G:0.12, T:0.32
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
Found at i:75536871 original size:68 final size:65
Alignment explanation
Indices: 75536799--75537006 Score: 192
Period size: 67 Copynumber: 3.2 Consensus size: 65
75536789 CATCATGTGT
75536799 ACAAGAGAGCTACAAGATATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATG
1 ACAAGAGAGCTAC-AGATA-TAT-ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATG
75536864 TAG
63 TAG
** * * * * * *
75536867 ACAAGAGAGCTAC-GGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATG
1 ACAAGAGAGCTACAGATATATATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATG
75536931 TAG
63 TAG
* * * * *
75536934 ACAAGAGAGCTACGAGATA-A-AT-TGGCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-
1 ACAAGAGAGCTAC-AGATATATATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTA
75536995 G
65 G
75536996 TACAAGAGAGC
1 -ACAAGAGAGC
75537007 CGAACTATAT
Statistics
Matches: 114, Mismatches: 20, Indels: 17
0.75 0.13 0.11
Matches are distributed among these distances:
62 1 0.01
63 19 0.17
64 21 0.18
65 11 0.10
66 19 0.17
67 27 0.24
68 14 0.12
69 2 0.02
ACGTcount: A:0.32, C:0.16, G:0.29, T:0.23
Consensus pattern (65 bp):
ACAAGAGAGCTACAGATATATATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG
Found at i:75538095 original size:2 final size:2
Alignment explanation
Indices: 75538088--75538123 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
75538078 TCATGACATG
75538088 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
75538124 GACTAGTCTC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:75546885 original size:21 final size:21
Alignment explanation
Indices: 75546859--75546900 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
75546849 TTAATGTATG
75546859 ATTACCAGTGGATTATTTTGA
1 ATTACCAGTGGATTATTTTGA
*
75546880 ATTACCTGTGGATTATTTTGA
1 ATTACCAGTGGATTATTTTGA
75546901 GATATTTTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.26, C:0.10, G:0.19, T:0.45
Consensus pattern (21 bp):
ATTACCAGTGGATTATTTTGA
Found at i:75561776 original size:48 final size:48
Alignment explanation
Indices: 75561722--75561949 Score: 218
Period size: 48 Copynumber: 4.9 Consensus size: 48
75561712 CATATGGTAG
* *
75561722 GATGCCAATGCCATATCCCGGATATGGTCTTACATGGGATCACATATC
1 GATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCACATATC
* * * ** **
75561770 GATGCCAATGCCAT-GCCCTAAACATAGTCTTACATGGGATCGTAGGTC
1 GATGCCAATGCCATATCCC-AGACATGGTCTTACATGGGATCACATATC
*
75561818 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
1 GATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCACATATC
* *** * *
75561866 GATGCC---G--ATAGCCCAG-CTATGGTCTTACATAAAATTACATATT
1 GATGCCAATGCCATATCCCAGAC-ATGGTCTTACATGGGATCACATATC
* * *
75561909 GATGCCAAAGCCATGTCCCAGACATGGTCTTACATAGGATC
1 GATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATC
75561950 GTACATAACC
Statistics
Matches: 143, Mismatches: 28, Indels: 18
0.76 0.15 0.10
Matches are distributed among these distances:
42 1 0.01
43 33 0.23
45 1 0.01
46 1 0.01
47 3 0.02
48 100 0.70
49 4 0.03
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.26
Consensus pattern (48 bp):
GATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCACATATC
Found at i:75562860 original size:23 final size:23
Alignment explanation
Indices: 75562830--75562876 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
75562820 ATTAACCAAA
*
75562830 TGACAAAAATACCCTTAGGGCCT
1 TGACAAAAATACCCTTAGAGCCT
*
75562853 TGACAAAAATGCCCTTAGAGCCT
1 TGACAAAAATACCCTTAGAGCCT
75562876 T
1 T
75562877 TCTTTCTAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.23
Consensus pattern (23 bp):
TGACAAAAATACCCTTAGAGCCT
Found at i:75567422 original size:47 final size:47
Alignment explanation
Indices: 75567353--75567475 Score: 219
Period size: 47 Copynumber: 2.6 Consensus size: 47
75567343 AACAGCTCGT
75567353 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
75567400 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * *
75567447 AGTGTATATATGTGGTAAAGCCGAATGGC
1 AGTGTATATATGTGATAAGGCCTAATGGC
75567476 TAATGTGAAA
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 73 1.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:75567512 original size:48 final size:48
Alignment explanation
Indices: 75567453--75567720 Score: 437
Period size: 48 Copynumber: 5.6 Consensus size: 48
75567443 TGAAAGTGTA
75567453 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
75567501 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
75567549 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
* * * *
75567597 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATGTG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
* * * * * *
75567645 TATATGTCGTAAAGCCGAATGGCGAATGTGAAATGCGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
*
75567693 AATATGTGGTAAAGCCGAATGGCTAATG
1 TATATGTGGTAAAGCCGAATGGCTAATG
75567721 AGAATGTTGT
Statistics
Matches: 207, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 207 1.00
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.30
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
Found at i:75567819 original size:37 final size:37
Alignment explanation
Indices: 75567769--75567854 Score: 163
Period size: 37 Copynumber: 2.3 Consensus size: 37
75567759 GGAAATATAT
*
75567769 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
75567806 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
75567843 TCCGGGTAAGAC
1 TCCGGGTAAGAC
75567855 TTCGTAATAA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 48 1.00
ACGTcount: A:0.23, C:0.20, G:0.34, T:0.23
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:75569817 original size:40 final size:40
Alignment explanation
Indices: 75569751--75570101 Score: 546
Period size: 40 Copynumber: 8.8 Consensus size: 40
75569741 AAGAATTGAG
* * *
75569751 AGTGATATATCCAGG-CTAAATCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCC-GGACTAAGTTCCGAAGAGCATTCGTGCT
75569791 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
75569831 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
75569871 AGTGATGTA-CCGGATTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
75569910 AGTGATGTATCCAGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
75569950 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTC-TAGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGT-GCT
75569990 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * * * *
75570030 AGTAAGGCAACCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * *
75570070 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCA
75570102 ATCATGCTGG
Statistics
Matches: 289, Mismatches: 18, Indels: 8
0.92 0.06 0.03
Matches are distributed among these distances:
39 41 0.14
40 247 0.85
41 1 0.00
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
Found at i:75569984 original size:119 final size:120
Alignment explanation
Indices: 75569751--75570101 Score: 546
Period size: 119 Copynumber: 2.9 Consensus size: 120
75569741 AAGAATTGAG
* * *
75569751 AGTGATATATCCAGG-CTAAATCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCC
1 AGTGATGTATCC-GGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCC
75569815 GAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGT-GCT
65 GAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTC-TAGCT
* *
75569871 AGTGATGTA-CCGGATTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCAGACTAAGTTCCG
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
75569935 AAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCTAGCT
66 AAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCTAGCT
* * * * *
75569990 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTAAGGCAACCGGACTAAGTCCCG
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
* * *
75570055 AAGAGCATTCGTGCTAGTGATGTATCCGGGCTAGGTCCCGAAGAGCA
66 AAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCA
75570102 ATCATGCTGG
Statistics
Matches: 213, Mismatches: 15, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
118 3 0.01
119 110 0.52
120 100 0.47
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (120 bp):
AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
AAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCTAGCT
Found at i:75573635 original size:47 final size:47
Alignment explanation
Indices: 75573566--75573735 Score: 313
Period size: 47 Copynumber: 3.6 Consensus size: 47
75573556 AACAGCTCGT
75573566 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
75573613 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
75573660 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * *
75573707 AGTGTATATATGTGGTAAAGCCGAATGGC
1 AGTGTATATATGTGATAAGGCCTAATGGC
75573736 TAATGTGAAA
Statistics
Matches: 120, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 120 1.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:75573742 original size:47 final size:48
Alignment explanation
Indices: 75573566--75573985 Score: 326
Period size: 48 Copynumber: 8.8 Consensus size: 48
75573556 AACAGCTCGT
* * * **
75573566 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTG-ATGA-ATGTGAA
1 AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTGAAT-ACATGTGAA
* * * **
75573613 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTG-ATGA-ATGTGAA
1 AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTGAAT-ACATGTGAA
* * * **
75573660 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTG-ATGA-ATGTGAA
1 AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTGAAT-ACATGTGAA
**
75573707 AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTG
1 AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTG-AATACATGTGAA
* * **
75573756 A-TATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTG
1 AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTG-AATACATGTGAA
* * **
75573804 A-TATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTG
1 AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTG-AATACATGTGAA
* * * * *
75573852 A-TATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTG-AATACATGTGAA
* * * * * *
75573900 A-TGTGTATATGTCGTAAAGCCGAATGGCGAATGTGAAATGCGTATGAGAT
1 AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTG-AATAC--ATGTGAA
*
75573950 A-TG-A-ATATGTGGTAAAGCCGAATGGCTAATGAGAAT
1 AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTGAAT
75573986 GTTGTAACCT
Statistics
Matches: 344, Mismatches: 24, Indels: 10
0.91 0.06 0.03
Matches are distributed among these distances:
47 128 0.37
48 201 0.58
49 8 0.02
50 7 0.02
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (48 bp):
AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTGAATACATGTGAA
Found at i:75573772 original size:48 final size:48
Alignment explanation
Indices: 75573713--75573980 Score: 437
Period size: 48 Copynumber: 5.6 Consensus size: 48
75573703 TGAAAGTGTA
75573713 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
75573761 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
75573809 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
* * * *
75573857 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATGTG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
* * * * * *
75573905 TATATGTCGTAAAGCCGAATGGCGAATGTGAAATGCGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
*
75573953 AATATGTGGTAAAGCCGAATGGCTAATG
1 TATATGTGGTAAAGCCGAATGGCTAATG
75573981 AGAATGTTGT
Statistics
Matches: 207, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 207 1.00
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.30
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
Found at i:75574079 original size:37 final size:37
Alignment explanation
Indices: 75574029--75574114 Score: 163
Period size: 37 Copynumber: 2.3 Consensus size: 37
75574019 GGAAATATAT
*
75574029 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
75574066 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
75574103 TCCGGGTAAGAC
1 TCCGGGTAAGAC
75574115 TTCGTAATAA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 48 1.00
ACGTcount: A:0.23, C:0.20, G:0.34, T:0.23
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:75580862 original size:17 final size:18
Alignment explanation
Indices: 75580832--75580865 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
75580822 TTGGGCTAAA
75580832 ATGGGCTATGTGGGTCCC
1 ATGGGCTATGTGGGTCCC
75580850 ATGGGCT-TGTGGGTCC
1 ATGGGCTATGTGGGTCC
75580866 TACACAGGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.09, C:0.21, G:0.41, T:0.29
Consensus pattern (18 bp):
ATGGGCTATGTGGGTCCC
Found at i:75584318 original size:40 final size:40
Alignment explanation
Indices: 75584233--75584359 Score: 134
Period size: 40 Copynumber: 3.2 Consensus size: 40
75584223 CTGGAAATTA
* * *
75584233 TATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAG-CG-GC
1 TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTCGTTC
75584271 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTTC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTTC
* * * * *
75584313 TATCCGGGCTAAGACCTGAAGGCATTCCTGCACGTGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTTC
75584353 TATCCGG
1 TATCCGG
75584360 TTGTATTCCA
Statistics
Matches: 76, Mismatches: 8, Indels: 8
0.83 0.09 0.09
Matches are distributed among these distances:
38 1 0.01
39 3 0.04
40 68 0.89
41 2 0.03
42 2 0.03
ACGTcount: A:0.23, C:0.26, G:0.28, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTTC
Found at i:75590997 original size:28 final size:29
Alignment explanation
Indices: 75590899--75590997 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
75590889 CATGAGATTG
* *
75590899 GCACTAAGTGTGCGGGTTCAAAT-TGTATA
1 GCACTAAGTGTGCGAGTTCGAATAT-TATA
* * *
75590928 GCACTAAGTGTGCAAGTTTGATTA-TATA
1 GCACTAAGTGTGCGAGTTCGAATATTATA
*
75590956 GCACTAAGTGTGCGAGTTCGACTATTA-A
1 GCACTAAGTGTGCGAGTTCGAATATTATA
75590984 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
75590998 GGCTTATTAT
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 40 0.67
29 20 0.33
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTCGAATATTATA
Found at i:75598961 original size:28 final size:28
Alignment explanation
Indices: 75598896--75598994 Score: 119
Period size: 28 Copynumber: 3.5 Consensus size: 28
75598886 CATGAGATTG
* * *
75598896 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTT-AGATTATATA
*
75598925 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTAGATTATATA
* *
75598953 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTAGATTATAT-A
75598981 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
75598995 GGCTTATTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 1 0.02
28 45 0.71
29 17 0.27
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTAGATTATATA
Found at i:75607802 original size:40 final size:40
Alignment explanation
Indices: 75607743--75607884 Score: 135
Period size: 40 Copynumber: 3.5 Consensus size: 40
75607733 AAATTGAATG
* *
75607743 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAATT
* * * ***
75607783 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAATT
* * * *
75607823 A-ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGA-AATT
*
75607863 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
75607885 GCATTTGTGC
Statistics
Matches: 85, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
38 3 0.04
39 27 0.32
40 35 0.41
41 20 0.24
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAATT
Found at i:75615815 original size:40 final size:40
Alignment explanation
Indices: 75615722--75615872 Score: 132
Period size: 40 Copynumber: 3.8 Consensus size: 40
75615712 AATTGAATGA
* * * *
75615722 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGACA-TAC
* * * *
75615762 TATACGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
75615803 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
75615842 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
75615873 ACGTGGTTAT
Statistics
Matches: 90, Mismatches: 14, Indels: 14
0.76 0.12 0.12
Matches are distributed among these distances:
38 3 0.03
39 5 0.06
40 78 0.87
41 3 0.03
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:75615886 original size:40 final size:40
Alignment explanation
Indices: 75615759--75615888 Score: 145
Period size: 40 Copynumber: 3.2 Consensus size: 40
75615749 ATGCTGGAAA
* * * *
75615759 TTATATACGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * ***
75615799 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGACA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
75615839 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
75615879 TTATATCCGG
1 TTATATCCGG
75615889 TTATATTCCG
Statistics
Matches: 71, Mismatches: 18, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
39 1 0.01
40 70 0.99
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:75615887 original size:80 final size:80
Alignment explanation
Indices: 75615721--75615888 Score: 198
Period size: 80 Copynumber: 2.1 Consensus size: 80
75615711 AAATTGAATG
* *
75615721 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATATACGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATACGGGCTAAGACCCGAAGGCA
75615786 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * * * *
75615801 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTG-GAAATTATATACGGGCTAAGACCCGAAGG
* *
75615864 CATTTGTGC-ACGTGGTT
64 CAATTGTGCTA-GTGGCT
75615881 ATATCCGG
1 ATATCCGG
75615889 TTATATTCCG
Statistics
Matches: 74, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
79 5 0.07
80 69 0.93
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATACGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:75623505 original size:40 final size:39
Alignment explanation
Indices: 75623450--75623650 Score: 208
Period size: 40 Copynumber: 5.0 Consensus size: 39
75623440 ATGAAACCCA
* ** *
75623450 GGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCG
1 GGCTAAGACCCGAAGGCATTCGTGCGAGTG-TTATATCCG
* *
75623490 GGCTAAGACCTGAAGGCATTCGTGCGAGTTGTTAAATCCG
1 GGCTAAGACCCGAAGGCATTCGTGCGAG-TGTTATATCCG
75623530 GGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATATCCG
1 GGCTAAGACCCGAAGGCATTCGTGCGAG-TGTTATATCCG
* * * *
75623570 GGCTAAGACCCGAAGGCATTGGTGCAAGT-TACCAAATCCG
1 GGCTAAGACCCGAAGGCATTCGTGCGAGTGT--TATATCCG
* **
75623610 GGTTAAGACCCGAAGGCAATT-GTGCTTGTGGTTATATCCG
1 GGCTAAGACCCGAAGGC-ATTCGTGCGAGT-GTTATATCCG
75623650 G
1 G
75623651 TTAGATTCTG
Statistics
Matches: 138, Mismatches: 17, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
38 1 0.01
39 1 0.01
40 130 0.94
41 5 0.04
42 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (39 bp):
GGCTAAGACCCGAAGGCATTCGTGCGAGTGTTATATCCG
Found at i:75623585 original size:80 final size:79
Alignment explanation
Indices: 75623450--75623650 Score: 251
Period size: 80 Copynumber: 2.5 Consensus size: 79
75623440 ATGAAACCCA
* * *
75623450 GGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATATCCGGGCTAAGACCTGAAGGCATTCGTG
1 GGCTAAGACCCGAAGGCA-TTGTGCTAGTTG-TTATATCCGGGCTAAGACCCGAAGGCATTCGTG
* ***
75623514 CGAGTTGTTAAATCCG
64 CAAGTTACCAAATCCG
* *
75623530 GGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTGGTGC
1 GGCTAAGACCCGAAGGCATT-GTGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTCGTGC
75623595 AAGTTACCAAATCCG
65 AAGTTACCAAATCCG
* * *
75623610 GGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCCGG
1 GGCTAAGACCCGAAGGC-ATTGTGCTAGTTGTTATATCCGG
75623651 TTAGATTCTG
Statistics
Matches: 105, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
79 2 0.02
80 98 0.93
81 5 0.05
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (79 bp):
GGCTAAGACCCGAAGGCATTGTGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA
AGTTACCAAATCCG
Found at i:75633307 original size:46 final size:46
Alignment explanation
Indices: 75633218--75633307 Score: 112
Period size: 46 Copynumber: 2.0 Consensus size: 46
75633208 ATATCTAATA
* *
75633218 ATAAAAATTTCAAATATCAATAATACAGTAAATAATAATAATTTTC
1 ATAAAAATTTAAAATATCAATAATACAGTAAATAATAAGAATTTTC
**
75633264 ATAAAAATTTAAAATATCCGTAATA-A-TAAATATAGTAAGAATTT
1 ATAAAAATTTAAAATATCAATAATACAGTAAATA-A-TAAGAATTT
75633308 CCTAGTAGGA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
44 6 0.16
45 2 0.05
46 30 0.79
ACGTcount: A:0.54, C:0.07, G:0.04, T:0.34
Consensus pattern (46 bp):
ATAAAAATTTAAAATATCAATAATACAGTAAATAATAAGAATTTTC
Found at i:75641548 original size:37 final size:37
Alignment explanation
Indices: 75641507--75641583 Score: 154
Period size: 37 Copynumber: 2.1 Consensus size: 37
75641497 CAGGTATGTG
75641507 ATATATATATTATTTATGTGAGATTGATCTGACGAGA
1 ATATATATATTATTTATGTGAGATTGATCTGACGAGA
75641544 ATATATATATTATTTATGTGAGATTGATCTGACGAGA
1 ATATATATATTATTTATGTGAGATTGATCTGACGAGA
75641581 ATA
1 ATA
75641584 AAGAATGTGT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.36, C:0.05, G:0.18, T:0.40
Consensus pattern (37 bp):
ATATATATATTATTTATGTGAGATTGATCTGACGAGA
Found at i:75642724 original size:48 final size:48
Alignment explanation
Indices: 75642664--75642992 Score: 446
Period size: 48 Copynumber: 6.9 Consensus size: 48
75642654 ATAAGGTCCC
* *
75642664 GTGTAAGACCATGCCTGGGACATGGCATCGATGTTGATATGTGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGACGTTGATATGTGAGCCA
*
75642712 GTGCAAGACCATGTCTGGGACATGGCATC-AGCGTTGATATGTGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGA-CGTTGATATGTGAGCCA
* *
75642760 GTGTAAGGCCATGT-TAGGGACATGGCATCGGCGTTGATATGTGAGCCA
1 GTGTAAGACCATGTCT-GGGACATGGCATCGACGTTGATATGTGAGCCA
* * *
75642808 GTGTAAGACCATGTCTGGGACATGGCAACAACATTGATATGTGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGACGTTGATATGTGAGCCA
* * *
75642856 GTGTAAGACCATGTCTAGGACATGACATCGGCGTTGATATGTGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGACGTTGATATGTGAGCCA
*** *
75642904 GTGTAAGACCATGTCTAAAACATGGCATCGACGTTGATATGTGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGACGTTGATATGTGAGCCA
* * * * *
75642952 GTATAAGACAATGTTTTGGACATGGCATCGACATTGATATG
1 GTGTAAGACCATGTCTGGGACATGGCATCGACGTTGATATG
75642993 AAATCTCGTA
Statistics
Matches: 248, Mismatches: 29, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
47 2 0.01
48 245 0.99
49 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGACGTTGATATGTGAGCCA
Found at i:75646173 original size:47 final size:47
Alignment explanation
Indices: 75646082--75646207 Score: 135
Period size: 47 Copynumber: 2.7 Consensus size: 47
75646072 GAATAATACA
* * * * * *
75646082 TTGATTTGGTTACGGGCCATGCTATAGGTATTTAGAGAGGAGTTACT
1 TTGATTTGGATACGGGCCATGGTATAGGTACTCAGAGAGAAGTTACC
* * *
75646129 TTGATTTGGATACGGGCCATGGTATAGGTACTCCGGGATAAGTTACC
1 TTGATTTGGATACGGGCCATGGTATAGGTACTCAGAGAGAAGTTACC
* * * *
75646176 TCGATTTGGCTACGAGCCGTGGTATAGGTACT
1 TTGATTTGGATACGGGCCATGGTATAGGTACT
75646208 TATCAATTGT
Statistics
Matches: 66, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
47 66 1.00
ACGTcount: A:0.22, C:0.15, G:0.30, T:0.33
Consensus pattern (47 bp):
TTGATTTGGATACGGGCCATGGTATAGGTACTCAGAGAGAAGTTACC
Found at i:75648793 original size:43 final size:42
Alignment explanation
Indices: 75648639--75648843 Score: 148
Period size: 42 Copynumber: 4.8 Consensus size: 42
75648629 CAATGCCAAC
* * *
75648639 GTCCTAGACGTGGTCTTACATGTAATCAAATATCGATGC-AGG
1 GTCCCAGACATGGTCTTACATGTAATCAAATATCGATGCGA-T
* * *
75648681 GTCGCAGACGTGGTCTTACATGTAATCAAATATCGATGCCACT
1 GTCCCAGACATGGTCTTACATGTAATCAAATATCGATGCGA-T
* ** * *
75648724 GTCCTAGACA-GAGTCTTATGTGAAATCAAATA-CGATACTGAT
1 GTCCCAGACATG-GTCTTACATGTAATCAAATATCGATGC-GAT
* *
75648766 GTCCCAGACATGGTCTTACATGTAAATCTAGA-ATCGATGCCAAT
1 GTCCCAGACATGGTCTTACATGT-AATC-AAATATCGATG-CGAT
* ** * * *
75648810 GTCCTAGATGTGGTCTTACACGAAATCACATATC
1 GTCCCAGACATGGTCTTACATGTAATCAAATATC
75648844 AGAATCCTAT
Statistics
Matches: 129, Mismatches: 25, Indels: 17
0.75 0.15 0.10
Matches are distributed among these distances:
42 63 0.49
43 39 0.30
44 26 0.20
45 1 0.01
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.28
Consensus pattern (42 bp):
GTCCCAGACATGGTCTTACATGTAATCAAATATCGATGCGAT
Found at i:75652501 original size:17 final size:18
Alignment explanation
Indices: 75652479--75652512 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
75652469 CACATTGAAG
75652479 TGTTTT-AGTGAAAACCT
1 TGTTTTCAGTGAAAACCT
*
75652496 TGTTTTCATTGAAAACC
1 TGTTTTCAGTGAAAACC
75652513 CTTCCTTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.41
Consensus pattern (18 bp):
TGTTTTCAGTGAAAACCT
Found at i:75653717 original size:28 final size:28
Alignment explanation
Indices: 75653685--75653757 Score: 146
Period size: 28 Copynumber: 2.6 Consensus size: 28
75653675 TGTGACCCAT
75653685 TAGGCCCAAATCACATTCATATGGCCAC
1 TAGGCCCAAATCACATTCATATGGCCAC
75653713 TAGGCCCAAATCACATTCATATGGCCAC
1 TAGGCCCAAATCACATTCATATGGCCAC
75653741 TAGGCCCAAATCACATT
1 TAGGCCCAAATCACATT
75653758 TACAGTCATG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 45 1.00
ACGTcount: A:0.33, C:0.32, G:0.14, T:0.22
Consensus pattern (28 bp):
TAGGCCCAAATCACATTCATATGGCCAC
Found at i:75658733 original size:18 final size:20
Alignment explanation
Indices: 75658698--75658745 Score: 55
Period size: 18 Copynumber: 2.4 Consensus size: 20
75658688 CCTGCCCACG
75658698 ACCCCTTGGCTGTAGCTGACC
1 ACCCCTTGGCTG-AGCTGACC
*
75658719 ACCCCTTGG-TG-GCTGAGC
1 ACCCCTTGGCTGAGCTGACC
75658737 ACCACCTTG
1 ACC-CCTTG
75658746 ACCCACTATT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
18 9 0.36
19 5 0.20
20 2 0.08
21 9 0.36
ACGTcount: A:0.15, C:0.38, G:0.25, T:0.23
Consensus pattern (20 bp):
ACCCCTTGGCTGAGCTGACC
Found at i:75665135 original size:48 final size:48
Alignment explanation
Indices: 75665064--75665604 Score: 915
Period size: 48 Copynumber: 11.3 Consensus size: 48
75665054 TGTACAAGAT
* *
75665064 AAATATATATGAGATATGTATATGCGGTAAAGCCGAATGGCTAATGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
75665112 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* *
75665160 AAATAAGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTATTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* * * *
75665208 AAAAATATATGAGATATGTATATGTGGCAAAGCCGAATGGCTACTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
75665256 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
75665304 AAATATCTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
75665352 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTATTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* *
75665400 AAATA--TATGAGATATGTATATGTGGCAAAGCCGAATGGCTACTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
75665446 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
75665494 AAATATCTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
75665542 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
75665590 AAATATGTAGGAGAT
1 AAATATGTATGAGAT
75665605 GTGTGTATAT
Statistics
Matches: 468, Mismatches: 23, Indels: 4
0.95 0.05 0.01
Matches are distributed among these distances:
46 44 0.09
48 424 0.91
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.30
Consensus pattern (48 bp):
AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
Found at i:75666756 original size:28 final size:28
Alignment explanation
Indices: 75666725--75666800 Score: 116
Period size: 29 Copynumber: 2.7 Consensus size: 28
75666715 TGGCCCACTT
75666725 GGCCCAATCTCATTTATATAGCCCATTA
1 GGCCCAATCTCATTTATATAGCCCATTA
* * *
75666753 GGCCCAATTCACATTCATATGGCCCATTA
1 GGCCCAA-TCTCATTTATATAGCCCATTA
75666782 GGCCCAATCTCATTTATAT
1 GGCCCAATCTCATTTATAT
75666801 GACCCATCCG
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
28 17 0.40
29 25 0.60
ACGTcount: A:0.28, C:0.29, G:0.12, T:0.32
Consensus pattern (28 bp):
GGCCCAATCTCATTTATATAGCCCATTA
Found at i:75666777 original size:29 final size:28
Alignment explanation
Indices: 75666706--75666807 Score: 116
Period size: 28 Copynumber: 3.6 Consensus size: 28
75666696 AACCCTACAT
*
75666706 ACATGCATATGGCCCACTT-GGCCCAATC
1 ACATTCATATGGCCCA-TTAGGCCCAATC
* * *
75666734 TCATTTATATAGCCCATTAGGCCCAATTC
1 ACATTCATATGGCCCATTAGGCCCAA-TC
75666763 ACATTCATATGGCCCATTAGGCCCAATC
1 ACATTCATATGGCCCATTAGGCCCAATC
* * *
75666791 TCATTTATATGACCCAT
1 ACATTCATATGGCCCAT
75666808 CCGGCCTTAA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
27 2 0.03
28 35 0.56
29 25 0.40
ACGTcount: A:0.27, C:0.30, G:0.13, T:0.29
Consensus pattern (28 bp):
ACATTCATATGGCCCATTAGGCCCAATC
Found at i:75674829 original size:124 final size:122
Alignment explanation
Indices: 75674609--75674830 Score: 266
Period size: 124 Copynumber: 1.8 Consensus size: 122
75674599 GAATTATGTG
* * * * *
75674609 GAATGAAATATGGATGTATTGATTATTGATTTATGTGTGTATCAGTATTCGAATAATGCCCGGGC
1 GAATGAAATATGGATGTAATGATTATTGATGTATGTGTGCATCAGAATTCGAATAATACCCGGGC
* * * * **
75674674 TAAGTCCCGAAGGCGATTATGCTAGTGATTATAATTGTGTTTGAGCCTTAGTAACGA
66 TAAGCCCCAAAGACAATTATGCTAGAAATTATAATTGTGTTTGAGCCTTAGTAACGA
* * * *
75674731 GAATGAAATATGTATGTCCAATGATTATTGATGTATGTGTGCATGAGAAATT-GAATGATATCCG
1 GAATGAAATATGGATGT--AATGATTATTGATGTATGTGTGCATCAG-AATTCGAATAATACCCG
*
75674795 GGCTAAGCCCCAAAGACAATTATGCTGGAAATTATA
63 GGCTAAGCCCCAAAGACAATTATGCTAGAAATTATA
75674831 TCCGGGTTAA
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
122 16 0.20
124 62 0.77
125 3 0.04
ACGTcount: A:0.32, C:0.12, G:0.23, T:0.33
Consensus pattern (122 bp):
GAATGAAATATGGATGTAATGATTATTGATGTATGTGTGCATCAGAATTCGAATAATACCCGGGC
TAAGCCCCAAAGACAATTATGCTAGAAATTATAATTGTGTTTGAGCCTTAGTAACGA
Found at i:75674855 original size:40 final size:40
Alignment explanation
Indices: 75674788--75674939 Score: 146
Period size: 40 Copynumber: 3.8 Consensus size: 40
75674778 AAATTGAATG
* * * *
75674788 ATATCCGGGCTAAGCCCCAAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* * ****
75674828 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* *
75674868 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GAAATT
* *
75674908 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
75674940 ACGTGGTTAT
Statistics
Matches: 89, Mismatches: 20, Indels: 6
0.77 0.17 0.05
Matches are distributed among these distances:
39 3 0.03
40 84 0.94
41 2 0.02
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
Found at i:75674953 original size:40 final size:40
Alignment explanation
Indices: 75674826--75674953 Score: 150
Period size: 40 Copynumber: 3.2 Consensus size: 40
75674816 ATGCTGGAAA
* * *
75674826 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * ***
75674866 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGACA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
75674906 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
75674946 TTATATCC
1 TTATATCC
75674954 AGTTATATTC
Statistics
Matches: 70, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 69 0.99
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:75677200 original size:23 final size:23
Alignment explanation
Indices: 75677174--75677221 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
75677164 AGTTTTGGGT
75677174 TTTCTTATGTTTTGTTATTTTTA
1 TTTCTTATGTTTTGTTATTTTTA
75677197 TTTCTTATGTTTTGTTATTTTTA
1 TTTCTTATGTTTTGTTATTTTTA
75677220 TT
1 TT
75677222 CTTTTGAGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.12, C:0.04, G:0.08, T:0.75
Consensus pattern (23 bp):
TTTCTTATGTTTTGTTATTTTTA
Found at i:75677234 original size:22 final size:23
Alignment explanation
Indices: 75677186--75677234 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 23
75677176 TCTTATGTTT
***
75677186 TGTTATTTTTATTTCTTATGTTT
1 TGTTATTTTTATTTCTTATGAGA
*
75677209 TGTTATTTTTA-TTCTTTTGAGA
1 TGTTATTTTTATTTCTTATGAGA
75677231 TGTT
1 TGTT
75677235 TTCTTTCATT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
22 11 0.50
23 11 0.50
ACGTcount: A:0.14, C:0.04, G:0.12, T:0.69
Consensus pattern (23 bp):
TGTTATTTTTATTTCTTATGAGA
Found at i:75679487 original size:27 final size:28
Alignment explanation
Indices: 75679430--75679499 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
75679420 AAACTTGTAC
*
75679430 AGCACTAAGTGTGCGAGTTTGATCATGT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
75679458 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
75679485 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
75679500 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:75679510 original size:27 final size:27
Alignment explanation
Indices: 75679430--75679511 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
75679420 AAACTTGTAC
* * *
75679430 AGCACTAAGTGTGCGAGTTTGA-TCATGT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
75679458 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
75679485 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
75679512 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:75687248 original size:13 final size:13
Alignment explanation
Indices: 75687230--75687255 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
75687220 TGTGGACAAA
75687230 AATAGCCAATTTG
1 AATAGCCAATTTG
75687243 AATAGCCAATTTG
1 AATAGCCAATTTG
75687256 CCACCCCAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
AATAGCCAATTTG
Found at i:75688079 original size:43 final size:42
Alignment explanation
Indices: 75688032--75688190 Score: 131
Period size: 43 Copynumber: 3.7 Consensus size: 42
75688022 AACATATACA
* *
75688032 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAACATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAATCAAA-ATCG
** * * * *
75688075 ATGCCATTGTCCCAGACAAGGTCTTACACGAAAT-TAGATACG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAATCAAAAT-CG
* * * * * *
75688117 ATGCCGATGTCCCAGACATAGTCTTACACATAAAACATAAGTCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGT-AATCA-AAATCG
* *
75688161 ATGCCAACGTCCTAGACGTGGTCTTACACG
1 ATGCCAACGTCCCAGACATGGTCTTACACG
75688191 AAAACACATG
Statistics
Matches: 88, Mismatches: 24, Indels: 7
0.74 0.20 0.06
Matches are distributed among these distances:
41 2 0.02
42 28 0.32
43 30 0.34
44 26 0.30
45 2 0.02
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.23
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGTAATCAAAATCG
Found at i:75694205 original size:43 final size:42
Alignment explanation
Indices: 75694158--75694316 Score: 122
Period size: 43 Copynumber: 3.7 Consensus size: 42
75694148 AACATATACA
* *
75694158 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAACATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAATCAAA-ATCG
** * ** * *
75694201 ATGCCATTGTCCCAGACAAGGTCTTACACAAAAT-TAGATACG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAATCAAAAT-CG
* * * * * *
75694243 ATGCCGATGTCCTAGACATAGTCTTACACGTAAAACATAAGTCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGT-AATCA-AAATCG
* *
75694287 ATGCCAACGTCCTAGACGTGGTCTTACACG
1 ATGCCAACGTCCCAGACATGGTCTTACACG
75694317 AAAACACATA
Statistics
Matches: 88, Mismatches: 24, Indels: 7
0.74 0.20 0.06
Matches are distributed among these distances:
41 2 0.02
42 27 0.31
43 29 0.33
44 28 0.32
45 2 0.02
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGTAATCAAAATCG
Found at i:75700114 original size:25 final size:25
Alignment explanation
Indices: 75700039--75700114 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
75700029 GTGTATATAT
75700039 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
75700064 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
75700086 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
75700111 GTGA
1 GTGA
75700115 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:75700210 original size:46 final size:47
Alignment explanation
Indices: 75700012--75700295 Score: 414
Period size: 47 Copynumber: 6.1 Consensus size: 47
75700002 TTAGGATTTT
** *
75700012 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
75700059 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
75700106 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
75700153 ATGTGATGAATGTGAACATGCATATATGTGATAAGG-CGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
75700199 ATGTGATGAATGTGAGCATGCATATGTGTGATAA-GCCGAATGG-CA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
75700244 ATGTG-TGAATATGAACATGCATATATGTGGTAAAGCCGAATGGTCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
75700290 ATGTGA
1 ATGTGA
75700296 AATATATATG
Statistics
Matches: 214, Mismatches: 19, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
44 24 0.11
45 17 0.08
46 55 0.26
47 118 0.55
ACGTcount: A:0.32, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:75700349 original size:93 final size:92
Alignment explanation
Indices: 75700034--75700349 Score: 315
Period size: 94 Copynumber: 3.4 Consensus size: 92
75700024 TGAATGTGTA
* * * * * * *
75700034 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGA
1 TATATGTGATAAAGCCGAATGGCTAGTGTGA-GAATATGAACATGCATATATGTGATAAAGCCGA
*
75700099 ATGGCCAATGTGGTGAATATGA-ACATG
65 ATGGCCAATGTGATGAATATGAGACATG
* * *
75700126 CATATATGTGATAAGGCCGAATGGCCTA-TGTGATGAATGTGAACATGCATATATGTGAT-AAGG
1 --TATATGTGATAAAGCCGAATGG-CTAGTGTGA-GAATATGAACATGCATATATGTGATAAAGC
*
75700189 CGAATGGCCAATGTGATGAATGTGAG-CATG
62 CGAATGGCCAATGTGATGAATATGAGACATG
* * * *
75700219 CATATGTG-TGATAAGCCGAATGGC-AATGTGTGAATATGAACATGCATATATGTGGTAAAGCCG
1 TATATGTGAT-A-AAGCCGAATGGCTAGTGTGAGAATATGAACATGCATATATGTGATAAAGCCG
* *
75700282 AATGGTCAATGTGAAAT-ATATATGAGATATG
64 AATGGCCAATGTG--ATGA-ATATGAGACATG
*
75700313 TATATGTGGTAAAGCCGAATGGCTAGTGTGA-AATATG
1 TATATGTGATAAAGCCGAATGGCTAGTGTGAGAATATG
75700350 TAGGCGATGT
Statistics
Matches: 191, Mismatches: 19, Indels: 25
0.81 0.08 0.11
Matches are distributed among these distances:
90 25 0.13
91 30 0.16
92 11 0.06
93 55 0.29
94 67 0.35
95 3 0.02
ACGTcount: A:0.33, C:0.11, G:0.28, T:0.28
Consensus pattern (92 bp):
TATATGTGATAAAGCCGAATGGCTAGTGTGAGAATATGAACATGCATATATGTGATAAAGCCGAA
TGGCCAATGTGATGAATATGAGACATG
Found at i:75700609 original size:69 final size:71
Alignment explanation
Indices: 75700498--75700672 Score: 255
Period size: 69 Copynumber: 2.5 Consensus size: 71
75700488 GGAAATATAT
* * *
75700498 TCCGGGTGAGACCTGATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATGACTACGTGT-
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGAGTATGTCCGGGTAAGACCCGATGACTACGTGTG
75700562 GAGA-G
66 GAGATG
75700567 TCCGGGTAAGACCCGATGACTACGTGTGGAGAGTATGTCCGGGTAAGACCCGATGACTACGTGTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGAGTATGTCCGGGTAAGACCCGATGACTACGTGTG
75700632 GAGATTTTG
66 GAGA---TG
* * *
75700641 TCTGGGTAAGACCCGATAACTTCGTGTGGAGA
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGA
75700673 TTTCGTCTGA
Statistics
Matches: 95, Mismatches: 6, Indels: 5
0.90 0.06 0.05
Matches are distributed among these distances:
69 61 0.64
70 4 0.04
74 30 0.32
ACGTcount: A:0.23, C:0.19, G:0.34, T:0.24
Consensus pattern (71 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGAGTATGTCCGGGTAAGACCCGATGACTACGTGTG
GAGATG
Found at i:75700675 original size:37 final size:37
Alignment explanation
Indices: 75700498--75700674 Score: 256
Period size: 37 Copynumber: 4.9 Consensus size: 37
75700488 GGAAATATAT
* *
75700498 TCCGGGTGAGACCTGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
75700535 TCCGGGTAAGACCCGATGACTACGTGT-GAG---A-G
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
75700567 TCCGGGTAAGACCCGATGACTACGTGTGGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
75700604 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
75700641 TCTGGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
75700675 TCGTCTGAGC
Statistics
Matches: 128, Mismatches: 7, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
32 28 0.22
33 4 0.03
36 4 0.03
37 92 0.72
ACGTcount: A:0.23, C:0.19, G:0.33, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:75701998 original size:40 final size:40
Alignment explanation
Indices: 75701943--75702290 Score: 560
Period size: 40 Copynumber: 8.8 Consensus size: 40
75701933 GAGAATTGAG
*
75701943 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCATGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
* *
75701983 AGTGATATATCCGGGCT-AATCCCGAAGAGCATACTTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
75702022 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
* * *
75702062 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
75702102 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
75702142 AGTGATATAT-C-GGCT-AATCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
75702179 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
* * *
75702219 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
* **
75702259 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCA
75702291 ATCATGCTGG
Statistics
Matches: 289, Mismatches: 15, Indels: 8
0.93 0.05 0.03
Matches are distributed among these distances:
37 32 0.11
38 5 0.02
39 42 0.15
40 210 0.73
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
Found at i:75702231 original size:157 final size:159
Alignment explanation
Indices: 75701943--75702303 Score: 636
Period size: 157 Copynumber: 2.3 Consensus size: 159
75701933 GAGAATTGAG
75701943 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAATCCCGA
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAATCCCGA
*
75702008 AGAGCATACTTGCTAGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATGTATC
66 AGAGCATACGTGCTAGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATGTATC
75702073 CGGACTAAGTCCCGAAGAGCATTCGTGCT
131 CGGACTAAGTCCCGAAGAGCATTCGTGCT
*
75702102 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATATAT-C-GGCTAATCCCGA
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAATCCCGA
*
75702165 AGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATGTATC
66 AGAGCATACGTGCTAGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATGTATC
75702230 CGGACTAAGTCCCGAAGAGCATTCGTGCT
131 CGGACTAAGTCCCGAAGAGCATTCGTGCT
* ** * *
75702259 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCATGCTAGTGA
75702304 CGTGTATTCG
Statistics
Matches: 193, Mismatches: 9, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
157 143 0.74
158 1 0.01
159 49 0.25
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (159 bp):
AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAATCCCGA
AGAGCATACGTGCTAGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATGTATC
CGGACTAAGTCCCGAAGAGCATTCGTGCT
Found at i:75704965 original size:19 final size:19
Alignment explanation
Indices: 75704909--75704954 Score: 92
Period size: 19 Copynumber: 2.4 Consensus size: 19
75704899 ATTTATAGAG
75704909 ATGTGAATGAATTGTTGTT
1 ATGTGAATGAATTGTTGTT
75704928 ATGTGAATGAATTGTTGTT
1 ATGTGAATGAATTGTTGTT
75704947 ATGTGAAT
1 ATGTGAAT
75704955 AAATATTTGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.28, C:0.00, G:0.26, T:0.46
Consensus pattern (19 bp):
ATGTGAATGAATTGTTGTT
Found at i:75706430 original size:47 final size:47
Alignment explanation
Indices: 75706376--75706616 Score: 356
Period size: 47 Copynumber: 5.1 Consensus size: 47
75706366 TTAGGATTTT
** *
75706376 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
75706423 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
75706470 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
75706517 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
75706564 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGTCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
75706611 ATGTGA
1 ATGTGA
75706617 AATATATATA
Statistics
Matches: 173, Mismatches: 21, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 173 1.00
ACGTcount: A:0.32, C:0.11, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:75706495 original size:94 final size:94
Alignment explanation
Indices: 75706397--75706616 Score: 413
Period size: 94 Copynumber: 2.3 Consensus size: 94
75706387 GTGAATGTGT
75706397 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCG
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCG
75706462 AATGGCCAATGTGGTGAATATGAACATGC
66 AATGGCCAATGTGGTGAATATGAACATGC
75706491 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCG
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCG
75706556 AATGGCCAATGTGGTGAATATGAACATGC
66 AATGGCCAATGTGGTGAATATGAACATGC
* * *
75706585 ATATATGTGGTAAAGCCGAATGGTCAATGTGA
1 ATATATGTGATAAGGCCGAATGGCCAATGTGA
75706617 AATATATATA
Statistics
Matches: 123, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
94 123 1.00
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.26
Consensus pattern (94 bp):
ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCG
AATGGCCAATGTGGTGAATATGAACATGC
Found at i:75706884 original size:37 final size:37
Alignment explanation
Indices: 75706834--75707014 Score: 283
Period size: 37 Copynumber: 4.9 Consensus size: 37
75706824 GGAAATATAT
*
75706834 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
75706871 TCCGGGTAAGACCCGATGACTACGTGTGAAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
75706908 TCCGGGTAAGACCCGATGACTACGTGTGGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
75706945 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
75706982 TCCGGGTAACA-CCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
75707015 TCGTCTGAGC
Statistics
Matches: 135, Mismatches: 9, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
36 20 0.15
37 115 0.85
ACGTcount: A:0.24, C:0.19, G:0.33, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:75707997 original size:27 final size:27
Alignment explanation
Indices: 75707830--75707985 Score: 177
Period size: 27 Copynumber: 5.7 Consensus size: 27
75707820 GTGTTACAAG
**
75707830 AAAGGCTTTTTCTTTCACATTACGCCAC
1 AAAGGC-TTTTCTTTCATTTTACGCCAC
*
75707858 AAAGACTTTTCTTTCATTTTACGCCAC
1 AAAGGCTTTTCTTTCATTTTACGCCAC
* * * ** *
75707885 AAAGGCTTTCCTTTCACTTTATGTTAT
1 AAAGGCTTTTCTTTCATTTTACGCCAC
* *
75707912 AATGGCTTTTCTTTCATTTTACGCCAT
1 AAAGGCTTTTCTTTCATTTTACGCCAC
* * *
75707939 AAAGACTTTTCTTTAATTTTATGCCAC
1 AAAGGCTTTTCTTTCATTTTACGCCAC
75707966 AAAGGCTTTTCTTTCATTTT
1 AAAGGCTTTTCTTTCATTTT
75707986 TTGCCATAAA
Statistics
Matches: 105, Mismatches: 23, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
27 100 0.95
28 5 0.05
ACGTcount: A:0.24, C:0.22, G:0.10, T:0.45
Consensus pattern (27 bp):
AAAGGCTTTTCTTTCATTTTACGCCAC
Found at i:75708004 original size:27 final size:26
Alignment explanation
Indices: 75707837--75708005 Score: 131
Period size: 27 Copynumber: 6.3 Consensus size: 26
75707827 AAGAAAGGCT
** * * *
75707837 TTTTCTTTCACATTACGCCACAAAGAC
1 TTTTCTTTCATTTTATGCCATAAAG-G
* *
75707864 TTTTCTTTCATTTTACGCCACAAAGG
1 TTTTCTTTCATTTTATGCCATAAAGG
* * ** *
75707890 CTTTCCTTTCACTTTATGTTATAATGG
1 -TTTTCTTTCATTTTATGCCATAAAGG
* *
75707917 CTTTTCTTTCATTTTACGCCATAAAGAC
1 -TTTTCTTTCATTTTATGCCATAAAG-G
* *
75707945 TTTTCTTTAATTTTATGCCACAAAGG
1 TTTTCTTTCATTTTATGCCATAAAGG
*
75707971 CTTTTCTTTCATTTTTTGCCATAAAGG
1 -TTTTCTTTCATTTTATGCCATAAAGG
75707998 TTGTTCTT
1 TT-TTCTT
75708006 CTTGACTATA
Statistics
Matches: 114, Mismatches: 24, Indels: 8
0.78 0.16 0.05
Matches are distributed among these distances:
26 2 0.02
27 112 0.98
ACGTcount: A:0.22, C:0.21, G:0.10, T:0.46
Consensus pattern (26 bp):
TTTTCTTTCATTTTATGCCATAAAGG
Found at i:75708005 original size:54 final size:53
Alignment explanation
Indices: 75707837--75708005 Score: 176
Period size: 54 Copynumber: 3.1 Consensus size: 53
75707827 AAGAAAGGCT
* * * * *
75707837 TTTTCTTTCACATTACGCCACAAAGACTTTTCTTTCATTTTACGCCACAAAGG
1 TTTTCTTTAACTTTATGCCACAAAGGCTTTTCTTTCATTTTACGCCATAAAGG
* * ** * * *
75707890 CTTTCCTTTCACTTTATGTTATAATGGCTTTTCTTTCATTTTACGCCATAAAGAC
1 -TTTTCTTTAACTTTATGCCACAAAGGCTTTTCTTTCATTTTACGCCATAAAG-G
* **
75707945 TTTTCTTTAATTTTATGCCACAAAGGCTTTTCTTTCATTTTTTGCCATAAAGG
1 TTTTCTTTAACTTTATGCCACAAAGGCTTTTCTTTCATTTTACGCCATAAAGG
75707998 TTGTTCTT
1 TT-TTCTT
75708006 CTTGACTATA
Statistics
Matches: 93, Mismatches: 20, Indels: 4
0.79 0.17 0.03
Matches are distributed among these distances:
53 2 0.02
54 91 0.98
ACGTcount: A:0.22, C:0.21, G:0.10, T:0.46
Consensus pattern (53 bp):
TTTTCTTTAACTTTATGCCACAAAGGCTTTTCTTTCATTTTACGCCATAAAGG
Found at i:75708005 original size:81 final size:81
Alignment explanation
Indices: 75707830--75708005 Score: 228
Period size: 81 Copynumber: 2.2 Consensus size: 81
75707820 GTGTTACAAG
*
75707830 AAAGGCTTTTTCTTTCACATTACGCCACAAAGACTTTTCTTTCATTTTACGCCACAAAGGCTTTC
1 AAAGGC-TTTTCTTTCACATTACGCCACAAAGACTTTTCTTTAATTTTACGCCACAAAGGCTTTC
**
75707895 CTTTCACTTTATGTTAT
65 CTTTCACTTTATGCCAT
* ** * * *
75707912 AATGGCTTTTCTTTCATTTTACGCCATAAAGACTTTTCTTTAATTTTATGCCACAAAGGCTTTTC
1 AAAGGCTTTTCTTTCACATTACGCCACAAAGACTTTTCTTTAATTTTACGCCACAAAGGCTTTCC
* *
75707977 TTTCATTTTTTGCCAT
66 TTTCACTTTATGCCAT
75707993 AAAGG-TTGTTCTT
1 AAAGGCTT-TTCTT
75708006 CTTGACTATA
Statistics
Matches: 81, Mismatches: 12, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
80 2 0.02
81 74 0.91
82 5 0.06
ACGTcount: A:0.23, C:0.21, G:0.11, T:0.45
Consensus pattern (81 bp):
AAAGGCTTTTCTTTCACATTACGCCACAAAGACTTTTCTTTAATTTTACGCCACAAAGGCTTTCC
TTTCACTTTATGCCAT
Found at i:75708034 original size:32 final size:32
Alignment explanation
Indices: 75707998--75708060 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
75707988 GCCATAAAGG
*
75707998 TTGTTCTTCTTGACTATATACAATATTAATTA
1 TTGTTCTTCCTGACTATATACAATATTAATTA
75708030 TTGTTCTTCCTGACTATATACAATATTAATT
1 TTGTTCTTCCTGACTATATACAATATTAATT
75708061 TCCCTAAACT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.30, C:0.14, G:0.06, T:0.49
Consensus pattern (32 bp):
TTGTTCTTCCTGACTATATACAATATTAATTA
Found at i:75709540 original size:47 final size:47
Alignment explanation
Indices: 75709471--75709648 Score: 284
Period size: 47 Copynumber: 3.8 Consensus size: 47
75709461 ATTTCCTATC
*
75709471 ACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGA
1 ACATGCATATATGTGATAAGGCCGAATGGCCAATGTGGTGAATATGA
* *
75709518 ACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 ACATGCATATATGTGATAAGGCCGAATGGCCAATGTGGTGAATATGA
* *
75709565 GCATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGA
1 ACATGCATATATGTGATAAGGCCGAATGGCCAATGTGGTGAATATGA
* * *
75709612 ACATGCATATATGTGGTAAAGCCGAATGGTCAATGTG
1 ACATGCATATATGTGATAAGGCCGAATGGCCAATGTG
75709649 AAATATATAT
Statistics
Matches: 119, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 119 1.00
ACGTcount: A:0.32, C:0.13, G:0.29, T:0.26
Consensus pattern (47 bp):
ACATGCATATATGTGATAAGGCCGAATGGCCAATGTGGTGAATATGA
Found at i:75709592 original size:94 final size:94
Alignment explanation
Indices: 75709472--75709649 Score: 329
Period size: 94 Copynumber: 1.9 Consensus size: 94
75709462 TTTCCTATCA
75709472 CATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAA
1 CATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAA
*
75709537 GGCCGAATGGCCAATGTGATGAATGTGAG
66 AGCCGAATGGCCAATGTGATGAATGTGAG
*
75709566 CATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGGTAA
1 CATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAA
*
75709631 AGCCGAATGGTCAATGTGA
66 AGCCGAATGGCCAATGTGA
75709650 AATATATATA
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
94 81 1.00
ACGTcount: A:0.32, C:0.13, G:0.29, T:0.26
Consensus pattern (94 bp):
CATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAA
AGCCGAATGGCCAATGTGATGAATGTGAG
Found at i:75709605 original size:25 final size:24
Alignment explanation
Indices: 75709479--75709601 Score: 73
Period size: 24 Copynumber: 5.2 Consensus size: 24
75709469 TCACATGCAT
75709479 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
* **
75709503 ATGTGGTGAATATGAAC--AT-G-CA
1 ATGT-GTG-ATAAGGCCGAATGGCCA
*
75709525 TATATGTGATAAGGCCGAATGGCCA
1 -ATGTGTGATAAGGCCGAATGGCCA
* * *
75709550 ATGTGATGA-ATGTG-AGCAT-G-CA
1 ATGTG-TGATAAG-GCCGAATGGCCA
75709572 TATGTGTGATAAGGCCGAATGGCCA
1 -ATGTGTGATAAGGCCGAATGGCCA
75709597 ATGTG
1 ATGTG
75709602 GTGAATATGA
Statistics
Matches: 71, Mismatches: 14, Indels: 28
0.63 0.12 0.25
Matches are distributed among these distances:
21 5 0.07
22 11 0.15
23 17 0.24
24 22 0.31
25 11 0.15
26 5 0.07
ACGTcount: A:0.31, C:0.13, G:0.31, T:0.25
Consensus pattern (24 bp):
ATGTGTGATAAGGCCGAATGGCCA
Found at i:75710050 original size:37 final size:37
Alignment explanation
Indices: 75709868--75710049 Score: 292
Period size: 37 Copynumber: 4.9 Consensus size: 37
75709858 GGAAATATAT
*
75709868 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
75709905 TCCGGGTAAGACCCGATGACTACGTGTGAAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
75709942 TCCGGGTAAGACCCGATGACTACGTGTGGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
75709979 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
75710016 TCCGGGTAACACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
75710050 TCGTCTGAGC
Statistics
Matches: 136, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 136 1.00
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:75711033 original size:27 final size:27
Alignment explanation
Indices: 75710866--75711021 Score: 177
Period size: 27 Copynumber: 5.7 Consensus size: 27
75710856 GTGTTACAAG
**
75710866 AAAGGCTTTTTCTTTCACATTACGCCAC
1 AAAGGC-TTTTCTTTCATTTTACGCCAC
*
75710894 AAAGACTTTTCTTTCATTTTACGCCAC
1 AAAGGCTTTTCTTTCATTTTACGCCAC
* * * ** *
75710921 AAAGGCTTTCCTTTCACTTTATGTTAT
1 AAAGGCTTTTCTTTCATTTTACGCCAC
* *
75710948 AATGGCTTTTCTTTCATTTTACGCCAT
1 AAAGGCTTTTCTTTCATTTTACGCCAC
* * *
75710975 AAAGACTTTTCTTTAATTTTATGCCAC
1 AAAGGCTTTTCTTTCATTTTACGCCAC
75711002 AAAGGCTTTTCTTTCATTTT
1 AAAGGCTTTTCTTTCATTTT
75711022 TTGCCATAAA
Statistics
Matches: 105, Mismatches: 23, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
27 100 0.95
28 5 0.05
ACGTcount: A:0.24, C:0.22, G:0.10, T:0.45
Consensus pattern (27 bp):
AAAGGCTTTTCTTTCATTTTACGCCAC
Found at i:75711040 original size:27 final size:26
Alignment explanation
Indices: 75710873--75711041 Score: 131
Period size: 27 Copynumber: 6.3 Consensus size: 26
75710863 AAGAAAGGCT
** * * *
75710873 TTTTCTTTCACATTACGCCACAAAGAC
1 TTTTCTTTCATTTTATGCCATAAAG-G
* *
75710900 TTTTCTTTCATTTTACGCCACAAAGG
1 TTTTCTTTCATTTTATGCCATAAAGG
* * ** *
75710926 CTTTCCTTTCACTTTATGTTATAATGG
1 -TTTTCTTTCATTTTATGCCATAAAGG
* *
75710953 CTTTTCTTTCATTTTACGCCATAAAGAC
1 -TTTTCTTTCATTTTATGCCATAAAG-G
* *
75710981 TTTTCTTTAATTTTATGCCACAAAGG
1 TTTTCTTTCATTTTATGCCATAAAGG
*
75711007 CTTTTCTTTCATTTTTTGCCATAAAGG
1 -TTTTCTTTCATTTTATGCCATAAAGG
75711034 TTGTTCTT
1 TT-TTCTT
75711042 CTTGACTATA
Statistics
Matches: 114, Mismatches: 24, Indels: 8
0.78 0.16 0.05
Matches are distributed among these distances:
26 2 0.02
27 112 0.98
ACGTcount: A:0.22, C:0.21, G:0.10, T:0.46
Consensus pattern (26 bp):
TTTTCTTTCATTTTATGCCATAAAGG
Found at i:75711041 original size:54 final size:53
Alignment explanation
Indices: 75710873--75711041 Score: 176
Period size: 54 Copynumber: 3.1 Consensus size: 53
75710863 AAGAAAGGCT
* * * * *
75710873 TTTTCTTTCACATTACGCCACAAAGACTTTTCTTTCATTTTACGCCACAAAGG
1 TTTTCTTTAACTTTATGCCACAAAGGCTTTTCTTTCATTTTACGCCATAAAGG
* * ** * * *
75710926 CTTTCCTTTCACTTTATGTTATAATGGCTTTTCTTTCATTTTACGCCATAAAGAC
1 -TTTTCTTTAACTTTATGCCACAAAGGCTTTTCTTTCATTTTACGCCATAAAG-G
* **
75710981 TTTTCTTTAATTTTATGCCACAAAGGCTTTTCTTTCATTTTTTGCCATAAAGG
1 TTTTCTTTAACTTTATGCCACAAAGGCTTTTCTTTCATTTTACGCCATAAAGG
75711034 TTGTTCTT
1 TT-TTCTT
75711042 CTTGACTATA
Statistics
Matches: 93, Mismatches: 20, Indels: 4
0.79 0.17 0.03
Matches are distributed among these distances:
53 2 0.02
54 91 0.98
ACGTcount: A:0.22, C:0.21, G:0.10, T:0.46
Consensus pattern (53 bp):
TTTTCTTTAACTTTATGCCACAAAGGCTTTTCTTTCATTTTACGCCATAAAGG
Found at i:75711041 original size:81 final size:81
Alignment explanation
Indices: 75710866--75711041 Score: 228
Period size: 81 Copynumber: 2.2 Consensus size: 81
75710856 GTGTTACAAG
*
75710866 AAAGGCTTTTTCTTTCACATTACGCCACAAAGACTTTTCTTTCATTTTACGCCACAAAGGCTTTC
1 AAAGGC-TTTTCTTTCACATTACGCCACAAAGACTTTTCTTTAATTTTACGCCACAAAGGCTTTC
**
75710931 CTTTCACTTTATGTTAT
65 CTTTCACTTTATGCCAT
* ** * * *
75710948 AATGGCTTTTCTTTCATTTTACGCCATAAAGACTTTTCTTTAATTTTATGCCACAAAGGCTTTTC
1 AAAGGCTTTTCTTTCACATTACGCCACAAAGACTTTTCTTTAATTTTACGCCACAAAGGCTTTCC
* *
75711013 TTTCATTTTTTGCCAT
66 TTTCACTTTATGCCAT
75711029 AAAGG-TTGTTCTT
1 AAAGGCTT-TTCTT
75711042 CTTGACTATA
Statistics
Matches: 81, Mismatches: 12, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
80 2 0.02
81 74 0.91
82 5 0.06
ACGTcount: A:0.23, C:0.21, G:0.11, T:0.45
Consensus pattern (81 bp):
AAAGGCTTTTCTTTCACATTACGCCACAAAGACTTTTCTTTAATTTTACGCCACAAAGGCTTTCC
TTTCACTTTATGCCAT
Found at i:75711070 original size:32 final size:32
Alignment explanation
Indices: 75711034--75711096 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
75711024 GCCATAAAGG
*
75711034 TTGTTCTTCTTGACTATATACAATATTAATTA
1 TTGTTCTTCCTGACTATATACAATATTAATTA
75711066 TTGTTCTTCCTGACTATATACAATATTAATT
1 TTGTTCTTCCTGACTATATACAATATTAATT
75711097 TCCCTAAACT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.30, C:0.14, G:0.06, T:0.49
Consensus pattern (32 bp):
TTGTTCTTCCTGACTATATACAATATTAATTA
Found at i:75724901 original size:49 final size:49
Alignment explanation
Indices: 75724829--75725099 Score: 411
Period size: 49 Copynumber: 5.4 Consensus size: 49
75724819 TTTACCACAT
*
75724829 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
75724878 ATATATATACATTTTCACATTCATCACATCGGCCATGAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
75724927 ATATATATAC-CTTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACAC-TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
75724976 ATATATATAC-CTTTTCACATTCATCACATTGGCCATTAGGCCTTATCAC
1 ATATATATACAC-TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
75725025 ATATATATACACTTTCACATTCATCACATCGGCCATCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCAT--CA-----CATCGGCCATTAGGCCTTATCAC
75725081 ATATATATACACTTTCACA
1 ATATATATACACTTTCACA
75725100 AATTTTGATA
Statistics
Matches: 206, Mismatches: 7, Indels: 11
0.92 0.03 0.05
Matches are distributed among these distances:
49 162 0.79
50 1 0.00
51 2 0.01
56 41 0.20
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.34
Consensus pattern (49 bp):
ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:75738791 original size:9 final size:9
Alignment explanation
Indices: 75738777--75738805 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
75738767 ATGTAAATAT
75738777 ATAAGATGA
1 ATAAGATGA
75738786 ATAAGATGA
1 ATAAGATGA
75738795 ATAAGATGA
1 ATAAGATGA
75738804 AT
1 AT
75738806 TTAAAATGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.55, C:0.00, G:0.21, T:0.24
Consensus pattern (9 bp):
ATAAGATGA
Found at i:75740257 original size:40 final size:40
Alignment explanation
Indices: 75740213--75740399 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
75740203 CGATATATTA
* *
75740213 TATATCCGGGTTAAATCCCGCACGCTTCGTGCTGGTAATT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATG
* * *
75740253 TATATCCAGGTTAAATCCCGCAGGTTTCGTGTTGGTAATG
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATG
* * *
75740293 TATATCCGAGTTATATCCCCCAGGCTTCGTGCTGGTAATG
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATG
* * *
75740333 TATATCCGGGTTAAATCCCGTAGGCTTAGTGCTGGT-A-C
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATG
* *
75740371 TATAACCGGGCTTAAAGTTCCGCAGGCTT
1 TATATCCGGG-TTAAA-TCCCGCAGGCTT
75740400 TGAGCTAGTA
Statistics
Matches: 125, Mismatches: 20, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
38 9 0.07
39 6 0.05
40 110 0.88
ACGTcount: A:0.21, C:0.22, G:0.24, T:0.32
Consensus pattern (40 bp):
TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATG
Found at i:75742645 original size:14 final size:14
Alignment explanation
Indices: 75742626--75742659 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
75742616 AAGTCTACAC
75742626 TTAATTTCGAGAAT
1 TTAATTTCGAGAAT
*
75742640 TTAATTTTGAGAAT
1 TTAATTTCGAGAAT
75742654 TTAATT
1 TTAATT
75742660 CGACACACAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.35, C:0.03, G:0.12, T:0.50
Consensus pattern (14 bp):
TTAATTTCGAGAAT
Found at i:75744516 original size:43 final size:43
Alignment explanation
Indices: 75744449--75744534 Score: 127
Period size: 43 Copynumber: 2.0 Consensus size: 43
75744439 GTGCAAAGAC
* * *
75744449 AGGAGCTAGTTATAGGCATTTCATGCATGATAGGGTGTGACAT
1 AGGAACTAGTTAGAGGCATGTCATGCATGATAGGGTGTGACAT
* *
75744492 AGGAACTAGTTAGAGGCGTGTCATGCATGGTAGGGTGTGACAT
1 AGGAACTAGTTAGAGGCATGTCATGCATGATAGGGTGTGACAT
75744535 TGTCTTTGAT
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.27, C:0.12, G:0.34, T:0.28
Consensus pattern (43 bp):
AGGAACTAGTTAGAGGCATGTCATGCATGATAGGGTGTGACAT
Found at i:75752744 original size:58 final size:58
Alignment explanation
Indices: 75752654--75752769 Score: 214
Period size: 58 Copynumber: 2.0 Consensus size: 58
75752644 TAGTTCCAAG
* *
75752654 TCATTGGTTAGGTAATTTCTCTCGTGTGGCTTTAGTTTTCTCGAGGCATGGGCTATAA
1 TCATTGGTTAGGCAATTTCTCTCGTGTGGCTTTAGTTTTCTCGAGACATGGGCTATAA
75752712 TCATTGGTTAGGCAATTTCTCTCGTGTGGCTTTAGTTTTCTCGAGACATGGGCTATAA
1 TCATTGGTTAGGCAATTTCTCTCGTGTGGCTTTAGTTTTCTCGAGACATGGGCTATAA
75752770 CCTTACCTTC
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
58 56 1.00
ACGTcount: A:0.18, C:0.16, G:0.25, T:0.41
Consensus pattern (58 bp):
TCATTGGTTAGGCAATTTCTCTCGTGTGGCTTTAGTTTTCTCGAGACATGGGCTATAA
Found at i:75755241 original size:46 final size:46
Alignment explanation
Indices: 75755191--75755366 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
75755181 TGGTTGAGCA
75755191 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
75755237 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
75755282 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
75755330 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
75755367 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:75755347 original size:93 final size:93
Alignment explanation
Indices: 75755188--75755359 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
75755178 GGATGGTTGA
* *
75755188 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
75755253 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
75755281 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
75755346 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
75755360 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:75759972 original size:46 final size:45
Alignment explanation
Indices: 75759916--75760045 Score: 125
Period size: 46 Copynumber: 2.8 Consensus size: 45
75759906 TCATCTCGTA
* * *
75759916 GCCGACGCATGTCCCAAACATGTCTTACACTGGCTTACGCCTCGAG
1 GCCGATGCATGTCCTAAACATGTCTTACACTGGCTT-CGCCTCAAG
* * * * * * * *
75759962 GCTGATGCATGTCCTAGACGTGTCTCACACTAGCCCTCGTCTCAAT
1 GCCGATGCATGTCCTAAACATGTCTTACACT-GGCTTCGCCTCAAG
75760008 GCCGATGCCATGTCCTAAACATGGTCTTACACTGGCTT
1 GCCGATG-CATGTCCTAAACAT-GTCTTACACTGGCTT
75760046 TCATAATGTG
Statistics
Matches: 64, Mismatches: 17, Indels: 5
0.74 0.20 0.06
Matches are distributed among these distances:
46 37 0.58
47 18 0.28
48 9 0.14
ACGTcount: A:0.21, C:0.32, G:0.21, T:0.26
Consensus pattern (45 bp):
GCCGATGCATGTCCTAAACATGTCTTACACTGGCTTCGCCTCAAG
Found at i:75766225 original size:23 final size:22
Alignment explanation
Indices: 75766168--75766240 Score: 83
Period size: 22 Copynumber: 3.3 Consensus size: 22
75766158 ACGCTCTATT
*
75766168 GAGCTGAATAGTAGGCTTTTTC
1 GAGCTGAATAGTAAGCTTTTTC
* * *
75766190 AACCTGAACAGTAAGCTTTTTC
1 GAGCTGAATAGTAAGCTTTTTC
* *
75766212 GAGCTGAAATAGTAAGCTCTTAC
1 GAGCTG-AATAGTAAGCTTTTTC
75766235 GAGCTG
1 GAGCTG
75766241 TGGTGAGTCT
Statistics
Matches: 41, Mismatches: 9, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
22 22 0.54
23 19 0.46
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (22 bp):
GAGCTGAATAGTAAGCTTTTTC
Found at i:75773383 original size:30 final size:30
Alignment explanation
Indices: 75773347--75773447 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
75773337 GACAAGATTG
* * *
75773347 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
75773377 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
75773405 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
75773434 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
75773448 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:75773459 original size:29 final size:28
Alignment explanation
Indices: 75773376--75773451 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
75773366 AAAATTGTAC
* *
75773376 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
75773404 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
75773433 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
75773452 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:75781327 original size:28 final size:29
Alignment explanation
Indices: 75781290--75781356 Score: 91
Period size: 28 Copynumber: 2.3 Consensus size: 29
75781280 AAGTCTACAT
* *
75781290 ACATGCATATGGCCCACTAGG-CCTAATC
1 ACATTCATATGGCCCACTAGGCCCAAATC
* *
75781318 TCATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCACTAGGCCCAAATC
75781347 ACATTCATAT
1 ACATTCATAT
75781357 ACATGCTTTC
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
28 18 0.55
29 15 0.45
ACGTcount: A:0.30, C:0.30, G:0.13, T:0.27
Consensus pattern (29 bp):
ACATTCATATGGCCCACTAGGCCCAAATC
Found at i:75784166 original size:39 final size:39
Alignment explanation
Indices: 75784112--75784224 Score: 163
Period size: 39 Copynumber: 2.9 Consensus size: 39
75784102 AATGTTCAAG
75784112 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* * * *
75784151 TGATACCCGGGCTAAGCCCGAAGGCAATTGTGCAAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
75784190 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
75784225 GGTTACCATA
Statistics
Matches: 65, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 49 0.75
40 16 0.25
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
Found at i:75784240 original size:40 final size:39
Alignment explanation
Indices: 75784112--75784253 Score: 158
Period size: 39 Copynumber: 3.6 Consensus size: 39
75784102 AATGTTCAAG
* *
75784112 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATAACCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
75784151 TGATACCCGGGCTAAGCCCGAAGGCAATTGTGCAAGTTG
1 TGATAACCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * * *
75784190 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATAACCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
75784230 CCATAACCGGGCTATGTCCGAAGG
1 TGATAACCGGGCTAAGCCCGAAGG
75784254 TGTTTTGAAC
Statistics
Matches: 86, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 56 0.65
40 30 0.35
ACGTcount: A:0.24, C:0.23, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATAACCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:75789413 original size:40 final size:38
Alignment explanation
Indices: 75789364--75789471 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
75789354 ATCACGATTT
*
75789364 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
75789404 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
75789444 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
75789472 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:75789433 original size:80 final size:80
Alignment explanation
Indices: 75789323--75789471 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
75789313 TATGGTAACC
* * * *
75789323 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
75789387 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
75789403 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
75789468 CCGG
66 CCGG
75789472 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:75797573 original size:40 final size:39
Alignment explanation
Indices: 75797467--75797616 Score: 126
Period size: 40 Copynumber: 3.8 Consensus size: 39
75797457 ATCACGATTT
*
75797467 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
*
75797507 GCACGAA-GCCTTCGGGTCTTAGCCCGGAT-GTA-GCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATG--ACTA
* * * ** *
75797546 GCACAATTGCCTTCGGGTCTTAACCCGGTTATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
* * *
75797586 GCATAATTGTCTTCGGGGCTTAGCCCGGATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATA
75797617 TCATTCAATT
Statistics
Matches: 89, Mismatches: 15, Indels: 12
0.77 0.13 0.10
Matches are distributed among these distances:
37 1 0.01
38 4 0.04
39 29 0.33
40 54 0.61
41 1 0.01
ACGTcount: A:0.22, C:0.27, G:0.25, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
Found at i:75800389 original size:21 final size:21
Alignment explanation
Indices: 75800365--75800404 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
75800355 TTTTAATTAT
* *
75800365 TTAGGAAAGCTAAGCATGCGC
1 TTAGGAAAGCAAAGAATGCGC
75800386 TTAGGAAAGCAAAGAATGC
1 TTAGGAAAGCAAAGAATGC
75800405 ATGAAAGTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.40, C:0.15, G:0.28, T:0.17
Consensus pattern (21 bp):
TTAGGAAAGCAAAGAATGCGC
Found at i:75802522 original size:20 final size:20
Alignment explanation
Indices: 75802486--75802523 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
75802476 GTACGAAATT
*
75802486 AATTGAATTAATTATTAAAG
1 AATTGAATTAATAATTAAAG
75802506 AATTGAAATT-ATAATTAA
1 AATTG-AATTAATAATTAA
75802524 TTGAAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.53, C:0.00, G:0.08, T:0.39
Consensus pattern (20 bp):
AATTGAATTAATAATTAAAG
Found at i:75802527 original size:16 final size:16
Alignment explanation
Indices: 75802506--75802543 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
75802496 ATTATTAAAG
*
75802506 AATTGAAATTATAATT
1 AATTGAAATAATAATT
*
75802522 AATTGAAATAATAGTT
1 AATTGAAATAATAATT
75802538 AATTGA
1 AATTGA
75802544 TGCATGTTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.11, T:0.39
Consensus pattern (16 bp):
AATTGAAATAATAATT
Found at i:75802627 original size:80 final size:80
Alignment explanation
Indices: 75802536--75802695 Score: 277
Period size: 80 Copynumber: 2.0 Consensus size: 80
75802526 GAAATAATAG
*
75802536 TTAATTGATGCATGTTTAATCTT-TCAAGGTAGTTGAATGTTAAATTAGCAACAGTATTAAATAG
1 TTAATTGATGCATGTTTAATCTTCT-AAGGTAGTTCAATGTTAAATTAGCAACAGTATTAAATAG
*
75802600 TAAATTTGCCTTGCAT
65 TAAATTGGCCTTGCAT
75802616 TTAATTGATGCATGTTTAATCTTCTAAGGTAGTTCAATGTTAAATTAGCAACAGTATTAAATAGT
1 TTAATTGATGCATGTTTAATCTTCTAAGGTAGTTCAATGTTAAATTAGCAACAGTATTAAATAGT
*
75802681 ACATTGGCCTTGCAT
66 AAATTGGCCTTGCAT
75802696 AACTTATAAG
Statistics
Matches: 76, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
80 75 0.99
81 1 0.01
ACGTcount: A:0.33, C:0.11, G:0.16, T:0.39
Consensus pattern (80 bp):
TTAATTGATGCATGTTTAATCTTCTAAGGTAGTTCAATGTTAAATTAGCAACAGTATTAAATAGT
AAATTGGCCTTGCAT
Found at i:75820153 original size:31 final size:31
Alignment explanation
Indices: 75820109--75820254 Score: 231
Period size: 31 Copynumber: 4.7 Consensus size: 31
75820099 TTAGTCTTGA
* *
75820109 CATAT-ACTGGGCCGAAGCCTTTCCATTAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
75820139 CATATCACTAGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
* *
75820170 CATATCACTGTGCTGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
75820201 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
75820232 CATATCACTGGGTCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
75820255 ACTGTAAACG
Statistics
Matches: 106, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
30 5 0.05
31 101 0.95
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:75820325 original size:42 final size:42
Alignment explanation
Indices: 75820278--75820411 Score: 250
Period size: 42 Copynumber: 3.2 Consensus size: 42
75820268 TGGCCCTTAG
*
75820278 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
75820320 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
*
75820362 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATACAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
75820404 GCCCATTT
1 GCCCATTT
75820412 GGGGAGACTA
Statistics
Matches: 90, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 90 1.00
ACGTcount: A:0.34, C:0.20, G:0.14, T:0.31
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
Found at i:75821464 original size:27 final size:27
Alignment explanation
Indices: 75821434--75821498 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
75821424 GGGCATATTC
75821434 GTCATTTTACCATACAAGGG-TATTACG
1 GTCATTTTACCATACAAGGGCT-TTACG
* * *
75821461 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCATACAAGGGCTTTACG
*
75821488 GTCTTTTTACC
1 GTCATTTTACC
75821499 TGTTAGGGGT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACG
Found at i:75821582 original size:27 final size:27
Alignment explanation
Indices: 75821529--75821764 Score: 161
Period size: 27 Copynumber: 8.7 Consensus size: 27
75821519 TTTCATCCTA
* * * * *
75821529 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTCGGTAATTTTATAAAC
* *
75821556 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTCGGTAATTTTATAAAC
* ** * *
75821583 CAATGGTATTTCTATAATTTTTAAAAAGT
1 CAAGGGTATTTCGGTAA-TTTTATAAA-C
** * *
75821612 CAAGGGTATTTCTATAATTTTGTAAAT
1 CAAGGGTATTTCGGTAATTTTATAAAC
* * * *
75821639 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTCGGTAATTTTATAAAC
** * *
75821666 TGAGGGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTCGGTAATTTTATAAAC
75821693 C-AGTGGTATTTCGGTAATTTTATAAA-
1 CAAG-GGTATTTCGGTAATTTTATAAAC
* * *
75821719 CTAGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTCGGTAATTTTATAAAC
* * *
75821746 TAGGGGTATTTTGGTAATT
1 CAAGGGTATTTCGGTAATT
75821765 CTATCCTACA
Statistics
Matches: 168, Mismatches: 36, Indels: 10
0.79 0.17 0.05
Matches are distributed among these distances:
26 23 0.14
27 115 0.68
28 14 0.08
29 16 0.10
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTCGGTAATTTTATAAAC
Found at i:75821742 original size:80 final size:81
Alignment explanation
Indices: 75821616--75821764 Score: 214
Period size: 80 Copynumber: 1.9 Consensus size: 81
75821606 AAAAGTCAAG
* * *
75821616 GGTATTTCTATAATTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAA-TTGAGGGTATTTCGG
1 GGTATTTCGATAATTTTATAAATCAGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTCGG
75821680 TAATTTCACAAACCAGT
65 TAATTTCACAAACCAGT
* *
75821697 GGTATTTCGGTAATTTTATAAA-CTA-GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGG
1 GGTATTTCGATAATTTTATAAATC-AGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGG
75821760 TAATT
65 TAATT
75821765 CTATCCTACA
Statistics
Matches: 61, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
80 39 0.64
81 22 0.36
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.42
Consensus pattern (81 bp):
GGTATTTCGATAATTTTATAAATCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGGT
AATTTCACAAACCAGT
Found at i:75821781 original size:80 final size:81
Alignment explanation
Indices: 75821615--75821792 Score: 206
Period size: 80 Copynumber: 2.2 Consensus size: 81
75821605 AAAAAGTCAA
* *
75821615 GGGTATTTCTA-TAATTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCG
1 GGGTATTTC-AGTAATTTTATAAATCAGGGGTATTTTGGTAATTTTACAAATAGAGGGTATTTCG
75821679 GTAATTTCACAAACCAG
65 GTAATTTCACAAACCAG
* * *
75821696 TGGTATTTCGGTAATTTTATAAA-CTA-GGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTT
1 GGGTATTTCAGTAATTTTATAAATC-AGGGGTATTTTGGTAATTTTACAAA-TAGAGGGTATTTC
**
75821758 GGTAA-TTCTATCCTA-CAG
64 GGTAATTTC-A-CAAACCAG
75821776 GGGTATTTCAGTAATTT
1 GGGTATTTCAGTAATTT
75821793 CACAATCGAG
Statistics
Matches: 83, Mismatches: 9, Indels: 11
0.81 0.09 0.11
Matches are distributed among these distances:
79 3 0.04
80 56 0.67
81 24 0.29
ACGTcount: A:0.28, C:0.10, G:0.21, T:0.42
Consensus pattern (81 bp):
GGGTATTTCAGTAATTTTATAAATCAGGGGTATTTTGGTAATTTTACAAATAGAGGGTATTTCGG
TAATTTCACAAACCAG
Found at i:75821817 original size:26 final size:27
Alignment explanation
Indices: 75821786--75821845 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 27
75821776 GGGTATTTCA
* *
75821786 GTAATTTCACAATC-GAGTGTAAAATG
1 GTAATTTCACAAACTGAGGGTAAAATG
***
75821812 GTAATTTTGTAAACTGAGGGTAAAATG
1 GTAATTTCACAAACTGAGGGTAAAATG
75821839 GTAATTT
1 GTAATTT
75821846 TGTAAATCGA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 10 0.36
27 18 0.64
ACGTcount: A:0.37, C:0.07, G:0.22, T:0.35
Consensus pattern (27 bp):
GTAATTTCACAAACTGAGGGTAAAATG
Found at i:75821837 original size:27 final size:27
Alignment explanation
Indices: 75821796--75821887 Score: 123
Period size: 27 Copynumber: 3.4 Consensus size: 27
75821786 GTAATTTCAC
*
75821796 AATCGAGTGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
75821823 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAATGGTAATTTTGTA
* * * *
75821850 AATCGAGGGTAAAACGATAATTCTATA
1 AATCGAGGGTAAAATGGTAATTTTGTA
75821877 AATCGAGGGTA
1 AATCGAGGGTA
75821888 CTTTGGTAAT
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
26 1 0.02
27 56 0.97
28 1 0.02
ACGTcount: A:0.39, C:0.07, G:0.24, T:0.30
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTTTGTA
Found at i:75821860 original size:107 final size:107
Alignment explanation
Indices: 75821626--75821858 Score: 249
Period size: 107 Copynumber: 2.2 Consensus size: 107
75821616 GGTATTTCTA
* ** *
75821626 TAATTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAA
1 TAATTTTGTAAATCAGGGGTATTTTGGTAATTCTACAAACAGAGGGTATTTCAGTAATTTCACAA
** ***
75821691 ACCAGTGGTATTTCGGTAATTTTATAAACTAGGGTATTTTGG
66 ACCAGTGGTAAATCGGTAATTTTATAAACTAGGGTAAAATGG
** **
75821733 TAATTTTACAAA-CTAGGGGTATTTTGGTAATTCTATCCTACAG-GGGTATTTCAGTAATTTCAC
1 TAATTTTGTAAATC-AGGGGTATTTTGGTAATTCTA-CAAACAGAGGGTATTTCAGTAATTTCAC
* * *
75821796 AATCGAGT-GTAAAAT-GGTAATTTTGTAAACTGAGGGTAAAATGG
64 AAACCAGTGGT-AAATCGGTAATTTTATAAACT-AGGGTAAAATGG
75821840 TAATTTTGTAAATCGAGGG
1 TAATTTTGTAAATC-AGGG
75821859 TAAAACGATA
Statistics
Matches: 102, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
106 18 0.18
107 76 0.75
108 8 0.08
ACGTcount: A:0.31, C:0.09, G:0.22, T:0.38
Consensus pattern (107 bp):
TAATTTTGTAAATCAGGGGTATTTTGGTAATTCTACAAACAGAGGGTATTTCAGTAATTTCACAA
ACCAGTGGTAAATCGGTAATTTTATAAACTAGGGTAAAATGG
Found at i:75824188 original size:31 final size:31
Alignment explanation
Indices: 75824137--75824312 Score: 259
Period size: 31 Copynumber: 5.7 Consensus size: 31
75824127 TTAGTCTTGA
75824137 CATAT-ACTGGGCCAAAGCC-TTTCTATAAAT
1 CATATCACTGGGCCAAAGCCTTTTC-ATAAAT
* *
75824167 CATATCACTTGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCAAAGCCTTTTCATAAAT
* * *
75824198 CATATCACTAGGCCAAATCCTTTTTAT-AAT
1 CATATCACTGGGCCAAAGCCTTTTCATAAAT
75824228 CATATCACTGGGCCAAAGCCTTTTCATAAAT
1 CATATCACTGGGCCAAAGCCTTTTCATAAAT
*
75824259 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCAAAGCCTTTTCATAAAT
*
75824290 CATATCACTGGGCCGAAGCCTTT
1 CATATCACTGGGCCAAAGCCTTT
75824313 ACTGTAAACG
Statistics
Matches: 133, Mismatches: 10, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
30 32 0.24
31 97 0.73
32 4 0.03
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.31
Consensus pattern (31 bp):
CATATCACTGGGCCAAAGCCTTTTCATAAAT
Done.