Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 241 of 318
Found at i:75824236 original size:61 final size:62
Alignment explanation
Indices: 75824137--75824312 Score: 275
Period size: 61 Copynumber: 2.9 Consensus size: 62
75824127 TTAGTCTTGA
* *
75824137 CATAT-ACTGGGCCAAAGCCTTTCTATAAATCATATCACTTGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCAAAGCCTTTTTATAAATCATATCACTGGGCCGAAGCCTTTTCATAAAT
* * *
75824198 CATATCACTAGGCCAAATCCTTTTTAT-AATCATATCACTGGGCCAAAGCCTTTTCATAAAT
1 CATATCACTGGGCCAAAGCCTTTTTATAAATCATATCACTGGGCCGAAGCCTTTTCATAAAT
* *
75824259 CATATCACTGGGCCGAAGCCTTTTCATAAATCATATCACTGGGCCGAAGCCTTT
1 CATATCACTGGGCCAAAGCCTTTTTATAAATCATATCACTGGGCCGAAGCCTTT
75824313 ACTGTAAACG
Statistics
Matches: 103, Mismatches: 10, Indels: 3
0.89 0.09 0.03
Matches are distributed among these distances:
61 60 0.58
62 43 0.42
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.31
Consensus pattern (62 bp):
CATATCACTGGGCCAAAGCCTTTTTATAAATCATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:75824312 original size:92 final size:91
Alignment explanation
Indices: 75824137--75824312 Score: 291
Period size: 92 Copynumber: 1.9 Consensus size: 91
75824127 TTAGTCTTGA
*
75824137 CATATACTGGGCCAAAGCCTTTCTATAAATCATATCACTTGGCCGAAGCCTTTTCATAAATCATA
1 CATATACTGGGCCAAAGCCTTTCTATAAATCATATCACTGGGCCGAAGCCTTTTCATAAATCATA
*
75824202 TCACTAGGCCAAATCCTTTTTATAAT
66 TCACTAGGCCAAAGCCTTTTTATAAT
75824228 CATATCACTGGGCCAAAGCCTTT-TCATAAATCATATCACTGGGCCGAAGCCTTTTCATAAATCA
1 CATAT-ACTGGGCCAAAGCCTTTCT-ATAAATCATATCACTGGGCCGAAGCCTTTTCATAAATCA
* *
75824292 TATCACTGGGCCGAAGCCTTT
64 TATCACTAGGCCAAAGCCTTT
75824313 ACTGTAAACG
Statistics
Matches: 79, Mismatches: 4, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
91 6 0.08
92 73 0.92
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.31
Consensus pattern (91 bp):
CATATACTGGGCCAAAGCCTTTCTATAAATCATATCACTGGGCCGAAGCCTTTTCATAAATCATA
TCACTAGGCCAAAGCCTTTTTATAAT
Found at i:75824383 original size:42 final size:42
Alignment explanation
Indices: 75824336--75824511 Score: 325
Period size: 42 Copynumber: 4.2 Consensus size: 42
75824326 TGGCCCTTAG
*
75824336 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
*
75824378 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGAAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
75824420 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
*
75824462 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAT
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
75824504 GCCCATTT
1 GCCCATTT
75824512 GGGAAGACTA
Statistics
Matches: 130, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 130 1.00
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.32
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
Found at i:75824717 original size:26 final size:26
Alignment explanation
Indices: 75824659--75824728 Score: 92
Period size: 25 Copynumber: 2.8 Consensus size: 26
75824649 CTCTTTTAAT
75824659 AACTGGGGCAAAGCCC-TTTCTGATA
1 AACTGGGGCAAAGCCCTTTTCTGATA
*
75824684 AACTGGGGCAAAGCCCTTTTC-GGTA
1 AACTGGGGCAAAGCCCTTTTCTGATA
*
75824709 AACTAGGGG-AGAGCCCTTTT
1 AACT-GGGGCAAAGCCCTTTT
75824729 AGCACTTCCT
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
25 33 0.80
26 8 0.20
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (26 bp):
AACTGGGGCAAAGCCCTTTTCTGATA
Found at i:75825567 original size:27 final size:27
Alignment explanation
Indices: 75825537--75825600 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
75825527 GGGCATATTC
75825537 GTCATTTTACCATACAAGGG-TATTACG
1 GTCATTTTACCATACAAGGGCT-TTACG
* * *
75825564 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCATACAAGGGCTTTACG
*
75825591 GTCTTTTTAC
1 GTCATTTTAC
75825601 TTATTAGGGG
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.23, G:0.19, T:0.36
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACG
Found at i:75825685 original size:27 final size:27
Alignment explanation
Indices: 75825632--75825868 Score: 152
Period size: 27 Copynumber: 8.7 Consensus size: 27
75825622 TTTCATCCTA
* * * * *
75825632 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTCGGTAATTTTATAAAC
* *
75825659 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTCGGTAATTTTATAAAC
** ** * *
75825686 CAATAGTATTTCTATAATTTTTAGAAAGT
1 CAAGGGTATTTCGGTAA-TTTTATAAA-C
** * *
75825715 CAAGGGTATTTCTATAATTTTGTAAAT
1 CAAGGGTATTTCGGTAATTTTATAAAC
* * * *
75825742 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTCGGTAATTTTATAAAC
** * *
75825769 TGAGGGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTCGGTAATTTTATAAAC
75825796 C-AGTGGTATTTCGGTAATTTTATAAAC
1 CAAG-GGTATTTCGGTAATTTTATAAAC
* * * *
75825823 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTCGGTAATTTTATAAAC
* * *
75825850 TAGGGGTATTTTGGTAATT
1 CAAGGGTATTTCGGTAATT
75825869 CTATCCTACA
Statistics
Matches: 169, Mismatches: 37, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
26 2 0.01
27 137 0.81
28 15 0.09
29 15 0.09
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTCGGTAATTTTATAAAC
Found at i:75825804 original size:54 final size:54
Alignment explanation
Indices: 75825742--75825901 Score: 189
Period size: 54 Copynumber: 3.0 Consensus size: 54
75825732 TTTTGTAAAT
*
75825742 CAGGGGTATTTTGGTAATTTTACAAA-TTGAGGGTATTTCGGTAATTTCACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTCGGTAATTTCACAAAC
* * * * *
75825796 CAGTGGTATTTCGGTAATTTTATAAACTAGGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGGTAATTTCACAAAC
* * ** *
75825850 TAGGGGTATTTTGGTAATTCTATCCTAC-AGGGGTATTTCAGTAATTTCACAA
1 CAGGGGTATTTTGGTAATTTTA-CAAACTAGGGGTATTTCGGTAATTTCACAA
75825902 TCGAGGGTAA
Statistics
Matches: 88, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
54 84 0.95
55 4 0.05
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.39
Consensus pattern (54 bp):
CAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGGTAATTTCACAAAC
Found at i:75825835 original size:81 final size:81
Alignment explanation
Indices: 75825719--75825868 Score: 223
Period size: 81 Copynumber: 1.9 Consensus size: 81
75825709 GAAAGTCAAG
* * *
75825719 GGTATTTCTATAATTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAA-TTGAGGGTATTTCGG
1 GGTATTTCGATAATTTTATAAATCAGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTCGG
75825783 TAATTTCACAAACCAGT
65 TAATTTCACAAACCAGT
* *
75825800 GGTATTTCGGTAATTTTATAAA-CTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGG
1 GGTATTTCGATAATTTTATAAATC-AGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGG
75825864 TAATT
65 TAATT
75825869 CTATCCTACA
Statistics
Matches: 62, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
80 1 0.02
81 59 0.95
82 2 0.03
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.42
Consensus pattern (81 bp):
GGTATTTCGATAATTTTATAAATCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGGT
AATTTCACAAACCAGT
Found at i:75825885 original size:81 final size:81
Alignment explanation
Indices: 75825718--75825896 Score: 215
Period size: 81 Copynumber: 2.2 Consensus size: 81
75825708 AGAAAGTCAA
* *
75825718 GGGTATTTCTA-TAATTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCG
1 GGGTATTTC-AGTAATTTTATAAATCAGGGGTATTTTGGTAATTTTACAAATAGAGGGTATTTCG
75825782 GTAATTTCACAAACCAG
65 GTAATTTCACAAACCAG
* * *
75825799 TGGTATTTCGGTAATTTTATAAA-CTAGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTT
1 GGGTATTTCAGTAATTTTATAAATC-AGGGGTATTTTGGTAATTTTACAAA-TAGAGGGTATTTC
**
75825862 GGTAA-TTCTATCCTA-CAG
64 GGTAATTTC-A-CAAACCAG
75825880 GGGTATTTCAGTAATTT
1 GGGTATTTCAGTAATTT
75825897 CACAATCGAG
Statistics
Matches: 84, Mismatches: 9, Indels: 10
0.82 0.09 0.10
Matches are distributed among these distances:
80 4 0.05
81 76 0.90
82 4 0.05
ACGTcount: A:0.28, C:0.09, G:0.21, T:0.41
Consensus pattern (81 bp):
GGGTATTTCAGTAATTTTATAAATCAGGGGTATTTTGGTAATTTTACAAATAGAGGGTATTTCGG
TAATTTCACAAACCAG
Found at i:75825908 original size:27 final size:26
Alignment explanation
Indices: 75825739--75825908 Score: 112
Period size: 27 Copynumber: 6.3 Consensus size: 26
75825729 TAATTTTGTA
* *
75825739 AATCAGGGGTATTTTGGTAATTTTAC
1 AATCAGGGGTATTTCGGTAATTTCAC
*
75825765 AAAT-TGAGGGTATTTCGGTAATTTCAC
1 -AATCAG-GGGTATTTCGGTAATTTCAC
* * * *
75825792 AAACCAGTGGTATTTCGGTAATTTTAT
1 -AATCAGGGGTATTTCGGTAATTTCAC
* * *
75825819 AAACTAGGGGTATTTTGGTAATTTTAC
1 AATC-AGGGGTATTTCGGTAATTTCAC
* *
75825846 AAACTAGGGGTATTTTGGTAA-TTCTATC
1 AATC-AGGGGTATTTCGGTAATTTC-A-C
* *
75825874 -CTACAGGGGTATTTCAGTAATTTCAC
1 AAT-CAGGGGTATTTCGGTAATTTCAC
75825900 AATCGAGGG
1 AATC-AGGG
75825909 TAAAATGGTA
Statistics
Matches: 116, Mismatches: 18, Indels: 18
0.76 0.12 0.12
Matches are distributed among these distances:
26 8 0.07
27 102 0.88
28 6 0.05
ACGTcount: A:0.29, C:0.11, G:0.22, T:0.38
Consensus pattern (26 bp):
AATCAGGGGTATTTCGGTAATTTCAC
Found at i:75825934 original size:27 final size:27
Alignment explanation
Indices: 75825900--75825991 Score: 150
Period size: 27 Copynumber: 3.4 Consensus size: 27
75825890 GTAATTTCAC
75825900 AATCGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
75825927 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAATGGTAATTTTGTA
* *
75825954 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTTTGTA
75825981 AATCGAGGGTA
1 AATCGAGGGTA
75825992 CTTTGGTAAT
Statistics
Matches: 61, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
26 1 0.02
27 59 0.97
28 1 0.02
ACGTcount: A:0.38, C:0.05, G:0.26, T:0.30
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTTTGTA
Found at i:75826016 original size:54 final size:53
Alignment explanation
Indices: 75825890--75826008 Score: 143
Period size: 54 Copynumber: 2.2 Consensus size: 53
75825880 GGGTATTTCA
* * *
75825890 GTAATTTCACAATCGAGGGTAAAATGGTAATTTTGTAAACTGAGGGTAAAATG
1 GTAATTTTACAATCGAGGGTAAAATGGTAATTCTATAAACTGAGGGTAAAATG
***
75825943 GTAATTTTGTA-AATCGAGGGTAAAATGGTAATTCTATAAA-TCGAGGGTACTTTG
1 GTAA-TTT-TACAATCGAGGGTAAAATGGTAATTCTATAAACT-GAGGGTAAAATG
75825997 GTAATTTTACAA
1 GTAATTTTACAA
75826009 GTTGAGGGCA
Statistics
Matches: 56, Mismatches: 6, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
52 2 0.04
53 10 0.18
54 43 0.77
55 1 0.02
ACGTcount: A:0.36, C:0.08, G:0.23, T:0.34
Consensus pattern (53 bp):
GTAATTTTACAATCGAGGGTAAAATGGTAATTCTATAAACTGAGGGTAAAATG
Found at i:75832231 original size:19 final size:19
Alignment explanation
Indices: 75832209--75832246 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
75832199 TTAACCTCTA
75832209 TGTTTCTTCTTAAAATCTT
1 TGTTTCTTCTTAAAATCTT
75832228 TGTTTCTTCTTAAAATCTT
1 TGTTTCTTCTTAAAATCTT
75832247 CTTAAACTCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.21, C:0.16, G:0.05, T:0.58
Consensus pattern (19 bp):
TGTTTCTTCTTAAAATCTT
Found at i:75838705 original size:41 final size:41
Alignment explanation
Indices: 75838660--75838777 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
75838650 TGAAAGATAA
75838660 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
75838701 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
75838731 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
75838772 ATGTAG
1 ATGTAG
75838778 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:75838717 original size:71 final size:71
Alignment explanation
Indices: 75838628--75838791 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
75838618 GAGATGTATC
75838628 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
75838693 AGGACA
66 AGGACA
75838699 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
75838764 AGGACA
66 AGGACA
75838770 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
75838792 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:75850557 original size:15 final size:15
Alignment explanation
Indices: 75850537--75850568 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
75850527 TGTAACACCC
75850537 CGAACCCGAGACCAT
1 CGAACCCGAGACCAT
75850552 CGAACCCGAGACCAT
1 CGAACCCGAGACCAT
75850567 CG
1 CG
75850569 CCGGTCGGAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.31, C:0.41, G:0.22, T:0.06
Consensus pattern (15 bp):
CGAACCCGAGACCAT
Found at i:75851930 original size:39 final size:39
Alignment explanation
Indices: 75851887--75852016 Score: 154
Period size: 40 Copynumber: 3.3 Consensus size: 39
75851877 CGGAATATAA
75851887 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAG
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAG
* * * *
75851926 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAG
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAG
** * *
75851965 CCCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 -CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTT-AG
75852006 CCGGATATAAT
1 CCGGATATAAT
75852017 TTCCAGCATA
Statistics
Matches: 75, Mismatches: 13, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
38 1 0.01
39 34 0.45
40 39 0.52
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (39 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAG
Found at i:75852030 original size:40 final size:40
Alignment explanation
Indices: 75851887--75852052 Score: 142
Period size: 39 Copynumber: 4.2 Consensus size: 40
75851877 CGGAATATAA
* ** *
75851887 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAG-
1 CCGGATATAACCACCAGCACAATTGCCTTCGGGTCTTAGC
* **
75851926 CCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* * *
75851966 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACCAGCACAATTGCCTTCGGGTCTTAGC
*** * * *
75852006 CCGGATATAATTTCCAGCATAATTGTC-TCGGGGCTTAGC
1 CCGGATATAACCACCAGCACAATTGCCTTCGGGTCTTAGC
75852045 CCGGATAT
1 CCGGATAT
75852053 CATTCAATTT
Statistics
Matches: 104, Mismatches: 18, Indels: 10
0.79 0.14 0.08
Matches are distributed among these distances:
39 52 0.50
40 52 0.50
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:75859120 original size:40 final size:40
Alignment explanation
Indices: 75859075--75859242 Score: 187
Period size: 40 Copynumber: 4.2 Consensus size: 40
75859065 CGGAATATAA
75859075 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
75859115 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
75859155 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * *
75859195 CCGGATATAATTTCTAGCATAATTGTCCTT-GGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATG-CCTTCGGGTCTTAGC
75859235 CCGGATAT
1 CCGGATAT
75859243 CATTCAATTT
Statistics
Matches: 108, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
39 1 0.01
40 103 0.95
41 4 0.04
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:75859470 original size:25 final size:25
Alignment explanation
Indices: 75859436--75859486 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
75859426 ATAATTCAAG
75859436 TAAGGTCACTTCTTGAGGACTTACC
1 TAAGGTCACTTCTTGAGGACTTACC
75859461 TAAGGTCACTTCTTGAGGACTTACC
1 TAAGGTCACTTCTTGAGGACTTACC
75859486 T
1 T
75859487 CGGATGTTGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.33
Consensus pattern (25 bp):
TAAGGTCACTTCTTGAGGACTTACC
Found at i:75860512 original size:29 final size:29
Alignment explanation
Indices: 75860470--75860571 Score: 204
Period size: 29 Copynumber: 3.5 Consensus size: 29
75860460 GTGACAAGAT
75860470 TGGCACTAAGTGTGCAAGCTTGAAAAGTA
1 TGGCACTAAGTGTGCAAGCTTGAAAAGTA
75860499 TGGCACTAAGTGTGCAAGCTTGAAAAGTA
1 TGGCACTAAGTGTGCAAGCTTGAAAAGTA
75860528 TGGCACTAAGTGTGCAAGCTTGAAAAGTA
1 TGGCACTAAGTGTGCAAGCTTGAAAAGTA
75860557 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
75860572 GAATTTAAAT
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 73 1.00
ACGTcount: A:0.32, C:0.15, G:0.28, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCAAGCTTGAAAAGTA
Found at i:75860590 original size:29 final size:29
Alignment explanation
Indices: 75860558--75860630 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
75860548 TGAAAAGTAT
* * *
75860558 GGCACTAAGTGTGCGAATTTAAATTATAC
1 GGCACTAAGTGTGCGAACTTAAATCACAC
* * *
75860587 GGCACTATGTGTGCGAGCTTAAATCACAT
1 GGCACTAAGTGTGCGAACTTAAATCACAC
75860616 GGCACTAAGTGTGCG
1 GGCACTAAGTGTGCG
75860631 TGATCGATTA
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (29 bp):
GGCACTAAGTGTGCGAACTTAAATCACAC
Found at i:75860591 original size:58 final size:58
Alignment explanation
Indices: 75860471--75860630 Score: 195
Period size: 58 Copynumber: 2.8 Consensus size: 58
75860461 TGACAAGATT
*
75860471 GGCACTAAGTGTGCAAGCTTGAAAAGTATGGCACTAAGTGTGC-AAGCTTGAAAAGTAT
1 GGCACTAAGTGTGCAAGCTTGAAAAGTATGGCACTAAGTGTGCGAA-CTTGAAAAGTAC
*
75860529 GGCACTAAGTGTGCAAGCTTGAAAAGTATGGCACTAAGTGTGCGAA-TTTAAATTA-TAC
1 GGCACTAAGTGTGCAAGCTTGAAAAGTATGGCACTAAGTGTGCGAACTTGAAA--AGTAC
* * *
75860587 GGCACTATGTGTGCGAGCTT-AAATCA-CATGGCACTAAGTGTGCG
1 GGCACTAAGTGTGCAAGCTTGAAA--AGTATGGCACTAAGTGTGCG
75860631 TGATCGATTA
Statistics
Matches: 92, Mismatches: 5, Indels: 10
0.86 0.05 0.09
Matches are distributed among these distances:
57 8 0.09
58 80 0.87
59 4 0.04
ACGTcount: A:0.32, C:0.16, G:0.27, T:0.26
Consensus pattern (58 bp):
GGCACTAAGTGTGCAAGCTTGAAAAGTATGGCACTAAGTGTGCGAACTTGAAAAGTAC
Found at i:75863280 original size:18 final size:19
Alignment explanation
Indices: 75863257--75863292 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
75863247 TCTCTTAGGA
75863257 TGATCTTTCCCAT-ATAAG
1 TGATCTTTCCCATCATAAG
*
75863275 TGATCTTTTCCATCATAA
1 TGATCTTTCCCATCATAA
75863293 TTGAGTATAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.28, C:0.22, G:0.08, T:0.42
Consensus pattern (19 bp):
TGATCTTTCCCATCATAAG
Found at i:75871496 original size:16 final size:16
Alignment explanation
Indices: 75871475--75871511 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
75871465 TATTAATCGT
*
75871475 ATTGAAATTGTAATTA
1 ATTGAAATAGTAATTA
*
75871491 ATTGAAATAGTATTTA
1 ATTGAAATAGTAATTA
75871507 ATTGA
1 ATTGA
75871512 TGCATGTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.43, C:0.00, G:0.14, T:0.43
Consensus pattern (16 bp):
ATTGAAATAGTAATTA
Found at i:75874245 original size:21 final size:21
Alignment explanation
Indices: 75874196--75874246 Score: 84
Period size: 21 Copynumber: 2.4 Consensus size: 21
75874186 GAAGGAATTA
**
75874196 TGATGTGCGTAATCACTAGGT
1 TGATGTGTTTAATCACTAGGT
75874217 TGATGTGTTTAATCACTAGGT
1 TGATGTGTTTAATCACTAGGT
75874238 TGATGTGTT
1 TGATGTGTT
75874247 GTTGAAAGAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.22, C:0.10, G:0.27, T:0.41
Consensus pattern (21 bp):
TGATGTGTTTAATCACTAGGT
Found at i:75875243 original size:44 final size:42
Alignment explanation
Indices: 75875171--75875318 Score: 156
Period size: 41 Copynumber: 3.5 Consensus size: 42
75875161 TGTGTTTTCG
* * *
75875171 TGTAAGACCACGTCTAGGACGTTGGCATCGACTCATGATTTACG
1 TGTAAGACCACGTCTAGGACATTAGCATCGA-T-ATGATTTACA
* * *
75875215 TGTAAGACCACGTCTGGGACATTAGCATCGTTTTGATTT-CA
1 TGTAAGACCACGTCTAGGACATTAGCATCGATATGATTTACA
* **
75875256 TGTAAGACC-CTGTCTAGGACAGTAGCATCGATATTTTTTTACA
1 TGTAAGACCAC-GTCTAGGACATTAGCATCGATA-TGATTTACA
*
75875299 TGTAAGACCACGTCTGGGAC
1 TGTAAGACCACGTCTAGGAC
75875319 TTGGCATTGT
Statistics
Matches: 87, Mismatches: 13, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
40 1 0.01
41 28 0.32
42 10 0.11
43 20 0.23
44 28 0.32
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (42 bp):
TGTAAGACCACGTCTAGGACATTAGCATCGATATGATTTACA
Found at i:75875276 original size:41 final size:43
Alignment explanation
Indices: 75875171--75875318 Score: 160
Period size: 44 Copynumber: 3.5 Consensus size: 43
75875161 TGTGTTTTCG
* * ** *
75875171 TGTAAGACCACGTCTAGGACGTTGGCATCGACTCATGATTTACG
1 TGTAAGACCACGTCTAGGACATTAGCATCGA-TTTTGATTTACA
*
75875215 TGTAAGACCACGTCTGGGACATTAGCATCG-TTTTGATTT-CA
1 TGTAAGACCACGTCTAGGACATTAGCATCGATTTTGATTTACA
* *
75875256 TGTAAGACC-CTGTCTAGGACAGTAGCATCGATATTT-TTTTACA
1 TGTAAGACCAC-GTCTAGGACATTAGCATCGAT-TTTGATTTACA
*
75875299 TGTAAGACCACGTCTGGGAC
1 TGTAAGACCACGTCTAGGAC
75875319 TTGGCATTGT
Statistics
Matches: 89, Mismatches: 10, Indels: 11
0.81 0.09 0.10
Matches are distributed among these distances:
40 1 0.01
41 27 0.30
42 11 0.12
43 22 0.25
44 28 0.31
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (43 bp):
TGTAAGACCACGTCTAGGACATTAGCATCGATTTTGATTTACA
Found at i:75882882 original size:20 final size:20
Alignment explanation
Indices: 75882837--75882884 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
75882827 GACGTAAGTG
*
75882837 CTGAACGCCTTTGTATTGGA
1 CTGAACTCCTTTGTATTGGA
*
75882857 CCGAACTCCTTTGTATTGGA
1 CTGAACTCCTTTGTATTGGA
*
75882877 TTGAACTC
1 CTGAACTC
75882885 AAAGAAAATC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (20 bp):
CTGAACTCCTTTGTATTGGA
Found at i:75891100 original size:27 final size:27
Alignment explanation
Indices: 75891070--75891121 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
75891060 CTGCATGTGT
75891070 TGCAGCAAAAGATTTAGCCCGGACGAG
1 TGCAGCAAAAGATTTAGCCCGGACGAG
* *
75891097 TGCAGCAAAGGATTTAGCTCGGACG
1 TGCAGCAAAAGATTTAGCCCGGACG
75891122 GATAATCCGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.31, C:0.21, G:0.31, T:0.17
Consensus pattern (27 bp):
TGCAGCAAAAGATTTAGCCCGGACGAG
Found at i:75893492 original size:28 final size:26
Alignment explanation
Indices: 75893437--75893549 Score: 127
Period size: 27 Copynumber: 4.2 Consensus size: 26
75893427 AGCATGGTTG
* *
75893437 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
75893463 CCAGATACAGATAATCATGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
75893491 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
75893518 CCATATCAGATAATTTGTGGCATAGCCA
1 CCAGAACAGATAA--TGTGGCAGAGCCA
75893546 CCAG
1 CCAG
75893550 GACGCTTCCT
Statistics
Matches: 74, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
26 6 0.08
27 37 0.50
28 31 0.42
ACGTcount: A:0.37, C:0.23, G:0.22, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:75893520 original size:55 final size:54
Alignment explanation
Indices: 75893437--75893549 Score: 147
Period size: 55 Copynumber: 2.1 Consensus size: 54
75893427 AGCATGGTTG
*
75893437 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAA-TCATGGCAGAGCCA
1 CCAGAACAGATAATGTGACAGAGCCACCAGAT-CAGATAATTCATGGCAGAGCCA
* * ** *
75893491 CCAGAACAGATATATGTGGCAGAGCCACCATATCAGATAATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCACCAGATCAGATAATTCATGGCAGAGCCA
75893546 CCAG
1 CCAG
75893550 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
54 19 0.37
55 32 0.63
ACGTcount: A:0.37, C:0.23, G:0.22, T:0.18
Consensus pattern (54 bp):
CCAGAACAGATAATGTGACAGAGCCACCAGATCAGATAATTCATGGCAGAGCCA
Found at i:75897746 original size:29 final size:29
Alignment explanation
Indices: 75897714--75897786 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
75897704 CTTCGAGCTC
*
75897714 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
75897743 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
75897772 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
75897787 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:75905878 original size:29 final size:29
Alignment explanation
Indices: 75905846--75905918 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
75905836 CTTCGAGCTC
*
75905846 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
75905875 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
75905904 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
75905919 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:75915192 original size:27 final size:28
Alignment explanation
Indices: 75915135--75915204 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
75915125 AAATTTGTAC
**
75915135 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
75915163 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
75915190 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
75915205 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:75915213 original size:27 final size:27
Alignment explanation
Indices: 75915135--75915216 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
75915125 AAATTTGTAC
* *
75915135 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
75915163 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
75915190 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
75915217 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:75917265 original size:24 final size:24
Alignment explanation
Indices: 75917238--75917395 Score: 237
Period size: 24 Copynumber: 6.6 Consensus size: 24
75917228 CTTATTATGT
* * *
75917238 TCGCACACATAGAGCTATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
* *
75917262 TCGCACACGTAGTGCTATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
75917286 TCGCACACTTAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
75917310 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
*
75917334 TCGCACACATAGTGCCATAGT-GA
1 TCGCACACATAGTGCCATAGTAAA
75917357 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
75917381 TCGCACACATAGTGC
1 TCGCACACATAGTGC
75917396 ATTTGAGATA
Statistics
Matches: 124, Mismatches: 9, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
23 22 0.18
24 102 0.82
ACGTcount: A:0.34, C:0.25, G:0.19, T:0.22
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:75917275 original size:48 final size:48
Alignment explanation
Indices: 75917216--75917392 Score: 205
Period size: 48 Copynumber: 3.7 Consensus size: 48
75917206 ACCGAATGTG
* ** *
75917216 GCACACATAGTGCT-TATTATGTTCGCACACATAGAGCTATAGCAAATC
1 GCACACATAGTGCTATAGTA-AATCGCACACATAGAGCCATAGCAAATC
* * * *
75917264 GCACACGTAGTGCTATAGTAAATCGCACACTTAGTGCCATAGTAAATC
1 GCACACATAGTGCTATAGTAAATCGCACACATAGAGCCATAGCAAATC
* * * **
75917312 GCACACATAGTGCCATAGTGAATCGCACACATAGTGCCATAG-TGATC
1 GCACACATAGTGCTATAGTAAATCGCACACATAGAGCCATAGCAAATC
*
75917359 GCACACATAGTGCCATAGTAAATCGCACACATAG
1 GCACACATAGTGCTATAGTAAATCGCACACATAG
75917393 TGCATTTGAG
Statistics
Matches: 113, Mismatches: 15, Indels: 3
0.86 0.11 0.02
Matches are distributed among these distances:
47 36 0.32
48 73 0.65
49 4 0.04
ACGTcount: A:0.34, C:0.24, G:0.19, T:0.23
Consensus pattern (48 bp):
GCACACATAGTGCTATAGTAAATCGCACACATAGAGCCATAGCAAATC
Found at i:75917389 original size:71 final size:72
Alignment explanation
Indices: 75917238--75917395 Score: 237
Period size: 71 Copynumber: 2.2 Consensus size: 72
75917228 CTTATTATGT
* * * * *
75917238 TCGCACACATAGAGCTATAGCAAATCGCACACGTAGTGCTATAGTAAATCGCACACTTAGTGCCA
1 TCGCACACATAGTGCCATAGCAAATCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCA
75917303 TAGTAAA
66 TAGTAAA
** *
75917310 TCGCACACATAGTGCCATAGTGAATCGCACACATAGTGCCATAGT-GATCGCACACATAGTGCCA
1 TCGCACACATAGTGCCATAGCAAATCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCA
75917374 TAGTAAA
66 TAGTAAA
75917381 TCGCACACATAGTGC
1 TCGCACACATAGTGC
75917396 ATTTGAGATA
Statistics
Matches: 78, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
71 39 0.50
72 39 0.50
ACGTcount: A:0.34, C:0.25, G:0.19, T:0.22
Consensus pattern (72 bp):
TCGCACACATAGTGCCATAGCAAATCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCA
TAGTAAA
Found at i:75921152 original size:51 final size:51
Alignment explanation
Indices: 75921048--75921179 Score: 151
Period size: 51 Copynumber: 2.6 Consensus size: 51
75921038 GGATACCCGA
* * * *
75921048 TGGCCTGCACATAGTACCACCCTTGT-AGCCAAAGCTACCTTCTTTACAAAG
1 TGGCCTGCACATAGTACCACACTTGTGA-TCAAAACCACCTTCTTTACAAAG
* * *
75921099 TGGCCTTCACATAGTACCACACTTGTGATCAAAACCATC-TCTTATACATAG
1 TGGCCTGCACATAGTACCACACTTGTGATCAAAACCACCTTCTT-TACAAAG
* *
75921150 TGGCCTGCACTTAGTACCACACATGTGATC
1 TGGCCTGCACATAGTACCACACTTGTGATC
75921180 GAAGCTATCG
Statistics
Matches: 69, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
50 4 0.06
51 64 0.93
52 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.27
Consensus pattern (51 bp):
TGGCCTGCACATAGTACCACACTTGTGATCAAAACCACCTTCTTTACAAAG
Found at i:75921207 original size:51 final size:50
Alignment explanation
Indices: 75921147--75921280 Score: 151
Period size: 50 Copynumber: 2.7 Consensus size: 50
75921137 CTCTTATACA
* * * ***
75921147 TAGTGGCCTGCACTTAGTACCACACATGTGATCGAAGCTATCGGGTACGTT
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCGAAGC-ATCGGGTACACG
* * * * *
75921198 TAGTAGCCTGCACTTAATACTACACATGCGACCTAATCATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCGAAGCATCGGGTACACG
*
75921248 TAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACATGTGACC
75921281 TAAAACCATT
Statistics
Matches: 69, Mismatches: 14, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
50 38 0.55
51 31 0.45
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCGAAGCATCGGGTACACG
Found at i:75925194 original size:40 final size:40
Alignment explanation
Indices: 75925104--75925364 Score: 289
Period size: 40 Copynumber: 6.5 Consensus size: 40
75925094 CTCAAGTAAT
* * * *
75925104 CTTCGGGATTTAG-CCGGATATA-ACTACTTGCAC-AAGGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * *
75925142 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCACAGATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
75925182 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * *
75925222 CTTCGGGTCTTAGCCCGGTTATAATCGCTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
75925262 CTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * *
75925302 CTTC-GGATCTTAGTCCGGTTATAGTCACCTAGCACAAAAGC
1 CTTCGGGA-CTTAGCCCGGATATAGTCA-CTAGCACAAATGC
75925343 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
75925365 CATTCGAATA
Statistics
Matches: 188, Mismatches: 27, Indels: 13
0.82 0.12 0.06
Matches are distributed among these distances:
38 11 0.06
39 18 0.10
40 129 0.69
41 27 0.14
42 3 0.02
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:75925235 original size:80 final size:80
Alignment explanation
Indices: 75925104--75925364 Score: 330
Period size: 80 Copynumber: 3.3 Consensus size: 80
75925094 CTCAAGTAAT
* * * * * * *
75925104 CTTCGGGATTTAG-CCGGATATAACTACTTGCAC-AAGGCCTTCGGGTCTTAGCCCGGATATGGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGTTATAGT
*
75925167 CACTAGCACAGATGC
66 CACTAGCACAAATGC
* *
75925182 CTTCGGGACTTAGCCCGGATATAGTC-GCTAGCACAAATGCCTTCGGGTCTTAGCCCGGTTATAA
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGTTATAG
*
75925246 TCGCTAGCACAAATGC
65 TCACTAGCACAAATGC
* * * * *
75925262 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACGAATGCCTTCGGATCTTAGTCCGGTTATAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGTTATAGT
*
75925327 CACCTAGCACAAAAGC
66 CA-CTAGCACAAATGC
75925343 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
75925365 CATTCGAATA
Statistics
Matches: 158, Mismatches: 20, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
78 12 0.08
79 16 0.10
80 97 0.61
81 33 0.21
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.25
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGTTATAGT
CACTAGCACAAATGC
Found at i:75926084 original size:2 final size:2
Alignment explanation
Indices: 75926077--75926102 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
75926067 ATGTGCAAAC
75926077 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
75926103 GTGCAAGAGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:75934059 original size:40 final size:39
Alignment explanation
Indices: 75934014--75934143 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
75934004 CGGAATATAA
75934014 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
75934054 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
75934094 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
75934134 CCGGATATAA
1 CCGGATATAA
75934144 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:75934158 original size:40 final size:40
Alignment explanation
Indices: 75934030--75934181 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
75934020 ATAACCATGT
* * *
75934030 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
75934070 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
75934110 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
75934150 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
75934182 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:75934164 original size:80 final size:80
Alignment explanation
Indices: 75934030--75934179 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
75934020 ATAACCATGT
*
75934030 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
75934094 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
75934110 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
75934173 CCCGGAT
64 CCCGGAT
75934180 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:75940839 original size:27 final size:27
Alignment explanation
Indices: 75940797--75941047 Score: 353
Period size: 27 Copynumber: 9.4 Consensus size: 27
75940787 GTGCCAAGAC
*
75940797 CCCTTATGTGGCAAAATGACTGTTTTG
1 CCCTTATGTGGTAAAATGACTGTTTTG
75940824 CCCTTATGTGGTAAAATGACTGTTTTG
1 CCCTTATGTGGTAAAATGACTGTTTTG
*
75940851 CCC-T-TGTGTTAAAATGACTGTTTTG
1 CCCTTATGTGGTAAAATGACTGTTTTG
*
75940876 CCCTTATGTGGTAAAATGACTATTTTG
1 CCCTTATGTGGTAAAATGACTGTTTTG
* * *
75940903 CCCTTATATGGTAAAATGACTATTTAG
1 CCCTTATGTGGTAAAATGACTGTTTTG
* *
75940930 CCCTTATATGGTAAAATGACTATTTTG
1 CCCTTATGTGGTAAAATGACTGTTTTG
* *
75940957 CCCTTATGTGGTAAAATAACTATTTTG
1 CCCTTATGTGGTAAAATGACTGTTTTG
* *
75940984 CCTTTATGTGGTAAAATGACTGTTTCG
1 CCCTTATGTGGTAAAATGACTGTTTTG
* *
75941011 CCCTTATATGGTAAATTGACTGTTTTG
1 CCCTTATGTGGTAAAATGACTGTTTTG
*
75941038 CCCATATGTG
1 CCCTTATGTG
75941048 ATATATGTTT
Statistics
Matches: 203, Mismatches: 19, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
25 23 0.11
26 2 0.01
27 178 0.88
ACGTcount: A:0.25, C:0.16, G:0.19, T:0.40
Consensus pattern (27 bp):
CCCTTATGTGGTAAAATGACTGTTTTG
Found at i:75942486 original size:43 final size:43
Alignment explanation
Indices: 75942375--75942522 Score: 126
Period size: 43 Copynumber: 3.4 Consensus size: 43
75942365 AATGCTAACG
* * **
75942375 TCCCAGACGTGGTCTTACATGT-AATCAAATATCAATAACACTA
1 TCCCAGACATGGTCTTACATGTAAATCAAATATCGATGCCA-TA
* *
75942418 TCCCAAACA-GGATCTTACACG-AAATCAAATA-CGATGCCGATA
1 TCCCAGACATGG-TCTTACATGTAAATCAAATATCGATGCC-ATA
* *
75942460 TCCCAGACATGGTCTTACATGTAAATCACAA-ATTGATGCCAATG
1 TCCCAGACATGGTCTTACATGTAAATCA-AATATCGATGCC-ATA
* *
75942504 TCACAGACGTGGTCTTACA
1 TCCCAGACATGGTCTTACA
75942523 CGAAAACACA
Statistics
Matches: 85, Mismatches: 13, Indels: 13
0.77 0.12 0.12
Matches are distributed among these distances:
42 24 0.28
43 34 0.40
44 27 0.32
ACGTcount: A:0.36, C:0.24, G:0.15, T:0.25
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACATGTAAATCAAATATCGATGCCATA
Found at i:75943391 original size:50 final size:50
Alignment explanation
Indices: 75943265--75943599 Score: 321
Period size: 50 Copynumber: 6.7 Consensus size: 50
75943255 ATCCGTTGTG
* * * * * * *
75943265 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGTTAACTT
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAGCTA
* * * * *
75943315 CGATCATGTGTGTAGTACTAAATGCAGGCTACTACGTGTATCATATGGCTA
1 AG-TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAGCTA
* * *
75943366 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTA-CTAGATTGATA
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATC-AGATAGCTA
* * * * * * * * * * *
75943416 GGTCGCATGTGTAGTACTAAGTGCAGTCTACTATGCGTACCCGTTAACTT
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAGCTA
* * *
75943466 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTA
1 AG-TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAGCTA
* * *
75943517 AGTCACGTGTGTAGTACTAAGTGCAGGATACTACGTGTATCAGATTGATA
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAGCTA
* * *
75943567 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTA
75943600 TACGTACCAG
Statistics
Matches: 230, Mismatches: 51, Indels: 8
0.80 0.18 0.03
Matches are distributed among these distances:
49 1 0.00
50 153 0.67
51 76 0.33
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (50 bp):
AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAGCTA
Found at i:75943549 original size:101 final size:101
Alignment explanation
Indices: 75943368--75943549 Score: 276
Period size: 101 Copynumber: 1.8 Consensus size: 101
75943358 TATGGCTAAG
* * * *
75943368 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACTAGATTGATAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATGGATAAGTCACATGTGTAGTAC
**
75943433 TAAGTGCAGTCTACTATGCGTACCCGTTAACTTCGA
66 TAAGTGCAGGATACTATGCGTACCCGTTAACTTCGA
* *
75943469 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TCAGATGGTTAAGTCACGTGTGTAGTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACT-AGATGGATAAGTCACATGTGTAGTA
75943533 CTAAGTGCAGGATACTA
65 CTAAGTGCAGGATACTA
75943550 CGTGTATCAG
Statistics
Matches: 72, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
100 1 0.01
101 71 0.99
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.31
Consensus pattern (101 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATGGATAAGTCACATGTGTAGTAC
TAAGTGCAGGATACTATGCGTACCCGTTAACTTCGA
Found at i:75943618 original size:151 final size:151
Alignment explanation
Indices: 75943272--75943607 Score: 584
Period size: 151 Copynumber: 2.2 Consensus size: 151
75943262 GTGAGTCACG
*
75943272 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGATCATGTGTGTAGTACTAAA
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGATCACGTGTGTAGTACTAAA
* * *
75943337 TGCAGGCTACTACGTGTATCATATGGCTAAGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGT
66 TGCAGGCTACTACGTGTATCAGATGGCTAAGTCACGTGTGTAGTACTAAGTGCAGGATACTACGT
75943402 GTACTAGATTGATAGGTCGCA
131 GTACTAGATTGATAGGTCGCA
* *
75943423 TGTGTAGTACTAAGTGCAGTCTACTATGCGTACCCGTTAACTTCGATCACGTGTGTAGTACTAAG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGATCACGTGTGTAGTACTAAA
*
75943488 TGCAGGCTACTACGTGTATCAGATGGTTAAGTCACGTGTGTAGTACTAAGTGCAGGATACTACGT
66 TGCAGGCTACTACGTGTATCAGATGGCTAAGTCACGTGTGTAGTACTAAGTGCAGGATACTACGT
75943553 GTA-TCAGATTGATAGGTCGCA
131 GTACT-AGATTGATAGGTCGCA
*
75943574 TGTGTAGTACTAAGTGCAGGCTACTATACGTACC
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACC
75943608 AGAGAGCTTC
Statistics
Matches: 175, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
150 1 0.01
151 174 0.99
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (151 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGATCACGTGTGTAGTACTAAA
TGCAGGCTACTACGTGTATCAGATGGCTAAGTCACGTGTGTAGTACTAAGTGCAGGATACTACGT
GTACTAGATTGATAGGTCGCA
Found at i:75950738 original size:20 final size:21
Alignment explanation
Indices: 75950713--75950760 Score: 64
Period size: 20 Copynumber: 2.3 Consensus size: 21
75950703 CTATCACAAA
75950713 CACATAGTTCA-AATACATTT-
1 CACATA-TTCACAATACATTTG
*
75950733 CACATATTCACAATTCATTTG
1 CACATATTCACAATACATTTG
75950754 CACATAT
1 CACATAT
75950761 AGCATATTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
19 4 0.16
20 14 0.56
21 7 0.28
ACGTcount: A:0.38, C:0.23, G:0.04, T:0.35
Consensus pattern (21 bp):
CACATATTCACAATACATTTG
Found at i:75951097 original size:44 final size:42
Alignment explanation
Indices: 75950962--75951123 Score: 141
Period size: 43 Copynumber: 3.8 Consensus size: 42
75950952 AGCTAGCACA
* * * *
75950962 ATGCCAACGTCCCAGACATGGTCTTACATGCAATCAAATAACG
1 ATGCCAACATCCGAGACATGGTCTTACACGAAATCAAAT-ACG
** * * * *
75951005 GCGCC-ACTGTCCTAAACAGGGTCTTACACGAAATCAAATACG
1 ATGCCAAC-ATCCGAGACATGGTCTTACACGAAATCAAATACG
*
75951047 ATGCCAACATTCC-AGACATGGTCTTACATGTAAATCATAAGT-CG
1 ATGCCAACA-TCCGAGACATGGTCTTACACG-AAATCA-AA-TACG
*
75951091 ATGCCAACATCCGAGACGTGGTCTTACACGAAA
1 ATGCCAACATCCGAGACATGGTCTTACACGAAA
75951124 ACACATATCG
Statistics
Matches: 97, Mismatches: 15, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
42 22 0.23
43 46 0.47
44 28 0.29
45 1 0.01
ACGTcount: A:0.34, C:0.27, G:0.18, T:0.22
Consensus pattern (42 bp):
ATGCCAACATCCGAGACATGGTCTTACACGAAATCAAATACG
Found at i:75955593 original size:40 final size:39
Alignment explanation
Indices: 75955404--75955611 Score: 204
Period size: 40 Copynumber: 5.2 Consensus size: 39
75955394 TCTTCGGAAT
* *
75955404 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGGTC
* * * * * *
75955443 TTAACCTGGATTTGGTA-ACTTGCACAAATGCCTTCGGCTC
1 TTAGCCCGGATAT--AACACTAGCACAAATGCCTTCGGGTC
* *
75955483 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAAC-ACTAGCACAAATGCCTTCGGGTC
* * *
75955523 TTAGCCCGAATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAAC-ACTAGCACAAATGCCTTCGGGTC
* * *
75955563 TTAGCCCGGATATAATCACTAGCATAAATGCCTTTGGGAC
1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGGTC
75955603 TTAGCCCGG
1 TTAGCCCGG
75955612 GTATCATTCA
Statistics
Matches: 141, Mismatches: 22, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
38 1 0.01
39 3 0.02
40 135 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
TTAGCCCGGATATAACACTAGCACAAATGCCTTCGGGTC
Found at i:75959247 original size:40 final size:42
Alignment explanation
Indices: 75959160--75959261 Score: 136
Period size: 40 Copynumber: 2.5 Consensus size: 42
75959150 TGCATACTAT
* *
75959160 ATCTGAGATGGGCTAAGGCCCTAATATATATGTCTTATTCTGT
1 ATCTGAG-TGGGCTAAGGCCCTAATATATATGTCTGATTCTGC
* * *
75959203 ATCTGATTGGGCTAAGGCCCTAGTATAT-T-TCTGATTTTGC
1 ATCTGAGTGGGCTAAGGCCCTAATATATATGTCTGATTCTGC
75959243 ATCTGAGTGGGCTAAGGCC
1 ATCTGAGTGGGCTAAGGCC
75959262 GGCACTGATT
Statistics
Matches: 53, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
40 26 0.49
41 1 0.02
42 20 0.38
43 6 0.11
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.35
Consensus pattern (42 bp):
ATCTGAGTGGGCTAAGGCCCTAATATATATGTCTGATTCTGC
Found at i:75960968 original size:40 final size:39
Alignment explanation
Indices: 75960850--75960975 Score: 130
Period size: 40 Copynumber: 3.2 Consensus size: 39
75960840 TTCGAATGAT
*
75960850 ATCCGGGCTAAG-TCCCGAAGGCTTT-GTGCTAAGTGACTAA
1 ATCCGGACTAAGAT-CCGAAGGCTTTCGTGC-AAGT-ACTAA
* * * * *
75960890 ATCCGGACTAAGATCTGACGGCATACGTGCGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGCTTTCGTGCAAG-TACTAA
*
75960930 ATCCGGACTAAGATCCGAAGGCTTTCGAGCAAGCTACTAA
1 ATCCGGACTAAGATCCGAAGGCTTTCGTGCAAG-TACTAA
75960970 ATCCGG
1 ATCCGG
75960976 GTTGAGTCCC
Statistics
Matches: 70, Mismatches: 13, Indels: 6
0.79 0.15 0.07
Matches are distributed among these distances:
40 64 0.91
41 6 0.09
ACGTcount: A:0.29, C:0.24, G:0.25, T:0.22
Consensus pattern (39 bp):
ATCCGGACTAAGATCCGAAGGCTTTCGTGCAAGTACTAA
Found at i:75961028 original size:80 final size:80
Alignment explanation
Indices: 75960850--75961037 Score: 197
Period size: 80 Copynumber: 2.3 Consensus size: 80
75960840 TTCGAATGAT
* * *
75960850 ATCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCTGACGGCATA
1 ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
75960915 CGTGCGAGTTACTAA
66 CGTGCGAGTTACTAA
* ** *
75960930 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGC-AAGCT-ACTAAATCCGGGTTGAG-TCCCGAAGG
1 ATCCGGGCTAAG-TCCCGAAGGCTTT-GAGCTAAG-TGACTAAATCCGGACTAAGAT-CCGAAGG
* *
75960991 CATTCGTGCGAGTTACTGTA
62 CATACGTGCGAGTTACT-AA
*
75961011 A-CCGGGCTATGTCCCGAAGGCATTTGA
1 ATCCGGGCTAAGTCCCGAAGGC-TTTGA
75961038 ATGTGTAGCC
Statistics
Matches: 90, Mismatches: 11, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
79 2 0.02
80 78 0.87
81 10 0.11
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
CGTGCGAGTTACTAA
Found at i:75968039 original size:40 final size:40
Alignment explanation
Indices: 75967960--75968117 Score: 151
Period size: 40 Copynumber: 4.0 Consensus size: 40
75967950 TTCGAATGAT
* * * *
75967960 ATCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTAA
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGC-GAGTTACTAA
* *
75968000 ATCCGGACTAAGATCCGACGGCATACGTGCGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
* * * *
75968040 ATCCGGACTAAGATCCGAAGGCTTTCGAGCAAGCTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
** *
75968080 ATCCGGGTTGAG-TCCCGAAGGCATTCGTGCGAGTTACT
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACT
75968118 GTAACCGGGC
Statistics
Matches: 96, Mismatches: 19, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 1 0.01
40 89 0.93
41 6 0.06
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
Found at i:75968138 original size:80 final size:80
Alignment explanation
Indices: 75967960--75968147 Score: 206
Period size: 80 Copynumber: 2.3 Consensus size: 80
75967950 TTCGAATGAT
* *
75967960 ATCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGACGGCATA
1 ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
75968025 CGTGCGAGTTACTAA
66 CGTGCGAGTTACTAA
* ** *
75968040 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGC-AAGCT-ACTAAATCCGGGTTGAG-TCCCGAAGG
1 ATCCGGGCTAAG-TCCCGAAGGCTTT-GAGCTAAG-TGACTAAATCCGGACTAAGAT-CCGAAGG
* *
75968101 CATTCGTGCGAGTTACTGTA
62 CATACGTGCGAGTTACT-AA
*
75968121 A-CCGGGCTATGTCCCGAAGGCATTTGA
1 ATCCGGGCTAAGTCCCGAAGGC-TTTGA
75968148 ATGTGTAGCC
Statistics
Matches: 91, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 2 0.02
80 79 0.87
81 10 0.11
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
CGTGCGAGTTACTAA
Found at i:75975152 original size:40 final size:40
Alignment explanation
Indices: 75975073--75975230 Score: 151
Period size: 40 Copynumber: 4.0 Consensus size: 40
75975063 TTCGAATGAT
* * * *
75975073 ATCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTAA
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGC-GAGTTACTAA
* *
75975113 ATCCGGACTAAGATCCGACGGCATACGTGCGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
* * * *
75975153 ATCCGGACTAAGATCCGAAGGCTTTCGAGCAAGCTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
** *
75975193 ATCCGGGTTGAG-TCCCGAAGGCATTCGTGCGAGTTACT
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACT
75975231 GTAACCGGGC
Statistics
Matches: 96, Mismatches: 19, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 1 0.01
40 89 0.93
41 6 0.06
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
Found at i:75975251 original size:80 final size:80
Alignment explanation
Indices: 75975073--75975260 Score: 206
Period size: 80 Copynumber: 2.3 Consensus size: 80
75975063 TTCGAATGAT
* *
75975073 ATCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGACGGCATA
1 ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
75975138 CGTGCGAGTTACTAA
66 CGTGCGAGTTACTAA
* ** *
75975153 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGC-AAGCT-ACTAAATCCGGGTTGAG-TCCCGAAGG
1 ATCCGGGCTAAG-TCCCGAAGGCTTT-GAGCTAAG-TGACTAAATCCGGACTAAGAT-CCGAAGG
* *
75975214 CATTCGTGCGAGTTACTGTA
62 CATACGTGCGAGTTACT-AA
*
75975234 A-CCGGGCTATGTCCCGAAGGCATTTGA
1 ATCCGGGCTAAGTCCCGAAGGC-TTTGA
75975261 ATGTGTAGCC
Statistics
Matches: 91, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 2 0.02
80 79 0.87
81 10 0.11
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
CGTGCGAGTTACTAA
Found at i:75976792 original size:40 final size:42
Alignment explanation
Indices: 75976743--75976846 Score: 115
Period size: 40 Copynumber: 2.5 Consensus size: 42
75976733 AAATTAGTGC
** *
75976743 GGCCTTTAGCCCACTCAGATGTAGAATTAGA-A-ATAT-TCTAG
1 GGCC-TTAGCCCACTCAGATACAGAATCAGACATATATAT-TAG
* *
75976784 GGCCTTAGCCTAATCAGATACAGAATCAGACATATATATTAG
1 GGCCTTAGCCCACTCAGATACAGAATCAGACATATATATTAG
75976826 GGCCTTAGCCCAACTCAGATA
1 GGCCTTAGCCC-ACTCAGATA
75976847 TAGTATGCAG
Statistics
Matches: 52, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
40 21 0.40
41 5 0.10
42 17 0.33
43 9 0.17
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (42 bp):
GGCCTTAGCCCACTCAGATACAGAATCAGACATATATATTAG
Found at i:75984589 original size:17 final size:18
Alignment explanation
Indices: 75984567--75984606 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
75984557 AATTGGGCTG
75984567 TGTGGG-CCACACGGGCA
1 TGTGGGCCCACACGGGCA
*
75984584 TGTGGGCCCACACGGGCT
1 TGTGGGCCCACACGGGCA
75984602 TGTGG
1 TGTGG
75984607 TATTCTAGGC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
17 6 0.29
18 15 0.71
ACGTcount: A:0.12, C:0.28, G:0.42, T:0.17
Consensus pattern (18 bp):
TGTGGGCCCACACGGGCA
Found at i:75986850 original size:42 final size:43
Alignment explanation
Indices: 75986769--75986851 Score: 123
Period size: 43 Copynumber: 2.0 Consensus size: 43
75986759 TCCTAGACGT
* *
75986769 GGTCTTACATGTAATCAAATATCGATGCCACTATCCCAAATAG
1 GGTCTTACATGAAATCAAATATCGATGCCAATATCCCAAATAG
* *
75986812 GGTCTTACATGAAATCATATA-CGATGCCAATGTCCCAAAT
1 GGTCTTACATGAAATCAAATATCGATGCCAATATCCCAAAT
75986852 GTAAATATAT
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
42 17 0.47
43 19 0.53
ACGTcount: A:0.35, C:0.23, G:0.14, T:0.28
Consensus pattern (43 bp):
GGTCTTACATGAAATCAAATATCGATGCCAATATCCCAAATAG
Found at i:75989492 original size:40 final size:40
Alignment explanation
Indices: 75989391--75989611 Score: 205
Period size: 40 Copynumber: 5.5 Consensus size: 40
75989381 TATTCAAATG
* * * *
75989391 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-GAGTGACT
* * *
75989432 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* * ** * *
75989472 ATATCCGGGCCAAAACCCGAAGGCAGCTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* * * * * *
75989512 ATATCTGGGCTAAGTCCCGAAGGCATTTATGCTAGCGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* **
75989552 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCGAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
75989591 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
75989612 ATACTTGGGT
Statistics
Matches: 146, Mismatches: 33, Indels: 5
0.79 0.18 0.03
Matches are distributed among these distances:
37 1 0.01
38 13 0.09
39 14 0.10
40 90 0.62
41 28 0.19
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
Found at i:75998022 original size:46 final size:46
Alignment explanation
Indices: 75997955--75998083 Score: 231
Period size: 46 Copynumber: 2.8 Consensus size: 46
75997945 TGTAACCCGC
* *
75997955 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
75998001 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
75998047 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
75998084 TGCCCAAACA
Statistics
Matches: 80, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 80 1.00
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:75998102 original size:46 final size:45
Alignment explanation
Indices: 75997960--75998102 Score: 130
Period size: 46 Copynumber: 3.1 Consensus size: 45
75997950 CCCGCCCATA
* * * *
75997960 AGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGTTC-GG-A-TCACATACATCCT
** *
75998006 AGTGAACTCGGACTCAACTCAACGAGTTCGGA-CATTTGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATCACATACATCC-T
* *
75998051 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAACATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGAT-CACATACATCCT
75998098 AGTGA
1 AGTGA
75998103 CATGTCACTT
Statistics
Matches: 80, Mismatches: 11, Indels: 12
0.78 0.11 0.12
Matches are distributed among these distances:
42 5 0.06
44 1 0.01
45 2 0.03
46 65 0.81
47 1 0.01
48 6 0.08
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.21
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATCACATACATCCT
Found at i:76000404 original size:38 final size:40
Alignment explanation
Indices: 76000196--76000414 Score: 223
Period size: 40 Copynumber: 5.5 Consensus size: 40
76000186 TATTCAAATG
* * * *
76000196 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-GAGTGACT
* * *
76000237 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* * * *
76000277 ATATCCGGGCCAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* * * *
76000317 ATATCCGGGCTAAG-TCCGAAGGCATTTATGCTAG-GACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* **
76000355 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCGAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
76000394 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
76000415 ATACTTGGGT
Statistics
Matches: 149, Mismatches: 26, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
37 1 0.01
38 37 0.25
39 33 0.22
40 50 0.34
41 28 0.19
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
Found at i:76005779 original size:18 final size:18
Alignment explanation
Indices: 76005756--76005793 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
76005746 TTGCTGCAGT
76005756 AATATTCTGCTTTAAGGC
1 AATATTCTGCTTTAAGGC
*
76005774 AATATTCTGTTTTAAGGC
1 AATATTCTGCTTTAAGGC
76005792 AA
1 AA
76005794 GTTTCAAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.32, C:0.13, G:0.16, T:0.39
Consensus pattern (18 bp):
AATATTCTGCTTTAAGGC
Found at i:76008959 original size:18 final size:18
Alignment explanation
Indices: 76008936--76008975 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
76008926 CATTGCTGCA
76008936 GCAATATTCTGTTTTAAG
1 GCAATATTCTGTTTTAAG
*
76008954 GCAATATTTTGTTTTAAG
1 GCAATATTCTGTTTTAAG
76008972 GCAA
1 GCAA
76008976 GTTTCAAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.30, C:0.10, G:0.17, T:0.42
Consensus pattern (18 bp):
GCAATATTCTGTTTTAAG
Found at i:76011806 original size:47 final size:47
Alignment explanation
Indices: 76011737--76011860 Score: 152
Period size: 45 Copynumber: 2.7 Consensus size: 47
76011727 GCCCCTAAGT
76011737 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACATCTC-A-C
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACATC-CAAGC
* *
76011784 GAACTCGGACTCAACTCAACGAGTTCGGA---CATTCGCATCCATAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACATCCA-AGC
76011829 GAACTCGGACTCAACTCAACGAGTTCGGATGC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGC
76011861 TCAACCATCC
Statistics
Matches: 68, Mismatches: 2, Indels: 13
0.82 0.02 0.16
Matches are distributed among these distances:
42 3 0.04
43 5 0.07
44 2 0.03
45 29 0.43
47 29 0.43
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACATCCAAGC
Found at i:76016293 original size:37 final size:35
Alignment explanation
Indices: 76016243--76016328 Score: 136
Period size: 37 Copynumber: 2.3 Consensus size: 35
76016233 TACGAAGTCT
76016243 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATC-GGTC
76016279 GTACCCGGACATAATCTCCACACGTAGTCATCGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGTC
76016315 TCACCCGGAACATA
1 T-ACCCGG-ACATA
76016329 TTTCCAAGTT
Statistics
Matches: 47, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
35 1 0.02
36 10 0.21
37 36 0.77
ACGTcount: A:0.27, C:0.34, G:0.19, T:0.21
Consensus pattern (35 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGTC
Found at i:76016464 original size:49 final size:49
Alignment explanation
Indices: 76016397--76016597 Score: 350
Period size: 49 Copynumber: 4.1 Consensus size: 49
76016387 TTTACCACAT
* * *
76016397 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
76016446 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
76016495 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
* *
76016544 ATATGTATACATTTTCACATTC-TCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
76016592 ATATAT
1 ATATAT
76016598 TATTATGTAC
Statistics
Matches: 146, Mismatches: 6, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
48 30 0.21
49 116 0.79
ACGTcount: A:0.30, C:0.27, G:0.09, T:0.34
Consensus pattern (49 bp):
ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
Found at i:76020877 original size:40 final size:40
Alignment explanation
Indices: 76020832--76020999 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
76020822 CGGAATATAA
76020832 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
76020872 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
76020912 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
76020952 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
76020992 CCGGATAT
1 CCGGATAT
76021000 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:76023054 original size:29 final size:28
Alignment explanation
Indices: 76022999--76023102 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 28
76022989 GTTAGCATTA
* * *
76022999 ATATGAATGTGACTGGGCCTAACGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
76023027 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* * *
76023056 ATATACAGGTGTTTTGGGCCTAATGGGCC
1 ATATAAATGTG-ATTGGGCCTAATGGGCC
* *
76023085 ATATGAATATGATTGGGC
1 ATATAAATGTGATTGGGC
76023103 TTACTAGGCC
Statistics
Matches: 63, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
28 17 0.27
29 46 0.73
ACGTcount: A:0.26, C:0.15, G:0.30, T:0.29
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATGGGCC
Found at i:76023084 original size:58 final size:57
Alignment explanation
Indices: 76023012--76023122 Score: 150
Period size: 58 Copynumber: 1.9 Consensus size: 57
76023002 TGAATGTGAC
* * *
76023012 TGGGCCTAACGGGCCATATAAATGTGATTTGGGCCTAATGGGCCATATACAGGTGTTT
1 TGGGCCTAACGGGCCATATAAATATGA-TTGGGCCTAATAGGCCAGATACAGGTGTTT
* * * *
76023070 TGGGCCTAATGGGCCATATGAATATGATTGGGCTTACTAGGCCAGATACAGGT
1 TGGGCCTAACGGGCCATATAAATATGATTGGGCCTAATAGGCCAGATACAGGT
76023123 ATGTGAATTT
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
57 22 0.48
58 24 0.52
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (57 bp):
TGGGCCTAACGGGCCATATAAATATGATTGGGCCTAATAGGCCAGATACAGGTGTTT
Found at i:76026568 original size:39 final size:40
Alignment explanation
Indices: 76026524--76026770 Score: 268
Period size: 40 Copynumber: 6.2 Consensus size: 40
76026514 CCTTCGGAGT
** ** *
76026524 TTAG-CCGGATATAGCCACTAGCTTAAATGCCTTCGGTAC
1 TTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGAC
* *
76026563 TTAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGAC
* *
76026603 TTAGCCCGG-TATAATAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGAC
* * * *
76026642 TTAGCCCGGATATAATAGCTCGCACAAACGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGAC
* * *
76026682 TTAGCCCGGATATAGTAGCTCGCACGAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGAC
* ** *
76026722 TTAGCCCAGA-ATTAGCCACTAGCTCAAATG-CTCTCGGGAC
1 TTAGCCCGGATA-TAGTAACTAGCACAAATGCCT-TCGGGAC
76026762 TTAGCCCGG
1 TTAGCCCGG
76026771 TTATCATCCG
Statistics
Matches: 182, Mismatches: 22, Indels: 7
0.86 0.10 0.03
Matches are distributed among these distances:
39 44 0.24
40 138 0.76
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGAC
Found at i:76026592 original size:40 final size:40
Alignment explanation
Indices: 76026548--76026728 Score: 274
Period size: 40 Copynumber: 4.5 Consensus size: 40
76026538 CCACTAGCTT
* * * *
76026548 AAATGCCTTCGGTACTTAGCCCGGTTATAGTAACTTGCAC
1 AAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCAC
76026588 AAATGCCTTCGGGACTTAGCCCGG-TATAATAACTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCAC
*
76026627 AAATGCCTTCGGGACTTAGCCCGGATATAATAGCTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCAC
* * *
76026667 AAACGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCAC
*
76026707 GAATGCCTTCGGGACTTAGCCC
1 AAATGCCTTCGGGACTTAGCCC
76026729 AGAATTAGCC
Statistics
Matches: 132, Mismatches: 8, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
39 37 0.28
40 95 0.72
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
AAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCAC
Found at i:76026645 original size:79 final size:78
Alignment explanation
Indices: 76026548--76026771 Score: 270
Period size: 79 Copynumber: 2.8 Consensus size: 78
76026538 CCACTAGCTT
* *
76026548 AAATGCCTTCGGTACTTAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGT
1 AAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGT
76026613 ATAATAACTCGCAC
65 ATAATAACTCGCAC
* * * *
76026627 AAATGCCTTCGGGACTTAGCCCGGATATAATAGCTCGCACAAACGCCTTCGGGACTTAGCCCGGA
1 AAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGG-
* *
76026692 TATAGTAGCTCGCAC
64 TATAATAACTCGCAC
* * * ** *
76026707 GAATGCCTTCGGGACTTAGCCCAGAATTAGCCACTAGCTCAAATG-CTCTCGGGACTTAGCCCGG
1 AAATGCCTTCGGGACTTAGCCCGGTA-TAGTAACTAGCACAAATGCCT-TCGGGACTTAGCCCGG
76026771 T
64 T
76026772 TATCATCCGA
Statistics
Matches: 124, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
79 62 0.50
80 62 0.50
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (78 bp):
AAATGCCTTCGGGACTTAGCCCGGTATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGTA
TAATAACTCGCAC
Found at i:76034724 original size:40 final size:39
Alignment explanation
Indices: 76034680--76034904 Score: 272
Period size: 40 Copynumber: 5.7 Consensus size: 39
76034670 GCCACTAGCT
*
76034680 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
* * *
76034720 CAAATGCCTTTGGGACTTAGCCCGGTATAATAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
* *
76034759 CAAATGCCTTCGGGACTTAGCCCGGATATAATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
* *
76034799 CAAACGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
* * ** * *
76034839 CGAATGCCTTCGGGACTTAGCCCGGAATTAGCCACTAGCT
1 CAAATGCCTTCGGGACTTAGCCCGGTA-TAGTAACTCGCA
76034879 CAAATG-CTCTCGGGACTTAGCCCGGT
1 CAAATGCCT-TCGGGACTTAGCCCGGT
76034905 TATCATCCGA
Statistics
Matches: 163, Mismatches: 19, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
39 38 0.23
40 125 0.77
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
Found at i:76034800 original size:79 final size:80
Alignment explanation
Indices: 76034680--76034864 Score: 273
Period size: 79 Copynumber: 2.3 Consensus size: 80
76034670 GCCACTAGCT
* * * * *
76034680 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCACAAATGCCTTTGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACGCCTTCGGGACTTAGCCCGG
76034745 -TATAATAACTCACA
66 ATATAATAACTCACA
*
76034759 CAAATGCCTTCGGGACTTAGCCCGGATATAATAGCTCGCACAAACGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACGCCTTCGGGACTTAGCCCGG
* * *
76034824 ATATAGTAGCTCGCA
66 ATATAATAACTCACA
*
76034839 CGAATGCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
76034865 ATTAGCCACT
Statistics
Matches: 95, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
79 59 0.62
80 36 0.38
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACGCCTTCGGGACTTAGCCCGG
ATATAATAACTCACA
Found at i:76038765 original size:25 final size:25
Alignment explanation
Indices: 76038703--76038785 Score: 107
Period size: 25 Copynumber: 3.4 Consensus size: 25
76038693 CTGGAGGCCT
76038703 AGCCTCTTTTAAT-AACTGGGGC-AA
1 AGCC-CTTTTAATAAACTGGGGCAAA
* * *
76038727 AGCCCTATTGATAAACTAGGGCAAA
1 AGCCCTTTTAATAAACTGGGGCAAA
*
76038752 AGCCCTTTTAATAAACTGGGGAAAA
1 AGCCCTTTTAATAAACTGGGGCAAA
76038777 AGCCCTTTT
1 AGCCCTTTT
76038786 TGCACTTCCT
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
23 6 0.12
24 12 0.24
25 32 0.64
ACGTcount: A:0.34, C:0.20, G:0.19, T:0.27
Consensus pattern (25 bp):
AGCCCTTTTAATAAACTGGGGCAAA
Found at i:76038856 original size:20 final size:20
Alignment explanation
Indices: 76038833--76038879 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
76038823 TTATGAATAC
76038833 ATCATGTGCATATCATA-CA
1 ATCATGTGCATATCATATCA
76038852 TATCATGTGCATATCATATCA
1 -ATCATGTGCATATCATATCA
76038873 ATCATGT
1 ATCATGT
76038880 ATATCAAACC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 24 0.92
21 2 0.08
ACGTcount: A:0.34, C:0.19, G:0.11, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATATCA
Found at i:76038942 original size:25 final size:25
Alignment explanation
Indices: 76038914--76038961 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
76038904 ATAATTAAAC
* * *
76038914 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATAGTCATTTTTA
76038939 CCTAGGGGCAAAATAGTCATTTT
1 CCTAGGGGCAAAATAGTCATTTT
76038962 CATAATATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATAGTCATTTTTA
Found at i:76049341 original size:72 final size:72
Alignment explanation
Indices: 76049207--76049367 Score: 200
Period size: 72 Copynumber: 2.2 Consensus size: 72
76049197 AACAAGTCTG
* * * ***
76049207 TACACAAAGTCAGCACCCGGACCCCAAAGCATTATCATGTAATGTCCACTCATTGAGCTACTCAC
1 TACACAAAGTCAGTACCCGGACCCCAAAGCATTAGCATATAATGTCCACTCAGCAAGCTACTCAC
76049272 GGGTTTA
66 GGGTTTA
* *
76049279 TACACAAAGTCAGTACCCGGACCCCAAAGCATTAGCATA-ATATG-CTCGCTCAGCAAGTTACTC
1 TACACAAAGTCAGTACCCGGACCCCAAAGCATTAGCATATA-ATGTC-CACTCAGCAAGCTACTC
*
76049342 ATGGGTTTA
64 ACGGGTTTA
*
76049351 CACACAAAGTCAGTACC
1 TACACAAAGTCAGTACC
76049368 TGAACCCACA
Statistics
Matches: 77, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
71 2 0.03
72 75 0.97
ACGTcount: A:0.32, C:0.29, G:0.17, T:0.22
Consensus pattern (72 bp):
TACACAAAGTCAGTACCCGGACCCCAAAGCATTAGCATATAATGTCCACTCAGCAAGCTACTCAC
GGGTTTA
Found at i:76053598 original size:2 final size:2
Alignment explanation
Indices: 76053591--76053617 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
76053581 CTTGACTCTC
76053591 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
76053618 CAGACATATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:76060655 original size:8 final size:8
Alignment explanation
Indices: 76060642--76060689 Score: 69
Period size: 8 Copynumber: 6.0 Consensus size: 8
76060632 CTAGATCGGC
76060642 AAAAGCCG
1 AAAAGCCG
76060650 AAAAGCCG
1 AAAAGCCG
*
76060658 AAATGCCG
1 AAAAGCCG
76060666 AAAAGCCG
1 AAAAGCCG
* *
76060674 AAATGCCA
1 AAAAGCCG
76060682 AAAAGCCG
1 AAAAGCCG
76060690 GTATTTTGGG
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
8 34 1.00
ACGTcount: A:0.48, C:0.25, G:0.23, T:0.04
Consensus pattern (8 bp):
AAAAGCCG
Found at i:76060667 original size:16 final size:16
Alignment explanation
Indices: 76060646--76060689 Score: 79
Period size: 16 Copynumber: 2.8 Consensus size: 16
76060636 ATCGGCAAAA
76060646 GCCGAAAAGCCGAAAT
1 GCCGAAAAGCCGAAAT
76060662 GCCGAAAAGCCGAAAT
1 GCCGAAAAGCCGAAAT
*
76060678 GCCAAAAAGCCG
1 GCCGAAAAGCCG
76060690 GTATTTTGGG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.43, C:0.27, G:0.25, T:0.05
Consensus pattern (16 bp):
GCCGAAAAGCCGAAAT
Found at i:76060975 original size:28 final size:28
Alignment explanation
Indices: 76060935--76061024 Score: 135
Period size: 28 Copynumber: 3.2 Consensus size: 28
76060925 ATGTACTAGA
76060935 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
76060963 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
** * * *
76060991 ATACCATTGTGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATTACCATT
76061019 ATACCC
1 ATACCC
76061025 TTAGGGTTAA
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 56 1.00
ACGTcount: A:0.34, C:0.24, G:0.09, T:0.32
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATTACCATT
Found at i:76061190 original size:27 final size:27
Alignment explanation
Indices: 76061132--76061221 Score: 110
Period size: 28 Copynumber: 3.2 Consensus size: 27
76061122 AGGAAGCGTC
76061132 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
76061160 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
*
76061187 CTGGTGGCACTGCCACAAAATATCTATAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
76061216 CTGGTG
1 CTGGTG
76061222 ACTCTGTCAC
Statistics
Matches: 54, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
27 23 0.43
28 24 0.44
29 7 0.13
ACGTcount: A:0.21, C:0.24, G:0.22, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:76061232 original size:29 final size:28
Alignment explanation
Indices: 76061142--76061232 Score: 85
Period size: 27 Copynumber: 3.2 Consensus size: 28
76061132 CTGGTGGCTA
* * * *
76061142 TGCCACAAATTATCTGTTCTGGTGGCCC
1 TGCCACAAAATATCTATTCTGGTGACAC
* * *
76061170 TGCCAC-ATATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTATTCTGGTGACAC
*
76061197 TGCCACAAAATATCTATATCTGGTGACTC
1 TGCCACAAAATATCTAT-TCTGGTGACAC
*
76061226 TGTCACA
1 TGCCACA
76061233 TTTTCTGTAT
Statistics
Matches: 53, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
27 24 0.45
28 14 0.26
29 15 0.28
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.32
Consensus pattern (28 bp):
TGCCACAAAATATCTATTCTGGTGACAC
Found at i:76061240 original size:55 final size:56
Alignment explanation
Indices: 76061132--76061246 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 56
76061122 AGGAAGCGTC
* * *
76061132 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTATTCTGGTGACCCTGCCACATATATCTGTAT
* * *
76061187 CTGGTGGC-ACTGCCACAAAATATCTATATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTAT-TCTGGTGACCCTGCCACATATATCTGTAT
76061243 CTGG
1 CTGG
76061247 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.57
56 21 0.41
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTATTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:76065051 original size:23 final size:23
Alignment explanation
Indices: 76065024--76065067 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
76065014 CAATATACAT
76065024 AAACAATTTCTCAATAATACACC
1 AAACAATTTCTCAATAATACACC
76065047 AAACAATTTCTCAATAATACA
1 AAACAATTTCTCAATAATACA
76065068 ACTTCCTAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.50, C:0.23, G:0.00, T:0.27
Consensus pattern (23 bp):
AAACAATTTCTCAATAATACACC
Found at i:76065749 original size:94 final size:93
Alignment explanation
Indices: 76065486--76065794 Score: 313
Period size: 94 Copynumber: 3.3 Consensus size: 93
76065476 TGGGTTAAGT
* * *
76065486 TGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCTTCATCTTGGCCGATACCATGTCC
1 TGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCAT-A-ATTGGCCGAT-GCATGTCC
* * * * * *
76065551 CAGACATGGTATTACACTAGCTCTCATGTATAA
63 TAGACA-CGTCTTACACTAGCACTCATCTCT-A
* * * *
76065584 GTGCTGATG-CATGTCCCAGACAT-GTCTTACACTAGC-ATGA-AGCTTAGCCGATGCATGTCCT
1 -TGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATA-ATTGGCCGATGCATGTCCT
*
76065645 AGACACGTCTTACACTGGCACTCATCTCTA
64 AGACACGTCTTACACTAGCACTCATCTCTA
* * * *
76065675 CGCTGATGCCATGTCCTAGACATGGTCTTACACTGGCTATCATAATGTGGCTGATGCATATCCTA
1 TGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAAT-TGGCCGATGCATGTCCTA
* * *
76065740 GACACGTCTTACACTAGCCCTCGTCTCAA
65 GACACGTCTTACACTAGCACTCATCTCTA
76065769 TG-TCGATGCCATGTCCCAGACATGGT
1 TGCT-GATGCCATGTCCCAGACATGGT
76065795 GTGACAGCCC
Statistics
Matches: 177, Mismatches: 27, Indels: 17
0.80 0.12 0.08
Matches are distributed among these distances:
90 7 0.04
91 14 0.08
92 30 0.17
93 17 0.10
94 73 0.41
96 2 0.01
97 12 0.07
98 14 0.08
99 8 0.05
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (93 bp):
TGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAATTGGCCGATGCATGTCCTAG
ACACGTCTTACACTAGCACTCATCTCTA
Found at i:76067440 original size:29 final size:29
Alignment explanation
Indices: 76067407--76067557 Score: 176
Period size: 29 Copynumber: 5.5 Consensus size: 29
76067397 GTGACGAGAT
76067407 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
76067436 TGGCACTAAGCGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
76067465 TGGCACTAAGTGTGCGTGCTGG--A-A-A
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
76067490 T---ACTTA--GTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * *
76067514 AGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* *
76067543 TGACACTATGTGTGC
1 TGGCACTAAGTGTGC
76067558 AAGTTGGAAA
Statistics
Matches: 103, Mismatches: 10, Indels: 18
0.79 0.08 0.14
Matches are distributed among these distances:
20 11 0.11
22 5 0.05
23 1 0.01
24 1 0.01
25 2 0.02
26 1 0.01
27 5 0.05
29 77 0.75
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:76067566 original size:78 final size:78
Alignment explanation
Indices: 76067418--76067567 Score: 219
Period size: 78 Copynumber: 1.9 Consensus size: 78
76067408 GGCACTAAGT
* * * * **
76067418 GTGCGTGCTGGAAATATATGGCACTAAGCGTGCGTGCTGGAAATATATGGCACTAAGTGTGCGTG
1 GTGCGTGCTGGAAATATAAGGCACTAAGCGTGCATGCTGGAAAAATATGACACTAAGTGTGCAAG
76067483 CTGGAAATACTTA
66 CTGGAAATACTTA
* *
76067496 GTGCGTGCTGGAAATATAAGGCACTAAGTGTGCATGCTGGAAAAATATGACACTATGTGTGCAAG
1 GTGCGTGCTGGAAATATAAGGCACTAAGCGTGCATGCTGGAAAAATATGACACTAAGTGTGCAAG
*
76067561 TTGGAAA
66 CTGGAAA
76067568 AATACGGCAC
Statistics
Matches: 63, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
78 63 1.00
ACGTcount: A:0.30, C:0.14, G:0.30, T:0.26
Consensus pattern (78 bp):
GTGCGTGCTGGAAATATAAGGCACTAAGCGTGCATGCTGGAAAAATATGACACTAAGTGTGCAAG
CTGGAAATACTTA
Found at i:76067586 original size:29 final size:29
Alignment explanation
Indices: 76067502--76067578 Score: 91
Period size: 29 Copynumber: 2.7 Consensus size: 29
76067492 CTTAGTGCGT
* *
76067502 GCTGGAAATATAAGGCACTAAGTGTGCAT
1 GCTGGAAAAATAAGGCACTAAGTGTGCAA
* * *
76067531 GCTGGAAAAATATGACACTATGTGTGCAA
1 GCTGGAAAAATAAGGCACTAAGTGTGCAA
* *
76067560 GTTGGAAAAATACGGCACT
1 GCTGGAAAAATAAGGCACT
76067579 GGGTGTGCGA
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.36, C:0.14, G:0.26, T:0.23
Consensus pattern (29 bp):
GCTGGAAAAATAAGGCACTAAGTGTGCAA
Found at i:76069765 original size:85 final size:85
Alignment explanation
Indices: 76069616--76069786 Score: 317
Period size: 85 Copynumber: 2.0 Consensus size: 85
76069606 TCAAGCTAAC
76069616 ACATTTTTTAAAAGTTGCTTATAACACAACTAGGACTCATATTCCTCCATAAAAACTCAACATCT
1 ACATTTTTTAAAAGTTGCTTATAACACAACTAGGACTCATATTCCTCCATAAAAACTCAACATCT
*
76069681 ATCACAATTACATCCATGGG
66 ATCACAATTACATACATGGG
76069701 ACATTTTTTAAAAGTTGCTTATAACACAACTAGGACTCATATTCCTCCATAAAAACT-AAGCATC
1 ACATTTTTTAAAAGTTGCTTATAACACAACTAGGACTCATATTCCTCCATAAAAACTCAA-CATC
76069765 TATCACAATTACATACATGGG
65 TATCACAATTACATACATGGG
76069786 A
1 A
76069787 AAATCCTAAA
Statistics
Matches: 84, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
84 2 0.02
85 82 0.98
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.30
Consensus pattern (85 bp):
ACATTTTTTAAAAGTTGCTTATAACACAACTAGGACTCATATTCCTCCATAAAAACTCAACATCT
ATCACAATTACATACATGGG
Found at i:76074328 original size:2 final size:2
Alignment explanation
Indices: 76074321--76074347 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
76074311 CAGTTGAACT
76074321 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
76074348 GCGTTTATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:76076763 original size:72 final size:72
Alignment explanation
Indices: 76076592--76076777 Score: 232
Period size: 72 Copynumber: 2.6 Consensus size: 72
76076582 TGCCTGCATT
* * * * *
76076592 TGAGCTACTCACAGGTCTATACACAAAATCAGCACCCGGACCCCAAAGCATTAACATTTAATGTC
1 TGAGCTACTCACGGGTTTATACACAAAGTCAGTACCCGGACCCCAAAGCATTAACATATAATGTC
* *
76076657 CGCTCAT
66 CACTCAA
* *
76076664 TAAGCTACTCACGGGTTTATACACAAAGTCAGTACCCGGACCCCAAAGCATTAGCATGAT-ATG-
1 TGAGCTACTCACGGGTTTATACACAAAGTCAGTACCCGGACCCCAAAGCATTAACAT-ATAATGT
76076727 CTCACTCAA
65 C-CACTCAA
* * *
76076736 TGAGTTACTCACGGGTTTATACACAAAGTTAGTACCTGGACC
1 TGAGCTACTCACGGGTTTATACACAAAGTCAGTACCCGGACC
76076778 GACATTATAT
Statistics
Matches: 99, Mismatches: 13, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
71 1 0.01
72 97 0.98
73 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.24
Consensus pattern (72 bp):
TGAGCTACTCACGGGTTTATACACAAAGTCAGTACCCGGACCCCAAAGCATTAACATATAATGTC
CACTCAA
Found at i:76079929 original size:40 final size:40
Alignment explanation
Indices: 76079726--76079913 Score: 297
Period size: 40 Copynumber: 4.7 Consensus size: 40
76079716 TGAATGATAC
* * *
76079726 CCGGGCTAAGCCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
*
76079766 TCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
76079806 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
*
76079846 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
76079886 CCGGGTTAAGACCCGAAGGCAATTGTGC
1 CCGGGCTAAGACCCGAAGGCATTTGTGC
76079914 TTGTGGTCAT
Statistics
Matches: 139, Mismatches: 8, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
40 137 0.99
41 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:76088444 original size:27 final size:29
Alignment explanation
Indices: 76088414--76088529 Score: 110
Period size: 29 Copynumber: 4.0 Consensus size: 29
76088404 AACGCAAGAG
*
76088414 TATATA-GTGAATC-CGCACACTTAGTGC
1 TATATATGTGAAGCTCGCACACTTAGTGC
* **
76088441 TATATATTTTCAGCTCGCACACTTAGTGC
1 TATATATGTGAAGCTCGCACACTTAGTGC
* **
76088470 TATATAATTTTCAGCTCGCACACTTAGTGC
1 TATAT-ATGTGAAGCTCGCACACTTAGTGC
* ** *
76088500 TATATATTTTCAGTTCGCACACTTAGTGC
1 TATATATGTGAAGCTCGCACACTTAGTGC
76088529 T
1 T
76088530 GTACAATTTT
Statistics
Matches: 81, Mismatches: 5, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
27 6 0.07
28 3 0.04
29 43 0.53
30 29 0.36
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.37
Consensus pattern (29 bp):
TATATATGTGAAGCTCGCACACTTAGTGC
Found at i:76088482 original size:30 final size:29
Alignment explanation
Indices: 76088427--76088529 Score: 188
Period size: 29 Copynumber: 3.5 Consensus size: 29
76088417 ATAGTGAATC
76088427 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
76088456 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATAT-ATTTTCAGCT
*
76088486 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
76088515 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
76088530 GTACAATTTT
Statistics
Matches: 72, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
29 43 0.60
30 29 0.40
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.37
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:76088503 original size:59 final size:60
Alignment explanation
Indices: 76088426--76088559 Score: 207
Period size: 59 Copynumber: 2.2 Consensus size: 60
76088416 TATAGTGAAT
* * *
76088426 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAA-TTTTCAGC
1 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATACAATTTTTAAAC
* * *
76088485 TCGCACACTTAGTGCTATATATTTTCAGTTCGCACACTTAGTGCTGTACAATTTTTAAAC
1 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATACAATTTTTAAAC
76088545 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
76088560 CAATCTTGTC
Statistics
Matches: 67, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
59 47 0.70
60 20 0.30
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.35
Consensus pattern (60 bp):
CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATACAATTTTTAAAC
Found at i:76095978 original size:27 final size:29
Alignment explanation
Indices: 76095948--76096063 Score: 110
Period size: 29 Copynumber: 4.0 Consensus size: 29
76095938 AACGCAAGAG
*
76095948 TATATA-GTGAATC-CGCACACTTAGTGC
1 TATATATGTGAAGCTCGCACACTTAGTGC
* **
76095975 TATATATTTTCAGCTCGCACACTTAGTGC
1 TATATATGTGAAGCTCGCACACTTAGTGC
* **
76096004 TATATAATTTTCAGCTCGCACACTTAGTGC
1 TATAT-ATGTGAAGCTCGCACACTTAGTGC
* ** *
76096034 TATATATTTTCAGTTCGCACACTTAGTGC
1 TATATATGTGAAGCTCGCACACTTAGTGC
76096063 T
1 T
76096064 GTACAATTTT
Statistics
Matches: 81, Mismatches: 5, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
27 6 0.07
28 3 0.04
29 43 0.53
30 29 0.36
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.37
Consensus pattern (29 bp):
TATATATGTGAAGCTCGCACACTTAGTGC
Found at i:76096016 original size:30 final size:29
Alignment explanation
Indices: 76095961--76096063 Score: 188
Period size: 29 Copynumber: 3.5 Consensus size: 29
76095951 ATAGTGAATC
76095961 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
76095990 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATAT-ATTTTCAGCT
*
76096020 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
76096049 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
76096064 GTACAATTTT
Statistics
Matches: 72, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
29 43 0.60
30 29 0.40
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.37
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:76096037 original size:59 final size:60
Alignment explanation
Indices: 76095960--76096093 Score: 207
Period size: 59 Copynumber: 2.2 Consensus size: 60
76095950 TATAGTGAAT
* * *
76095960 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAA-TTTTCAGC
1 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATACAATTTTTAAAC
* * *
76096019 TCGCACACTTAGTGCTATATATTTTCAGTTCGCACACTTAGTGCTGTACAATTTTTAAAC
1 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATACAATTTTTAAAC
76096079 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
76096094 CAATCTTGTC
Statistics
Matches: 67, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
59 47 0.70
60 20 0.30
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.35
Consensus pattern (60 bp):
CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATACAATTTTTAAAC
Found at i:76101454 original size:47 final size:47
Alignment explanation
Indices: 76101382--76101559 Score: 164
Period size: 49 Copynumber: 3.7 Consensus size: 47
76101372 TGGATAAGAT
* * * *
76101382 GTCGATACCACGT-CCAGACATGGTCTTACACTGGCTAGCACATCAAA
1 GTCGATGCCATGTCCCAGACA-GGTCTTACACTGGCTACCATATCAAA
* * * *
76101429 GTCGATGCCATGTCCCAGACAGGTCTTACACTGACTTCCATATATCGAG
1 GTCGATGCCATGTCCCAGACAGGTCTTACACTGGCTACC--ATATCAAA
** **
76101478 GTCGATGCTGTGTCCCAGACAGGTCTTACACTGGCT-CTCATTTATCAGT
1 GTCGATGCCATGTCCCAGACAGGTCTTACACTGGCTAC-CA--TATCAAA
76101527 GTCGATGCCATGTCCCA-AGCAGGTCTTACACTG
1 GTCGATGCCATGTCCCAGA-CAGGTCTTACACTG
76101560 ACACACAACA
Statistics
Matches: 108, Mismatches: 16, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
47 27 0.25
48 9 0.08
49 72 0.67
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (47 bp):
GTCGATGCCATGTCCCAGACAGGTCTTACACTGGCTACCATATCAAA
Found at i:76101492 original size:49 final size:49
Alignment explanation
Indices: 76101429--76101561 Score: 182
Period size: 49 Copynumber: 2.7 Consensus size: 49
76101419 GCACATCAAA
76101429 GTCGATGCCATGTCCCAGACAGGTCTTACACTGACT-TCCATATATCGAG-
1 GTCGATGCCATGTCCCAGACAGGTCTTACACTGACTCT-CATATATC-AGT
** * *
76101478 GTCGATGCTGTGTCCCAGACAGGTCTTACACTGGCTCTCATTTATCAGT
1 GTCGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCAGT
76101527 GTCGATGCCATGTCCCA-AGCAGGTCTTACACTGAC
1 GTCGATGCCATGTCCCAGA-CAGGTCTTACACTGAC
76101562 ACACAACAAG
Statistics
Matches: 74, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
48 3 0.04
49 70 0.95
50 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.22, T:0.28
Consensus pattern (49 bp):
GTCGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCAGT
Found at i:76101699 original size:48 final size:48
Alignment explanation
Indices: 76101580--76101701 Score: 190
Period size: 48 Copynumber: 2.5 Consensus size: 48
76101570 AGCTAACGGA
* * *
76101580 ATGTCCCAGACAGGTCTTACACTAGCTTGTATATCTCGAGGCTGATGC
1 ATGTCCCAGACATGTCTTACACTGGCTGGTATATCTCGAGGCTGATGC
* *
76101628 ATGTCCCAAACATGTCTTACACTGGCTGGTATATCTCGAGGTTGATGC
1 ATGTCCCAGACATGTCTTACACTGGCTGGTATATCTCGAGGCTGATGC
*
76101676 ATGTCCCAGACATGTTTTACACTGGC
1 ATGTCCCAGACATGTCTTACACTGGC
76101702 ACACGTATCA
Statistics
Matches: 67, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 67 1.00
ACGTcount: A:0.23, C:0.25, G:0.22, T:0.30
Consensus pattern (48 bp):
ATGTCCCAGACATGTCTTACACTGGCTGGTATATCTCGAGGCTGATGC
Found at i:76104947 original size:40 final size:40
Alignment explanation
Indices: 76104839--76105085 Score: 275
Period size: 40 Copynumber: 6.2 Consensus size: 40
76104829 TCTTCGGAAT
* * *
76104839 TTAG-CCGGATATAACCACAAGCACAATTGCCTTC-GGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *** *
76104877 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
76104917 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *** * *
76104957 TTAGCCCGGATTTGGTAACTTGAACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
76104997 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
76105037 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
76105077 TTAGCCCGG
1 TTAGCCCGG
76105086 GTATCATTCA
Statistics
Matches: 172, Mismatches: 34, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
38 3 0.02
39 22 0.13
40 146 0.85
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
Found at i:76104973 original size:80 final size:80
Alignment explanation
Indices: 76104839--76105085 Score: 356
Period size: 80 Copynumber: 3.1 Consensus size: 80
76104829 TCTTCGGAAT
* ** *
76104839 TTAG-CCGGATATAACCACAAGCAC-AATTGCCTTC-GGTCTTAACCCGGATTTGGTAACTTGCA
1 TTAGCCCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGGATTTGGTAACTTGCA
76104901 CAAATGCCTTCGGGTC
65 CAAATGCCTTCGGGTC
*
76104917 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATTTGGTAACTTGAAC
1 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATTTGGTAACTTGCAC
76104982 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
* ** * * *
76104997 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCAT
1 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATTTGGTAACTTGCAC
*
76105062 AAATGCCTTCGGGAC
66 AAATGCCTTCGGGTC
76105077 TTAGCCCGG
1 TTAGCCCGG
76105086 GTATCATTCA
Statistics
Matches: 153, Mismatches: 13, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
78 4 0.03
79 24 0.16
80 125 0.82
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (80 bp):
TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATTTGGTAACTTGCAC
AAATGCCTTCGGGTC
Found at i:76105041 original size:120 final size:119
Alignment explanation
Indices: 76104861--76105085 Score: 317
Period size: 120 Copynumber: 1.9 Consensus size: 119
76104851 AACCACAAGC
* * *** *
76104861 ACAATTGCCTTCGGTCTTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGCCCGG
1 ACAAATGCCTTCGGTCTTAACCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGG
* * *
76104926 ATATAA-CAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATTTGGTAACTTGA
66 ATATAATC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATTTGGTAACTTGA
* *
76104980 ACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCG
1 ACAAATGCCTTC-GGTCTTAACCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCG
*
76105045 GATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGG
65 GATATAATCACTAGCACAAATGCCTTCGGGACTTAGCCCGG
76105086 GTATCATTCA
Statistics
Matches: 92, Mismatches: 12, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
119 11 0.12
120 80 0.87
121 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (119 bp):
ACAAATGCCTTCGGTCTTAACCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGG
ATATAATCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATTTGGTAACTTGA
Found at i:76112999 original size:27 final size:28
Alignment explanation
Indices: 76112969--76113038 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
76112959 ATAGTGAATC
*
76112969 CGCACACTTAGTGCTATAAAATC-AGCT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
76112996 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATAAAATCAAACT
76113024 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
76113039 GTACAATTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 21 0.57
28 16 0.43
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:76113110 original size:42 final size:42
Alignment explanation
Indices: 76113046--76113152 Score: 196
Period size: 42 Copynumber: 2.5 Consensus size: 42
76113036 GCTGTACAAT
* *
76113046 TTTAAACCCGCACACGTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
76113088 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
76113130 TTTATACCCGCACACTTAGTGCC
1 TTTATACCCGCACACTTAGTGCC
76113153 GAGACCAACA
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 63 1.00
ACGTcount: A:0.22, C:0.34, G:0.15, T:0.29
Consensus pattern (42 bp):
TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
Found at i:76114423 original size:21 final size:21
Alignment explanation
Indices: 76114356--76114423 Score: 50
Period size: 21 Copynumber: 3.1 Consensus size: 21
76114346 GTTTCCTTGC
76114356 CCATAATTTTGTCATGGCCGG
1 CCATAATTTTGTCATGGCCGG
* * **
76114377 CCACTATCGTTATTGT--TTGCTTG
1 CCA-TA--ATT-TTGTCATGGCCGG
76114400 CCATAATTTTGTCATGGCCGG
1 CCATAATTTTGTCATGGCCGG
76114421 CCA
1 CCA
76114424 CTATCCTTGT
Statistics
Matches: 33, Mismatches: 8, Indels: 12
0.62 0.15 0.23
Matches are distributed among these distances:
19 4 0.12
20 2 0.06
21 10 0.30
22 4 0.12
23 7 0.21
24 2 0.06
25 4 0.12
ACGTcount: A:0.18, C:0.25, G:0.21, T:0.37
Consensus pattern (21 bp):
CCATAATTTTGTCATGGCCGG
Found at i:76119210 original size:44 final size:44
Alignment explanation
Indices: 76119108--76119268 Score: 184
Period size: 46 Copynumber: 3.6 Consensus size: 44
76119098 GTCGATGCCG
* * *
76119108 TGTCCCAGACAGGTCTTACACT-GACACATGTAACCGT-GCTGACGCA
1 TGTCCCAGACATGTCTTACACTAG-CACATCT---CGTAGCCGACGCA
76119154 TGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCCGACGCA
1 TGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCCGACGCA
* * *
76119198 TGTCCCAGACATGTCTGACACTGGCTATCATCTCG-AGGCCGATGCA
1 TGTCCCAGACATGTCTTACACTAGC-A-CATCTCGTA-GCCGACGCA
76119244 TGTCCCAGACATGTCTTACACTAGC
1 TGTCCCAGACATGTCTTACACTAGC
76119269 CCTCGTCTCA
Statistics
Matches: 102, Mismatches: 8, Indels: 10
0.85 0.07 0.08
Matches are distributed among these distances:
43 3 0.03
44 31 0.30
45 2 0.02
46 65 0.64
47 1 0.01
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.24
Consensus pattern (44 bp):
TGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCCGACGCA
Found at i:76119285 original size:46 final size:43
Alignment explanation
Indices: 76119151--76119313 Score: 166
Period size: 46 Copynumber: 3.6 Consensus size: 43
76119141 CCGTGCTGAC
*
76119151 GCATGTCCCAGACATGTCTTACACTAGCACATCTCGT-AGCCGAC
1 GCATGTCCCAGACATGTCTTACACTAGC-CATCTC-TCAGCCGAT
* * *
76119195 GCATGTCCCAGACATGTCTGACACTGGCTATCATCTCGAGGCCGAT
1 GCATGTCCCAGACATGTCTTACACTAGCCATC-TCTC-A-GCCGAT
*
76119241 GCATGTCCCAGACATGTCTTACACTAGCCCTCGTCTCAATGCCGAT
1 GCATGTCCCAGACATGTCTTACACTAGCCATC-TCTC-A-GCCGAT
* *
76119287 GCCATGTCTCATACATGGTCTTACACT
1 G-CATGTCCCAGACAT-GTCTTACACT
76119314 GGCACACAAA
Statistics
Matches: 100, Mismatches: 13, Indels: 8
0.83 0.11 0.07
Matches are distributed among these distances:
43 4 0.04
44 28 0.28
45 1 0.01
46 45 0.45
47 12 0.12
48 10 0.10
ACGTcount: A:0.23, C:0.33, G:0.19, T:0.26
Consensus pattern (43 bp):
GCATGTCCCAGACATGTCTTACACTAGCCATCTCTCAGCCGAT
Found at i:76121827 original size:46 final size:46
Alignment explanation
Indices: 76121760--76121934 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
76121750 TGTAACCCGC
* *
76121760 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCACAT
76121806 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCACAT
* * * *
76121856 -C-TCA-CGAACTCGGACTC-ACTCAACGAGTTCGGACATTCCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTT-CACAT
76121899 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
76121935 ATGCTCAACC
Statistics
Matches: 110, Mismatches: 8, Indels: 21
0.79 0.06 0.15
Matches are distributed among these distances:
41 2 0.02
43 5 0.05
44 1 0.01
45 2 0.02
46 62 0.56
47 27 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCACAT
Done.