Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 242 of 318
Found at i:76121900 original size:93 final size:93
Alignment explanation
Indices: 76121768--76121938 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
76121758 GCCCATAAGT
* * *
76121768 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
76121833 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
76121861 GAACTCGGACTC-ACTCAACGAGTTCGGACATTCCACATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATT-CACATCCATAAGTGAACTCGGACTCAACTCA
76121925 ACGAGTTCGGATGC
65 ACGAGTTCGGATGC
76121939 TCAACCATTC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 17 0.23
93 56 0.77
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:76124852 original size:16 final size:16
Alignment explanation
Indices: 76124831--76124883 Score: 54
Period size: 16 Copynumber: 3.4 Consensus size: 16
76124821 TTGGACTAAA
76124831 TTGAATGAAAATATGT
1 TTGAATGAAAATATGT
* *** *
76124847 TTGAATTAGTTTA-AT
1 TTGAATGAAAATATGT
76124862 TTGAATGAAAATATGT
1 TTGAATGAAAATATGT
76124878 TTGAAT
1 TTGAAT
76124884 TAGTTTAATT
Statistics
Matches: 26, Mismatches: 10, Indels: 2
0.68 0.26 0.05
Matches are distributed among these distances:
15 10 0.38
16 16 0.62
ACGTcount: A:0.40, C:0.00, G:0.17, T:0.43
Consensus pattern (16 bp):
TTGAATGAAAATATGT
Found at i:76124866 original size:15 final size:15
Alignment explanation
Indices: 76124846--76124898 Score: 52
Period size: 15 Copynumber: 3.5 Consensus size: 15
76124836 TGAAAATATG
76124846 TTTGAATTAGTTTAA
1 TTTGAATTAGTTTAA
* *** *
76124861 TTTGAATGAAAATATG
1 TTTGAATTAGTTTA-A
76124877 TTTGAATTAGTTTAA
1 TTTGAATTAGTTTAA
76124892 TTTGAAT
1 TTTGAAT
76124899 ATGCTTAGAT
Statistics
Matches: 27, Mismatches: 10, Indels: 2
0.69 0.26 0.05
Matches are distributed among these distances:
15 17 0.63
16 10 0.37
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.49
Consensus pattern (15 bp):
TTTGAATTAGTTTAA
Found at i:76124866 original size:31 final size:31
Alignment explanation
Indices: 76124831--76124898 Score: 136
Period size: 31 Copynumber: 2.2 Consensus size: 31
76124821 TTGGACTAAA
76124831 TTGAATGAAAATATGTTTGAATTAGTTTAAT
1 TTGAATGAAAATATGTTTGAATTAGTTTAAT
76124862 TTGAATGAAAATATGTTTGAATTAGTTTAAT
1 TTGAATGAAAATATGTTTGAATTAGTTTAAT
76124893 TTGAAT
1 TTGAAT
76124899 ATGCTTAGAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.38, C:0.00, G:0.16, T:0.46
Consensus pattern (31 bp):
TTGAATGAAAATATGTTTGAATTAGTTTAAT
Found at i:76127876 original size:18 final size:18
Alignment explanation
Indices: 76127853--76127887 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
76127843 TTCTCGGGTG
76127853 GTAGTCGATTATCAACTT
1 GTAGTCGATTATCAACTT
**
76127871 GTAGTCTTTTATCAACT
1 GTAGTCGATTATCAACT
76127888 CCAACCATCT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.26, C:0.17, G:0.14, T:0.43
Consensus pattern (18 bp):
GTAGTCGATTATCAACTT
Found at i:76132676 original size:47 final size:48
Alignment explanation
Indices: 76132602--76132730 Score: 120
Period size: 49 Copynumber: 2.7 Consensus size: 48
76132592 GGGATAAGAT
* * *
76132602 GCCGATGCTATGT-CCTGACATGGTCTTACACT-AGCTAGC-ATATCAAA
1 GCCGATGCCATGTCCCAGACA-GCTCTTACACTGA-CTAGCAATATCAAA
* ** * *
76132649 GTCGATGCCATGTCCCAGACAGCTCTTACACTGACTTTCATATATCGAG
1 GCCGATGCCATGTCCCAGACAGCTCTTACACTGACTAGCA-ATATCAAA
* *
76132698 GCCGATGCCGTGTCCCAGACAGGTCTTACACTG
1 GCCGATGCCATGTCCCAGACAGCTCTTACACTG
76132731 GCTCTCATCT
Statistics
Matches: 67, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
47 24 0.36
48 7 0.10
49 36 0.54
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACAGCTCTTACACTGACTAGCAATATCAAA
Found at i:76132712 original size:49 final size:49
Alignment explanation
Indices: 76132651--76132781 Score: 174
Period size: 49 Copynumber: 2.7 Consensus size: 49
76132641 ATATCAAAGT
* *
76132651 CGATGCCATGTCCCAGACAGCTCTTACACTGACTTTCATATATCGAG-GC
1 CGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCG-GTGC
* * * *
76132700 CGATGCCGTGTCCCAGACAGGTCTTACACTGGCTCTCATCTATCGGTGT
1 CGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGGTGC
* *
76132749 CGATGCCATGTCCCAAATAGGTCTTACACTGAC
1 CGATGCCATGTCCCAGACAGGTCTTACACTGAC
76132782 ACACAACAAG
Statistics
Matches: 71, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
48 1 0.01
49 70 0.99
ACGTcount: A:0.22, C:0.31, G:0.21, T:0.27
Consensus pattern (49 bp):
CGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGGTGC
Found at i:76132817 original size:44 final size:44
Alignment explanation
Indices: 76132753--76132866 Score: 183
Period size: 44 Copynumber: 2.6 Consensus size: 44
76132743 CGGTGTCGAT
* *
76132753 GCCATGTCCCAAATAGGTCTTACACTGACACACAACAAGCTAAC
1 GCCATGTCCCAAACATGTCTTACACTGACACACAACAAGCTAAC
* *
76132797 GCCATGTCCCAAACATGTCTTACACTGATACACAACAAGCTGAC
1 GCCATGTCCCAAACATGTCTTACACTGACACACAACAAGCTAAC
*
76132841 GCCATGTCCCAGACATGTCTTACACT
1 GCCATGTCCCAAACATGTCTTACACT
76132867 AGCTTGTATA
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 65 1.00
ACGTcount: A:0.32, C:0.32, G:0.14, T:0.21
Consensus pattern (44 bp):
GCCATGTCCCAAACATGTCTTACACTGACACACAACAAGCTAAC
Found at i:76132954 original size:46 final size:46
Alignment explanation
Indices: 76132843--76133051 Score: 196
Period size: 46 Copynumber: 4.5 Consensus size: 46
76132833 AAGCTGACGC
* * *
76132843 CATGTCCCAGACATGTCTTACACTAGCT-T-GTATATCTTGAGGCTGATG
1 CATGTCCCAAACATGTCTTACACTAGCTCTCGTATA----GAAGCCGATG
* * *
76132891 CATGTCCCAGACATGTCTTTCACTAGCTCTCGTCTCA-AAGCCGATG
1 CATGTCCCAAACATGTCTTACACTAGCTCTCGTAT-AGAAGCCGATG
* *
76132937 CATGTCCCAAACATGTCTTACACTAG-T-TGGTATATGAGGCCGATG
1 CATGTCCCAAACATGTCTTACACTAGCTCTCGTATA-GAAGCCGATG
* ** *
76132982 CATGTCCCAAACATGTCTTACACTAGCTCTCATA-ATGTGGCTGATG
1 CATGTCCCAAACATGTCTTACACTAGCTCTCGTATA-GAAGCCGATG
*
76133028 CATGTCCCAGACATGTCTTACACT
1 CATGTCCCAAACATGTCTTACACT
76133052 GGCACACGTA
Statistics
Matches: 140, Mismatches: 14, Indels: 16
0.82 0.08 0.09
Matches are distributed among these distances:
43 1 0.01
44 4 0.03
45 35 0.25
46 65 0.46
47 3 0.02
48 27 0.19
49 1 0.01
50 3 0.02
51 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (46 bp):
CATGTCCCAAACATGTCTTACACTAGCTCTCGTATAGAAGCCGATG
Found at i:76133028 original size:91 final size:92
Alignment explanation
Indices: 76132799--76133051 Score: 277
Period size: 91 Copynumber: 2.8 Consensus size: 92
76132789 AAGCTAACGC
* * * *
76132799 CATGTCCCAAACATGTCTTACACT-GATACACA-A-C-AAGCTGACGCCATGTCCCAGACATGTC
1 CATGTCCCAAACATGTCTTACACTAGCT-CTCATATCAAAGCCGATG-CATGTCCCAGACATGTC
*
76132860 TTACACTAGCTTGTATATCTTGAGGCTGATG
64 TTACACTAGCTTGTATA--TTGAGGCCGATG
* * * * *
76132891 CATGTCCCAGACATGTCTTTCACTAGCTCTCGTCTCAAAGCCGATGCATGTCCCAAACATGTCTT
1 CATGTCCCAAACATGTCTTACACTAGCTCTCATATCAAAGCCGATGCATGTCCCAGACATGTCTT
76132956 ACACTAG-TTGGTATA-TGAGGCCGATG
66 ACACTAGCTT-GTATATTGAGGCCGATG
*** *
76132982 CATGTCCCAAACATGTCTTACACTAGCTCTCATAAT-GTGGCTGATGCATGTCCCAGACATGTCT
1 CATGTCCCAAACATGTCTTACACTAGCTCTCAT-ATCAAAGCCGATGCATGTCCCAGACATGTCT
76133046 TACACT
65 TACACT
76133052 GGCACACGTA
Statistics
Matches: 136, Mismatches: 19, Indels: 13
0.81 0.11 0.08
Matches are distributed among these distances:
91 69 0.51
92 25 0.18
93 4 0.03
94 31 0.23
95 7 0.05
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (92 bp):
CATGTCCCAAACATGTCTTACACTAGCTCTCATATCAAAGCCGATGCATGTCCCAGACATGTCTT
ACACTAGCTTGTATATTGAGGCCGATG
Found at i:76135482 original size:44 final size:42
Alignment explanation
Indices: 76135428--76135529 Score: 143
Period size: 44 Copynumber: 2.4 Consensus size: 42
76135418 TTTCGGTATG
*
76135428 TGATTTCGTGTAAGACCACGTCTGGGACATTAGCATCA-ATT
1 TGATTTCGTGTAAGACCACGTCTGGGACATCAGCATCATATT
* *
76135469 TGAGATTTGCGTGTAAGACCATGTCTGGGACATCGGCATCATATT
1 T--GATTT-CGTGTAAGACCACGTCTGGGACATCAGCATCATATT
76135514 TGATTTCGTGTAAGAC
1 TGATTTCGTGTAAGAC
76135530 TCTGTGTAGG
Statistics
Matches: 54, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
41 1 0.02
42 10 0.19
43 10 0.19
44 29 0.54
45 4 0.07
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (42 bp):
TGATTTCGTGTAAGACCACGTCTGGGACATCAGCATCATATT
Found at i:76135557 original size:43 final size:42
Alignment explanation
Indices: 76135428--76135574 Score: 147
Period size: 43 Copynumber: 3.4 Consensus size: 42
76135418 TTTCGGTATG
* * **
76135428 TGATTTCGTGTAAGACCACGTCTGGGACATTAGCATCA-ATT
1 TGATTTCGTGTAAGACCATGTCTAGGACATCGGCATCATATT
*
76135469 TGAGATTTGCGTGTAAGACCATGTCTGGGACATCGGCATCATATT
1 T--GATTT-CGTGTAAGACCATGTCTAGGACATCGGCATCATATT
*
76135514 TGATTTCGTGTAAGACTC-TGTGTAGGACAGT-GGCATCGATATT
1 TGATTTCGTGTAAGAC-CATGTCTAGGACA-TCGGCATC-ATATT
* *
76135557 TGATTACATGTAAGACCA
1 TGATTTCGTGTAAGACCA
76135575 AGTCAGGGAC
Statistics
Matches: 91, Mismatches: 7, Indels: 14
0.81 0.06 0.12
Matches are distributed among these distances:
41 1 0.01
42 26 0.29
43 31 0.34
44 29 0.32
45 4 0.04
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32
Consensus pattern (42 bp):
TGATTTCGTGTAAGACCATGTCTAGGACATCGGCATCATATT
Found at i:76135591 original size:43 final size:42
Alignment explanation
Indices: 76135436--76135592 Score: 106
Period size: 43 Copynumber: 3.7 Consensus size: 42
76135426 TGTGATTTCG
* * * * * *
76135436 TGTAAGACCACGTCTGGGACATTAGCATCA-ATTTGAGATTTGCG
1 TGTAAGACCATGTCAGGGACGTTGGCATCATATTT--GA-TTACA
* * * * *
76135480 TGTAAGACCATGTCTGGGACATCGGCATCATATTTGATTTCG
1 TGTAAGACCATGTCAGGGACGTTGGCATCATATTTGATTACA
*
76135522 TGTAAGACTC-TGTGTA-GGACAG-TGGCATCGATATTTGATTACA
1 TGTAAGAC-CATGT-CAGGGAC-GTTGGCATC-ATATTTGATTACA
*
76135565 TGTAAGACCAAGTCAGGGACGTTGGCAT
1 TGTAAGACCATGTCAGGGACGTTGGCAT
76135593 TGTACGAGCT
Statistics
Matches: 93, Mismatches: 12, Indels: 17
0.76 0.10 0.14
Matches are distributed among these distances:
42 28 0.30
43 34 0.37
44 27 0.29
45 4 0.04
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (42 bp):
TGTAAGACCATGTCAGGGACGTTGGCATCATATTTGATTACA
Found at i:76142196 original size:29 final size:29
Alignment explanation
Indices: 76142164--76142236 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
76142154 CTTCGAGCTC
*
76142164 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
76142193 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
76142222 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
76142237 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:76150245 original size:29 final size:29
Alignment explanation
Indices: 76150213--76150285 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
76150203 CTTCGAGCTC
*
76150213 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
76150242 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
76150271 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
76150286 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:76154433 original size:42 final size:42
Alignment explanation
Indices: 76154307--76154467 Score: 166
Period size: 43 Copynumber: 3.8 Consensus size: 42
76154297 TAGAATTCCG
*
76154307 GTATGTGATTTCGTGTAAGACCATGTCTGGGAC-GTTGGCATC
1 GTATTTGATTTCGTGTAAGACCATGTCTGGGACAG-TGGCATC
76154349 G-ATTTGAGATTTACGTGTAAGACCATGTCTGGGACA-TCGGCATC
1 GTATTT--GATTT-CGTGTAAGACCATGTCTGGGACAGT-GGCATC
* * * *
76154393 GTATTTGATTTCGTATAAGACCCTGTCCGAGACAGTGGCATC
1 GTATTTGATTTCGTGTAAGACCATGTCTGGGACAGTGGCATC
* * * *
76154435 GATATTTAATTACATGTAAGACCATGTTTGGGA
1 G-TATTTGATTTCGTGTAAGACCATGTCTGGGA
76154468 TGTTGGCATT
Statistics
Matches: 98, Mismatches: 13, Indels: 15
0.78 0.10 0.12
Matches are distributed among these distances:
41 3 0.03
42 27 0.28
43 35 0.36
44 29 0.30
45 4 0.04
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (42 bp):
GTATTTGATTTCGTGTAAGACCATGTCTGGGACAGTGGCATC
Found at i:76154475 original size:43 final size:43
Alignment explanation
Indices: 76154318--76154476 Score: 162
Period size: 44 Copynumber: 3.7 Consensus size: 43
76154308 TATGTGATTT
*
76154318 CGTGTAAGACCATGTCTGGGACGTTGGCATCGAT-TTGAGATTTA
1 CGTGTAAGACCATGTCTGGGACGTTGGCATCGATATTTA-A-TTA
* * * *
76154362 CGTGTAAGACCATGTCTGGGACATCGGCATCG-TATTTGATTT
1 CGTGTAAGACCATGTCTGGGACGTTGGCATCGATATTTAATTA
* * * *
76154404 CGTATAAGACCCTGTCCGAGACAG-TGGCATCGATATTTAATTA
1 CGTGTAAGACCATGTCTGGGAC-GTTGGCATCGATATTTAATTA
* * *
76154447 CATGTAAGACCATGTTTGGGATGTTGGCAT
1 CGTGTAAGACCATGTCTGGGACGTTGGCAT
76154477 TGTACGAGCT
Statistics
Matches: 91, Mismatches: 20, Indels: 9
0.76 0.17 0.08
Matches are distributed among these distances:
42 28 0.31
43 31 0.34
44 32 0.35
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (43 bp):
CGTGTAAGACCATGTCTGGGACGTTGGCATCGATATTTAATTA
Found at i:76155957 original size:42 final size:42
Alignment explanation
Indices: 76155902--76155984 Score: 103
Period size: 42 Copynumber: 2.0 Consensus size: 42
76155892 CATGAAATAT
* * **
76155902 CATATCGACGCCATGTCCTTGACATGGTCTTATACAAAATCA
1 CATACCGACGCCATATCCCAGACATGGTCTTATACAAAATCA
* * *
76155944 CATACCGATGCCATATCCCAGATATGGTCTTATACAGAATC
1 CATACCGACGCCATATCCCAGACATGGTCTTATACAAAATC
76155985 TCAGTAGCCG
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.28
Consensus pattern (42 bp):
CATACCGACGCCATATCCCAGACATGGTCTTATACAAAATCA
Found at i:76161360 original size:20 final size:20
Alignment explanation
Indices: 76161335--76161387 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
76161325 TACGGGATTA
**
76161335 CACTTTGGTGCCTCTGTTTG
1 CACTTTGGTGCCTCTAATTG
*
76161355 CACTTTGATGCCTCTAATTG
1 CACTTTGGTGCCTCTAATTG
76161375 CACATTT-GTGCCT
1 CAC-TTTGGTGCCT
76161388 TCGTCTGCAC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
20 25 0.89
21 3 0.11
ACGTcount: A:0.13, C:0.26, G:0.19, T:0.42
Consensus pattern (20 bp):
CACTTTGGTGCCTCTAATTG
Found at i:76166301 original size:40 final size:39
Alignment explanation
Indices: 76166257--76166438 Score: 238
Period size: 39 Copynumber: 4.6 Consensus size: 39
76166247 GTTCAAAACA
* * ** * *
76166257 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* * *
76166297 CCTTCGGGACTTAACCCGGATATCACAACTTGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
76166337 CCTTCGGGCTTAGCCCGGGTATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
*
76166376 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
76166415 CCTTCGGGCTTAGCCCGGATATCA
1 CCTTCGGGCTTAGCCCGGATATCA
76166439 CTCGAACATT
Statistics
Matches: 127, Mismatches: 15, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 88 0.69
40 39 0.31
ACGTcount: A:0.22, C:0.31, G:0.23, T:0.24
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:76166371 original size:39 final size:39
Alignment explanation
Indices: 76166287--76166438 Score: 241
Period size: 39 Copynumber: 3.9 Consensus size: 39
76166277 TATGGTAACC
* * * *
76166287 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCATAGCT
* *
76166327 TGCACAATTGCCTTCGGGCTTAGCCCGGGTATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
76166366 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
76166405 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
76166439 CTCGAACATT
Statistics
Matches: 104, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 88 0.85
40 16 0.15
ACGTcount: A:0.22, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
Found at i:76169272 original size:15 final size:15
Alignment explanation
Indices: 76169252--76169283 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
76169242 AACTTGGTGT
76169252 AACATGAGTATAGGA
1 AACATGAGTATAGGA
76169267 AACATGAGTATAGGA
1 AACATGAGTATAGGA
76169282 AA
1 AA
76169284 TAAACACATG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.50, C:0.06, G:0.25, T:0.19
Consensus pattern (15 bp):
AACATGAGTATAGGA
Found at i:76169376 original size:13 final size:13
Alignment explanation
Indices: 76169358--76169382 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
76169348 AAGTTGATGT
76169358 TATAATGTGTATC
1 TATAATGTGTATC
76169371 TATAATGTGTAT
1 TATAATGTGTAT
76169383 AAGTATGGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.16, T:0.48
Consensus pattern (13 bp):
TATAATGTGTATC
Found at i:76169939 original size:13 final size:13
Alignment explanation
Indices: 76169918--76169946 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
76169908 AAATGGTAAG
76169918 ATGAAATGCTTAT
1 ATGAAATGCTTAT
76169931 ATGAAATGCTTAT
1 ATGAAATGCTTAT
76169944 ATG
1 ATG
76169947 GATACATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.38, C:0.07, G:0.17, T:0.38
Consensus pattern (13 bp):
ATGAAATGCTTAT
Found at i:76173588 original size:25 final size:25
Alignment explanation
Indices: 76173559--76173608 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
76173549 ATTCAATATT
76173559 TATATTTGTTTAAATAATTGTTTAA
1 TATATTTGTTTAAATAATTGTTTAA
76173584 TATATTTGTTTAAATAATTGTTTAA
1 TATATTTGTTTAAATAATTGTTTAA
76173609 CTCACACTGC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.36, C:0.00, G:0.08, T:0.56
Consensus pattern (25 bp):
TATATTTGTTTAAATAATTGTTTAA
Found at i:76173594 original size:13 final size:12
Alignment explanation
Indices: 76173564--76173608 Score: 72
Period size: 12 Copynumber: 3.7 Consensus size: 12
76173554 ATATTTATAT
76173564 TTGTTTAAATAA
1 TTGTTTAAATAA
*
76173576 TTGTTTAATATAT
1 TTGTTTAA-ATAA
76173589 TTGTTTAAATAA
1 TTGTTTAAATAA
76173601 TTGTTTAA
1 TTGTTTAA
76173609 CTCACACTGC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
12 19 0.63
13 11 0.37
ACGTcount: A:0.36, C:0.00, G:0.09, T:0.56
Consensus pattern (12 bp):
TTGTTTAAATAA
Found at i:76175538 original size:44 final size:44
Alignment explanation
Indices: 76175478--76175566 Score: 160
Period size: 44 Copynumber: 2.0 Consensus size: 44
76175468 AGCTGGAAAT
* *
76175478 AAAATTTATTTTAATATTATTGCATGGTCTGCATTATGATAGGA
1 AAAATTTATATTAATATTATTGCATGGTCTACATTATGATAGGA
76175522 AAAATTTATATTAATATTATTGCATGGTCTACATTATGATAGGA
1 AAAATTTATATTAATATTATTGCATGGTCTACATTATGATAGGA
76175566 A
1 A
76175567 TGTCATATGA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.37, C:0.07, G:0.15, T:0.42
Consensus pattern (44 bp):
AAAATTTATATTAATATTATTGCATGGTCTACATTATGATAGGA
Found at i:76180116 original size:43 final size:42
Alignment explanation
Indices: 76179967--76180137 Score: 168
Period size: 43 Copynumber: 4.0 Consensus size: 42
76179957 TTATCATACA
* *
76179967 ATGCCAACGTCCCAGATGTGGTCTTACATGCAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACG-AATCACATATCG
* *
76180010 ATGCC-ACTGTCCCAGATAG-GGTCTTACACGAATCAAATA-CG
1 ATGCCAAC-GTCCCAGA-CGTGGTCTTACACGAATCACATATCG
* * * *
76180051 ATGCCAATGTCCCATACATGGTCTTACACGTAATCACATATTG
1 ATGCCAACGTCCCAGACGTGGTCTTACACG-AATCACATATCG
* ** *
76180094 ATGCCAACGTCCTAGACGTGGTCTTATTCGAGAACACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGA-ATCACATATCG
76180137 A
1 A
76180138 AAATCCTATG
Statistics
Matches: 104, Mismatches: 17, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
41 25 0.24
42 20 0.19
43 58 0.56
44 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGAATCACATATCG
Found at i:76181475 original size:21 final size:20
Alignment explanation
Indices: 76181449--76181487 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
76181439 AATGTTCTTT
76181449 CATTGCATCTTCTAGCTCCCA
1 CATTGCATCTTCTA-CTCCCA
*
76181470 CATTGCCTCTTCTACTCC
1 CATTGCATCTTCTACTCC
76181488 ATGTTTATGC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.15, C:0.41, G:0.08, T:0.36
Consensus pattern (20 bp):
CATTGCATCTTCTACTCCCA
Found at i:76184610 original size:50 final size:50
Alignment explanation
Indices: 76184482--76184612 Score: 167
Period size: 50 Copynumber: 2.6 Consensus size: 50
76184472 TTGGTATGCA
* * *
76184482 TAGTAGCCTACACTTAGTACTACACATGCGACCTAACAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGGTACACG
* *
76184532 TAGTAGCCTGCACTTAGTA-TAACACACGTGACTTAACCATC-GGATACACG
1 TAGTAGCCTGCACTTAGTACT-ACACACGTGACCTAACAATCTGG-TACACG
* *
76184582 TAGTAGCTTGCACTTGGTACTACACACGTGA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA
76184613 TCGAAGTTGT
Statistics
Matches: 71, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
49 3 0.04
50 67 0.94
51 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGGTACACG
Found at i:76186928 original size:41 final size:40
Alignment explanation
Indices: 76186761--76186941 Score: 263
Period size: 40 Copynumber: 4.5 Consensus size: 40
76186751 GCTCGATTAT
* *
76186761 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGC
*
76186801 CTTCGGGAATTAACCCGGATTTAGTAACTCGCACAAATGC
1 CTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGC
* * *
76186841 CTTCGGGAATTAACTCGGATTTAGTAACTCGCACAAAGGC
1 CTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGC
* * *
76186881 CTTCGGGACTTAACCCGGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACTTAACCCGGATTTAGTAAC-TCGCACAAATGC
*
76186922 CTTCGGGACTTAGCCCGGAT
1 CTTCGGGACTTAACCCGGAT
76186942 ACCATTCAAA
Statistics
Matches: 129, Mismatches: 11, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
40 100 0.78
41 29 0.22
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGC
Found at i:76191114 original size:22 final size:23
Alignment explanation
Indices: 76191071--76191119 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 23
76191061 TAATGACATT
* * **
76191071 TTATTTAATTACTTATTTAACC-
1 TTATTTAATAAATTATAAAACCA
76191093 TTATTTAATAAATTATAAAACCA
1 TTATTTAATAAATTATAAAACCA
76191116 TTAT
1 TTAT
76191120 ACTATGGTCA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
22 18 0.82
23 4 0.18
ACGTcount: A:0.41, C:0.10, G:0.00, T:0.49
Consensus pattern (23 bp):
TTATTTAATAAATTATAAAACCA
Found at i:76195499 original size:29 final size:29
Alignment explanation
Indices: 76195466--76195626 Score: 198
Period size: 29 Copynumber: 5.6 Consensus size: 29
76195456 GTGACGAGAT
76195466 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
76195495 CGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
76195524 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * ***
76195553 TGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * **
76195582 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
76195611 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
76195627 AAATCGAGTA
Statistics
Matches: 115, Mismatches: 16, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
28 2 0.02
29 113 0.98
ACGTcount: A:0.25, C:0.17, G:0.32, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:76203006 original size:29 final size:29
Alignment explanation
Indices: 76202973--76203133 Score: 207
Period size: 29 Copynumber: 5.6 Consensus size: 29
76202963 GTGACGAGAT
76202973 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
76203002 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
76203031 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * ***
76203060 TGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * **
76203089 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
76203118 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
76203134 AAATCGAGTA
Statistics
Matches: 117, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
28 2 0.02
29 115 0.98
ACGTcount: A:0.25, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:76209519 original size:43 final size:43
Alignment explanation
Indices: 76209380--76209519 Score: 162
Period size: 41 Copynumber: 3.3 Consensus size: 43
76209370 ATATCGTACA
* * * *
76209380 ATGCCAACGTCCCAGA-GTGGTCTTACATGCAATAACATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAATCACATATCG
* * *
76209422 ATGCC-ACTGTCCCAAACAGGGTCTTACACGT-ATCAAATA-CG
1 ATGCCAAC-GTCCCAGACATGGTCTTACACGTAATCACATATCG
*
76209463 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAATCACATATCG
*
76209506 ATGCCAACATCCCA
1 ATGCCAACGTCCCA
76209520 AATGTGGTCT
Statistics
Matches: 80, Mismatches: 13, Indels: 9
0.78 0.13 0.09
Matches are distributed among these distances:
41 30 0.38
42 26 0.32
43 24 0.30
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.23
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGTAATCACATATCG
Found at i:76209528 original size:43 final size:42
Alignment explanation
Indices: 76209380--76209532 Score: 154
Period size: 43 Copynumber: 3.6 Consensus size: 42
76209370 ATATCGTACA
* * * *
76209380 ATGCCAACGTCCCAGAGTGGTCTTACATGCAATAACATATCG
1 ATGCCAACGTCCCAAAGTGGTCTTACACGTAATCACATATCG
*
76209422 ATGCC-ACTGTCCCAAACAG-GGTCTTACACGT-ATCAAATA-CG
1 ATGCCAAC-GTCCC-AA-AGTGGTCTTACACGTAATCACATATCG
*
76209463 ATGCCAATGTCCCAGACA-TGGTCTTACACGTAATCACATATCG
1 ATGCCAACGTCCCA-A-AGTGGTCTTACACGTAATCACATATCG
*
76209506 ATGCCAACATCCCAAATGTGGTCTTAC
1 ATGCCAACGTCCCAAA-GTGGTCTTAC
76209533 TCAAGAACAC
Statistics
Matches: 92, Mismatches: 9, Indels: 19
0.77 0.08 0.16
Matches are distributed among these distances:
40 1 0.01
41 30 0.33
42 25 0.27
43 34 0.37
44 2 0.02
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (42 bp):
ATGCCAACGTCCCAAAGTGGTCTTACACGTAATCACATATCG
Found at i:76221833 original size:21 final size:22
Alignment explanation
Indices: 76221809--76221849 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
76221799 AATTCTAAGA
*
76221809 AATAAAAT-TTTGAAAATTTAC
1 AATAAAATCTTAGAAAATTTAC
*
76221830 AATAAACTCTTAGAAAATTT
1 AATAAAATCTTAGAAAATTT
76221850 TGAAACAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 7 0.41
22 10 0.59
ACGTcount: A:0.51, C:0.07, G:0.05, T:0.37
Consensus pattern (22 bp):
AATAAAATCTTAGAAAATTTAC
Found at i:76225340 original size:40 final size:40
Alignment explanation
Indices: 76225281--76225488 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 40
76225271 CAATTGAATG
* * * *
76225281 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
76225321 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
76225361 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
76225401 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
76225441 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
76225481 ATATCCGG
1 ATATCCGG
76225489 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
39 2 0.01
40 136 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:76225419 original size:80 final size:80
Alignment explanation
Indices: 76225283--76225488 Score: 236
Period size: 80 Copynumber: 2.6 Consensus size: 80
76225273 ATTGAATGAT
* * ** * * *
76225283 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
76225347 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
76225363 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
76225428 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* *
76225443 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
76225489 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
79 2 0.02
80 103 0.96
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:76233375 original size:40 final size:40
Alignment explanation
Indices: 76233316--76233523 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 40
76233306 CAATTGAATG
* * * *
76233316 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
76233356 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
76233396 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
76233436 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
76233476 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
76233516 ATATCCGG
1 ATATCCGG
76233524 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
39 2 0.01
40 136 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:76233454 original size:80 final size:80
Alignment explanation
Indices: 76233318--76233523 Score: 236
Period size: 80 Copynumber: 2.6 Consensus size: 80
76233308 ATTGAATGAT
* * ** * * *
76233318 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
76233382 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
76233398 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
76233463 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* *
76233478 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
76233524 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
79 2 0.02
80 103 0.96
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:76243738 original size:28 final size:28
Alignment explanation
Indices: 76243669--76243769 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
76243659 GACAAGATTG
* * * *
76243669 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
76243699 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
76243727 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
76243756 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
76243770 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:76249805 original size:13 final size:13
Alignment explanation
Indices: 76249787--76249811 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
76249777 GAGTTGGTAT
76249787 TGATATGTGATTC
1 TGATATGTGATTC
76249800 TGATATGTGATT
1 TGATATGTGATT
76249812 ACGTGTAAGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.04, G:0.24, T:0.48
Consensus pattern (13 bp):
TGATATGTGATTC
Found at i:76249947 original size:85 final size:86
Alignment explanation
Indices: 76249801--76250000 Score: 280
Period size: 85 Copynumber: 2.3 Consensus size: 86
76249791 ATGTGATTCT
* * *
76249801 GATATGTGATTACGTGTAAGACCATGTCTGGGATGTTGGCATCAATATGTGATTACGTGTAAGAC
1 GATATGTGATTACGTGTAAGACCACGTCTAGGATGTTGGCATCAATATGTGATTACATGTAAGAC
*
76249866 CAC-GTCTAGGA-TGTTGGCATC
66 C-CTGTCTAGGACAG-TGGCATC
*
76249887 GATATGTGATTACGTGTAAGACCACGTCTAGGA-GTTGGCATCGATATGTGATTACATGTAAGAC
1 GATATGTGATTACGTGTAAGACCACGTCTAGGATGTTGGCATCAATATGTGATTACATGTAAGAC
* * *
76249951 CCTGTTTGGGACAGTGGCATT
66 CCTGTCTAGGACAGTGGCATC
*
76249972 GATATGTGATTACATGTAAGACCACGTCT
1 GATATGTGATTACGTGTAAGACCACGTCT
76250001 GGGACATTGG
Statistics
Matches: 103, Mismatches: 9, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
84 1 0.01
85 70 0.68
86 32 0.31
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (86 bp):
GATATGTGATTACGTGTAAGACCACGTCTAGGATGTTGGCATCAATATGTGATTACATGTAAGAC
CCTGTCTAGGACAGTGGCATC
Found at i:76250015 original size:43 final size:43
Alignment explanation
Indices: 76249801--76250013 Score: 288
Period size: 43 Copynumber: 5.0 Consensus size: 43
76249791 ATGTGATTCT
* *
76249801 GATATGTGATTACGTGTAAGACCATGTCTGGGATGTTGGCATC
1 GATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATC
* * *
76249844 AATATGTGATTACGTGTAAGACCACGTCTAGGATGTTGGCATC
1 GATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATC
*
76249887 GATATGTGATTACGTGTAAGACCACGTCTAGGA-GTTGGCATC
1 GATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATC
* * *
76249929 GATATGTGATTACATGTAAGACC-CTGTTTGGGACAG-TGGCATT
1 GATATGTGATTACGTGTAAGACCAC-GTCTGGGAC-GTTGGCATC
* *
76249972 GATATGTGATTACATGTAAGACCACGTCTGGGACATTGGCAT
1 GATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCAT
76250014 TGTACAATAT
Statistics
Matches: 155, Mismatches: 10, Indels: 10
0.89 0.06 0.06
Matches are distributed among these distances:
41 1 0.01
42 37 0.24
43 115 0.74
44 2 0.01
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (43 bp):
GATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATC
Found at i:76265304 original size:20 final size:20
Alignment explanation
Indices: 76265270--76265307 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
76265260 TCACCATCCC
76265270 ACATTTAAACAATCACATGA
1 ACATTTAAACAATCACATGA
76265290 ACATTATAAAC-ATCACAT
1 ACATT-TAAACAATCACAT
76265308 TTCTTACTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.50, C:0.21, G:0.03, T:0.26
Consensus pattern (20 bp):
ACATTTAAACAATCACATGA
Found at i:76269944 original size:40 final size:40
Alignment explanation
Indices: 76269889--76270186 Score: 440
Period size: 40 Copynumber: 7.5 Consensus size: 40
76269879 CGGATGATAA
* * *
76269889 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
*
76269929 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAC
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
76269969 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
76270009 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
76270049 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
76270089 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
76270129 CTGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
76270169 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
76270187 TACTTGGCTT
Statistics
Matches: 240, Mismatches: 16, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
39 16 0.07
40 224 0.93
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:76278421 original size:40 final size:40
Alignment explanation
Indices: 76278138--76278400 Score: 438
Period size: 40 Copynumber: 6.6 Consensus size: 40
76278128 CGGATGATAA
* * *
76278138 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
76278178 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
76278218 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
76278258 CCGAGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
76278298 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
76278338 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
76278378 CCGGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
76278401 CAAGCGAGTA
Statistics
Matches: 213, Mismatches: 9, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
39 1 0.00
40 212 1.00
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:76281257 original size:42 final size:43
Alignment explanation
Indices: 76281182--76281280 Score: 112
Period size: 42 Copynumber: 2.3 Consensus size: 43
76281172 CGGACGTGGC
* * *
76281182 CTTACATGTAATTCAGTATCGATGCCTCAGTCCCAGATAGGGT
1 CTTACATGTAAATCAGTATCGATGCCTCAGTCCCAAACAGGGT
** *
76281225 CTTACATG-AAATCAG-ATACGATGCCTTTGTCCCAAACATGGT
1 CTTACATGTAAATCAGTAT-CGATGCCTCAGTCCCAAACAGGGT
*
76281267 CTTACACGTAAATC
1 CTTACATGTAAATC
76281281 TCAAATCGAG
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
41 2 0.04
42 32 0.68
43 13 0.28
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.29
Consensus pattern (43 bp):
CTTACATGTAAATCAGTATCGATGCCTCAGTCCCAAACAGGGT
Found at i:76286107 original size:31 final size:31
Alignment explanation
Indices: 76286069--76286131 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
76286059 TCAGATTCTG
76286069 TACATTCTCTTATTCAACAGGTTTAGAACAA
1 TACATTCTCTTATTCAACAGGTTTAGAACAA
76286100 TACATTCTCTTATTCAACAGGTTTAGAACAA
1 TACATTCTCTTATTCAACAGGTTTAGAACAA
76286131 T
1 T
76286132 CTCTTACAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.35, C:0.19, G:0.10, T:0.37
Consensus pattern (31 bp):
TACATTCTCTTATTCAACAGGTTTAGAACAA
Found at i:76288864 original size:42 final size:43
Alignment explanation
Indices: 76288787--76288887 Score: 116
Period size: 42 Copynumber: 2.4 Consensus size: 43
76288777 CTCAGACGTA
* * *
76288787 GTCTTACATGTAATTCAGTATCGATGCCTCAGTCCCAGATAGG
1 GTCTTACATGTAAATCAGTATCGATGCCTCAGTCCCAAACAGG
** *
76288830 GTCTTACATG-AAATCAG-ATACGATGCCTTTGTCCCAAACATG
1 GTCTTACATGTAAATCAGTAT-CGATGCCTCAGTCCCAAACAGG
*
76288872 GTCTTACACGTAAATC
1 GTCTTACATGTAAATC
76288888 TCAAATTGAG
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
41 2 0.04
42 32 0.65
43 15 0.31
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.30
Consensus pattern (43 bp):
GTCTTACATGTAAATCAGTATCGATGCCTCAGTCCCAAACAGG
Found at i:76290917 original size:34 final size:34
Alignment explanation
Indices: 76290870--76290960 Score: 89
Period size: 34 Copynumber: 2.7 Consensus size: 34
76290860 TCTAGGCTTA
*
76290870 AGCCCA-TATCAGTAGCAATATCAATATGGGCCTT
1 AGCCCATTA-CAGTAGCAATATCAATATGGGCCTG
* * * *
76290904 AGCCCATTACAGTAGCAGTAACAGTGTGGGCCTG
1 AGCCCATTACAGTAGCAATATCAATATGGGCCTG
*
76290938 AGCCCAATT-CAATA-CAATATCAA
1 AGCCC-ATTACAGTAGCAATATCAA
76290961 AAATGCATAA
Statistics
Matches: 46, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
33 6 0.13
34 35 0.76
35 5 0.11
ACGTcount: A:0.34, C:0.24, G:0.19, T:0.23
Consensus pattern (34 bp):
AGCCCATTACAGTAGCAATATCAATATGGGCCTG
Found at i:76294339 original size:19 final size:20
Alignment explanation
Indices: 76294295--76294340 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
76294285 AAGATGACAC
*
76294295 CAAATTAACATTTTGTTTTA
1 CAAATTAACATTTTATTTTA
**
76294315 TTAATTAAC-TTTTATTTTA
1 CAAATTAACATTTTATTTTA
76294334 CAAATTA
1 CAAATTA
76294341 CCTTAATAAC
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.37, C:0.09, G:0.02, T:0.52
Consensus pattern (20 bp):
CAAATTAACATTTTATTTTA
Found at i:76296670 original size:31 final size:31
Alignment explanation
Indices: 76296635--76296696 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
76296625 TGAAAAAAAT
76296635 TTAGTCATATTAAAACGTCAATAATTTCCAA
1 TTAGTCATATTAAAACGTCAATAATTTCCAA
76296666 TTAGTCATATTAAAACGTCAATAATTTCCAA
1 TTAGTCATATTAAAACGTCAATAATTTCCAA
76296697 AACATAATTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.42, C:0.16, G:0.06, T:0.35
Consensus pattern (31 bp):
TTAGTCATATTAAAACGTCAATAATTTCCAA
Found at i:76297164 original size:18 final size:18
Alignment explanation
Indices: 76297137--76297184 Score: 78
Period size: 18 Copynumber: 2.7 Consensus size: 18
76297127 GGCCCATTGT
76297137 AGTAACAGTAAACAGTGC
1 AGTAACAGTAAACAGTGC
* *
76297155 AGTAATAGTAAACAGTGT
1 AGTAACAGTAAACAGTGC
76297173 AGTAACAGTAAA
1 AGTAACAGTAAA
76297185 TAGTATGCAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.48, C:0.10, G:0.21, T:0.21
Consensus pattern (18 bp):
AGTAACAGTAAACAGTGC
Found at i:76301500 original size:49 final size:49
Alignment explanation
Indices: 76301204--76301618 Score: 245
Period size: 49 Copynumber: 8.7 Consensus size: 49
76301194 ATTGTGGGCT
* * * *
76301204 AGTGTAAGA-CATGTCTAGGACAT-GCATCAGCCACA-TTACGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCAGTTATGATAGCC
* * * * *
76301250 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAG--ACGAGT-GCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGC-CTCAGTTATGA-TAGCC
* * ** * *
76301298 AGTGTAAGA-CATGTCTGGGGCAT-GCATCGGCCTC-GGGACG-TAAACC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCAGTTATGAT-AGCC
* * ** **
76301344 AGTGTAAGA-CATGTTTGGGACAT-GCATC-GACT-ATGAAATG-T-GTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCA-GTTATGATAGCC
* * * * * * *
76301388 AGTGTAAGATCATGTCTTGGACATGGCGTCAG-CACGGATATATGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCAG-T-TATGATAGCC
76301438 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCAGTTATGATAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCAGTTATGATAGCC
* ** * * * * * *
76301487 AGTGTAAGACCATGTTTGGGACATGGTGTCGGCAC-GAATATGTGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGC-CTCAGT-TATGATAGCC
* * * * *
76301537 AGTGTAAAACCATGTATGGGACATGGCATCAGCCTCGGTGATGATAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCAGTTATGATAGCC
*
76301586 AGTGTAAGACCATGTTTGGGACATGGCATCAGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGC
76301619 AACTTGCCCG
Statistics
Matches: 285, Mismatches: 61, Indels: 43
0.73 0.16 0.11
Matches are distributed among these distances:
44 11 0.04
45 16 0.06
46 57 0.20
47 27 0.09
48 25 0.09
49 77 0.27
50 69 0.24
51 3 0.01
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (49 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCAGTTATGATAGCC
Found at i:76301501 original size:99 final size:99
Alignment explanation
Indices: 76301388--76301619 Score: 349
Period size: 99 Copynumber: 2.3 Consensus size: 99
76301378 GAAATGTGTT
* * *
76301388 AGTGTAAGATCATGTCTT-GGACATGGCGTCAGCACGGATATATGAGAGCTAGTGTAAGACCATG
1 AGTGTAAGACCATGT-TTGGGACATGGCGTCAGCACGAATATATGAGAGCTAGTGTAAAACCATG
* *
76301452 TCTGGGACATGGCATCAGCCTCAGTTATGATAGCC
65 TATGGGACATGGCATCAGCCTCAGTGATGATAGCC
* * *
76301487 AGTGTAAGACCATGTTTGGGACATGGTGTCGGCACGAATATGTGAGAGCTAGTGTAAAACCATGT
1 AGTGTAAGACCATGTTTGGGACATGGCGTCAGCACGAATATATGAGAGCTAGTGTAAAACCATGT
* *
76301552 ATGGGACATGGCATCAGCCTCGGTGATGATAGTC
66 ATGGGACATGGCATCAGCCTCAGTGATGATAGCC
*
76301586 AGTGTAAGACCATGTTTGGGACATGGCATCAGCA
1 AGTGTAAGACCATGTTTGGGACATGGCGTCAGCA
76301620 ACTTGCCCGT
Statistics
Matches: 119, Mismatches: 13, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
98 2 0.02
99 117 0.98
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.25
Consensus pattern (99 bp):
AGTGTAAGACCATGTTTGGGACATGGCGTCAGCACGAATATATGAGAGCTAGTGTAAAACCATGT
ATGGGACATGGCATCAGCCTCAGTGATGATAGCC
Found at i:76303674 original size:50 final size:50
Alignment explanation
Indices: 76303555--76303949 Score: 387
Period size: 50 Copynumber: 7.8 Consensus size: 50
76303545 ATTGTGAGAA
* * *** *
76303555 CACATGTGTAGTACTATGTGCAGGCTACTATGTATTTAAGATGGTTTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGAT--TGTTAGGT
* *
76303607 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGT
* * * * * *
76303657 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAGCTTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTG-TTAGGT
* **
76303708 CACATGTGTAGTACTAAGTGCAGGCTATTACATGTACCAGATTGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGT
** * * * * * * *
76303758 TGCACGTATAGTACTAAGTTCAGGCTACTATGCGTACCCA-ATAGCTTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTA-CCAGATTG-TTAGGT
* * * * * * *
76303809 CACGTGTGTAGTACTAAGTGCAGCCTAGTACGTGTATCACATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGT
** *
76303859 CATGTGTGTAGTACTAAGTGTAGGCTACTATGTGTACCAGATTGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGT
* * *
76303909 CACCTATGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA
76303950 GAGCATCAGT
Statistics
Matches: 275, Mismatches: 64, Indels: 10
0.79 0.18 0.03
Matches are distributed among these distances:
50 163 0.59
51 77 0.28
52 35 0.13
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGT
Found at i:76303750 original size:101 final size:101
Alignment explanation
Indices: 76303606--76303949 Score: 447
Period size: 101 Copynumber: 3.4 Consensus size: 101
76303596 TGGTTTTAGG
76303606 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTAC
76303671 TAAGTGCAGGCTACTATGCGTACCCGATAGCTTCGA
66 TAAGTGCAGGCTACTATGCGTACCCGATAGCTTCGA
* * * * * *
76303707 TCACATGTGTAGTACTAAGTGCAGGCTATTACATGTACCAGATTGTTAGGTTGCACGTATAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTAC
* *
76303772 TAAGTTCAGGCTACTATGCGTACCCAATAGCTTCGA
66 TAAGTGCAGGCTACTATGCGTACCCGATAGCTTCGA
* * * * * ***
76303808 TCACGTGTGTAGTACTAAGTGCAGCCTAGTACGTGTATCACATGGTTAGGTCATGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTAC
* * * * * *
76303873 TAAGTGTAGGCTACTATGTGTACCAGATTG-TTAGG
66 TAAGTGCAGGCTACTATGCGTACCCGATAGCTTCGA
* * * *
76303908 TCACCTATGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
76303950 GAGCATCAGT
Statistics
Matches: 206, Mismatches: 37, Indels: 1
0.84 0.15 0.00
Matches are distributed among these distances:
100 37 0.18
101 169 0.82
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (101 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTAC
TAAGTGCAGGCTACTATGCGTACCCGATAGCTTCGA
Found at i:76303939 original size:24 final size:24
Alignment explanation
Indices: 76303865--76303940 Score: 75
Period size: 24 Copynumber: 3.1 Consensus size: 24
76303855 AGGTCATGTG
76303865 TGTAGTACTAAGTGTAGGCTACTA
1 TGTAGTACTAAGTGTAGGCTACTA
* *
76303889 TGT-GTACCAGATTGTTAGG-TCACCTA
1 TGTAGTACTA-AGTG-TAGGCT-A-CTA
*
76303915 TGTAGTACTAAGTGCAGGCTACTA
1 TGTAGTACTAAGTGTAGGCTACTA
76303939 TG
1 TG
76303941 CGTACCAGAG
Statistics
Matches: 41, Mismatches: 5, Indels: 12
0.71 0.09 0.21
Matches are distributed among these distances:
23 5 0.12
24 12 0.29
25 9 0.22
26 10 0.24
27 5 0.12
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.33
Consensus pattern (24 bp):
TGTAGTACTAAGTGTAGGCTACTA
Found at i:76306943 original size:27 final size:27
Alignment explanation
Indices: 76306913--76307053 Score: 176
Period size: 27 Copynumber: 5.2 Consensus size: 27
76306903 GGGTAAAATG
* *
76306913 GTAATTTTACCCTACAAGGGTATCTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
* *
76306940 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCA
** *
76306967 GTGTTTCTACCCTATAAGGGTATTTC-
1 GTAATTCTACCCTACAAGGGTATTTCA
* *
76306993 GTTAATTCTGCCCTACAAGGGTATTTCG
1 G-TAATTCTACCCTACAAGGGTATTTCA
76307021 GTAATTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
*
76307048 ATAATT
1 GTAATT
76307054 TTGTAAATTG
Statistics
Matches: 97, Mismatches: 15, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
26 1 0.01
27 95 0.98
28 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.36
Consensus pattern (27 bp):
GTAATTCTACCCTACAAGGGTATTTCA
Found at i:76306986 original size:54 final size:54
Alignment explanation
Indices: 76306912--76307053 Score: 196
Period size: 54 Copynumber: 2.6 Consensus size: 54
76306902 GGGGTAAAAT
* * *
76306912 GGTAATTTTACCCTACAAGGGTATCTCAGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTC
** * *
76306966 GGTGTTTCTACCCTATAAGGGTATTTC-GTTAATTCTGCCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCAG-TAATTCTACCCTACAAGGGTATTTC
*
76307020 GGTAATTCTACCCTACAAGGGTATTTCAATAATT
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATT
76307054 TTGTAAATTG
Statistics
Matches: 75, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
53 1 0.01
54 74 0.99
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.36
Consensus pattern (54 bp):
GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTC
Found at i:76307067 original size:27 final size:27
Alignment explanation
Indices: 76307037--76307135 Score: 83
Period size: 27 Copynumber: 3.7 Consensus size: 27
76307027 CTACCCTACA
*
76307037 AGGGTATTTCAATAATTTTGTAAATTG
1 AGGGTATTTCAATAATTTTGTAATTTG
** **
76307064 AGGGTAAAAT-GGTAATTTTGTAATTTG
1 AGGGT-ATTTCAATAATTTTGTAATTTG
* * **
76307091 AGGGTATTTCGATAAGTTTACAATTTG
1 AGGGTATTTCAATAATTTTGTAATTTG
* *
76307118 AGGGTATTTTAGTAATTT
1 AGGGTATTTCAATAATTT
76307136 CACAAATCAG
Statistics
Matches: 55, Mismatches: 15, Indels: 4
0.74 0.20 0.05
Matches are distributed among these distances:
26 2 0.04
27 51 0.93
28 2 0.04
ACGTcount: A:0.31, C:0.03, G:0.22, T:0.43
Consensus pattern (27 bp):
AGGGTATTTCAATAATTTTGTAATTTG
Found at i:76307080 original size:81 final size:81
Alignment explanation
Indices: 76306903--76307080 Score: 173
Period size: 81 Copynumber: 2.2 Consensus size: 81
76306893 TACGCACGAG
* * **
76306903 GGGTAAAATGGTAATTTTACCCTACAAGGGTATCTCAGTAATTCTACCCTACAGGGGTATTTCGG
1 GGGTAAAATGGTAATTCTACCCTACAAGGGTATCTCAGTAATTCTACCCTACAAGGGTATTTCAA
**
76306968 TGTTTCTACCCTATAA
66 TGTTTCTACAATATAA
** * * * *
76306984 GGGT-ATTTCGTTAATTCTGCCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCA
1 GGGTAAAAT-GGTAATTCTACCCTACAAGGGTATCTCAGTAATTCTACCCTACAAGGGTATTTCA
* * *
76307048 ATAATTTTGTA-AAT-TGA
65 AT--GTTTCTACAATATAA
76307065 GGGTAAAATGGTAATT
1 GGGTAAAATGGTAATT
76307081 TTGTAATTTG
Statistics
Matches: 75, Mismatches: 18, Indels: 8
0.74 0.18 0.08
Matches are distributed among these distances:
80 2 0.03
81 65 0.87
82 3 0.04
83 5 0.07
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.35
Consensus pattern (81 bp):
GGGTAAAATGGTAATTCTACCCTACAAGGGTATCTCAGTAATTCTACCCTACAAGGGTATTTCAA
TGTTTCTACAATATAA
Found at i:76307149 original size:27 final size:26
Alignment explanation
Indices: 76307119--76307214 Score: 120
Period size: 27 Copynumber: 3.6 Consensus size: 26
76307109 TACAATTTGA
*
76307119 GGGTATTTTAGTAATTTCACAAATCAG
1 GGGTATTTTAGTAATTTTACAAA-CAG
* * *
76307146 GGGTGTTTTGGTAATTTTACAAACTAT
1 GGGTATTTTAGTAATTTTACAAAC-AG
*
76307173 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTAGTAATTTTACAAA-CAG
76307200 GGGTATTTTAGTAAT
1 GGGTATTTTAGTAAT
76307215 ACTAGCCTAC
Statistics
Matches: 60, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
26 1 0.02
27 58 0.97
28 1 0.02
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.41
Consensus pattern (26 bp):
GGGTATTTTAGTAATTTTACAAACAG
Found at i:76308348 original size:27 final size:27
Alignment explanation
Indices: 76308326--76308377 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
76308316 AGGGGCATTT
*
76308326 CAGTCATTTTAGCACATAAGGGCAAAA
1 CAGTCATTTTACCACATAAGGGCAAAA
*
76308353 CAGTCATTTTACCTCATAAGGGCAA
1 CAGTCATTTTACCACATAAGGGCAA
76308378 GACAATTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.25
Consensus pattern (27 bp):
CAGTCATTTTACCACATAAGGGCAAAA
Found at i:76308388 original size:27 final size:27
Alignment explanation
Indices: 76308329--76308390 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
76308319 GGCATTTCAG
* *
76308329 TCATTTTAGCACATAAGGGCAAAACAG
1 TCATTTTACCACATAAGGGCAAAACAA
* *
76308356 TCATTTTACCTCATAAGGGCAAGACAA
1 TCATTTTACCACATAAGGGCAAAACAA
*
76308383 TTATTTTA
1 TCATTTTA
76308391 TCGATTAGGG
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.37, C:0.18, G:0.15, T:0.31
Consensus pattern (27 bp):
TCATTTTACCACATAAGGGCAAAACAA
Found at i:76313001 original size:49 final size:50
Alignment explanation
Indices: 76312921--76313167 Score: 282
Period size: 49 Copynumber: 4.9 Consensus size: 50
76312911 ATCTATTGTG
* * *
76312921 AGGTCACGTGTGTAGTACTAAATGCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
76312971 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * * * * * **
76313021 CGATCACGTGTGTAGTAATAAAGTGCAGGCTACTACATGTATCAGATGGTT
1 AGGTCACATGTGTAGTACT-AAGTGCAGGCTACTACGTGTACCAGATAATT
*
76313072 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * *
76313122 -GGTCGCATGTCTAGTACTAAGTGCAAGCTACTATGCGTACCAGATA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
76313168 GCTTTGGCTA
Statistics
Matches: 166, Mismatches: 28, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
49 82 0.49
50 29 0.17
51 32 0.19
52 23 0.14
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.28
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:76313098 original size:102 final size:100
Alignment explanation
Indices: 76312924--76313119 Score: 284
Period size: 102 Copynumber: 1.9 Consensus size: 100
76312914 TATTGTGAGG
* * * *
76312924 TCACGTGTGTAGTACTAAATGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTAATAAATGCAGGCTACTACATGTACCAGATAATTGGTCACATGTGTAGTACT
* *
76312989 AAGTGCAGGCTACTATGTGTACCCGATAACTTCGA
66 AAGTGCAGGCTACTACGTGTACCAGATAACTTCGA
* ** *
76313024 TCACGTGTGTAGTAATAAAGTGCAGGCTACTACATGTATCAGATGGTTAGGTCACGTGTGTAGTA
1 TCACGTGTGTAGTAATAAA-TGCAGGCTACTACATGTACCAGATAATT-GGTCACATGTGTAGTA
76313089 CTAAGTGCAGGCTACTACGTGTACCAGATAA
64 CTAAGTGCAGGCTACTACGTGTACCAGATAA
76313120 TTGGTCGCAT
Statistics
Matches: 84, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
100 18 0.21
101 23 0.27
102 43 0.51
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.29
Consensus pattern (100 bp):
TCACGTGTGTAGTAATAAATGCAGGCTACTACATGTACCAGATAATTGGTCACATGTGTAGTACT
AAGTGCAGGCTACTACGTGTACCAGATAACTTCGA
Found at i:76313185 original size:102 final size:102
Alignment explanation
Indices: 76312978--76313185 Score: 233
Period size: 102 Copynumber: 2.0 Consensus size: 102
76312968 ATTGGTCGCA
* * * *
76312978 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGATAACTTCGATCACGTGTGTAGTAATAAA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAACTTCGATCACATGTCTAGTAATAAA
* * * * *
76313043 GTGCAGGCTACTACATGTATCAGATGGTTAGGTCACG
66 GTGCAAGCTACTACACGTACCAGATGCTTAGGTCAAG
* * *
76313080 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT-GGTCGCATGTCTAGTACT-AA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAACTTCGATCACATGTCTAGTAATAAA
** *
76313142 GTGCAAGCTACTATGCGTACCAGATAGCTTTGGCTACAAG
66 GTGCAAGCTACTACACGTACCAGAT-GCTTAGG-T-CAAG
76313182 TGTG
1 TGTG
76313186 AAAATATGTG
Statistics
Matches: 88, Mismatches: 15, Indels: 6
0.81 0.14 0.06
Matches are distributed among these distances:
99 22 0.25
100 18 0.20
101 3 0.03
102 45 0.51
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (102 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAACTTCGATCACATGTCTAGTAATAAA
GTGCAAGCTACTACACGTACCAGATGCTTAGGTCAAG
Found at i:76315332 original size:51 final size:48
Alignment explanation
Indices: 76315256--76315441 Score: 187
Period size: 50 Copynumber: 3.8 Consensus size: 48
76315246 ATTGTGAGTA
* *
76315256 CACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCAATGACTTCGAT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTACTCAATG--TT-GGT
* *
76315307 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TCAGATGGTGAGGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTACTCA-AT-GT-TGGT
* * * *
76315357 CACGTGTGTAATACTAAGTGCAGGTTACTACGTGTAC-CGGATTGTTGGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTACTC--AATGTTGGT
* * *
76315406 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTA
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTA
76315442 TCAGATAGCT
Statistics
Matches: 115, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
49 33 0.29
50 43 0.37
51 37 0.32
52 2 0.02
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (48 bp):
CACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTACTCAATGTTGGT
Found at i:76315339 original size:28 final size:27
Alignment explanation
Indices: 76315308--76315391 Score: 72
Period size: 28 Copynumber: 3.2 Consensus size: 27
76315298 GACTTCGATC
76315308 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGG-TACT
* *
76315336 ACGTGTATCAG-A-T-GGTG-AGGT-C-
1 ACGTGTGT-AGTACTAAGTGCAGGTACT
*
76315358 ACGTGTGTAATACTAAGTGCAGGTTACT
1 ACGTGTGTAGTACTAAGTGCAGG-TACT
76315386 ACGTGT
1 ACGTGT
76315392 ACCGGATTGT
Statistics
Matches: 43, Mismatches: 5, Indels: 16
0.67 0.08 0.25
Matches are distributed among these distances:
21 1 0.02
22 8 0.19
23 2 0.05
24 4 0.09
25 6 0.14
26 4 0.09
27 2 0.05
28 14 0.33
29 2 0.05
ACGTcount: A:0.25, C:0.15, G:0.30, T:0.30
Consensus pattern (27 bp):
ACGTGTGTAGTACTAAGTGCAGGTACT
Found at i:76322034 original size:22 final size:22
Alignment explanation
Indices: 76322006--76322051 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
76321996 ATTCTCCAAG
76322006 ATAGACTCGAGGTCTGGCTATT
1 ATAGACTCGAGGTCTGGCTATT
76322028 ATAGACTCGAGGTCTGGCTATT
1 ATAGACTCGAGGTCTGGCTATT
76322050 AT
1 AT
76322052 CAGCTGCGAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (22 bp):
ATAGACTCGAGGTCTGGCTATT
Found at i:76323636 original size:18 final size:18
Alignment explanation
Indices: 76323613--76323648 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
76323603 TAACATATAA
76323613 AAGTATATAATACATACC
1 AAGTATATAATACATACC
76323631 AAGTATATAATACATACC
1 AAGTATATAATACATACC
76323649 TGACCAACTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.50, C:0.17, G:0.06, T:0.28
Consensus pattern (18 bp):
AAGTATATAATACATACC
Found at i:76323841 original size:39 final size:38
Alignment explanation
Indices: 76323773--76323979 Score: 200
Period size: 39 Copynumber: 5.3 Consensus size: 38
76323763 TCACCACCAA
* * *
76323773 AAAGCATGCGTGACTTTAAGCCCAGATATAATACCAACAT
1 AAAGCCTGCGGGAC-TT-AGCCCAGATATAATACCAGCAT
76323813 AAAGCCTGCGGGACTTTAGCCCAGATATAATACCAGCAT
1 AAAGCCTGCGGGAC-TTAGCCCAGATATAATACCAGCAT
* * * *
76323852 AAATGCCTTCGGGACTTAGCTC-GAATATAACACCAGCAC
1 AAA-GCCTGCGGGACTTAGCCCAG-ATATAATACCAGCAT
* * * * *
76323891 AGATGCCTTCGGGACTTAGCCCGGATATAACACCAGCAC
1 A-AAGCCTGCGGGACTTAGCCCAGATATAATACCAGCAT
** * *
76323930 AAATGCCTTTGGGACTTAGCCCGGATATAATACCAGCCT
1 AAA-GCCTGCGGGACTTAGCCCAGATATAATACCAGCAT
76323969 AAAGCCTGCGG
1 AAAGCCTGCGG
76323980 ACGTCATGTC
Statistics
Matches: 146, Mismatches: 16, Indels: 12
0.84 0.09 0.07
Matches are distributed among these distances:
38 8 0.05
39 111 0.76
40 27 0.18
ACGTcount: A:0.32, C:0.27, G:0.20, T:0.21
Consensus pattern (38 bp):
AAAGCCTGCGGGACTTAGCCCAGATATAATACCAGCAT
Found at i:76323997 original size:78 final size:77
Alignment explanation
Indices: 76323791--76323979 Score: 236
Period size: 78 Copynumber: 2.4 Consensus size: 77
76323781 CGTGACTTTA
* * * * * *
76323791 AGCCCAGATATAATACCAACATAAAGCCTGCGGGACTTTAGCCCAGATATAATACCAGCATAAAT
1 AGCCCGGATATAATACCAGCCTAAAGCCTGCGGGAC-TTAGCCCGGATATAACACCAGCACAAAT
76323856 GCCTTCGGGACTT
65 GCCTTCGGGACTT
* * * * *
76323869 AGCTCGAATATAACACCAGCAC-AGATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
1 AGCCCGGATATAATACCAGC-CTA-AAGCCTGCGGGACTTAGCCCGGATATAACACCAGCACAAA
*
76323933 TGCCTTTGGGACTT
64 TGCCTTCGGGACTT
76323947 AGCCCGGATATAATACCAGCCTAAAGCCTGCGG
1 AGCCCGGATATAATACCAGCCTAAAGCCTGCGG
76323980 ACGTCATGTC
Statistics
Matches: 91, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
77 9 0.10
78 71 0.78
79 11 0.12
ACGTcount: A:0.32, C:0.28, G:0.20, T:0.20
Consensus pattern (77 bp):
AGCCCGGATATAATACCAGCCTAAAGCCTGCGGGACTTAGCCCGGATATAACACCAGCACAAATG
CCTTCGGGACTT
Found at i:76329738 original size:18 final size:18
Alignment explanation
Indices: 76329715--76329750 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
76329705 TAACATATAA
76329715 AAGTATATAATACATACC
1 AAGTATATAATACATACC
76329733 AAGTATATAATACATACC
1 AAGTATATAATACATACC
76329751 TAACCAACTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.50, C:0.17, G:0.06, T:0.28
Consensus pattern (18 bp):
AAGTATATAATACATACC
Found at i:76329947 original size:39 final size:39
Alignment explanation
Indices: 76329881--76330081 Score: 226
Period size: 39 Copynumber: 5.1 Consensus size: 39
76329871 CCAAAAAGCA
*
76329881 TGCGGGACTTTAAGCCCGGATATAATACCATCATAAA-GCC
1 TGCGGGAC-TT-AGCCCGGATATAATACCAGCATAAATGCC
76329921 TGCGGGACTTTAGCCCGGATATAATACCAGCATAAATGCC
1 TGCGGGAC-TTAGCCCGGATATAATACCAGCATAAATGCC
** * * * *
76329961 TTTGGGACTTAGCCCGAATATAAGACGAGCACAAATGCC
1 TGCGGGACTTAGCCCGGATATAATACCAGCATAAATGCC
* ** ** *
76330000 TTCGGGACTTAGCCCAAATATAACGCCAGCACAAATGCC
1 TGCGGGACTTAGCCCGGATATAATACCAGCATAAATGCC
* *
76330039 TTCGGGACTTAGCCTGGATATAATACCAGCATAAA-GCC
1 TGCGGGACTTAGCCCGGATATAATACCAGCATAAATGCC
76330077 TGCGG
1 TGCGG
76330082 ACCTCATGTC
Statistics
Matches: 141, Mismatches: 19, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
38 7 0.05
39 114 0.81
40 20 0.14
ACGTcount: A:0.31, C:0.25, G:0.22, T:0.21
Consensus pattern (39 bp):
TGCGGGACTTAGCCCGGATATAATACCAGCATAAATGCC
Found at i:76334018 original size:40 final size:40
Alignment explanation
Indices: 76333874--76334041 Score: 153
Period size: 40 Copynumber: 4.2 Consensus size: 40
76333864 CAGAATACAA
* **
76333874 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
76333914 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
76333954 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * * *
76333994 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
76334034 CCGGATAT
1 CCGGATAT
76334042 CATTCAATTT
Statistics
Matches: 104, Mismatches: 21, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 2 0.02
40 102 0.98
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:76335804 original size:9 final size:9
Alignment explanation
Indices: 76335792--76335848 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
76335782 TTTGATAAAC
76335792 ATGATATGT
1 ATGATATGT
*
76335801 ATGATATGCAC
1 ATGATATG--T
*
76335812 ATGACATGT
1 ATGATATGT
*
76335821 ATGATATGCAC
1 ATGATATG--T
76335832 ATGATATGT
1 ATGATATGT
76335841 ATGATATG
1 ATGATATG
76335849 CACACGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:76335815 original size:20 final size:20
Alignment explanation
Indices: 76335790--76335852 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
76335780 ATTTTGATAA
76335790 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
76335810 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
76335830 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
76335850 ACA
1 ACA
76335853 CGAGATGTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:76335961 original size:23 final size:24
Alignment explanation
Indices: 76335906--76336024 Score: 181
Period size: 24 Copynumber: 5.0 Consensus size: 24
76335896 GAGGAAGTGC
76335906 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
76335930 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
76335954 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
76335977 AAAAAGGGCTT-TGCCCCAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTATT
*
76336001 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
76336025 ATGATAAAGC
Statistics
Matches: 89, Mismatches: 1, Indels: 9
0.90 0.01 0.09
Matches are distributed among these distances:
23 29 0.33
24 43 0.48
25 17 0.19
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:76335976 original size:47 final size:47
Alignment explanation
Indices: 76335907--76336003 Score: 178
Period size: 47 Copynumber: 2.1 Consensus size: 47
76335897 AGGAAGTGCA
76335907 AAAGGGCTTATGCCCCAGTTATT-AAAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTT-TGCCCCAGTTATT
76335954 AAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTTTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTTTGCCCCAGTTATT
76336001 AAA
1 AAA
76336004 AGAGGCTAGG
Statistics
Matches: 49, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
47 39 0.80
48 10 0.20
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.29
Consensus pattern (47 bp):
AAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTTTGCCCCAGTTATT
Found at i:76336254 original size:31 final size:31
Alignment explanation
Indices: 76336216--76336279 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
76336206 CGTTTACAAT
76336216 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
76336247 AAAGGCTTCGGCCCAGTGTTATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
76336278 AA
1 AA
76336280 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:76343540 original size:25 final size:25
Alignment explanation
Indices: 76343511--76343558 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
76343501 TTATAATATG
* *
76343511 AAAATGACCATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
76343536 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
76343559 GTTTATATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:76343609 original size:9 final size:9
Alignment explanation
Indices: 76343597--76343653 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
76343587 TTTGATAAAC
76343597 ATGATATGT
1 ATGATATGT
*
76343606 ATGATATGCAC
1 ATGATATG--T
*
76343617 ATGACATGT
1 ATGATATGT
*
76343626 ATGATATGCAC
1 ATGATATG--T
76343637 ATGATATGT
1 ATGATATGT
76343646 ATGATATG
1 ATGATATG
76343654 CACACGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:76343620 original size:20 final size:20
Alignment explanation
Indices: 76343595--76343657 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
76343585 ATTTTGATAA
76343595 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
76343615 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
76343635 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
76343655 ACA
1 ACA
76343658 CGAGATGTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:76343781 original size:47 final size:47
Alignment explanation
Indices: 76343712--76343809 Score: 171
Period size: 47 Copynumber: 2.1 Consensus size: 47
76343702 AGGAAGTGCA
76343712 AAAGGGCTTATGCCCCAGTTATT-AAAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTT-TGCCCCAGTTATT
76343759 AAAGGGCTTATGCCCCAGTTATTAAAAAAGGGCTTTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT-AAAAAGGGCTTTGCCCCAGTTATT
76343807 AAA
1 AAA
76343810 AGAGGCTAGG
Statistics
Matches: 49, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
47 23 0.47
48 16 0.33
49 10 0.20
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (47 bp):
AAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTTTGCCCCAGTTATT
Found at i:76343826 original size:25 final size:24
Alignment explanation
Indices: 76343711--76343830 Score: 174
Period size: 24 Copynumber: 5.0 Consensus size: 24
76343701 GAGGAAGTGC
76343711 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
76343735 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
76343759 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
76343782 AAAAAAGGGCTT-TGCCCCAGTTATT
1 --AAAAGGGCTTATGCCCCAGTTATT
*
76343807 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
76343831 ATGACAAAGC
Statistics
Matches: 89, Mismatches: 1, Indels: 11
0.88 0.01 0.11
Matches are distributed among these distances:
23 29 0.33
24 30 0.34
25 21 0.24
26 9 0.10
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:76344077 original size:31 final size:30
Alignment explanation
Indices: 76344023--76344085 Score: 90
Period size: 31 Copynumber: 2.1 Consensus size: 30
76344013 TGTTTCCAGT
76344023 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATG-AATATGA
** *
76344054 AAAGGCTTCGGCCCAGTGTTATGATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAATATGA
76344084 AA
1 AA
76344086 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 8 0.28
31 21 0.72
ACGTcount: A:0.35, C:0.16, G:0.24, T:0.25
Consensus pattern (30 bp):
AAAGGCTTCGGCCCAGTAATATGAATATGA
Found at i:76347411 original size:18 final size:18
Alignment explanation
Indices: 76347388--76347423 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
76347378 TAACATATAA
76347388 AAGTATATAATACATACC
1 AAGTATATAATACATACC
76347406 AAGTATATAATACATACC
1 AAGTATATAATACATACC
76347424 TGAGCAACTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.50, C:0.17, G:0.06, T:0.28
Consensus pattern (18 bp):
AAGTATATAATACATACC
Found at i:76347620 original size:39 final size:39
Alignment explanation
Indices: 76347554--76347754 Score: 226
Period size: 39 Copynumber: 5.1 Consensus size: 39
76347544 CCAAAAAGCA
76347554 TGCGGGACTTTAAGCCCGGATATAATACCAGCATAAA-GCC
1 TGCGGGAC-TT-AGCCCGGATATAATACCAGCATAAATGCC
*
76347594 TGCGGGACTTTAGCCCGGATATAATACCAGTATAAATGCC
1 TGCGGGAC-TTAGCCCGGATATAATACCAGCATAAATGCC
** * * * *
76347634 TTTGGGACTTAGCCCGAATATAACACGAGCACAAATGCC
1 TGCGGGACTTAGCCCGGATATAATACCAGCATAAATGCC
* ** * *
76347673 TTCGGGACTTAGCCCAAATATAACACCAGCACAAATGCC
1 TGCGGGACTTAGCCCGGATATAATACCAGCATAAATGCC
* * *
76347712 TTCGGGAGTTAGCCTGGATATAATACCAGCATAAA-GCC
1 TGCGGGACTTAGCCCGGATATAATACCAGCATAAATGCC
76347750 TGCGG
1 TGCGG
76347755 ACCTCATGTC
Statistics
Matches: 142, Mismatches: 18, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
38 7 0.05
39 115 0.81
40 20 0.14
ACGTcount: A:0.32, C:0.25, G:0.22, T:0.21
Consensus pattern (39 bp):
TGCGGGACTTAGCCCGGATATAATACCAGCATAAATGCC
Found at i:76353958 original size:40 final size:40
Alignment explanation
Indices: 76353885--76354109 Score: 208
Period size: 40 Copynumber: 5.7 Consensus size: 40
76353875 CCGCACCAAG
* * *
76353885 GCCTACGGGACTTAACCC-GATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATCACGATTTGCACAAAT
76353924 GCCTTCGGGTCTTAGCCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATCACGATTTGCACAAAT
** * * * *
76353964 GCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATCACGATTTGCACAAAT
* * * * *
76354004 GCCTTCGGGTCTTAGCCCGGATGT-AGCCACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATCA-CGATTTGCACAAAT
* * *
76354044 GCCTTCGGGTCTTAACCCGGTTAT-A--ATTTCCAGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATCACGATTTGCA-CA-AA-T
* *
76354084 GTCTTCGGGGCTTAGCCCGGATATCA
1 GCCTTCGGGTCTTAGCCCGGATATCA
76354110 TTCAATTTCT
Statistics
Matches: 153, Mismatches: 27, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
37 4 0.03
38 2 0.01
39 17 0.11
40 129 0.84
41 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.27
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATCACGATTTGCACAAAT
Found at i:76357058 original size:39 final size:39
Alignment explanation
Indices: 76356991--76357146 Score: 183
Period size: 39 Copynumber: 4.0 Consensus size: 39
76356981 AAAAAGCATG
* *
76356991 CGGGACTTTAAGCCTGGTTATAATACCAGCATAAA-GCCTGT
1 CGGGAC-TT-AGCCCGGATATAATACCAGCATAAATGCCT-T
*
76357032 -GGCACTTTAGCCCGGATATAATACCAGCATAAATGCCTT
1 CGGGAC-TTAGCCCGGATATAATACCAGCATAAATGCCTT
* * * * *
76357071 CGGGTCTTAGCCCGCATGTAACACCAGCACAAATGCCTT
1 CGGGACTTAGCCCGGATATAATACCAGCATAAATGCCTT
76357110 CGGGACTTAGCCCGGATATAATACCAGCATAAA-GCCT
1 CGGGACTTAGCCCGGATATAATACCAGCATAAATGCCT
76357147 GCGGACCTCA
Statistics
Matches: 99, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
38 4 0.04
39 81 0.82
40 14 0.14
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAATACCAGCATAAATGCCTT
Found at i:76357971 original size:8 final size:8
Alignment explanation
Indices: 76357955--76357997 Score: 50
Period size: 8 Copynumber: 5.1 Consensus size: 8
76357945 CAAAAGTATA
*
76357955 ATCTCATC
1 ATCTTATC
76357963 ATCTTATC
1 ATCTTATC
*
76357971 ACCTCTTATA
1 A--TCTTATC
76357981 ATCTTATC
1 ATCTTATC
76357989 ATCTTATC
1 ATCTTATC
76357997 A
1 A
76357998 CCTATTTCAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
8 23 0.77
10 7 0.23
ACGTcount: A:0.28, C:0.28, G:0.00, T:0.44
Consensus pattern (8 bp):
ATCTTATC
Found at i:76357980 original size:26 final size:26
Alignment explanation
Indices: 76357951--76358000 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
76357941 GTTTCAAAAG
76357951 TATAATCTCATCATCTTATCACCTCT
1 TATAATCTCATCATCTTATCACCTCT
*
76357977 TATAATCTTATCATCTTATCACCT
1 TATAATCTCATCATCTTATCACCT
76358001 ATTTCATACC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.28, G:0.00, T:0.44
Consensus pattern (26 bp):
TATAATCTCATCATCTTATCACCTCT
Found at i:76358729 original size:40 final size:40
Alignment explanation
Indices: 76358681--76358773 Score: 100
Period size: 40 Copynumber: 2.3 Consensus size: 40
76358671 CTCGTTATTG
76358681 CACACTTAGTGCC-TCATGTAGCCAAAGCTA-TTCCAACTCA
1 CACACTTAGTGCCAT-ATGTAGCCAAAGCTATTTCCAAC-CA
* * * * * *
76358721 CACACTTAGTACCATTTGTAGTCGAAGCTATTTCGAACCG
1 CACACTTAGTGCCATATGTAGCCAAAGCTATTTCCAACCA
76358761 CACACTTAGTGCC
1 CACACTTAGTGCC
76358774 GAACTTAATC
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
40 37 0.84
41 7 0.16
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.27
Consensus pattern (40 bp):
CACACTTAGTGCCATATGTAGCCAAAGCTATTTCCAACCA
Found at i:76359578 original size:19 final size:20
Alignment explanation
Indices: 76359534--76359579 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
76359524 AAGATGACAC
*
76359534 CAAATTAACTTTTTGTTTTA
1 CAAATTAACTTTTTATTTTA
**
76359554 TTAATTAAC-TTTTATTTTA
1 CAAATTAACTTTTTATTTTA
76359573 CAAATTA
1 CAAATTA
76359580 CCTTAATAAC
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.35, C:0.09, G:0.02, T:0.54
Consensus pattern (20 bp):
CAAATTAACTTTTTATTTTA
Found at i:76370023 original size:93 final size:93
Alignment explanation
Indices: 76369910--76370081 Score: 283
Period size: 93 Copynumber: 1.8 Consensus size: 93
76369900 CGCCCATAAG
* *
76369910 CGAACTCAGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTG
1 CGAACTCAGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
76369974 AACGAGCTCGGATGCCTAGTTACATCTCA
65 AACGAGCTCGGATGCCTAGTTACATCTCA
* *
76370003 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
76370068 ACGAGTTCGGATGC
66 ACGAGCTCGGATGC
76370082 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:76370073 original size:46 final size:46
Alignment explanation
Indices: 76369903--76370078 Score: 182
Period size: 46 Copynumber: 3.8 Consensus size: 46
76369893 TGTAACCCGC
* *
76369903 CCATAAGCGAACTCAGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCAT
* * *
76369949 CCATAAGTGAACTCGGACTCAACTGAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCGCAT
* *
76369999 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
76370042 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
76370079 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 12, Indels: 20
0.77 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 60 0.56
47 27 0.25
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:76370097 original size:46 final size:44
Alignment explanation
Indices: 76369954--76370097 Score: 123
Period size: 46 Copynumber: 3.1 Consensus size: 44
76369944 CGCATCCATA
* *
76369954 AGTGAACTCGGACTCAACTGAACGAGCTCGGATGCCTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT
* * * *
76370001 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCT
76370047 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CT
76370093 AGTGA
1 AGTGA
76370098 CATGTCACTT
Statistics
Matches: 78, Mismatches: 11, Indels: 16
0.74 0.10 0.15
Matches are distributed among these distances:
44 9 0.12
45 1 0.01
46 33 0.42
47 29 0.37
48 1 0.01
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCT
Found at i:76382703 original size:48 final size:48
Alignment explanation
Indices: 76382645--76383652 Score: 700
Period size: 48 Copynumber: 20.9 Consensus size: 48
76382635 TTGATGCATA
*
76382645 AGATACGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATG
*
76382693 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATG
* *
76382741 AGATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATG
* *
76382789 AGATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATG
* *
76382837 AGATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATG
* *
76382885 AGATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATG
*
76382933 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATATATG
* * *
76382983 ACATATGTATATGTGGTAAAGCTGAATGAGAT-ATGT---ATAT-T-TG
1 AGATATGTATATGTGGTAAAGCCGAATG-GCTAATGTGAAATATATATG
* * * * * ** * *
76383026 -G-TAAAGCCGA-ATG-GTTAATG-TGAAATATCTATATATGAGATATGCATAT-
1 AGAT-ATG--TATATGTGGTAAAGCCG-AATGGCTA-ATGTGAAATAT--ATATG
* * ** * * * * * *
76383075 -G-T-GGTA-A--AGCCAAATGGCTAATGTG-AAATATG-TATGAGATATG
1 AGATATGTATATGTGGTAAA-GCCGAATG-GCTAATGTGAAAT-ATATATG
* * * ** * * * * * * *
76383118 -CATATGTGGTAAAGCCG-AATGGCTAATGTG-AAATATG-TATGAGATATG
1 AGATATGT-AT-ATGTGGTAAAGCCGAATG-GCTAATGTGAAAT-ATATATG
* * * ** * * * * * * *
76383166 -TATATGTGGTAAAGCCG-AATGGCTAATGTG-AAATATG-TATGAGATATG
1 AGATATGT-AT-ATGTGGTAAAGCCGAATG-GCTAATGTGAAAT-ATATATG
* * * * * * * * *
76383214 -TATATGTGGTAAAGCT-G-AATGGCTAAT-GCGAA-AT-ATATATATATG
1 AGATATGT-AT-ATG-TGGTAAAGCCGAATGGCTAATGTGAAATATATATG
* *
76383259 AGATATGTATATGTGGTAAAGCTGAATGGTTAATGTGAAATATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG--A-A-ATATATATG
* *
76383311 AGATATGTATATGTGATAAAGCCGAATGGCTAATGCGAAATATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG--A-A-ATATATATG
* * *
76383363 AGATATGTATATATGGTAAAGCTGAATGGTTAATGTGAAATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATATATG
* *
76383413 AGATATGGATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATG
*
76383461 AGATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG--A-A-ATATATATG
76383513 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATG
*
76383561 AGATATGCATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATATATG
*
76383611 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATA
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATA
76383653 AGTAGGCGAT
Statistics
Matches: 837, Mismatches: 73, Indels: 100
0.83 0.07 0.10
Matches are distributed among these distances:
41 4 0.00
42 14 0.02
43 11 0.01
44 15 0.02
45 26 0.03
46 19 0.02
47 5 0.01
48 463 0.55
49 14 0.02
50 127 0.15
51 6 0.01
52 133 0.16
ACGTcount: A:0.37, C:0.07, G:0.25, T:0.31
Consensus pattern (48 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATG
Found at i:76382809 original size:96 final size:96
Alignment explanation
Indices: 76382645--76383652 Score: 1221
Period size: 96 Copynumber: 10.4 Consensus size: 96
76382635 TTGATGCATA
*
76382645 AGATACGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGT
76382710 AAAGCCGAATGGCTAATGTGAAATATGTATG
66 AAAGCCGAATGGCTAATGTGAAATATGTATG
* * *
76382741 AGATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGT
76382806 AAAGCCGAATGGCTAATGTGAAATATGTATG
66 AAAGCCGAATGGCTAATGTGAAATATGTATG
* * *
76382837 AGATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGT
76382902 AAAGCCGAATGGCTAATGTGAAATATGTATG
66 AAAGCCGAATGGCTAATGTGAAATATGTATG
* *
76382933 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATATATATATGACATATGTATATGTG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATATATGAGATATGTATATGTG
* * * *
76382998 GTAAAGCTGAATGAGAT-ATGT-ATATTTGGTA--
64 GTAAAGCCGAATG-GCTAATGTGAAATAT-GTATG
*** * * * ** * * *
76383029 A-AGCCG-A-ATG-GTTAATG-TGAAATATCT-A--T-ATATGAGATATG-CATATG------TG
1 AGATATGTATATGTGGTAAAGCCG-AATGGCTAATGTGAAAT-ATATATGAGATATGTATATGTG
*
76383078 GTAAAGCCAAATGGCTAATGTGAAATATGTATG
64 GTAAAGCCGAATGGCTAATGTGAAATATGTATG
* *
76383111 AGATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGT
76383176 AAAGCCGAATGGCTAATGTGAAATATGTATG
66 AAAGCCGAATGGCTAATGTGAAATATGTATG
* *
76383207 AGATATGTATATGTGGTAAAGCTGAATGGCTAATGCGAAATATATATATATGAGATATGTATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG--A-A-ATATATATGAGATATGTATATG
* * *
76383272 TGGTAAAGCTGAATGGTTAATGTGAAATATATATATATG
62 TGGTAAAGCCGAATGGCTAATGTG--A-A-ATATGTATG
* * *
76383311 AGATATGTATATGTGATAAAGCCGAATGGCTAATGCGAAATATATATATATGAGATATGTATATA
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG--A-A-ATATATATGAGATATGTATATG
* * *
76383376 TGGTAAAGCTGAATGGTTAATGTGAAATATATATATG
62 TGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATG
* * *
76383413 AGATATGGATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGT
*
76383478 AAAGCCGAATGGCTAATGTGAAATATATATATATG
66 AAAGCCGAATGGCTAATGTG--A-A-ATATGTATG
*
76383513 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGCATATGTGGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGT
*
76383578 AAAGCCGAATGG-TCAATGTGAAATATATATATG
66 AAAGCCGAATGGCT-AATGTG-AA-ATATGTATG
*
76383611 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATA
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATA
76383653 AGTAGGCGAT
Statistics
Matches: 812, Mismatches: 63, Indels: 72
0.86 0.07 0.08
Matches are distributed among these distances:
79 2 0.00
80 20 0.02
81 4 0.00
82 1 0.00
83 2 0.00
84 1 0.00
85 3 0.00
86 18 0.02
87 9 0.01
89 6 0.01
90 8 0.01
91 2 0.00
92 10 0.01
93 3 0.00
94 1 0.00
95 2 0.00
96 292 0.36
97 6 0.01
98 134 0.17
99 9 0.01
100 136 0.17
102 46 0.06
103 3 0.00
104 94 0.12
ACGTcount: A:0.37, C:0.07, G:0.25, T:0.31
Consensus pattern (96 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGT
AAAGCCGAATGGCTAATGTGAAATATGTATG
Found at i:76383019 original size:78 final size:79
Alignment explanation
Indices: 76382930--76383084 Score: 249
Period size: 78 Copynumber: 2.0 Consensus size: 79
76382920 TGAAATATGT
*
76382930 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATA-TATATATGACATATGTATA
1 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATACTATATATGACATATGCATA
76382994 TGTGGTAAAGCTGA
66 TGTGGTAAAGCTGA
* * * *
76383008 ATGAGATATGTATATTTGGTAAAGCCGAATGGTTAATGTGAAATATCTATATATGAGATATGCAT
1 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATA-CTATATATGACATATGCAT
76383073 ATGTGGTAAAGC
65 ATGTGGTAAAGC
76383085 CAAATGGCTA
Statistics
Matches: 70, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
78 42 0.60
80 28 0.40
ACGTcount: A:0.37, C:0.07, G:0.24, T:0.32
Consensus pattern (79 bp):
ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATACTATATATGACATATGCATA
TGTGGTAAAGCTGA
Found at i:76383046 original size:28 final size:28
Alignment explanation
Indices: 76382980--76383038 Score: 91
Period size: 28 Copynumber: 2.1 Consensus size: 28
76382970 AAATATATAT
* *
76382980 ATGACATATGTATATGTGGTAAAGCTGA
1 ATGAGATATGTATATGTGGTAAAGCCGA
*
76383008 ATGAGATATGTATATTTGGTAAAGCCGA
1 ATGAGATATGTATATGTGGTAAAGCCGA
76383036 ATG
1 ATG
76383039 GTTAATGTGA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.36, C:0.07, G:0.25, T:0.32
Consensus pattern (28 bp):
ATGAGATATGTATATGTGGTAAAGCCGA
Found at i:76383080 original size:52 final size:50
Alignment explanation
Indices: 76383008--76383652 Score: 916
Period size: 48 Copynumber: 12.9 Consensus size: 50
76382998 GTAAAGCTGA
* *
76383008 ATGAGATATGTATATTTGGTAAAGCCGAATGGTTAATGTGAAATATCTATAT
1 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATA--TATAT
* * *
76383060 ATGAGATATGCATATGTGGTAAAGCCAAATGGCTAATGTG-AA-ATATGT
1 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATAT
* *
76383108 ATGAGATATGCATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGT
1 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATAT
*
76383156 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGT
1 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATAT
* *
76383204 ATGAGATATGTATATGTGGTAAAGCTGAATGGCTAATGCGAAATATATATAT
1 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATATAT
* *
76383256 ATGAGATATGTATATGTGGTAAAGCTGAATGGTTAATGTGAAATATATATAT
1 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATATAT
* *
76383308 ATGAGATATGTATATGTGATAAAGCCGAATGGCTAATGCGAAATATATATAT
1 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATATAT
* * *
76383360 ATGAGATATGTATATATGGTAAAGCTGAATGGTTAATGTGAAATATATAT
1 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATAT
* *
76383410 ATGAGATATGGATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGT
1 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATAT
*
76383458 ATGAGATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATAT
1 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATATAT
76383510 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATAT
1 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATAT
*
76383558 ATGAGATATGCATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATAT
1 ATGAGATATGTATATGTGGTAAAGCCGAATGGCT-AATGTGAAATATATAT
*
76383608 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATA
1 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATA
76383653 AGTAGGCGAT
Statistics
Matches: 549, Mismatches: 32, Indels: 26
0.90 0.05 0.04
Matches are distributed among these distances:
47 1 0.00
48 223 0.41
49 5 0.01
50 95 0.17
51 7 0.01
52 218 0.40
ACGTcount: A:0.38, C:0.06, G:0.24, T:0.32
Consensus pattern (50 bp):
ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATAT
Found at i:76383129 original size:178 final size:172
Alignment explanation
Indices: 76382834--76383186 Score: 562
Period size: 178 Copynumber: 2.0 Consensus size: 172
76382824 TGAAATATGT
*
76382834 ATGAGATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGT
1 ATGAGATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGCATATGT
* *
76382899 GGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCT
66 GGTAAAGCCAAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCGAATGGCT
*
76382964 AATGCGAAATATATATATGACATATGTATATGTGGTAAAGCTGA
131 AATGCG-AA-ATATATATGACATATGTATATGTGGTAAAGCCGA
* * *
76383008 ATGAGATATGTATATTTGGTAAAGCCGAATGGTTAATGTGAAATATCTATATATGAGATATGCAT
1 ATGAGATATGCATATGTGGTAAAGCCGAATGGCTAATGTG-AA-A--TATATATGAGATATGCAT
76383073 ATGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCGAAT
62 ATGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCGAAT
* * *
76383138 GGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGA
127 GGCTAATGCGAAATATATATGACATATGTATATGTGGTAAAGCCGA
76383184 ATG
1 ATG
76383187 GCTAATGTGA
Statistics
Matches: 165, Mismatches: 10, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
174 37 0.22
175 2 0.01
176 35 0.21
177 2 0.01
178 89 0.54
ACGTcount: A:0.36, C:0.08, G:0.25, T:0.31
Consensus pattern (172 bp):
ATGAGATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGCATATGT
GGTAAAGCCAAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCGAATGGCT
AATGCGAAATATATATGACATATGTATATGTGGTAAAGCCGA
Found at i:76383136 original size:100 final size:100
Alignment explanation
Indices: 76383008--76383652 Score: 916
Period size: 100 Copynumber: 6.5 Consensus size: 100
76382998 GTAAAGCTGA
* *
76383008 ATGAGATATGTATATTTGGTAAAGCCGAATGGTTAATGTGAAATATCTATATATGAGATATGCAT
1 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATA--TATATATGAGATATGCAT
* *
76383073 ATGTGGTAAAGCCAAATGGCTAATGTG-AA-ATATGT
64 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATATAT
* * *
76383108 ATGAGATATGCATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAGATATGTATAT
1 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGCATAT
*
76383171 GTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGT
66 GTGGTAAAGCCGAATGGCTAATGTGAAATATATAT
* * *
76383204 ATGAGATATGTATATGTGGTAAAGCTGAATGGCTAATGCGAAATATATATATATGAGATATGTAT
1 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATATATATGAGATATGCAT
* *
76383269 ATGTGGTAAAGCTGAATGGTTAATGTGAAATATATATAT
64 ATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATATAT
* * *
76383308 ATGAGATATGTATATGTGATAAAGCCGAATGGCTAATGCGAAATATATATATATGAGATATGTAT
1 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATATATATGAGATATGCAT
* * *
76383373 ATATGGTAAAGCTGAATGGTTAATGTGAAATATATAT
64 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATATAT
* *
76383410 ATGAGATATGGATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAGATATGCATAT
1 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGCATAT
76383473 GTGGTAAAGCCGAATGGCTAATGTGAAATATATATAT
66 GTGGTAAAGCCGAATGGCTAATGTG-AA-ATATATAT
76383510 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATATATGAGATATGCATAT
1 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGCATAT
76383573 GTGGTAAAGCCGAATGG-TCAATGTGAAATATATAT
66 GTGGTAAAGCCGAATGGCT-AATGTGAAATATATAT
*
76383608 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATA
1 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATA
76383653 AGTAGGCGAT
Statistics
Matches: 505, Mismatches: 27, Indels: 26
0.91 0.05 0.05
Matches are distributed among these distances:
96 87 0.17
98 90 0.18
99 11 0.02
100 174 0.34
102 46 0.09
103 3 0.01
104 94 0.19
ACGTcount: A:0.38, C:0.06, G:0.24, T:0.32
Consensus pattern (100 bp):
ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGCATAT
GTGGTAAAGCCGAATGGCTAATGTGAAATATATAT
Found at i:76383911 original size:37 final size:37
Alignment explanation
Indices: 76383803--76383911 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
76383793 GGAAATATAT
* *
76383803 TCCGTGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
76383840 TTCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
76383877 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
76383912 CATCTGAGCT
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.23, C:0.18, G:0.30, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:76385616 original size:40 final size:40
Alignment explanation
Indices: 76385178--76385604 Score: 665
Period size: 40 Copynumber: 10.7 Consensus size: 40
76385168 GAGAGTTATA
76385178 TATATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTGGTGT
*
76385218 TATATTCGGGCTAAGTCCCGAAGAGCATTTGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTGGTGT
76385258 TATATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTGGTGT
* * *
76385298 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTGGTGT
* *
76385338 TGTATCCGGGCTAAGTCCCGAAGAGCATTTGTGTTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTGGTGT
*
76385378 TATATCCGGGCTAAGTCCCGAACAGCATTTGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTGGTGT
* * *
76385418 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTGGTGT
*
76385458 TGTATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTGGTGT
* * * *
76385498 TATATCCGGGCTAAGTCTCAAAGAGCATTTGTGCTAGAGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTGGTGT
* * **
76385538 TATATCAGGGTTAAGTCCCGAAGAGCATTCATGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTGGTGT
* *
76385578 TATATTCGGGCTAGGTCCCGAAGAGCA
1 TATATCCGGGCTAAGTCCCGAAGAGCA
76385605 ATCATGCTGG
Statistics
Matches: 349, Mismatches: 38, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 349 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (40 bp):
TATATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTGGTGT
Found at i:76388948 original size:48 final size:48
Alignment explanation
Indices: 76388890--76389052 Score: 290
Period size: 48 Copynumber: 3.4 Consensus size: 48
76388880 TTGATGCATA
* *
76388890 AGATATGTATATGTGGTAAAGCCAAATGGCTAATGTGAAATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
76388938 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
*
76388986 AGATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
*
76389034 AGATATGTATATGTTGTAA
1 AGATATGTATATGTGGTAA
76389053 CACCCTGAAT
Statistics
Matches: 110, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 110 1.00
ACGTcount: A:0.37, C:0.06, G:0.25, T:0.32
Consensus pattern (48 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
Found at i:76389961 original size:27 final size:27
Alignment explanation
Indices: 76389930--76390412 Score: 620
Period size: 27 Copynumber: 18.0 Consensus size: 27
76389920 AAAGTACTCC
76389930 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
76389957 AGATTTACAGAATT-CCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
76389983 CGATTTTTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
76390010 CGATTTACAAAATTACCATTTTA-CCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
76390036 C-ATTTTACAGAATTACCATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
76390063 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
76390090 C-AGTTTACAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
76390117 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
76390144 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
76390171 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
76390198 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
76390225 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* **
76390252 C-AGTTTATAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
76390279 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** * *
76390306 CGATTTGTAAAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
76390333 TGATTTACAGAATTACTGGTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
76390360 -AATTTACAAAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
76390386 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
76390413 TAATTGTGAA
Statistics
Matches: 398, Mismatches: 47, Indels: 22
0.85 0.10 0.05
Matches are distributed among these distances:
25 1 0.00
26 68 0.17
27 325 0.82
28 4 0.01
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.40
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:76390452 original size:27 final size:27
Alignment explanation
Indices: 76390430--76390615 Score: 232
Period size: 27 Copynumber: 7.0 Consensus size: 27
76390420 GAAATTACTA
*
76390430 AAATACCCCTGTAGGGTAGAATTTCCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
76390457 AAATACCCCTATA-GGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * * *
76390483 AAATACCCTTATAGGATAGAATTACCA
1 AAATACCCCTGTAGGGTAGAATTACCG
*
76390510 AAATACCCCTGT-GGGTAGAATTATCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
76390536 AAATACCCTTGTAGGGTAGAAATACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
76390563 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * * *
76390590 AGATACCCTTGTGGGGTAAAATTACC
1 AAATACCCCTGTAGGGTAGAATTACC
76390616 ATTTTGCCCC
Statistics
Matches: 136, Mismatches: 21, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
26 45 0.33
27 91 0.67
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.25
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACCG
Found at i:76390516 original size:80 final size:80
Alignment explanation
Indices: 76390422--76390613 Score: 235
Period size: 80 Copynumber: 2.4 Consensus size: 80
76390412 TTAATTGTGA
* * *
76390422 AATTACTAAAATACCCCTGTAGGGTAGAATT-TCCGAAATACCCCTATA-GGTAGAATTACTGAA
1 AATTACCAAAATACCCCTGT-GGGTAGAATTAT-CGAAATACCCCTATAGGGTAGAAATACCGAA
*
76390485 ATACCCTTATAGGATAG
64 ATACCCCTATAGGATAG
* *
76390502 AATTACCAAAATACCCCTGTGGGTAGAATTATCGAAATACCCTTGTAGGGTAGAAATACCGAAAT
1 AATTACCAAAATACCCCTGTGGGTAGAATTATCGAAATACCCCTATAGGGTAGAAATACCGAAAT
* *
76390567 ACCCCTGTAGGGTAG
66 ACCCCTATAGGATAG
* * * *
76390582 AATTACCGAGATACCCTTGTGGGGTAAAATTA
1 AATTACCAAAATACCCCTGT-GGGTAGAATTA
76390614 CCATTTTGCC
Statistics
Matches: 97, Mismatches: 12, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
79 23 0.24
80 64 0.66
81 10 0.10
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (80 bp):
AATTACCAAAATACCCCTGTGGGTAGAATTATCGAAATACCCCTATAGGGTAGAAATACCGAAAT
ACCCCTATAGGATAG
Found at i:76390626 original size:54 final size:53
Alignment explanation
Indices: 76390430--76390616 Score: 218
Period size: 53 Copynumber: 3.5 Consensus size: 53
76390420 GAAATTACTA
* * * * *
76390430 AAATACCCCTGTAGGGTAGAATTTCCGAAATACCCCTATA-GGTAGAATTACTG
1 AAATACCCTTGTAGGGTAAAATTACC-AAATACCCCTGTAGGGTAGAATTACCG
* * * *
76390483 AAATACCCTTATAGGATAGAATTACCAAAATACCCCTGT-GGGTAGAATTATCG
1 AAATACCCTTGTAGGGTAAAATTACC-AAATACCCCTGTAGGGTAGAATTACCG
76390536 AAATACCCTTGTAGGGTAGAAA-TACCGAAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCTTGTAGGGTA-AAATTACC-AAATACCCCTGTAGGGTAGAATTACCG
* *
76390590 AGATACCCTTGTGGGGTAAAATTACCA
1 AAATACCCTTGTAGGGTAAAATTACCA
76390617 TTTTGCCCCT
Statistics
Matches: 115, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
53 80 0.70
54 35 0.30
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.25
Consensus pattern (53 bp):
AAATACCCTTGTAGGGTAAAATTACCAAATACCCCTGTAGGGTAGAATTACCG
Found at i:76390852 original size:27 final size:26
Alignment explanation
Indices: 76390814--76390896 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
76390804 CGGAGGAAGC
*
76390814 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
76390841 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* * *
76390867 GTATTTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
76390894 GTT
1 GTT
76390897 GACCGATCGA
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 10 0.20
27 41 0.80
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:76391016 original size:22 final size:22
Alignment explanation
Indices: 76390984--76391042 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
76390974 CCCGTTATTA
*
76390984 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
76391006 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
76391028 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
76391043 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:76391229 original size:27 final size:27
Alignment explanation
Indices: 76391207--76391280 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 27
76391197 TAGGTGGGTT
*
76391207 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGGCTC
*
76391234 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGGCTC
* *
76391261 TGTCACGATATCTGT-TCTGG
1 TGCCACAATATCTGTATCTGG
76391281 CAGCCATGCT
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
26 5 0.12
27 36 0.86
28 1 0.02
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:76391407 original size:6 final size:6
Alignment explanation
Indices: 76391398--76391578 Score: 160
Period size: 6 Copynumber: 29.8 Consensus size: 6
76391388 TTGCATTCAC
* * *
76391398 ATTCTG ATTCTG ATTCTG -TCACGTA ATTCTG ATTCTG ATTTTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG
* *
76391447 -TTACTA ATACTG ATTCTG ATTCTG ATTCT- ATTACTG ATTCTG ATTCTG
1 ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
* * *
76391495 ATTCTG -TCATCTA ATTCTG ATTCTG ATTTTG -TTACTA ATAT-TG ATTCTG
1 ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATT-CTG AT-TCTG ATTCTG
76391544 ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCT
76391579 CATTTTGGTT
Statistics
Matches: 143, Mismatches: 16, Indels: 32
0.75 0.08 0.17
Matches are distributed among these distances:
5 12 0.08
6 116 0.81
7 12 0.08
8 3 0.02
ACGTcount: A:0.20, C:0.16, G:0.14, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:76391532 original size:79 final size:82
Alignment explanation
Indices: 76391398--76391578 Score: 280
Period size: 79 Copynumber: 2.2 Consensus size: 82
76391388 TTGCATTCAC
76391398 ATTCTGATTCTGATTCTGTCACGTAATTCTGATTCTGATTTTGATTCTGTTACTAATACTGATTC
1 ATTCTGATTCTGATTCTGTCACGTAATTCTGATTCTGA--TT-ATTCTGTTACTAATACTGATTC
76391463 TGATTCTGATTCTATTACTG
63 TGATTCTGATTCTATTACTG
*
76391483 ATTCTGATTCTGATTCTGTCATC-TAATTCTGATTCTGA-T-TT-TGTTACTAATATTGATTCTG
1 ATTCTGATTCTGATTCTGTCA-CGTAATTCTGATTCTGATTATTCTGTTACTAATACTGATTCTG
*
76391544 ATTCTGATTCTGTTACTG
65 ATTCTGATTCTATTACTG
76391562 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
76391579 CATTTTGGTT
Statistics
Matches: 93, Mismatches: 2, Indels: 8
0.90 0.02 0.08
Matches are distributed among these distances:
79 53 0.57
80 2 0.02
82 1 0.01
85 36 0.39
86 1 0.01
ACGTcount: A:0.20, C:0.16, G:0.14, T:0.50
Consensus pattern (82 bp):
ATTCTGATTCTGATTCTGTCACGTAATTCTGATTCTGATTATTCTGTTACTAATACTGATTCTGA
TTCTGATTCTATTACTG
Done.