Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 243 of 318
Found at i:76391545 original size:85 final size:85
Alignment explanation
Indices: 76391398--76391578 Score: 253
Period size: 85 Copynumber: 2.1 Consensus size: 85
76391388 TTGCATTCAC
**
76391398 ATTCTGATTCTGATTCTGTCACGTAATTCTGATTCTGATTTTGATTCTGTTACTAATACTGATTC
1 ATTCTGATTCTGATTCTGTCACGTAATTCTGATTCTGATTTTGATTCTAATACTAATACTGATTC
76391463 TGATTCTGATT-CT-ATTACTG
66 TGATTCTG-TTACTGATT-CTG
* * *
76391483 ATTCTGATTCTGATTCTGTCATC-TAATTCTGATTCTGATTTTG-TTACTAATATTGATTCTGAT
1 ATTCTGATTCTGATTCTGTCA-CGTAATTCTGATTCTGATTTTGATT-CTAATACTAATACTGAT
76391546 TCTGATTCTGTTACTGATTCTG
64 TCTGATTCTGTTACTGATTCTG
76391568 ATTCTGATTCT
1 ATTCTGATTCT
76391579 CATTTTGGTT
Statistics
Matches: 87, Mismatches: 5, Indels: 8
0.87 0.05 0.08
Matches are distributed among these distances:
84 4 0.05
85 79 0.91
86 4 0.05
ACGTcount: A:0.20, C:0.16, G:0.14, T:0.50
Consensus pattern (85 bp):
ATTCTGATTCTGATTCTGTCACGTAATTCTGATTCTGATTTTGATTCTAATACTAATACTGATTC
TGATTCTGTTACTGATTCTG
Found at i:76391596 original size:30 final size:30
Alignment explanation
Indices: 76391398--76391599 Score: 160
Period size: 30 Copynumber: 7.1 Consensus size: 30
76391388 TTGCATTCAC
* *
76391398 ATTCTGATTCTGATTCTGTCACGTAATTCTG
1 ATTCTGATTCTGATTTTGTTAC-TAATTCTG
* * *
76391429 ATTCTGATTTTGATTCTGTTACTAATACTG
1 ATTCTGATTCTGATTTTGTTACTAATTCTG
* * *
76391459 ATTCTGATTCTGATTCTATTACTGATTCTG
1 ATTCTGATTCTGATTTTGTTACTAATTCTG
**
76391489 ATTCTGATTCTG----TCAT-CTAATTCTG
1 ATTCTGATTCTGATTTTGTTACTAATTCTG
76391514 ATTC------TGATTTTGTTACTAATAT-TG
1 ATTCTGATTCTGATTTTGTTACTAAT-TCTG
* *
76391538 ATTCTGATTCTGATTCTGTTACTGATTCTG
1 ATTCTGATTCTGATTTTGTTACTAATTCTG
* *
76391568 ATTCTGATTCTCATTTTGGTT-CCAATTCTG
1 ATTCTGATTCTGATTTT-GTTACTAATTCTG
76391598 AT
1 AT
76391600 AATGTTTCTT
Statistics
Matches: 139, Mismatches: 18, Indels: 29
0.75 0.10 0.16
Matches are distributed among these distances:
19 2 0.01
23 2 0.01
24 11 0.08
25 13 0.09
26 2 0.01
29 1 0.01
30 85 0.61
31 23 0.17
ACGTcount: A:0.20, C:0.16, G:0.14, T:0.50
Consensus pattern (30 bp):
ATTCTGATTCTGATTTTGTTACTAATTCTG
Found at i:76393628 original size:27 final size:27
Alignment explanation
Indices: 76393585--76394077 Score: 588
Period size: 27 Copynumber: 18.4 Consensus size: 27
76393575 ATTACCAAAG
*
76393585 TACCC-CGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
76393611 TACCCTCGATTTACAGAATTATCG-TT
1 TACCCTCGATTTACAGAATTACCGTTT
** *
76393637 TACCCTCGATTTTTAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
76393664 TACCCTCGATTTACA-AATTA-CGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
76393689 TACCCTC-AGTTTACAGAATTACCGTTT
1 TACCCTCGA-TTTACAGAATTACCGTTT
*
76393716 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
**
76393743 TACCCTC-AGTTTACAGAATTACTATTT
1 TACCCTCGA-TTTACAGAATTACCGTTT
*
76393770 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
** * *
76393797 TACCCTCGATTTGTAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
76393824 TACCCTTGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* **
76393851 TACCCTC-AGTTTACGGAATTACTATTT
1 TACCCTCGA-TTTACAGAATTACCGTTT
*
76393878 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
76393905 TACCCTCAATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
76393932 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
** *
76393959 TACCCTCGATTTGTAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * * *
76393986 TATCCTTGATTTACAGAATTACTGGTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
76394013 TACCCTC-AGTTTACAAAATTATCGTTT
1 TACCCTCGA-TTTACAGAATTACCGTTT
*
76394040 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
76394067 TATCCTTGATT
1 TACCCTCGATT
76394078 GTGAAATTAC
Statistics
Matches: 398, Mismatches: 57, Indels: 23
0.83 0.12 0.05
Matches are distributed among these distances:
24 1 0.00
25 18 0.05
26 40 0.10
27 335 0.84
28 4 0.01
ACGTcount: A:0.27, C:0.22, G:0.10, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:76394195 original size:76 final size:80
Alignment explanation
Indices: 76394082--76394255 Score: 223
Period size: 76 Copynumber: 2.2 Consensus size: 80
76394072 TTGATTGTGA
* * * *
76394082 AATTACTGAAATACCCCTGTAGGGTAGAATTTCCGAAATACCCCTATAGGGTAGAATTTCCGAAA
1 AATTAC-GAAATACCCTTATAGGGTAGAATTTCCGAAATACCCCTATAGGGTAGAAATACCGAAA
76394147 TA-CCCTATA-GGTAG
65 TACCCCTATAGGGTAG
* *
76394161 AATTAC-AAATACCCTTATA-GGTAGAATTAT-CGAAATACCCTTGTAGGGTAGAAATACCGAAA
1 AATTACGAAATACCCTTATAGGGTAGAATT-TCCGAAATACCCCTATAGGGTAGAAATACCGAAA
*
76394223 TACCCCTGTAGGGTAG
65 TACCCCTATAGGGTAG
*
76394239 AATTACGAGATACCCTT
1 AATTACGAAATACCCTT
76394256 GTGGGGTAAA
Statistics
Matches: 83, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
76 39 0.47
77 18 0.22
78 11 0.13
79 15 0.18
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (80 bp):
AATTACGAAATACCCTTATAGGGTAGAATTTCCGAAATACCCCTATAGGGTAGAAATACCGAAAT
ACCCCTATAGGGTAG
Found at i:76394262 original size:26 final size:26
Alignment explanation
Indices: 76394082--76394270 Score: 197
Period size: 27 Copynumber: 7.2 Consensus size: 26
76394072 TTGATTGTGA
*
76394082 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTAC-GAAATACCCTTGTAGGGTAG
* * *
76394109 AATTTCCGAAATACCCCTATAGGGTAG
1 AA-TTACGAAATACCCTTGTAGGGTAG
* *
76394136 AATTTCCGAAATACCC-TATA-GGTAG
1 AA-TTACGAAATACCCTTGTAGGGTAG
*
76394161 AATTAC-AAATACCCTTATA-GGTAG
1 AATTACGAAATACCCTTGTAGGGTAG
76394185 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTA-CGAAATACCCTTGTAGGGTAG
* *
76394212 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTA-CGAAATACCCTTGTAGGGTAG
* * *
76394239 AATTACGAGATACCCTTGTGGGGTAA
1 AATTACGAAATACCCTTGTAGGGTAG
76394265 AATTAC
1 AATTAC
76394271 CATTTTGCCC
Statistics
Matches: 145, Mismatches: 12, Indels: 11
0.86 0.07 0.07
Matches are distributed among these distances:
23 8 0.06
24 17 0.12
25 8 0.06
26 39 0.27
27 70 0.48
28 3 0.02
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (26 bp):
AATTACGAAATACCCTTGTAGGGTAG
Found at i:76394282 original size:53 final size:54
Alignment explanation
Indices: 76394089--76394267 Score: 203
Period size: 53 Copynumber: 3.4 Consensus size: 54
76394079 TGAAATTACT
* * * *
76394089 GAAATACCCCTGTAGGGTAGAATTTCCGAAATACCCCTATAGGGTAGAATT-TCC
1 GAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTAT-C
* * * *
76394143 GAAATACCC-TATA-GGTAGAATTA-C-AAATACCCTTATA-GGTAGAATTATC
1 GAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTATC
76394192 GAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTA-C
1 GAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTATC
* *
76394245 GAGATACCCTTGTGGGGTA-AAAT
1 GAAATACCCTTGTAGGGTAGAAAT
76394268 TACCATTTTG
Statistics
Matches: 110, Mismatches: 9, Indels: 14
0.83 0.07 0.11
Matches are distributed among these distances:
49 19 0.17
50 16 0.15
51 10 0.09
52 14 0.13
53 32 0.29
54 19 0.17
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26
Consensus pattern (54 bp):
GAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTATC
Found at i:76394508 original size:27 final size:26
Alignment explanation
Indices: 76394470--76394552 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
76394460 CGGAGGAAGC
*
76394470 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
76394497 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* * *
76394523 GTATTTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
76394550 GTT
1 GTT
76394553 GACCGATCGA
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 10 0.20
27 41 0.80
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:76394672 original size:22 final size:22
Alignment explanation
Indices: 76394640--76394698 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
76394630 CCCGTTATTA
*
76394640 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
76394662 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
76394684 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
76394699 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:76394884 original size:27 final size:27
Alignment explanation
Indices: 76394862--76394935 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 27
76394852 TAGGTGGGTT
*
76394862 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGGCTC
*
76394889 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGGCTC
* *
76394916 TGTCACGATATCTGT-TCTGG
1 TGCCACAATATCTGTATCTGG
76394936 CAGCCATGCT
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
26 5 0.12
27 36 0.86
28 1 0.02
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:76395062 original size:6 final size:6
Alignment explanation
Indices: 76395053--76395236 Score: 170
Period size: 6 Copynumber: 30.8 Consensus size: 6
76395043 TTGCATTCAC
* *
76395053 ATTCTG ATTCTG ATTCTG -TCACGTA ATTCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG
* *
76395102 -TTACTA ATACTG ATTCTG ATTCTG ATTCT- ATTCTG ATTCTG ATTCTG
1 ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
76395149 ATTCTG -TCATCTA ATTCTA ATTCTG ATTCTG ATTCTG -TTACTA ATAT-TG
1 ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG AT-TCTG
76395198 ATT-TG ATTCTG ATTCTG -TTACTG ATTC-G ATTCTG ATTCT
1 ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCT
76395237 CATTTTGGTT
Statistics
Matches: 150, Mismatches: 12, Indels: 32
0.77 0.06 0.16
Matches are distributed among these distances:
5 24 0.16
6 114 0.76
7 9 0.06
8 3 0.02
ACGTcount: A:0.21, C:0.17, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:76395141 original size:23 final size:24
Alignment explanation
Indices: 76395053--76395236 Score: 170
Period size: 23 Copynumber: 7.7 Consensus size: 24
76395043 TTGCATTCAC
* *
76395053 ATTCTGATTCTGATTCTG-TCACGTA
1 ATTCTGATTCTGATTCTGAT-TC-TG
76395078 ATTCTGATTCTGATTCTGATTCTG
1 ATTCTGATTCTGATTCTGATTCTG
* *
76395102 -TTACTAATACTGATTCTGATTCTG
1 ATT-CTGATTCTGATTCTGATTCTG
76395126 ATTCT-ATTCTGATTCTGATTCTG
1 ATTCTGATTCTGATTCTGATTCTG
* *
76395149 ATTCTG-TCATCTAATTCTAATTCTG
1 ATTCTGAT--TCTGATTCTGATTCTG
*
76395174 ATTCTGATTCTG-TTACTAATAT-TG
1 ATTCTGATTCTGATT-CTGAT-TCTG
76395198 ATT-TGATTCTGATTCTG-TTACTG
1 ATTCTGATTCTGATTCTGATT-CTG
76395221 ATTC-GATTCTGATTCT
1 ATTCTGATTCTGATTCT
76395237 CATTTTGGTT
Statistics
Matches: 137, Mismatches: 9, Indels: 28
0.79 0.05 0.16
Matches are distributed among these distances:
21 1 0.01
22 1 0.01
23 54 0.39
24 37 0.27
25 42 0.31
26 2 0.01
ACGTcount: A:0.21, C:0.17, G:0.14, T:0.49
Consensus pattern (24 bp):
ATTCTGATTCTGATTCTGATTCTG
Found at i:76395188 original size:84 final size:84
Alignment explanation
Indices: 76395053--76395236 Score: 302
Period size: 84 Copynumber: 2.2 Consensus size: 84
76395043 TTGCATTCAC
*
76395053 ATTCTGATTCTGATTCTGTCACGTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
1 ATTCTGATTCTGATTCTGTCACGTAATTCTAATTCTGATTCTGATTCTGTTACTAATACTGATT-
76395118 TGATTCTGATTCTATT-CTG
65 TGATTCTGATTCTATTACTG
*
76395137 ATTCTGATTCTGATTCTGTCATC-TAATTCTAATTCTGATTCTGATTCTGTTACTAATATTGATT
1 ATTCTGATTCTGATTCTGTCA-CGTAATTCTAATTCTGATTCTGATTCTGTTACTAATACTGATT
*
76395201 TGATTCTGATTCTGTTACTG
65 TGATTCTGATTCTATTACTG
76395221 ATTC-GATTCTGATTCT
1 ATTCTGATTCTGATTCT
76395237 CATTTTGGTT
Statistics
Matches: 95, Mismatches: 3, Indels: 5
0.92 0.03 0.05
Matches are distributed among these distances:
83 27 0.28
84 67 0.71
85 1 0.01
ACGTcount: A:0.21, C:0.17, G:0.14, T:0.49
Consensus pattern (84 bp):
ATTCTGATTCTGATTCTGTCACGTAATTCTAATTCTGATTCTGATTCTGTTACTAATACTGATTT
GATTCTGATTCTATTACTG
Found at i:76397399 original size:29 final size:29
Alignment explanation
Indices: 76397366--76397439 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
76397356 GTGACGAGAT
76397366 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
76397395 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
76397424 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
76397440 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:76397455 original size:29 final size:29
Alignment explanation
Indices: 76397423--76397498 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
76397413 CTGGAAATAT
* *
76397423 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
** * * *
76397452 ATGGCACTGTGTGTGCGGGCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
76397481 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
76397499 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.22, C:0.20, G:0.36, T:0.22
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Found at i:76397466 original size:58 final size:58
Alignment explanation
Indices: 76397366--76397498 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
76397356 GTGACGAGAT
* * * * * *
76397366 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT-GAAATCACA
* * ** * * *
76397424 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
76397482 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
76397499 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (58 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
Found at i:76402734 original size:29 final size:29
Alignment explanation
Indices: 76402672--76402774 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
76402662 GTGACGAGAT
* * *
76402672 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
76402701 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
76402730 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
76402759 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
76402775 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:76410731 original size:29 final size:29
Alignment explanation
Indices: 76410669--76410771 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
76410659 GTGACGAGAT
* * *
76410669 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
76410698 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
76410727 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
76410756 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
76410772 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:76415216 original size:22 final size:22
Alignment explanation
Indices: 76415191--76415266 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
76415181 AAGTGTATAT
76415191 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * **
76415213 ATGTGATGAATG-TGAATGTGTATA
1 ATGTGAT-AAGGCCGAATG-G-CCA
*
76415237 TATGTGATAAGGCCGAATGGCCG
1 -ATGTGATAAGGCCGAATGGCCA
76415260 ATGTGAT
1 ATGTGAT
76415267 GGATGTGAAG
Statistics
Matches: 40, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
22 19 0.47
23 4 0.10
24 5 0.12
25 12 0.30
ACGTcount: A:0.30, C:0.11, G:0.32, T:0.28
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:76415223 original size:47 final size:47
Alignment explanation
Indices: 76415169--76415341 Score: 283
Period size: 47 Copynumber: 3.7 Consensus size: 47
76415159 ATGATGAAAT
76415169 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATG
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATG
* *
76415216 TGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCGATG
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATG
* * *
76415263 TGATGGATGTGAAGGTGTATATATGTGATAAGGCCAAATGGCCAATG
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATG
* *
76415310 TGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TGATGAATGTGAAAGTGTATATATGTGATAAG
76415342 TCCCGAAGGG
Statistics
Matches: 118, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 118 1.00
ACGTcount: A:0.33, C:0.07, G:0.31, T:0.29
Consensus pattern (47 bp):
TGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATG
Found at i:76415254 original size:25 final size:25
Alignment explanation
Indices: 76415183--76415255 Score: 73
Period size: 25 Copynumber: 3.0 Consensus size: 25
76415173 GAATGTGAAA
76415183 GTGTATATATGTGATAAGGCCGAAT
1 GTGTATATATGTGATAAGGCCGAAT
** * *
76415208 G-G-CCA-ATGTGATGAATG-TGAAT
1 GTGTATATATGTGAT-AAGGCCGAAT
76415230 GTGTATATATGTGATAAGGCCGAAT
1 GTGTATATATGTGATAAGGCCGAAT
76415255 G
1 G
76415256 GCCGATGTGA
Statistics
Matches: 35, Mismatches: 8, Indels: 10
0.66 0.15 0.19
Matches are distributed among these distances:
22 12 0.34
23 5 0.14
24 5 0.14
25 13 0.37
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (25 bp):
GTGTATATATGTGATAAGGCCGAAT
Found at i:76416935 original size:39 final size:38
Alignment explanation
Indices: 76416765--76416922 Score: 192
Period size: 39 Copynumber: 4.0 Consensus size: 38
76416755 ACGACTAGCT
* * *
76416765 CAAATGCCTTCGGGAC-AAACTCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAAC-CCGATT-TATTAACTCGCA
* * *
76416805 CGAATGCCTTCGGGACTTAACCCGGGTTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAACCC-GATTTATTAACTCGCA
76416845 CAAATGCCTTCGGGCTTAACCCAGATTTATTAACTCGCA
1 CAAATGCCTTCGGGCTTAACCC-GATTTATTAACTCGCA
76416884 CAAATGCCTTCGGGCTTAACCCGTATTTATTAACTCGCA
1 CAAATGCCTTCGGGCTTAACCCG-ATTTATTAACTCGCA
76416923 TGAACGCCTT
Statistics
Matches: 109, Mismatches: 6, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
38 1 0.01
39 59 0.54
40 42 0.39
41 7 0.06
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.27
Consensus pattern (38 bp):
CAAATGCCTTCGGGCTTAACCCGATTTATTAACTCGCA
Found at i:76421487 original size:39 final size:39
Alignment explanation
Indices: 76421440--76421622 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
76421430 AATGTTCGAG
76421440 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
76421479 TGATATCCGGGCTAAGCCCGAAGGCAATTGGGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
76421518 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* ** *
76421557 TGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
76421597 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
76421623 GTTTGAACGA
Statistics
Matches: 126, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.70
40 38 0.30
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:76428162 original size:77 final size:79
Alignment explanation
Indices: 76428032--76428187 Score: 221
Period size: 77 Copynumber: 2.0 Consensus size: 79
76428022 ACGACTAGCT
*
76428032 CAAATGCCTTCGGGACAAACCCCGGTTATAGTAACTCGCACGAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACAAACCCCGGTTATAGTAACTCGCACAAATGCCTTCGGG-CTTAACCCGG
76428097 -TTTAGTAACTCGCA
65 ATTTAGTAACTCGCA
** *
76428111 CAAATGCCTTCGGG-CTTA-CCCGGATT-TATTAACTCGCACAAATGCCTTCGGGCTTAACCCGG
1 CAAATGCCTTCGGGACAAACCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGCTTAACCCGG
*
76428173 ATTTATTAACTCGCA
65 ATTTAGTAACTCGCA
76428188 TGAACGCCTT
Statistics
Matches: 70, Mismatches: 5, Indels: 6
0.86 0.06 0.07
Matches are distributed among these distances:
76 10 0.14
77 42 0.60
78 4 0.06
79 14 0.20
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.26
Consensus pattern (79 bp):
CAAATGCCTTCGGGACAAACCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGCTTAACCCGGA
TTTAGTAACTCGCA
Found at i:76428200 original size:39 final size:39
Alignment explanation
Indices: 76428032--76428187 Score: 212
Period size: 39 Copynumber: 4.0 Consensus size: 39
76428022 ACGACTAGCT
* *
76428032 CAAATGCCTTCGGGAC-AAACCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAA-CCCGGATT-TATTAACTCGCA
* *
76428072 CGAATGCCTTCGGGACTTAACCCGG-TTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAACCCGGATTTATTAACTCGCA
76428111 CAAATGCCTTCGGGCTT-ACCCGGATTTATTAACTCGCA
1 CAAATGCCTTCGGGCTTAACCCGGATTTATTAACTCGCA
76428149 CAAATGCCTTCGGGCTTAACCCGGATTTATTAACTCGCA
1 CAAATGCCTTCGGGCTTAACCCGGATTTATTAACTCGCA
76428188 TGAACGCCTT
Statistics
Matches: 109, Mismatches: 4, Indels: 7
0.91 0.03 0.06
Matches are distributed among these distances:
37 6 0.06
38 33 0.30
39 46 0.42
40 22 0.20
41 2 0.02
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAACCCGGATTTATTAACTCGCA
Found at i:76430921 original size:43 final size:43
Alignment explanation
Indices: 76430873--76431210 Score: 344
Period size: 43 Copynumber: 7.9 Consensus size: 43
76430863 ATGTGTTCTT
* *
76430873 GTGTAAGACCATGTCTGGGACATTGGTATCGATATGTGATTAC
1 GTGTAAGACCATGTCTGGGACGTTGGCATCGATATGTGATTAC
* * * *
76430916 ATGTAAGACCACGTCTGAGATGTTGGCATCGATATGTGATTAC
1 GTGTAAGACCATGTCTGGGACGTTGGCATCGATATGTGATTAC
* * *
76430959 GTGTAAGA-CATTATTTGGGACAG-TGGCATCGATATGTG-TTCTC
1 GTGTAAGACCA-TGTCTGGGAC-GTTGGCATCGATATGTGATT-AC
* * * *
76431002 ATGTAAGACCATGCCTGGGACGTTGGCATTGATATGTGATTAT
1 GTGTAAGACCATGTCTGGGACGTTGGCATCGATATGTGATTAC
*
76431045 GTGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTAC
1 GTGTAAGACCATGTCTGGGACGTTGGCATCGATATGTGATTAC
* * * *
76431088 GTGTAAGACCTTGTCTAGGATAG-TGGCATCGATATGTG-TTCTC
1 GTGTAAGACCATGTCTGGGA-CGTTGGCATCGATATGTGATT-AC
* * * * *
76431131 ATGTAAGACCATGTTTGGGATGTTAGCATCAATATGTGATTAC
1 GTGTAAGACCATGTCTGGGACGTTGGCATCGATATGTGATTAC
* * ***
76431174 GTGTAAGACCACGTTTAATACGTTGGCATCGATATGT
1 GTGTAAGACCATGTCTGGGACGTTGGCATCGATATGT
76431211 AATTCCAATA
Statistics
Matches: 239, Mismatches: 46, Indels: 20
0.78 0.15 0.07
Matches are distributed among these distances:
42 8 0.03
43 223 0.93
44 8 0.03
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.33
Consensus pattern (43 bp):
GTGTAAGACCATGTCTGGGACGTTGGCATCGATATGTGATTAC
Found at i:76431083 original size:129 final size:129
Alignment explanation
Indices: 76430853--76431210 Score: 509
Period size: 129 Copynumber: 2.8 Consensus size: 129
76430843 CATTATTGAC
* ** * * *
76430853 TGGCATTGATATGTGTTCTTGTGTAAGACCATGTCTGGGACATTGGTATCGATATGTGATTACAT
1 TGGCATCGATATGTGTTCTCATGTAAGACCATGTCTGGGACGTTGGCATCGATATGTGATTACGT
* * *
76430918 GTAAGACCACGTCTGAGATGTTGGCATCGATATGTGATTACGTGTAAGACATTATTTGGGACAG
66 GTAAGACCACGTCTGAGACGTTGGCATCGATATGTGATTACGTGTAAGACATTATCTAGGACAG
* * *
76430982 TGGCATCGATATGTGTTCTCATGTAAGACCATGCCTGGGACGTTGGCATTGATATGTGATTATGT
1 TGGCATCGATATGTGTTCTCATGTAAGACCATGTCTGGGACGTTGGCATCGATATGTGATTACGT
* * * *
76431047 GTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACGTGTAAGACCTTGTCTAGGATAG
66 GTAAGACCACGTCTGAGACGTTGGCATCGATATGTGATTACGTGTAAGACATTATCTAGGACAG
* * * *
76431111 TGGCATCGATATGTGTTCTCATGTAAGACCATGTTTGGGATGTTAGCATCAATATGTGATTACGT
1 TGGCATCGATATGTGTTCTCATGTAAGACCATGTCTGGGACGTTGGCATCGATATGTGATTACGT
* * *
76431176 GTAAGACCACGTTTAATACGTTGGCATCGATATGT
66 GTAAGACCACGTCTGAGACGTTGGCATCGATATGT
76431211 AATTCCAATA
Statistics
Matches: 202, Mismatches: 27, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
129 202 1.00
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.34
Consensus pattern (129 bp):
TGGCATCGATATGTGTTCTCATGTAAGACCATGTCTGGGACGTTGGCATCGATATGTGATTACGT
GTAAGACCACGTCTGAGACGTTGGCATCGATATGTGATTACGTGTAAGACATTATCTAGGACAG
Found at i:76431246 original size:56 final size:56
Alignment explanation
Indices: 76431176--76431350 Score: 262
Period size: 56 Copynumber: 3.1 Consensus size: 56
76431166 GTGATTACGT
* *
76431176 GTAAGACCACGTTTAATACGTTGGCATCGATATGTAATTCCAATATGTGTGTGTAA
1 GTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCCAATATGTGTGTGCAA
*
76431232 GTAAGACCACGTTTAATACGTTGTCATCGATATGTGATTCCAATATGTGTGTGCAA
1 GTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCCAATATGTGTGTGCAA
* * * * * *
76431288 GTAAGAACACGTTTAATATGTTGGCATCGATATGTGA-TCCGATATGTGTTTACGA
1 GTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCCAATATGTGTGTGCAA
76431343 GTAAGACC
1 GTAAGACC
76431351 CTATCTAGGA
Statistics
Matches: 108, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
55 21 0.19
56 87 0.81
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (56 bp):
GTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCCAATATGTGTGTGCAA
Found at i:76437353 original size:25 final size:23
Alignment explanation
Indices: 76437312--76437360 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 23
76437302 TTAGTATTGT
76437312 ATTTAATTTTAATTTTTATTTTC
1 ATTTAATTTTAATTTTTATTTTC
*
76437335 ATTTCAATTTTATTATTTTATTTTC
1 ATTT-AATTTTAAT-TTTTATTTTC
76437360 A
1 A
76437361 AAAACATATC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 4 0.17
24 8 0.35
25 11 0.48
ACGTcount: A:0.27, C:0.06, G:0.00, T:0.67
Consensus pattern (23 bp):
ATTTAATTTTAATTTTTATTTTC
Found at i:76440275 original size:13 final size:13
Alignment explanation
Indices: 76440259--76440291 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
76440249 TTTAATTAAA
*
76440259 TTAGTTAATTAGT
1 TTAGATAATTAGT
76440272 TTAGATAATTAGT
1 TTAGATAATTAGT
76440285 TTA-ATAA
1 TTAGATAA
76440292 ACAAACACTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:76442121 original size:42 final size:42
Alignment explanation
Indices: 76442016--76442180 Score: 179
Period size: 43 Copynumber: 3.9 Consensus size: 42
76442006 GAATGCTCGA
** ***
76442016 ACAATGCCAACATCCCAGACATGGTCTTACATTTAATCAAAT
1 ACAATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAAT
* *
76442058 ATCAATGCCACTGTCCCAGACAGGGTCTTACACGAAATCAAAT
1 A-CAATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAAT
* * *
76442101 ACGATGCCAATGTCTCAGACATGGTCTTACACATAAATCATAAGT
1 ACAATGCCAATGTCCCAGACATGGTCTTACAC-GAAATCA-AA-T
* *
76442146 -CAATGCCAACGTCCCAGACATGGTCTCACACGAAA
1 ACAATGCCAATGTCCCAGACATGGTCTTACACGAAA
76442181 ACACAAATCG
Statistics
Matches: 102, Mismatches: 17, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
42 28 0.27
43 44 0.43
44 29 0.28
45 1 0.01
ACGTcount: A:0.36, C:0.27, G:0.15, T:0.22
Consensus pattern (42 bp):
ACAATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAAT
Found at i:76447535 original size:44 final size:44
Alignment explanation
Indices: 76447393--76447551 Score: 166
Period size: 43 Copynumber: 3.7 Consensus size: 44
76447383 TGCTCGTACA
* * * *
76447393 ATGCCAACGTCCCAGGCATGATCTTACATGT-AATCAAATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCAAATATCG
* * * *
76447436 ATGCCACTGTCCCAGATAGGGTCTTACAC-AAAATCAAATAT-G
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCAAATATCG
76447478 ATGCCAATGTCCCAGACATGGTCTTACACGTAAAT--AATAAGTCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCAAAT-A-TCG
* * *
76447522 ATGCCAATGTCCCAAACGTGGTATTACACG
1 ATGCCAATGTCCCAGACATGGTCTTACACG
76447552 AAAACACATA
Statistics
Matches: 96, Mismatches: 15, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
41 3 0.03
42 28 0.29
43 37 0.39
44 28 0.29
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.25
Consensus pattern (44 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCAAATATCG
Found at i:76454590 original size:27 final size:26
Alignment explanation
Indices: 76454559--76454613 Score: 92
Period size: 27 Copynumber: 2.1 Consensus size: 26
76454549 GACCCCTAAT
*
76454559 TGGTAAAATGACTGTTTTTCCCTTATG
1 TGGTAAAATGACTGTTTTACCC-TATG
76454586 TGGTAAAATGACTGTTTTACCCTATG
1 TGGTAAAATGACTGTTTTACCCTATG
76454612 TG
1 TG
76454614 ATGTATATAT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
26 6 0.22
27 21 0.78
ACGTcount: A:0.24, C:0.15, G:0.20, T:0.42
Consensus pattern (26 bp):
TGGTAAAATGACTGTTTTACCCTATG
Found at i:76457313 original size:56 final size:57
Alignment explanation
Indices: 76457241--76457351 Score: 154
Period size: 57 Copynumber: 2.0 Consensus size: 57
76457231 TACCTGTATA
* *
76457241 TGGCCCACTAGGCCC-AATCTCTTTCATATGGCCTATTAAGCCC-AATCACATTTATG
1 TGGCCCACTAGGCCCAAATCACATTCATATGGCC-ATTAAGCCCAAATCACATTTATG
* * *
76457297 TGGCCCATTAGGCCCAAATCACATTCTTATGGCCATTAGGCCCAAATCACATTTA
1 TGGCCCACTAGGCCCAAATCACATTCATATGGCCATTAAGCCCAAATCACATTTA
76457352 CAGCCATGTT
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
56 22 0.46
57 26 0.54
ACGTcount: A:0.27, C:0.30, G:0.14, T:0.29
Consensus pattern (57 bp):
TGGCCCACTAGGCCCAAATCACATTCATATGGCCATTAAGCCCAAATCACATTTATG
Found at i:76457347 original size:28 final size:28
Alignment explanation
Indices: 76457239--76457349 Score: 118
Period size: 28 Copynumber: 3.9 Consensus size: 28
76457229 CATACCTGTA
* * * *
76457239 TATGGCCCACTAGGCCCAATCTCTTTCA
1 TATGGCCCATTAGGCCCAATCACATTCT
* *
76457267 TATGGCCTATTAAGCCCAATCACATT-T
1 TATGGCCCATTAGGCCCAATCACATTCT
*
76457294 ATGTGGCCCATTAGGCCCAAATCACATTCT
1 -TATGGCCCATTAGGCCC-AATCACATTCT
76457324 TATGG-CCATTAGGCCCAAATCACATT
1 TATGGCCCATTAGGCCC-AATCACATT
76457350 TACAGCCATG
Statistics
Matches: 70, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
28 56 0.80
29 13 0.19
30 1 0.01
ACGTcount: A:0.27, C:0.30, G:0.14, T:0.29
Consensus pattern (28 bp):
TATGGCCCATTAGGCCCAATCACATTCT
Found at i:76466208 original size:17 final size:17
Alignment explanation
Indices: 76466175--76466208 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
76466165 GAGATGTGGT
76466175 TGGTGGATGTGTGTATG
1 TGGTGGATGTGTGTATG
76466192 TGGTGAGATGTGT-TATG
1 TGGTG-GATGTGTGTATG
76466209 GCTATGAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.15, C:0.00, G:0.44, T:0.41
Consensus pattern (17 bp):
TGGTGGATGTGTGTATG
Found at i:76468123 original size:40 final size:40
Alignment explanation
Indices: 76468040--76468247 Score: 175
Period size: 40 Copynumber: 5.2 Consensus size: 40
76468030 CGGGATTTAA
* * * * * *
76468040 CCGGATATAGCGACTCGCTCGATTGTCTTCGGGACCTAGC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
* ** * * *
76468080 CCGGTTATAGTGATTCGCACGATTGCCTTCGGGTCTTAAC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
76468120 CCGGATTTGGTAACTTGCACAAATGCCTTCAGGTCTTAGC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
*
76468160 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
*** * * *
76468200 CCGGATATAATTACTAGCA-TAATTGCCTTCGGGACTTAGC
1 CCGGATATAGCAACTCGCACGAA-TGCCTTCGGGTCTTAGC
76468240 CCGGATAT
1 CCGGATAT
76468248 CATTCCAATG
Statistics
Matches: 137, Mismatches: 30, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
39 2 0.01
40 135 0.99
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:76468178 original size:80 final size:80
Alignment explanation
Indices: 76468094--76468247 Score: 209
Period size: 80 Copynumber: 1.9 Consensus size: 80
76468084 TTATAGTGAT
* * ** * *
76468094 TCGCACGATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAAATGCCTTCAGGTCTTAG
1 TCGCACGAATGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAATGCCTTCAGGACTTAG
76468159 CCCGGATATAACAAC
66 CCCGGATATAACAAC
* * * * *
76468174 TCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAATTACTAGCATAATTGCCTTCGGGACTTAG
1 TCGCACGAATGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAATGCCTTCAGGACTTAG
76468239 CCCGGATAT
66 CCCGGATAT
76468248 CATTCCAATG
Statistics
Matches: 63, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
80 63 1.00
ACGTcount: A:0.23, C:0.27, G:0.22, T:0.28
Consensus pattern (80 bp):
TCGCACGAATGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAATGCCTTCAGGACTTAG
CCCGGATATAACAAC
Found at i:76471098 original size:51 final size:49
Alignment explanation
Indices: 76471030--76471160 Score: 156
Period size: 49 Copynumber: 2.6 Consensus size: 49
76471020 TGTGAGGTCG
*
76471030 CATGTGTAGTACTAAGTGCAAGCTACTATGCGTACCCGAAAACTG-TGATCA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTA-CC--AAACTGTTGATCA
* * * * * * *
76471081 CGTGTGTAGAACTAAGTGCAGGCTACTACGTGTACCAGACTGTTGGTCG
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAAACTGTTGATCA
76471130 CATGTGTAGTACTAAGTGCAGGCTACTATGC
1 CATGTGTAGTACTAAGTGCAGGCTACTATGC
76471161 ATACTAGATA
Statistics
Matches: 67, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
48 5 0.07
49 31 0.46
50 2 0.03
51 29 0.43
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.27
Consensus pattern (49 bp):
CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAAACTGTTGATCA
Found at i:76471151 original size:49 final size:50
Alignment explanation
Indices: 76471025--76471157 Score: 162
Period size: 51 Copynumber: 2.7 Consensus size: 50
76471015 TCTATTGTGA
* *
76471025 GGTCGCATGTGTAGTACTAAGTGCAAGCTACTATGCGTACCCGAAAACTGT
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCC-AAAACTGT
* * * * * *
76471076 GATCACGTGTGTAGAACTAAGTGCAGGCTACTACGTGTA-CC-AGACTGTT
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCAAAACTG-T
76471125 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
76471158 TGCATACTAG
Statistics
Matches: 69, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
48 5 0.07
49 30 0.43
50 2 0.03
51 32 0.46
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.26
Consensus pattern (50 bp):
GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCAAAACTGT
Found at i:76479925 original size:46 final size:46
Alignment explanation
Indices: 76479872--76480046 Score: 228
Period size: 46 Copynumber: 3.8 Consensus size: 46
76479862 TATTTGGGCA
76479872 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * * * *
76479918 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT-TATGGATGCGA-GCG
*
76479964 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * *
76480010 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
76480047 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
45 3 0.03
46 103 0.94
47 3 0.03
ACGTcount: A:0.19, C:0.22, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:76480025 original size:92 final size:92
Alignment explanation
Indices: 76479868--76480039 Score: 317
Period size: 92 Copynumber: 1.9 Consensus size: 92
76479858 GGGATATTTG
* *
76479868 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
76479933 TTGAGTCCGAGTTCGTGGATGTAACTA
66 TTGAGTCCGAGTTCGTGGATGTAACTA
*
76479960 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
76480025 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
76480040 CTTATGGGCG
Statistics
Matches: 77, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
92 77 1.00
ACGTcount: A:0.20, C:0.22, G:0.31, T:0.27
Consensus pattern (92 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGGATGTAACTA
Found at i:76481659 original size:43 final size:43
Alignment explanation
Indices: 76481609--76481779 Score: 141
Period size: 43 Copynumber: 4.0 Consensus size: 43
76481599 GTTACCGAGA
*
76481609 TGTGATTACATGTAAGACCATGTCTGGGACATTAGCATTGTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
* * * * * * *
76481652 TGTGATTACGTGTAATACCACGTCTAGGACATTGGCGTCGTTAA
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTG-TAT
* * * * * **
76481696 T-CGATTTCGTGTAAGGCCATGTCTGGGACAGTGGCA-TCAAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
* * *
76481737 ATGTGATAACATGTAAGACCATATCTGGGATA-TGGCATTGTAT
1 -TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
76481780 GAGCTATAAG
Statistics
Matches: 95, Mismatches: 29, Indels: 8
0.72 0.22 0.06
Matches are distributed among these distances:
41 1 0.01
42 6 0.06
43 85 0.89
44 3 0.03
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
Found at i:76484431 original size:46 final size:45
Alignment explanation
Indices: 76484355--76484460 Score: 126
Period size: 46 Copynumber: 2.3 Consensus size: 45
76484345 TAGTGTAGGA
76484355 CATGTCTGGGACATGCATCGGCCTCAAGATGTAATCCAGTGCAAGA-
1 CATGTCTGGGACATGCATCGGCCTCAAGATGT-AT-CAGTGCAAGAC
* * * * *
76484401 TATGTCTGGGACATGTATCGG-CTACGAGATGTGTCAGTGTAAGAC
1 CATGTCTGGGACATGCATCGGCCT-CAAGATGTATCAGTGCAAGAC
76484446 CATGTCTGGGACATG
1 CATGTCTGGGACATG
76484461 GCACCGGCAT
Statistics
Matches: 52, Mismatches: 6, Indels: 5
0.83 0.10 0.08
Matches are distributed among these distances:
44 9 0.17
45 17 0.33
46 26 0.50
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.25
Consensus pattern (45 bp):
CATGTCTGGGACATGCATCGGCCTCAAGATGTATCAGTGCAAGAC
Found at i:76491562 original size:24 final size:24
Alignment explanation
Indices: 76491522--76491583 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 24
76491512 GATTATGTAG
76491522 AAAGAATAAAGAAATGAA-AAAAAA
1 AAAGAA-AAAGAAATGAAGAAAAAA
* *
76491546 AAAGAAAGAGAATATGAAGAAAAAC
1 AAAGAAAAAGAA-ATGAAGAAAAAA
*
76491571 AAAGAAAAGGAAA
1 AAAGAAAAAGAAA
76491584 AAAAAAAGTG
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
23 5 0.16
24 12 0.38
25 15 0.47
ACGTcount: A:0.74, C:0.02, G:0.18, T:0.06
Consensus pattern (24 bp):
AAAGAAAAAGAAATGAAGAAAAAA
Found at i:76492781 original size:29 final size:29
Alignment explanation
Indices: 76492748--76492812 Score: 112
Period size: 29 Copynumber: 2.2 Consensus size: 29
76492738 GTGACGAGAT
*
76492748 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
76492777 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
*
76492806 CGGCACT
1 TGGCACT
76492813 GGGTGTGCGA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAAAATA
Found at i:76499456 original size:25 final size:24
Alignment explanation
Indices: 76499415--76499484 Score: 72
Period size: 25 Copynumber: 2.9 Consensus size: 24
76499405 GATTATGTAG
76499415 AAAGAATAAAGAAATGAAAAAAAAA
1 AAAGAA-AAAGAAATGAAAAAAAAA
* * *
76499440 AAAGAAAGAGAATATGAAGAAAAAC
1 AAAGAAAAAGAA-ATGAAAAAAAAA
*
76499465 AAAGAAAAGGAAA--AAAAAAA
1 AAAGAAAAAGAAATGAAAAAAA
76499485 GTGTTCATTC
Statistics
Matches: 38, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
22 6 0.16
24 6 0.16
25 26 0.68
ACGTcount: A:0.77, C:0.01, G:0.16, T:0.06
Consensus pattern (24 bp):
AAAGAAAAAGAAATGAAAAAAAAA
Found at i:76500675 original size:29 final size:29
Alignment explanation
Indices: 76500642--76500706 Score: 112
Period size: 29 Copynumber: 2.2 Consensus size: 29
76500632 GTGACGAGAT
*
76500642 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
76500671 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
*
76500700 CGGCACT
1 TGGCACT
76500707 GGGTGTGCGA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAAAATA
Found at i:76509666 original size:15 final size:15
Alignment explanation
Indices: 76509646--76509675 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
76509636 ATCATAAGAG
76509646 TTTGAAGTATTTGAT
1 TTTGAAGTATTTGAT
76509661 TTTGAAGTATTTGAT
1 TTTGAAGTATTTGAT
76509676 GATTCAGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.20, T:0.53
Consensus pattern (15 bp):
TTTGAAGTATTTGAT
Found at i:76515242 original size:37 final size:37
Alignment explanation
Indices: 76515183--76515291 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
76515173 AGCTCAGATG
* *
76515183 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
76515220 AAATCTCTACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
76515257 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
76515292 ATATATTTCC
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:76515562 original size:48 final size:48
Alignment explanation
Indices: 76515438--76516374 Score: 1196
Period size: 48 Copynumber: 18.8 Consensus size: 48
76515428 ACACATCGCC
* *
76515438 TACATATTTCACACTAGCTATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* * *
76515488 TATATATTTCACATT-GACCATTCAGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
*
76515536 TACATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTCATATATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--------A
* *
76515592 TATATATTTCACATTAGCCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
76515640 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC----------A
* * * * *
76515698 TATATATTTCACATTAACCATTCAGCTTTACCAGATACACATATCTCATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC----A
* *
76515750 TATATATTTCGCATTAGCCATTCGGCTTTACCACATATACATATCTCATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC----A
* * *
76515802 TATATATTTCACATTAACCATTCAGCTTTACCACATATACATATCTCATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC----A
* * *
76515854 TATATATTTCGCATTAGCCATTCGGCTTTACCACGTATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
76515902 TACATATTTCACATTAGCCATTCGGCTTTACCAGATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* * *
76515952 TATATATATTCACATTAACCATTCAGCTTTACCACATATACATATCTCATA
1 TACATAT-TTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
76516003 TATATATTTCGCATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
76516051 TACATATTTCACATTAGTCATTCGGCTTCACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
76516099 TACATATTTCACATTAGCCATTC-GCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
76516146 TACATATTTCACATTAGCCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
76516194 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
76516242 TACATATTTCACATTAGCCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
76516290 TACAT-TTTCACATTAGCCATTCGGCTTTACCACATACACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
76516337 TATATATTTCACATTAGCCATTCGGCTATACCACATAT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATAT
76516375 GTAACACCCC
Statistics
Matches: 808, Mismatches: 54, Indels: 52
0.88 0.06 0.06
Matches are distributed among these distances:
47 89 0.11
48 354 0.44
49 2 0.00
50 84 0.10
51 47 0.06
52 144 0.18
56 45 0.06
58 43 0.05
ACGTcount: A:0.32, C:0.25, G:0.06, T:0.37
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:76515636 original size:104 final size:98
Alignment explanation
Indices: 76515438--76516374 Score: 1239
Period size: 104 Copynumber: 9.4 Consensus size: 98
76515428 ACACATCGCC
* *
76515438 TACATATTTCACACTAGCTATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
* *
76515503 -GACCATTCAGCTTTACCACATATGCATATCTCA
66 AG-CCATTCGGCTTTACCACATATACATATCTCA
*
76515536 TACATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTCATATATATATATATATTT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC------ATATATATATTT
*
76515601 CACATTAGCCATTCGGCTTTACCACATATGCATATCTCA
60 CACATTAGCCATTCGGCTTTACCACATATACATATCTCA
76515640 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATATATATAT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--------ATATATATAT
* * * *
76515705 TTCACATTAACCATTCAGCTTTACCAGATACACATATCTCATATA
58 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTC----A
* *
76515750 TATATATTTCGCATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATATTTCACA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATATATATATTTCACA
* *
76515815 TTAACCATTCAGCTTTACCACATATACATATCTCATATA
64 TTAGCCATTCGGCTTTACCACATATACATATCTC----A
* * * *
76515854 TATATATTTCGCATTAGCCATTCGGCTTTACCACGTATACATATCTC--ATACATATTTCACATT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
*
76515917 AGCCATTCGGCTTTACCAGATATACATATCTCATA
66 AGCCATTCGGCTTTACCACATATACATATCTC--A
* * * *
76515952 TATATATATTCACATTAACCATTCAGCTTTACCACATATACATATCTCATATATATATTTCGCAT
1 TACATAT-TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACAT
76516017 TAGCCATTCGGCTTTACCACATATACATATCTCA
65 TAGCCATTCGGCTTTACCACATATACATATCTCA
* * *
76516051 TACATATTTCACATTAGTCATTCGGCTTCACCACATATACATATCTC--ATACATATTTCACATT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
*
76516114 AGCCATTC-GCTTTACCACATATGCATATCTCA
66 AGCCATTCGGCTTTACCACATATACATATCTCA
* *
76516146 TACATATTTCACATTAGCCATTCGGCTTTACCACATATGCATATCTC--ATACATATTTCACATT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
76516209 AGCCATTCGGCTTTACCACATATACATATCTCA
66 AGCCATTCGGCTTTACCACATATACATATCTCA
* *
76516242 TACATATTTCACATTAGCCATTCGGCTTTACCACATATGCATATCTC--ATACAT-TTTCACATT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
*
76516304 AGCCATTCGGCTTTACCACATACACATATCTCA
66 AGCCATTCGGCTTTACCACATATACATATCTCA
* *
76516337 TATATATTTCACATTAGCCATTCGGCTATACCACATAT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATAT
76516375 GTAACACCCC
Statistics
Matches: 781, Mismatches: 41, Indels: 37
0.91 0.05 0.04
Matches are distributed among these distances:
95 168 0.22
96 98 0.13
98 90 0.12
99 43 0.06
100 44 0.06
101 45 0.06
104 195 0.25
105 1 0.00
106 51 0.07
110 46 0.06
ACGTcount: A:0.32, C:0.25, G:0.06, T:0.37
Consensus pattern (98 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
AGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:76516204 original size:143 final size:146
Alignment explanation
Indices: 76515438--76516374 Score: 1215
Period size: 143 Copynumber: 6.3 Consensus size: 146
76515428 ACACATCGCC
* * *
76515438 TACATATTTCACACTAGCTATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA-ATACATATTTCACATT
* * *
76515503 GACCATTCAGCTTTACCACATATGCATATCTC-ATACATATTTCACATTAGCCATTCAGCTTTAC
65 AACCATTCAGCTTTACCACATATACATATCTCAATACATATTTCACATTAGCCATTCGGCTTTAC
76515567 CACATATACATATCTCATATATATA
130 CACATATACATATCTC--------A
* *
76515592 TATATATTTCACATTAGCCATTCGGCTTTACCACATATGCATATCTC-ATACATATTTCACATTA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAATACATATTTCACATTA
* * * *
76515656 GCCATTCGGCTTTACCACATATACATATCTCATATATATATATATATATTTCACATTAACCATTC
66 ACCATTCAGCTTTACCACATATACATATCTC--------A-ATACATATTTCACATTAGCCATTC
* * *
76515721 AGCTTTACCAGATACACATATCTCATATA
122 GGCTTTACCACATATACATATCTC----A
* * *
76515750 TATATATTTCGCATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATATTTCACA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A-ATACATATTTCACA
* *
76515815 TTAACCATTCAGCTTTACCACATATACATATCTCATATATATATATTTCGCATTAGCCATTCGGC
63 TTAACCATTCAGCTTTACCACATATACATATCTC--A-ATACATATTTCACATTAGCCATTCGGC
*
76515880 TTTACCACGTATACATATCTCA
125 TTTACCACATATACATATCTCA
* *
76515902 TACATATTTCACATTAGCCATTCGGCTTTACCAGATATACATATCTCATATATATATATTCACAT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA-ATACATAT-TTCACAT
* *
76515967 TAACCATTCAGCTTTACCACATATACATATCTCATATATATATTTCGCATTAGCCATTCGGCTTT
64 TAACCATTCAGCTTTACCACATATACATATCTCA-ATACATATTTCACATTAGCCATTCGGCTTT
76516032 ACCACATATACATATCTCA
128 ACCACATATACATATCTCA
* *
76516051 TACATATTTCACATTAGTCATTCGGCTTCACCACATATACATATCTC-ATACATATTTCACATTA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAATACATATTTCACATTA
* *
76516115 GCCATTC-GCTTTACCACATATGCATATCTC-ATACATATTTCACATTAGCCATTCGGCTTTACC
66 ACCATTCAGCTTTACCACATATACATATCTCAATACATATTTCACATTAGCCATTCGGCTTTACC
*
76516178 ACATATGCATATCTCA
131 ACATATACATATCTCA
76516194 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC-ATACATATTTCACATTA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAATACATATTTCACATTA
* * *
76516258 GCCATTCGGCTTTACCACATATGCATATCTC-ATACAT-TTTCACATTAGCCATTCGGCTTTACC
66 ACCATTCAGCTTTACCACATATACATATCTCAATACATATTTCACATTAGCCATTCGGCTTTACC
*
76516321 ACATACACATATCTCA
131 ACATATACATATCTCA
* *
76516337 TATATATTTCACATTAGCCATTCGGCTATACCACATAT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATAT
76516375 GTAACACCCC
Statistics
Matches: 724, Mismatches: 43, Indels: 43
0.89 0.05 0.05
Matches are distributed among these distances:
143 191 0.26
144 29 0.04
145 22 0.03
146 15 0.02
147 7 0.01
149 94 0.13
150 10 0.01
151 40 0.06
152 88 0.12
154 43 0.06
156 46 0.06
158 50 0.07
162 89 0.12
ACGTcount: A:0.32, C:0.25, G:0.06, T:0.37
Consensus pattern (146 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAATACATATTTCACATTA
ACCATTCAGCTTTACCACATATACATATCTCAATACATATTTCACATTAGCCATTCGGCTTTACC
ACATATACATATCTCA
Found at i:76516375 original size:95 final size:96
Alignment explanation
Indices: 76515701--76516374 Score: 956
Period size: 95 Copynumber: 6.9 Consensus size: 96
76515691 ATATATATAT
* * * * *
76515701 ATATTTCACATTAACCATTCAGCTTTACCAGATACACATATCTCATATATATATATTTCGCATTA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC----ATATATATTTCACATTA
*
76515766 GCCATTCGGCTTTACCACATATACATATCTCATATATAT
62 GCCATTCGGCTTTACCACATATACATATCTC----ATAC
* * *
76515805 ATATTTCACATTAACCATTCAGCTTTACCACATATACATATCTCATATATATATATTTCGCATTA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC----ATATATATTTCACATTA
*
76515870 GCCATTCGGCTTTACCACGTATACATATCTCATAC
62 GCCATTCGGCTTTACCACATATACATATCTCATAC
* *
76515905 ATATTTCACATTAGCCATTCGGCTTTACCAGATATACATATCTCATATATATATATTCACATTAA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATATATAT-TTCACATTAG
* *
76515970 CCATTCAGCTTTACCACATATACATATCTCATATAT
63 CCATTCGGCTTTACCACATATACATATCTC--ATAC
* * *
76516006 ATATTTCGCATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGTCA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCA
*
76516071 TTCGGCTTCACCACATATACATATCTCATAC
66 TTCGGCTTTACCACATATACATATCTCATAC
* *
76516102 ATATTTCACATTAGCCATTC-GCTTTACCACATATGCATATCTCATACATATTTCACATTAGCCA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCA
*
76516166 TTCGGCTTTACCACATATGCATATCTCATAC
66 TTCGGCTTTACCACATATACATATCTCATAC
*
76516197 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCA
*
76516262 TTCGGCTTTACCACATATGCATATCTCATAC
66 TTCGGCTTTACCACATATACATATCTCATAC
*
76516293 AT-TTTCACATTAGCCATTCGGCTTTACCACATACACATATCTCATATATATTTCACATTAGCCA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCA
*
76516357 TTCGGCTATACCACATAT
66 TTCGGCTTTACCACATAT
76516375 GTAACACCCC
Statistics
Matches: 537, Mismatches: 29, Indels: 17
0.92 0.05 0.03
Matches are distributed among these distances:
95 168 0.31
96 98 0.18
98 46 0.09
99 43 0.08
100 44 0.08
101 45 0.08
104 93 0.17
ACGTcount: A:0.32, C:0.26, G:0.07, T:0.36
Consensus pattern (96 bp):
ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCA
TTCGGCTTTACCACATATACATATCTCATAC
Found at i:76517891 original size:29 final size:29
Alignment explanation
Indices: 76517857--76517987 Score: 95
Period size: 29 Copynumber: 4.6 Consensus size: 29
76517847 TACTCGATTT
* *
76517857 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATGCCATTCAAGCC
** * * *
76517886 CGCACACACAGTGCCATGCCCTTCGAGCT
1 CGCACACTTAGTGCCATGCCATTCAAGCC
** * *
76517915 CGCACACTTAGTGCCAT-ATATTCCAGCA
1 CGCACACTTAGTGCCATGCCATTCAAGCC
* ** * *
76517943 TGCACACTTAGTGCCAT-ATATTTCCAGCA
1 CGCACACTTAGTGCCATGCCA-TTCAAGCC
76517972 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
76517988 ATCTCGTCAC
Statistics
Matches: 85, Mismatches: 16, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
28 25 0.29
29 60 0.71
ACGTcount: A:0.25, C:0.34, G:0.18, T:0.24
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCCATTCAAGCC
Found at i:76517951 original size:28 final size:29
Alignment explanation
Indices: 76517915--76517987 Score: 130
Period size: 29 Copynumber: 2.6 Consensus size: 29
76517905 CCTTCGAGCT
76517915 CGCACACTTAGTGCCATATA-TTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
76517943 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
76517972 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
76517988 ATCTCGTCAC
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
28 19 0.45
29 23 0.55
ACGTcount: A:0.27, C:0.32, G:0.15, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:76526476 original size:46 final size:46
Alignment explanation
Indices: 76526423--76526598 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
76526413 GGATTTGGCA
76526423 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
76526469 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
76526514 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
76526562 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
76526599 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 64 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:76526578 original size:93 final size:93
Alignment explanation
Indices: 76526419--76526590 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
76526409 ACTAGGATTT
* *
76526419 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
76526484 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
76526512 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
76526577 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
76526591 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:76529546 original size:15 final size:15
Alignment explanation
Indices: 76529507--76529585 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
76529497 GTATCTTGGG
*
76529507 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
76529522 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
76529537 TTTCTTTATTC-GGG
1 TTTCTTTATTCTGGA
*
76529551 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
76529566 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
76529580 TTTCTT
1 TTTCTT
76529586 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
13 2 0.04
14 17 0.32
15 32 0.60
16 2 0.04
ACGTcount: A:0.10, C:0.18, G:0.14, T:0.58
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:76529570 original size:29 final size:29
Alignment explanation
Indices: 76529498--76529584 Score: 95
Period size: 29 Copynumber: 3.0 Consensus size: 29
76529488 CATAGTATCG
* * * *
76529498 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTC-GGATTTCTC
*
76529528 TAT-TCTGGATTTCTTTATTCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCGGATTTCTC
*
76529557 TATCTTGGATTTCTTTATTCGGTTTTCT
1 TATCTTGGATTTCTTTATTCGGATTTCT
76529585 TGTTATCTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 32 0.65
30 17 0.35
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.56
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTCGGATTTCTC
Found at i:76531995 original size:46 final size:46
Alignment explanation
Indices: 76531945--76532120 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
76531935 ATGGTTGGCA
76531945 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
76531991 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
76532036 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
76532084 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
76532121 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 64 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:76532100 original size:93 final size:93
Alignment explanation
Indices: 76531941--76532112 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
76531931 TAGGATGGTT
* *
76531941 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
76532006 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
76532034 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
76532099 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
76532113 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:76535072 original size:15 final size:15
Alignment explanation
Indices: 76535033--76535111 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
76535023 GTATCTTGGG
*
76535033 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
76535048 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
76535063 TTTCTTTATTC-GGG
1 TTTCTTTATTCTGGA
*
76535077 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
76535092 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
76535106 TTTCTT
1 TTTCTT
76535112 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
13 2 0.04
14 17 0.32
15 32 0.60
16 2 0.04
ACGTcount: A:0.10, C:0.18, G:0.14, T:0.58
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:76535096 original size:29 final size:29
Alignment explanation
Indices: 76535024--76535110 Score: 95
Period size: 29 Copynumber: 3.0 Consensus size: 29
76535014 CATAGTATCG
* * * *
76535024 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTC-GGATTTCTC
*
76535054 TAT-TCTGGATTTCTTTATTCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCGGATTTCTC
*
76535083 TATCTTGGATTTCTTTATTCGGTTTTCT
1 TATCTTGGATTTCTTTATTCGGATTTCT
76535111 TGTTATCTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 32 0.65
30 17 0.35
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.56
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTCGGATTTCTC
Found at i:76537642 original size:93 final size:93
Alignment explanation
Indices: 76537483--76537653 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
76537473 GGATGGTTGA
* * *
76537483 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTGTGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAATCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
76537548 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* *
76537576 GCATCCGAGCTCGTTGAGTTGAATCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAATCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
76537641 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
76537654 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAATCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:76537658 original size:46 final size:45
Alignment explanation
Indices: 76537487--76537661 Score: 201
Period size: 46 Copynumber: 3.8 Consensus size: 45
76537477 GGTTGAGCAT
*
76537487 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTGTGGATGCGAATG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*** * *
76537532 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCAT-
1 -CCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAATG
* *
76537580 CCGAGCTCGTTGAGTTGAATCCGAGTTCACTTATGGATGCGAATG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*
76537625 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 -CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
76537662 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
45 1 0.01
46 67 0.62
47 29 0.27
48 1 0.01
49 4 0.04
50 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.29
Consensus pattern (45 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:76539648 original size:13 final size:13
Alignment explanation
Indices: 76539630--76539656 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
76539620 AAGAACTTAG
76539630 GGAAAATTTTCTT
1 GGAAAATTTTCTT
76539643 GGAAAATTTTCTT
1 GGAAAATTTTCTT
76539656 G
1 G
76539657 AAACAAGGCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.07, G:0.19, T:0.44
Consensus pattern (13 bp):
GGAAAATTTTCTT
Found at i:76540900 original size:20 final size:20
Alignment explanation
Indices: 76540877--76540949 Score: 94
Period size: 20 Copynumber: 3.6 Consensus size: 20
76540867 TAAACTGTAA
*
76540877 TTCATTCATATAACTAGTAG
1 TTCATCCATATAACTAGTAG
*
76540897 TTCATCCATATAAATAGTAG
1 TTCATCCATATAACTAGTAG
* *
76540917 TTCATCAATAATAAC-AGTAA
1 TTCATCCAT-ATAACTAGTAG
76540937 TTCATCCATATAA
1 TTCATCCATATAA
76540950 ACACATATCT
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
19 4 0.09
20 38 0.83
21 4 0.09
ACGTcount: A:0.41, C:0.16, G:0.07, T:0.36
Consensus pattern (20 bp):
TTCATCCATATAACTAGTAG
Found at i:76540952 original size:20 final size:20
Alignment explanation
Indices: 76540865--76540952 Score: 90
Period size: 20 Copynumber: 4.4 Consensus size: 20
76540855 TTTCTACTCG
* *
76540865 TATAAACTGTAATTCATTCA
1 TATAAACAGTAATTCATCCA
*
76540885 TAT-AACTAGTAGTTCATCCA
1 TATAAAC-AGTAATTCATCCA
* * *
76540905 TATAAATAGTAGTTCATCAA
1 TATAAACAGTAATTCATCCA
76540925 TA-ATAACAGTAATTCATCCA
1 TATA-AACAGTAATTCATCCA
76540945 TATAAACA
1 TATAAACA
76540953 CATATCTTAT
Statistics
Matches: 56, Mismatches: 8, Indels: 8
0.78 0.11 0.11
Matches are distributed among these distances:
19 4 0.07
20 49 0.88
21 3 0.05
ACGTcount: A:0.43, C:0.16, G:0.07, T:0.34
Consensus pattern (20 bp):
TATAAACAGTAATTCATCCA
Found at i:76541157 original size:23 final size:23
Alignment explanation
Indices: 76541096--76541213 Score: 78
Period size: 23 Copynumber: 5.0 Consensus size: 23
76541086 AAGCCATGAT
*
76541096 CGGTAAGCTCTTCTTGAGCTAATGAA
1 CGGTAAGCTC-TATTGAGCTAA--AA
* *
76541122 CAGTAAGCCCTATTGAGCTAAAA
1 CGGTAAGCTCTATTGAGCTAAAA
* *
76541145 TGGTAAGCTCTATCGAGCT-AAA
1 CGGTAAGCTCTATTGAGCTAAAA
** * *
76541167 CAATAAGCTC-ATACGAGCTGAAA
1 CGGTAAGCTCTAT-TGAGCTAAAA
* *
76541190 CGGTAAGCTCCAATGAGCTGAAAA
1 CGGTAAGCTCTATTGAGCT-AAAA
76541214 TAGTAAATTC
Statistics
Matches: 73, Mismatches: 15, Indels: 10
0.74 0.15 0.10
Matches are distributed among these distances:
21 2 0.03
22 16 0.22
23 33 0.45
24 4 0.05
25 10 0.14
26 8 0.11
ACGTcount: A:0.36, C:0.20, G:0.21, T:0.23
Consensus pattern (23 bp):
CGGTAAGCTCTATTGAGCTAAAA
Found at i:76546799 original size:15 final size:15
Alignment explanation
Indices: 76546745--76546807 Score: 65
Period size: 15 Copynumber: 4.2 Consensus size: 15
76546735 GAAAACTGAA
76546745 AAAGAAATCCA-AGAT
1 AAAGAAATCCAGA-AT
** *
76546760 ATGGAAACCCAGAAT
1 AAAGAAATCCAGAAT
76546775 AAAGAAATCCAGAAT
1 AAAGAAATCCAGAAT
* *
76546790 AAAGAGATCCAGGAT
1 AAAGAAATCCAGAAT
76546805 AAA
1 AAA
76546808 ATAACCCAAG
Statistics
Matches: 39, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
15 38 0.97
16 1 0.03
ACGTcount: A:0.56, C:0.14, G:0.17, T:0.13
Consensus pattern (15 bp):
AAAGAAATCCAGAAT
Found at i:76549909 original size:93 final size:92
Alignment explanation
Indices: 76549751--76549920 Score: 252
Period size: 93 Copynumber: 1.8 Consensus size: 92
76549741 CGCCCTAAGT
* * * * *
76549751 GAACTCGGACTCAACTCAACGAGCTCGGCGTTGGTATCCATAATTGAACTCGGACTCAACTCAAC
1 GAACTCAGACTCAACTCAACGAGCTCGACATTGGCATCCATAAGTGAACTCGGACTCAACTCAAC
76549816 GAGTTCGGATGCCTAGTTACATCTCAC
66 GAGTTCGGATGCCTAGTTACATCTCAC
*
76549843 GAACTCAGACTCAACTCAACGAGTTCAGACAATT-GCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCAGACTCAACTCAACGAGCTC-GAC-ATTGGCATCCATAAGTGAACTCGGACTCAACTCA
*
76549907 ACGAGTTTGGATGC
64 ACGAGTTCGGATGC
76549921 TCGACCATCC
Statistics
Matches: 69, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
92 24 0.35
93 43 0.62
94 2 0.03
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (92 bp):
GAACTCAGACTCAACTCAACGAGCTCGACATTGGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCAC
Found at i:76549936 original size:46 final size:46
Alignment explanation
Indices: 76549744--76549936 Score: 146
Period size: 46 Copynumber: 4.2 Consensus size: 46
76549734 TGTAACCCGC
* * * **
76549744 CCTAAGTGAACTCGGACTCAACTCAACGAGCTCGG-CG-TTGGTAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTAGACAT
*
76549788 CCATAATTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG-CTAG--ACAT
* * * * *** *
76549838 -CTCA-CGAACTCAGACTCAACTCAACGAGTTCAGACAATTG-CAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTAGACAT
* *
76549881 CCATAAGTGAACTCGGACTCAACTCAACGAGTTTGGATGCTCGACCAT
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTAGA-CAT
76549929 CCT-AGTGA
1 CCTAAGTGA
76549937 CATGTCACTT
Statistics
Matches: 115, Mismatches: 23, Indels: 20
0.73 0.15 0.13
Matches are distributed among these distances:
43 3 0.03
44 3 0.03
45 33 0.29
46 36 0.31
47 28 0.24
48 9 0.08
49 1 0.01
50 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTAGACAT
Found at i:76557094 original size:35 final size:36
Alignment explanation
Indices: 76557055--76557124 Score: 106
Period size: 35 Copynumber: 2.0 Consensus size: 36
76557045 CATTATAATC
*
76557055 ACTATAACATGGTATGAA-AACATACCCACATATTT
1 ACTATAACATGGCATGAATAACATACCCACATATTT
* *
76557090 ACTATCACATGGCATGAATAACATACCCATATATT
1 ACTATAACATGGCATGAATAACATACCCACATATT
76557125 CTCTTTCACA
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
35 16 0.52
36 15 0.48
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (36 bp):
ACTATAACATGGCATGAATAACATACCCACATATTT
Found at i:76563958 original size:42 final size:42
Alignment explanation
Indices: 76563911--76563999 Score: 108
Period size: 42 Copynumber: 2.1 Consensus size: 42
76563901 CACGGCCAAA
*
76563911 ACACATGCCCATGGGGCAAGC-CGTGTGTCACACATTGCCTAG
1 ACACATGCCCATGGGGCAA-CACGTGTGTCACACATGGCCTAG
* * * * *
76563953 ACACATGCCCGTGTGTCTACACGTTTGTCACACATGGCCTAG
1 ACACATGCCCATGGGGCAACACGTGTGTCACACATGGCCTAG
76563995 ACACA
1 ACACA
76564000 CGCCTATGTG
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
41 1 0.03
42 39 0.98
ACGTcount: A:0.25, C:0.31, G:0.22, T:0.21
Consensus pattern (42 bp):
ACACATGCCCATGGGGCAACACGTGTGTCACACATGGCCTAG
Found at i:76564929 original size:42 final size:42
Alignment explanation
Indices: 76564812--76564975 Score: 179
Period size: 42 Copynumber: 3.9 Consensus size: 42
76564802 TACCATACCA
* * * *
76564812 ATGCCATATCCAAGATATGGTCTTACATTGGA-TCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACA-CGAAGTCTCATATCG
* * * * *
76564854 ATGCTAATAGCTCAGCTATGGTCTTACAAGAAGTCTCATATCG
1 ATGC-CATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
* *
76564897 ATGCCATATCCCAGATATGGTCTTACACGAAGTCCCATATTG
1 ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
*
76564939 ATGCGATATCCCAGATATGGTCTTACAC-ATAGTCTCA
1 ATGCCATATCCCAGATATGGTCTTACACGA-AGTCTCA
76564976 GTAACTCTAA
Statistics
Matches: 102, Mismatches: 17, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
41 1 0.01
42 70 0.69
43 31 0.30
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
Found at i:76567188 original size:68 final size:70
Alignment explanation
Indices: 76567116--76567313 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
76567106 ACACCCTGTA
* * * *
76567116 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
76567178 ATAAAT
65 ATAAAT
*
76567184 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
76567249 ATAAAT
65 ATAAAT
*
76567255 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
76567314 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:76567227 original size:41 final size:41
Alignment explanation
Indices: 76567182--76567299 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
76567172 TGAAAGATAA
76567182 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
76567223 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
76567253 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
76567294 ATGTAG
1 ATGTAG
76567300 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:76567239 original size:71 final size:71
Alignment explanation
Indices: 76567150--76567313 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
76567140 GAGATGTATC
76567150 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
76567215 AGGACA
66 AGGACA
76567221 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
76567286 AGGACA
66 AGGACA
76567292 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
76567314 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:76569245 original size:29 final size:29
Alignment explanation
Indices: 76569203--76569262 Score: 102
Period size: 29 Copynumber: 2.1 Consensus size: 29
76569193 CTTACTTAAC
*
76569203 TTAGCAAGCAACTACTTATCCCACAGAAT
1 TTAGCAAGCAACTACTTATCCCACAAAAT
*
76569232 TTAGCAAGCAACTACTTGTCCCACAAAAT
1 TTAGCAAGCAACTACTTATCCCACAAAAT
76569261 TT
1 TT
76569263 GTAAAACAAC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.37, C:0.27, G:0.10, T:0.27
Consensus pattern (29 bp):
TTAGCAAGCAACTACTTATCCCACAAAAT
Found at i:76569272 original size:29 final size:29
Alignment explanation
Indices: 76569211--76569272 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 29
76569201 ACTTAGCAAG
* * *
76569211 CAACTACTTATCCCACAGAATTTAGCAAG
1 CAACTACTTATCCCACAAAATTTAGAAAA
*
76569240 CAACTACTTGTCCCACAAAATTT-GTAAAA
1 CAACTACTTATCCCACAAAATTTAG-AAAA
76569269 CAAC
1 CAAC
76569273 CCTTACATGC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 1 0.04
29 27 0.96
ACGTcount: A:0.40, C:0.27, G:0.08, T:0.24
Consensus pattern (29 bp):
CAACTACTTATCCCACAAAATTTAGAAAA
Found at i:76572379 original size:46 final size:46
Alignment explanation
Indices: 76572206--76572372 Score: 167
Period size: 46 Copynumber: 3.6 Consensus size: 46
76572196 ATGTAACCCG
* *
76572206 TCCATAAGTGAACTCGGACTCAACTCAATGAGCTCAGG-CGTTCACA
1 TCCATAAGTGAACTCGGACTCAACTCAATGAGCTC-GGACGCTCGCA
* * * * *
76572252 TCCATAAGTGAACTCGGACTGAACTCAATGACCTCGGATGCCTAG-T
1 TCCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGACG-CTCGCA
* *** * * *
76572298 TACATCTCTCGAACTCGGACTCAACTCGACGAGTTCGGACGCTCGCA
1 TCCATAAGT-GAACTCGGACTCAACTCAATGAGCTCGGACGCTCGCA
76572345 TCCATAAGTGAACTCGGACTCAACTCAA
1 TCCATAAGTGAACTCGGACTCAACTCAA
76572373 CTAGTTCAGA
Statistics
Matches: 93, Mismatches: 24, Indels: 8
0.74 0.19 0.06
Matches are distributed among these distances:
45 2 0.02
46 60 0.65
47 31 0.33
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
TCCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGACGCTCGCA
Found at i:76574469 original size:2 final size:2
Alignment explanation
Indices: 76574462--76574493 Score: 55
Period size: 2 Copynumber: 15.5 Consensus size: 2
76574452 ATAATATTAG
76574462 AT AT AT AT AT AT AT AT AT AT AT AT AT AGT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT A
76574494 AAAGAAGAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 27 0.93
3 2 0.07
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (2 bp):
AT
Found at i:76574535 original size:12 final size:11
Alignment explanation
Indices: 76574514--76574548 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
76574504 ATGACTAATG
*
76574514 ATATTAAATAT
1 ATATAAAATAT
76574525 ATATAATAATAT
1 ATATAA-AATAT
76574537 ATATAAAATAT
1 ATATAAAATAT
76574548 A
1 A
76574549 ATATTAAGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 11 0.50
12 11 0.50
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (11 bp):
ATATAAAATAT
Found at i:76574765 original size:13 final size:14
Alignment explanation
Indices: 76574747--76574777 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
76574737 ATGTACGAAT
76574747 ATATACATATA-TA
1 ATATACATATATTA
76574760 ATATACATATATTA
1 ATATACATATATTA
76574774 ATAT
1 ATAT
76574778 TAATAATGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.65
14 6 0.35
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (14 bp):
ATATACATATATTA
Found at i:76574876 original size:12 final size:12
Alignment explanation
Indices: 76574838--76574877 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
76574828 TTGAAATAAT
76574838 TAAT-ATATTAA
1 TAATAATATTAA
* *
76574849 TAAAAATACTAA
1 TAATAATATTAA
76574861 TAATAATATTAA
1 TAATAATATTAA
76574873 TAATA
1 TAATA
76574878 TGTAAAAAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
11 3 0.12
12 21 0.88
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.38
Consensus pattern (12 bp):
TAATAATATTAA
Found at i:76575367 original size:20 final size:20
Alignment explanation
Indices: 76575342--76575385 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
76575332 AGAAGGGGAA
76575342 GGAGAGAAAAGA-GGGAGCGG
1 GGAGAGAAAAGAGGGGAG-GG
*
76575362 GGAGAGAAGAGAGGGGAGGG
1 GGAGAGAAAAGAGGGGAGGG
76575382 GGAG
1 GGAG
76575386 CTCTGGCCAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 17 0.77
21 5 0.23
ACGTcount: A:0.36, C:0.02, G:0.61, T:0.00
Consensus pattern (20 bp):
GGAGAGAAAAGAGGGGAGGG
Found at i:76576981 original size:71 final size:72
Alignment explanation
Indices: 76576823--76576998 Score: 239
Period size: 71 Copynumber: 2.5 Consensus size: 72
76576813 GTTAACAAGA
* * * *
76576823 CTCAACTCACCTCTCGCAATATGAATTGACTTTTGAAAATAGAATTTGAAAATACCTTAGCGTGC
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAATAGAATTTGAAAATACCTCAACGTGC
76576888 CGCGAGG
66 CGCGAGG
* *
76576895 CTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAACATA-AA-TTGAAATTACCTCAACGTG
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA-ATAGAATTTGAAAATACCTCAACGTG
* **
76576958 TCTTGAGG
65 CCGCGAGG
*
76576966 CTCAACTCACCTCTCGCAATATGAGCTGATTTT
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTT
76576999 CTTGGAAAAC
Statistics
Matches: 92, Mismatches: 11, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
71 52 0.57
72 37 0.40
73 3 0.03
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.31
Consensus pattern (72 bp):
CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAATAGAATTTGAAAATACCTCAACGTGC
CGCGAGG
Found at i:76577132 original size:160 final size:160
Alignment explanation
Indices: 76576863--76577409 Score: 997
Period size: 160 Copynumber: 3.4 Consensus size: 160
76576853 TTTTGAAAAT
* * *
76576863 AGAATTTGAAAATACCTTAGCGTGCCGC-GAGGCTCAACTCACTTCTCGCAATATGAGTTGATTT
1 AGAAATTGAAAATACCTCAGCGTGCC-CTGAGGCTCAACTCACTTCTCGCAATACGAGTTGATTT
*
76576927 TTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGC
65 TTGAAACATACATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGC
76576992 TGATTTTCTTGGAAAACATGAATTAAAAAGC
130 TGATTTTCTTGGAAAACATGAATTAAAAAGC
76577023 AGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATACGAGTTGATTTT
1 AGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATACGAGTTGATTTT
*
76577088 TGAAACATACATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAACATGAGCT
66 TGAAACATACATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCT
76577153 GATTTTCTTGGAAAACATGAATTAAAAAGC
131 GATTTTCTTGGAAAACATGAATTAAAAAGC
76577183 AGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATACGAGTTGATTTT
1 AGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATACGAGTTGATTTT
76577248 TGAAACATACATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCT
66 TGAAACATACATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCT
*
76577313 GATTTTCTTGGAAAACATGAATTAAAAAGT
131 GATTTTCTTGGAAAACATGAATTAAAAAGC
* * *
76577343 AGAAATTGAAAATACCTCAGCGTACCCTGAGGCTCTACTCACTTCTCGCAATATGAGTTGATTTT
1 AGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATACGAGTTGATTTT
76577408 TG
66 TG
76577410 GAAAAAACAA
Statistics
Matches: 376, Mismatches: 10, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
159 1 0.00
160 375 1.00
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (160 bp):
AGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATACGAGTTGATTTT
TGAAACATACATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCT
GATTTTCTTGGAAAACATGAATTAAAAAGC
Found at i:76577143 original size:71 final size:71
Alignment explanation
Indices: 76577027--76577158 Score: 192
Period size: 71 Copynumber: 1.9 Consensus size: 71
76577017 AAAAGCAGAA
* * * *
76577027 ATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATACGAGTTGATTTTTGAA
1 ATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAACACGAGCTGATTTTTGAA
76577092 ACATAC
66 ACATAC
* * * *
76577098 ATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAACATGAGCTGATTTT
1 ATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAACACGAGCTGATTTT
76577159 CTTGGAAAAC
Statistics
Matches: 53, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
71 53 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.30
Consensus pattern (71 bp):
ATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAACACGAGCTGATTTTTGAA
ACATAC
Found at i:76577303 original size:71 final size:71
Alignment explanation
Indices: 76577187--76577318 Score: 201
Period size: 71 Copynumber: 1.9 Consensus size: 71
76577177 AAAAGCAGAA
* * *
76577187 ATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATACGAGTTGATTTTTGAA
1 ATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATACGAGCTGATTTTTGAA
76577252 ACATAC
66 ACATAC
* * * *
76577258 ATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
1 ATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATACGAGCTGATTTT
76577319 CTTGGAAAAC
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
71 54 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (71 bp):
ATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATACGAGCTGATTTTTGAA
ACATAC
Found at i:76587762 original size:66 final size:68
Alignment explanation
Indices: 76587686--76587872 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
76587676 TAGTACCACT
*
76587686 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
76587748 CACG
65 CACG
76587752 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
76587817 ATCACG
63 ATCACG
76587823 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
76587873 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:76587797 original size:71 final size:71
Alignment explanation
Indices: 76587709--76587872 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
76587699 CGATTTGTCT
76587709 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
76587774 CTTTCA
66 CTTTCA
76587780 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
76587845 CTTTCA
66 CTTTCA
76587851 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
76587873 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:76587910 original size:71 final size:70
Alignment explanation
Indices: 76587709--76587906 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
76587699 CGATTTGTCT
* * *
76587709 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
76587774 CTTTCA
65 CTTTCA
* * *
76587780 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
76587845 CTTTCA
65 CTTTCA
* *
76587851 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
76587907 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:76596807 original size:28 final size:28
Alignment explanation
Indices: 76596775--76596839 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
76596765 ATTTACTAGA
*
76596775 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
* * *
76596803 ATACCCCTATGTATGCTAAATGGCCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
76596831 ATACCCCTA
1 ATACCCCTA
76596840 GGGTTAATTT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.31, C:0.28, G:0.09, T:0.32
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:76596986 original size:28 final size:29
Alignment explanation
Indices: 76596945--76597007 Score: 94
Period size: 28 Copynumber: 2.2 Consensus size: 29
76596935 AGGAAGCGTC
*
76596945 CTGGTGGCTATGCCACAAATTATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTAT
76596973 CTGGTGGC-ACTGCCACAAAATATCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGTAT
76597002 CTGGTG
1 CTGGTG
76597008 ACTCTGTCAC
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
27 1 0.03
28 24 0.75
29 7 0.22
ACGTcount: A:0.22, C:0.22, G:0.24, T:0.32
Consensus pattern (29 bp):
CTGGTGGCTATGCCACAAAATATCTGTAT
Found at i:76597018 original size:29 final size:28
Alignment explanation
Indices: 76596955--76597018 Score: 83
Period size: 28 Copynumber: 2.2 Consensus size: 28
76596945 CTGGTGGCTA
* *
76596955 TGCCACAAATTATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
76596983 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
76597012 TGTCACA
1 TGCCACA
76597019 TTTTCTGTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
28 16 0.52
29 15 0.48
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:76603074 original size:40 final size:40
Alignment explanation
Indices: 76603015--76603236 Score: 349
Period size: 40 Copynumber: 5.6 Consensus size: 40
76603005 TATTCGAATG
76603015 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* *
76603055 ATATCCGGGCTAAGCCCCGAAGGCATTTGTGCTATTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
76603095 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
76603135 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* * *
76603175 ATATCCGGGCTAAGACCTGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGACT
*
76603215 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
76603237 TACTTGGGTT
Statistics
Matches: 167, Mismatches: 14, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
39 13 0.08
40 151 0.90
41 3 0.02
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
Found at i:76605744 original size:40 final size:40
Alignment explanation
Indices: 76605634--76605775 Score: 133
Period size: 40 Copynumber: 3.5 Consensus size: 40
76605624 GGATATAGCG
* * * *
76605634 ACTCGCTCAAAAGCCTTCGGGACATAG-CCCGGTTATAATA
1 ACTCGCACAAAAGCCTTCGGGA-ATTGACCCGGTTTTAGTA
* * * * * *
76605674 GCTCGCACAAATGCCTTCAGGACTTAACCCGGTTTTGGTA
1 ACTCGCACAAAAGCCTTCGGGAATTGACCCGGTTTTAGTA
* * *
76605714 ACTCGCACAAATGCCTTCGGGAATTGACCCGGATTTAGTC
1 ACTCGCACAAAAGCCTTCGGGAATTGACCCGGTTTTAGTA
*
76605754 ACTTAGCACAAAAGCCTTCGGG
1 AC-TCGCACAAAAGCCTTCGGG
76605776 CTTAGCCCGG
Statistics
Matches: 81, Mismatches: 19, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
39 1 0.01
40 63 0.78
41 17 0.21
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAAAGCCTTCGGGAATTGACCCGGTTTTAGTA
Found at i:76615361 original size:24 final size:24
Alignment explanation
Indices: 76615315--76615406 Score: 78
Period size: 25 Copynumber: 3.8 Consensus size: 24
76615305 GTATGCTCAT
* * *
76615315 ACGAGCTATAAATCAGTATGCTCTC
1 ACGAGCT-GAAATCGGTAAGCTCTC
* *
76615340 ATGAGCTGCAATCGGTAAGCTCAT-
1 ACGAGCTGAAATCGGTAAGCTC-TC
* *
76615364 ACGAGTTGAGAATCGATAAGCTCTC
1 ACGAGCTGA-AATCGGTAAGCTCTC
*
76615389 ACGAGCTGAAATTGGTAA
1 ACGAGCTGAAATCGGTAA
76615407 TCCCTAATGA
Statistics
Matches: 52, Mismatches: 12, Indels: 7
0.73 0.17 0.10
Matches are distributed among these distances:
24 25 0.48
25 27 0.52
ACGTcount: A:0.33, C:0.20, G:0.23, T:0.25
Consensus pattern (24 bp):
ACGAGCTGAAATCGGTAAGCTCTC
Found at i:76630466 original size:39 final size:39
Alignment explanation
Indices: 76630416--76630494 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
76630406 TGCATTATGG
*
76630416 ATTTAGCCCGGACGGGTAATCCGGTTAGGGTCTGAATTT
1 ATTTAGCCCGGACGGGTAATCCGATTAGGGTCTGAATTT
*
76630455 ATTTAGCCCGGATGGGTAATCCGATTAGGGTCTGAATTT
1 ATTTAGCCCGGACGGGTAATCCGATTAGGGTCTGAATTT
76630494 A
1 A
76630495 ACCTAGCTGG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.23, C:0.16, G:0.29, T:0.32
Consensus pattern (39 bp):
ATTTAGCCCGGACGGGTAATCCGATTAGGGTCTGAATTT
Found at i:76647174 original size:39 final size:39
Alignment explanation
Indices: 76647125--76647214 Score: 153
Period size: 39 Copynumber: 2.3 Consensus size: 39
76647115 TTTAAGCCCA
* * *
76647125 GATATATTTCCAGCACGTAGCCTGTGGACCTCAAGTCCG
1 GATATGTTTCCAGCACGTAGCCTGCGGACCCCAAGTCCG
76647164 GATATGTTTCCAGCACGTAGCCTGCGGACCCCAAGTCCG
1 GATATGTTTCCAGCACGTAGCCTGCGGACCCCAAGTCCG
76647203 GATATGTTTCCA
1 GATATGTTTCCA
76647215 AGTATCATGC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 48 1.00
ACGTcount: A:0.22, C:0.29, G:0.23, T:0.26
Consensus pattern (39 bp):
GATATGTTTCCAGCACGTAGCCTGCGGACCCCAAGTCCG
Found at i:76649800 original size:29 final size:27
Alignment explanation
Indices: 76649766--76649868 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
76649756 TACTCAATCA
*
76649766 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
76649795 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
76649824 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
76649853 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
76649869 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:76655175 original size:28 final size:29
Alignment explanation
Indices: 76655143--76655262 Score: 95
Period size: 29 Copynumber: 4.2 Consensus size: 29
76655133 GATTAAATAT
*
76655143 AAGGGATAGTTTCGACTATCGACTATG-A
1 AAGGGATAGTTTCGACTATCAACTATGAA
* * *
76655171 AAGGGATGGTGAT-GACCATCAACTATGAA
1 AAGGGATAGT-TTCGACTATCAACTATGAA
* ** *
76655200 AAGGGATGGTGACGA-TCATTGAA-TATGAA
1 AAGGGATAGTTTCGACT-A-TCAACTATGAA
* *
76655229 AAAGGATAGTTTCGACTATCAACTATCAA
1 AAGGGATAGTTTCGACTATCAACTATGAA
76655258 AAGGG
1 AAGGG
76655263 GTGGTGGTGG
Statistics
Matches: 70, Mismatches: 15, Indels: 13
0.71 0.15 0.13
Matches are distributed among these distances:
28 24 0.34
29 42 0.60
30 4 0.06
ACGTcount: A:0.38, C:0.12, G:0.26, T:0.24
Consensus pattern (29 bp):
AAGGGATAGTTTCGACTATCAACTATGAA
Found at i:76655307 original size:39 final size:39
Alignment explanation
Indices: 76655232--76655307 Score: 107
Period size: 39 Copynumber: 1.9 Consensus size: 39
76655222 ATATGAAAAA
*
76655232 GGATAGTTTCGACTATCAACTATCAAAAGGGGTGGTGGT
1 GGATAGTTTCGACTATCAACTATCAAAAGGGATGGTGGT
* * * *
76655271 GGATAGTTTTGACTATCGACTATGAAAAGTGATGGTG
1 GGATAGTTTCGACTATCAACTATCAAAAGGGATGGTG
76655308 ATGACCATCA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
39 32 1.00
ACGTcount: A:0.29, C:0.11, G:0.30, T:0.30
Consensus pattern (39 bp):
GGATAGTTTCGACTATCAACTATCAAAAGGGATGGTGGT
Found at i:76655431 original size:29 final size:29
Alignment explanation
Indices: 76655285--76655433 Score: 149
Period size: 29 Copynumber: 5.1 Consensus size: 29
76655275 AGTTTTGACT
* * *
76655285 ATCGACTATGAAAAGTGATGGTGATGACC
1 ATCGAATATGAAAAGGGATGGTGACGACC
* ** **
76655314 ATC-AACTATGAAAAGCGATGGTGATAATT
1 ATCGAA-TATGAAAAGGGATGGTGACGACC
*
76655343 ATC-AATTGATGAAAAGGGATGGTGACGACT
1 ATCGAA-T-ATGAAAAGGGATGGTGACGACC
*
76655373 ATCGAATATGAAAAAGGATGGTGACGACC
1 ATCGAATATGAAAAGGGATGGTGACGACC
* *
76655402 ATCGAATATGAAAAGGGATGGTTACAACC
1 ATCGAATATGAAAAGGGATGGTGACGACC
76655431 ATC
1 ATC
76655434 ATTTAGCACA
Statistics
Matches: 102, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
28 1 0.01
29 77 0.75
30 22 0.22
31 2 0.02
ACGTcount: A:0.39, C:0.13, G:0.26, T:0.23
Consensus pattern (29 bp):
ATCGAATATGAAAAGGGATGGTGACGACC
Found at i:76660387 original size:48 final size:48
Alignment explanation
Indices: 76660201--76660462 Score: 224
Period size: 48 Copynumber: 5.5 Consensus size: 48
76660191 AACACTGTCG
* * * * * *
76660201 ATGCCATGTCCTAGACATGATCTTATACGGGACCTCATATTGATGCCA
1 ATGCCATATCCCAGATATGGTCTTACACGGGATCTCATATTGATGCCA
* * * * ** *
76660249 ATGCCATATCCCAGGTATGGTATTACATGGTAAATC--A-TGTTGCCA
1 ATGCCATATCCCAGATATGGTCTTACACGGGATCTCATATTGATGCCA
* * * * *
76660294 ATGCCATATCCTAGAAATGGTCCTACATGGGATTTCATATTGATGCCA
1 ATGCCATATCCCAGATATGGTCTTACACGGGATCTCATATTGATGCCA
* * * **
76660342 ATTCCATATCCCAGATATGGTCTTACACGGGATCTCATCTCGATGCTT
1 ATGCCATATCCCAGATATGGTCTTACACGGGATCTCATATTGATGCCA
* * * ** * *
76660390 ATGTCATACCCCATATACAGTGTTACAAGGGATCTCATATTGATGCCA
1 ATGCCATATCCCAGATATGGTCTTACACGGGATCTCATATTGATGCCA
*
76660438 AAGCCATATCCCAGATATGGTCTTA
1 ATGCCATATCCCAGATATGGTCTTA
76660463 TACAGGATTT
Statistics
Matches: 161, Mismatches: 50, Indels: 6
0.74 0.23 0.03
Matches are distributed among these distances:
45 35 0.22
46 1 0.01
47 1 0.01
48 124 0.77
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (48 bp):
ATGCCATATCCCAGATATGGTCTTACACGGGATCTCATATTGATGCCA
Found at i:76663490 original size:13 final size:13
Alignment explanation
Indices: 76663482--76663525 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
76663472 AGACCAAATA
76663482 CACATACCATAAT
1 CACATACCATAAT
*
76663495 CACATA-TATACA-
1 CACATACCATA-AT
76663507 CACATACCATAAT
1 CACATACCATAAT
76663520 CACATA
1 CACATA
76663526 TATACTTCAT
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
12 10 0.38
13 16 0.62
ACGTcount: A:0.48, C:0.30, G:0.00, T:0.23
Consensus pattern (13 bp):
CACATACCATAAT
Found at i:76663512 original size:25 final size:25
Alignment explanation
Indices: 76663481--76663530 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
76663471 AAGACCAAAT
76663481 ACACATACCATAATCACATATATAC
1 ACACATACCATAATCACATATATAC
76663506 ACACATACCATAATCACATATATAC
1 ACACATACCATAATCACATATATAC
76663531 TTCATTTGCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.48, C:0.28, G:0.00, T:0.24
Consensus pattern (25 bp):
ACACATACCATAATCACATATATAC
Found at i:76667550 original size:47 final size:47
Alignment explanation
Indices: 76667482--76667699 Score: 357
Period size: 47 Copynumber: 4.7 Consensus size: 47
76667472 CCTGTATATA
* *
76667482 TATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTG
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
76667529 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
76667576 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
**
76667623 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTA
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
* * * *
76667670 TATATGTGGTAA-GCCAAATGGCTAATGTGA
1 TATGTGTGATAAGGCCGAATGGCCAATGTGA
76667700 GGCCGAATGG
Statistics
Matches: 163, Mismatches: 8, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
46 16 0.10
47 147 0.90
ACGTcount: A:0.31, C:0.12, G:0.31, T:0.27
Consensus pattern (47 bp):
TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
Found at i:76667708 original size:65 final size:65
Alignment explanation
Indices: 76667634--76667765 Score: 171
Period size: 65 Copynumber: 2.0 Consensus size: 65
76667624 ATGTGTGATA
* *
76667634 AGGCCGAATGGCCAATGTGATGAATGTG-AACATG-TATATATGTGGT-AAGCCAAATGGCTAAT
1 AGGCCGAATGGCCAATGCGA--AATGTGTAACA-GATAGATATGTGGTAAAGCCAAATGGCTAAT
76667696 GTG
63 GTG
* **
76667699 AGGCCGAATGGCTAATGCGAAATGTGTATGAGATAGATATGTGGTAAAGCCAAATGGCTAATGTG
1 AGGCCGAATGGCCAATGCGAAATGTGTAACAGATAGATATGTGGTAAAGCCAAATGGCTAATGTG
76667764 AG
1 AG
76667766 ATATGTATGA
Statistics
Matches: 59, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
63 7 0.12
64 13 0.22
65 39 0.66
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.25
Consensus pattern (65 bp):
AGGCCGAATGGCCAATGCGAAATGTGTAACAGATAGATATGTGGTAAAGCCAAATGGCTAATGTG
Found at i:76670601 original size:40 final size:40
Alignment explanation
Indices: 76670061--76670582 Score: 902
Period size: 40 Copynumber: 13.1 Consensus size: 40
76670051 AGTTGTATAG
* * * *
76670061 CCGGGCTAAGTCCCGAAGAGCATTTGTGCTAGTGATATAT
1 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
*
76670101 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATATAT
1 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
76670141 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
* *
76670181 CCGGACTAAATCCCGAAGAGCATTTGTGCTAGTGATATAT
1 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
*
76670221 CCGGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
*
76670261 CCGGACTAAATCCCGAAGAGCATTTGTGCTAGTGATGTAT
1 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
*
76670301 CCGGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
76670341 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
*
76670381 CCGGACTAAATCCCGAAGAGCATTTGTGCTAGTGATGTAT
1 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
76670421 CCGGACTAAATCCCG-AGAGCATTCGTGCTAGTGATGTAT
1 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
*
76670460 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATATAT
1 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
*
76670500 CCGGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
* *
76670540 CTGGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
76670580 CCG
1 CCG
76670583 AGCTGGGTCC
Statistics
Matches: 460, Mismatches: 21, Indels: 2
0.95 0.04 0.00
Matches are distributed among these distances:
39 38 0.08
40 422 0.92
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.26
Consensus pattern (40 bp):
CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
Found at i:76674121 original size:47 final size:47
Alignment explanation
Indices: 76674053--76674238 Score: 354
Period size: 47 Copynumber: 4.0 Consensus size: 47
76674043 CCTGTATATA
* *
76674053 TATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTG
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
76674100 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
76674147 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
76674194 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
76674239 TATATGTGGT
Statistics
Matches: 137, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
47 137 1.00
ACGTcount: A:0.30, C:0.12, G:0.32, T:0.26
Consensus pattern (47 bp):
TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
Found at i:76674245 original size:94 final size:94
Alignment explanation
Indices: 76674027--76674246 Score: 359
Period size: 94 Copynumber: 2.3 Consensus size: 94
76674017 TTAGGATTTT
* *
76674027 ATGTGATGAATGTGAACCTGTATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
1 ATGTGATGAATGTGAA-C---ATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
*
76674092 AACATGTGTATGTGTGATAAGGCCGAATGGCCA
62 AACATGCGTATGTGTGATAAGGCCGAATGGCCA
**
76674125 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
76674190 TGCGTATGTGTGATAAGGCCGAATGGCCA
66 TGCGTATGTGTGATAAGGCCGAATGGCCA
76674219 ATGTGATGAATGTGAACATGTATATGTG
1 ATGTGATGAATGTGAACATGTATATGTG
76674247 GTAAGAATGG
Statistics
Matches: 115, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
94 98 0.85
97 1 0.01
98 16 0.14
ACGTcount: A:0.30, C:0.11, G:0.30, T:0.28
Consensus pattern (94 bp):
ATGTGATGAATGTGAACATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
TGCGTATGTGTGATAAGGCCGAATGGCCA
Found at i:76680152 original size:29 final size:29
Alignment explanation
Indices: 76680120--76680197 Score: 84
Period size: 29 Copynumber: 2.7 Consensus size: 29
76680110 ATACCCTCCG
* *
76680120 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACCCAGTGCCATATATTTCC
* **
76680149 AGCTTGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACCCAGTGCCATATATTTCC
* **
76680178 AGCACGCACACTTAGTGCCA
1 AGCTCGCACACCCAGTGCCA
76680198 ATCTCGTCAC
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.23, C:0.33, G:0.17, T:0.27
Consensus pattern (29 bp):
AGCTCGCACACCCAGTGCCATATATTTCC
Found at i:76686445 original size:30 final size:29
Alignment explanation
Indices: 76686351--76686452 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
76686341 TATAGTGAAT
* * *
76686351 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
76686380 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
76686408 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
76686438 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
76686453 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:76692138 original size:59 final size:59
Alignment explanation
Indices: 76692045--76692162 Score: 209
Period size: 59 Copynumber: 2.0 Consensus size: 59
76692035 GAGGCCAAAT
* *
76692045 ACCGTGCTAGGCGAGTCATATAAGGGCCAGTGGATATGACTCCCTTCCTATGCCGCTCC
1 ACCGTGCTAGGCGAGTCATATAAGGGCCAATGGATATGACTCACTTCCTATGCCGCTCC
*
76692104 ACCGTGCTAGGTGAGTCATATAAGGGCCAATGGATATGACTCACTTCCTATGCCGCTCC
1 ACCGTGCTAGGCGAGTCATATAAGGGCCAATGGATATGACTCACTTCCTATGCCGCTCC
76692163 GTCTGATTGC
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
59 56 1.00
ACGTcount: A:0.22, C:0.29, G:0.25, T:0.25
Consensus pattern (59 bp):
ACCGTGCTAGGCGAGTCATATAAGGGCCAATGGATATGACTCACTTCCTATGCCGCTCC
Found at i:76705768 original size:40 final size:40
Alignment explanation
Indices: 76705634--76705772 Score: 122
Period size: 40 Copynumber: 3.5 Consensus size: 40
76705624 TCGCTCGAAA
* ** ** * *
76705634 GCCTTCGGGACATAGCCCGGTTATAATAGCTCGCACAAAT
1 GCCTTCGGGACTTAGCCCGAATATAGGAACTTGCACAAAT
* * *
76705674 GCCTTCGGGACTTAACCCGGATTTAGGAACTTGCACAAAT
1 GCCTTCGGGACTTAGCCCGAATATAGGAACTTGCACAAAT
* *
76705714 GCCTTC-GGATCTTAGTCCGAATAT-GGTCACTTAGCACAAA-
1 GCCTTCGGGA-CTTAGCCCGAATATAGG-AACTT-GCACAAAT
76705754 GCCTTCGGGACTTAGCCCG
1 GCCTTCGGGACTTAGCCCG
76705773 GACATCATTC
Statistics
Matches: 81, Mismatches: 14, Indels: 8
0.79 0.14 0.08
Matches are distributed among these distances:
39 5 0.06
40 66 0.81
41 10 0.12
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGAATATAGGAACTTGCACAAAT
Found at i:76720448 original size:40 final size:40
Alignment explanation
Indices: 76720389--76720595 Score: 195
Period size: 40 Copynumber: 5.2 Consensus size: 40
76720379 CAATTGAATG
* * * *
76720389 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
76720429 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACCT
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGT-AATT
* * *
76720470 -CATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGCT-GTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAG-TAATT
* * *
76720509 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
76720549 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
76720589 ATATCCG
1 ATATCCG
76720596 ATTGTATTCT
Statistics
Matches: 137, Mismatches: 24, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
39 4 0.03
40 128 0.93
41 5 0.04
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:76720527 original size:80 final size:80
Alignment explanation
Indices: 76720390--76720581 Score: 228
Period size: 80 Copynumber: 2.4 Consensus size: 80
76720380 AATTGAATGA
* * ** * * *
76720390 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATTAAATCCGGGCTAAGACCCGAAGG-CA
* *
76720455 -TTGTGCTAGTGAC-C
65 TTTGTGCAAGTCACTC
* *
76720469 TCATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGCT-GTTAAATCCGGGCTAATACCCGAAGGC
1 T-ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAG-TAATTAAATCCGGGCTAAGACCCGAAGGC
*
76720533 ATTTGTGCAAGTCATTC
64 ATTTGTGCAAGTCACTC
76720550 TATCCGGGCTAAGACCCGAAGGCATTCGTGCA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCA
76720582 TGTGGTTATA
Statistics
Matches: 97, Mismatches: 12, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
79 3 0.03
80 91 0.94
81 3 0.03
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.24
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATTAAATCCGGGCTAAGACCCGAAGGCAT
TTGTGCAAGTCACTC
Found at i:76723515 original size:48 final size:48
Alignment explanation
Indices: 76723463--76723653 Score: 220
Period size: 48 Copynumber: 4.0 Consensus size: 48
76723453 ATAGTTTTAT
* * *
76723463 ATGGGACCTCATATCGATTCCAATTCCATATCCCAGATATGGTCTTAC
1 ATGGGATCTCATATCGATGCCAATGCCATATCCCAGATATGGTCTTAC
* * *
76723511 ATGGGATCTCATGTCGATGCCAATGGCATATCCTAGATATGGTCTTAC
1 ATGGGATCTCATATCGATGCCAATGCCATATCCCAGATATGGTCTTAC
* * * * * * *
76723559 ACGGGATCTCATCTCGATGCCTATGTCATATCCCAAATACGGTCCTAC
1 ATGGGATCTCATATCGATGCCAATGCCATATCCCAGATATGGTCTTAC
* * ** *
76723607 AAGGGATCTCATATTGATGCTGATGCCAAATCCCAGATATGGTCTTA
1 ATGGGATCTCATATCGATGCCAATGCCATATCCCAGATATGGTCTTA
76723654 TACAAGATTT
Statistics
Matches: 119, Mismatches: 24, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
48 119 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.30
Consensus pattern (48 bp):
ATGGGATCTCATATCGATGCCAATGCCATATCCCAGATATGGTCTTAC
Done.