Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 244 of 318
Found at i:76734357 original size:14 final size:14
Alignment explanation
Indices: 76734335--76734364 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
76734325 TTGGCAAAAT
76734335 TAAAATTTTGCCCC
1 TAAAATTTTGCCCC
*
76734349 TAAACTTTTGCCCC
1 TAAAATTTTGCCCC
76734363 TA
1 TA
76734365 GGCTCGGTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.27, C:0.30, G:0.07, T:0.37
Consensus pattern (14 bp):
TAAAATTTTGCCCC
Found at i:76738897 original size:14 final size:14
Alignment explanation
Indices: 76738875--76738904 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
76738865 TTGGCAAAAT
76738875 TAAAATTTTGCCCC
1 TAAAATTTTGCCCC
*
76738889 TAAACTTTTGCCCC
1 TAAAATTTTGCCCC
76738903 TA
1 TA
76738905 GGCTCGGTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.27, C:0.30, G:0.07, T:0.37
Consensus pattern (14 bp):
TAAAATTTTGCCCC
Found at i:76740825 original size:29 final size:29
Alignment explanation
Indices: 76740792--76740888 Score: 88
Period size: 29 Copynumber: 3.3 Consensus size: 29
76740782 ATCGATTAAA
*
76740792 GAAAAGGGATAGTTTCGATTATCGACTAT
1 GAAAAGGGATAGTTTCGAATATCGACTAT
* ** ** *
76740821 GAAAAGGGATGGTGACGACCATCGAAC-AC
1 GAAAAGGGATAGTTTCGAATATCG-ACTAT
* **
76740850 GAAAAGGGATAGTTTTGAATATCGGTTAT
1 GAAAAGGGATAGTTTCGAATATCGACTAT
76740879 GAAAAGGGAT
1 GAAAAGGGAT
76740889 GGTGATGACC
Statistics
Matches: 51, Mismatches: 15, Indels: 4
0.73 0.21 0.06
Matches are distributed among these distances:
29 49 0.96
30 2 0.04
ACGTcount: A:0.37, C:0.10, G:0.29, T:0.24
Consensus pattern (29 bp):
GAAAAGGGATAGTTTCGAATATCGACTAT
Found at i:76740873 original size:58 final size:58
Alignment explanation
Indices: 76740792--76740917 Score: 182
Period size: 58 Copynumber: 2.2 Consensus size: 58
76740782 ATCGATTAAA
*
76740792 GAAAAGGGATAGTTTCGATTATCGACTATGAAAAGGGATGGTGACGACCATCGAAC-AC
1 GAAAAGGGATAGTTTCGAATATCGACTATGAAAAGGGATGGTGACGACCATC-AACTAC
* ** * *
76740850 GAAAAGGGATAGTTTTGAATATCGGTTATGAAAAGGGATGGTGATGACCATCAACTAT
1 GAAAAGGGATAGTTTCGAATATCGACTATGAAAAGGGATGGTGACGACCATCAACTAC
76740908 GAAAAGGGAT
1 GAAAAGGGAT
76740918 GGTGACAACC
Statistics
Matches: 61, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
57 3 0.05
58 58 0.95
ACGTcount: A:0.37, C:0.11, G:0.29, T:0.23
Consensus pattern (58 bp):
GAAAAGGGATAGTTTCGAATATCGACTATGAAAAGGGATGGTGACGACCATCAACTAC
Found at i:76740908 original size:29 final size:30
Alignment explanation
Indices: 76740812--76740955 Score: 136
Period size: 29 Copynumber: 5.0 Consensus size: 30
76740802 AGTTTCGATT
76740812 ATCG-ACTATGAAAAGGGATGGTGACGACC
1 ATCGAACTATGAAAAGGGATGGTGACGACC
* * *** **
76740841 ATCGAAC-ACGAAAAGGGATAGTTTTGAAT
1 ATCGAACTATGAAAAGGGATGGTGACGACC
** *
76740870 ATCG-GTTATGAAAAGGGATGGTGATGACC
1 ATCGAACTATGAAAAGGGATGGTGACGACC
*
76740899 ATC-AACTATGAAAAGGGATGGTGACAACC
1 ATCGAACTATGAAAAGGGATGGTGACGACC
* *
76740928 ATCGAA-TATGGAAAGGGATGGTTACGAC
1 ATCGAACTATGAAAAGGGATGGTGACGAC
76740956 ATCATTTAGC
Statistics
Matches: 89, Mismatches: 22, Indels: 8
0.75 0.18 0.07
Matches are distributed among these distances:
29 85 0.96
30 4 0.04
ACGTcount: A:0.37, C:0.13, G:0.29, T:0.21
Consensus pattern (30 bp):
ATCGAACTATGAAAAGGGATGGTGACGACC
Found at i:76746699 original size:90 final size:89
Alignment explanation
Indices: 76746533--76746700 Score: 212
Period size: 90 Copynumber: 1.9 Consensus size: 89
76746523 AAATGCAAAA
* * *
76746533 GCCATGTCCCCGACATGGTCTTATATAGGTACACATACCGATGCCATATCCCAAATATGGTCTTA
1 GCCATGTCCCAGACATGGTCTTATAGAGGTACACATA-CGATGCCATATCCCAAACATGGTCTTA
* *
76746598 TACAAAGTCTCATGTTGGTGTCGGT
65 CACAAAATCTCATGTTGGTGTCGGT
* * * *
76746623 GCCATGTCCCAGACATGGTCTTATACGGGGCTTCACAT-CGATGCCATGTCCCAGACATGGTCTT
1 GCCATGTCCCAGACATGGTCTTATA-GAGG-TACACATACGATGCCATATCCCAAACATGGTCTT
*
76746687 ACATAAAATCTCAT
64 ACACAAAATCTCAT
76746701 ATCAACGACA
Statistics
Matches: 66, Mismatches: 10, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
90 58 0.88
91 2 0.03
92 6 0.09
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.29
Consensus pattern (89 bp):
GCCATGTCCCAGACATGGTCTTATAGAGGTACACATACGATGCCATATCCCAAACATGGTCTTAC
ACAAAATCTCATGTTGGTGTCGGT
Found at i:76746725 original size:42 final size:46
Alignment explanation
Indices: 76746679--76746779 Score: 129
Period size: 48 Copynumber: 2.2 Consensus size: 46
76746669 TGTCCCAGAC
* *
76746679 ATGGTCTTACATAAAATCTCATATC-A-A-CGA-CATATCCTAGAT
1 ATGGTCTTACATAAAATCACATACCGATATCGATCATATCCTAGAT
*
76746721 ATGGTCTTACATGAAATCACATACCGATATCGATGTCATATCCTAGAT
1 ATGGTCTTACATAAAATCACATACCGATATCGA--TCATATCCTAGAT
76746769 ATGGTCTTACA
1 ATGGTCTTACA
76746780 CTTGCACACG
Statistics
Matches: 50, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
42 22 0.44
43 1 0.02
44 1 0.02
45 3 0.06
48 23 0.46
ACGTcount: A:0.35, C:0.21, G:0.13, T:0.32
Consensus pattern (46 bp):
ATGGTCTTACATAAAATCACATACCGATATCGATCATATCCTAGAT
Found at i:76751186 original size:30 final size:29
Alignment explanation
Indices: 76751138--76751197 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 29
76751128 TCCTTAACTC
76751138 AAACTTTTGCAAGATTACAATTTTGCCCCT
1 AAACTTTTGCAAGATTACAATTTT-CCCCT
* *
76751168 AAACTTTTGCATA-TTTACACTTTTCCCCT
1 AAACTTTTGCA-AGATTACAATTTTCCCCT
76751197 A
1 A
76751198 GGCTCGGGAG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
29 6 0.22
30 20 0.74
31 1 0.04
ACGTcount: A:0.28, C:0.25, G:0.07, T:0.40
Consensus pattern (29 bp):
AAACTTTTGCAAGATTACAATTTTCCCCT
Found at i:76759072 original size:40 final size:40
Alignment explanation
Indices: 76759006--76759172 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
76758996 AAATTGAATG
* * *
76759006 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
76759045 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
76759085 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
76759125 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
76759165 ATATCCGG
1 ATATCCGG
76759173 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:76767072 original size:40 final size:40
Alignment explanation
Indices: 76767006--76767172 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
76766996 AAATTGAATG
* * *
76767006 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
76767045 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
76767085 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
76767125 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
76767165 ATATCCGG
1 ATATCCGG
76767173 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:76775922 original size:40 final size:39
Alignment explanation
Indices: 76775877--76776006 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
76775867 CGGAATATAA
76775877 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
76775917 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
76775957 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
76775997 CCGGATATAA
1 CCGGATATAA
76776007 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:76776021 original size:40 final size:40
Alignment explanation
Indices: 76775893--76776043 Score: 146
Period size: 40 Copynumber: 3.8 Consensus size: 40
76775883 ATAACCATGT
* * *
76775893 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
76775933 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
76775973 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* * *
76776013 GCATAATTGTCTTCGGG-ATTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
76776044 CATTCAATTT
Statistics
Matches: 90, Mismatches: 18, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
39 14 0.16
40 74 0.82
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:76776027 original size:80 final size:79
Alignment explanation
Indices: 76775893--76776041 Score: 194
Period size: 80 Copynumber: 1.9 Consensus size: 79
76775883 ATAACCATGT
* *
76775893 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-ATTAGCC
76775958 CGGATGTAGCCACTA
65 CGGATGTAGCCACTA
* * * * *
76775973 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTAGC
76776036 CCGGAT
64 CCGGAT
76776042 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
79 14 0.23
80 46 0.77
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTAGCCC
GGATGTAGCCACTA
Found at i:76784073 original size:28 final size:29
Alignment explanation
Indices: 76784036--76784102 Score: 100
Period size: 28 Copynumber: 2.3 Consensus size: 29
76784026 AAGTCTACAT
*
76784036 ACATGCATATGGCCCACTAGGCCC-AATC
1 ACATTCATATGGCCCACTAGGCCCAAATC
* *
76784064 TCATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCACTAGGCCCAAATC
76784093 ACATTCATAT
1 ACATTCATAT
76784103 ACATGCTTTC
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
28 21 0.62
29 13 0.38
ACGTcount: A:0.30, C:0.31, G:0.13, T:0.25
Consensus pattern (29 bp):
ACATTCATATGGCCCACTAGGCCCAAATC
Found at i:76791008 original size:44 final size:43
Alignment explanation
Indices: 76790936--76791074 Score: 129
Period size: 42 Copynumber: 3.2 Consensus size: 43
76790926 TGTGTTATCG
* * *
76790936 TGTAAGACCACGTCTAGGACGTTGGCATCGAATTGTGATTTACA
1 TGTAAGACCATGTCTGGGACATTGGCATCGAATT-TGATTTACA
* * ** * *
76790980 TGTAAGACCATGTATGGGACATTAGCATCTTATATGATTT-CG
1 TGTAAGACCATGTCTGGGACATTGGCATCGAATTTGATTTACA
* * * *
76791022 TGTAAGACCCTATCTGGGACAATGGCATTGATATTTGA-TTACA
1 TGTAAGACCATGTCTGGGACATTGGCATCGA-ATTTGATTTACA
76791065 TGTAAGACCA
1 TGTAAGACCA
76791075 AATCTGAGAC
Statistics
Matches: 73, Mismatches: 20, Indels: 5
0.74 0.20 0.05
Matches are distributed among these distances:
42 26 0.36
43 21 0.29
44 26 0.36
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.32
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACATTGGCATCGAATTTGATTTACA
Found at i:76793339 original size:27 final size:28
Alignment explanation
Indices: 76793282--76793351 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
76793272 AAACTTGTAC
*
76793282 AGCACTAAGTGTGCGAGTTTGATCATGT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
* *
76793310 AGCACTAAGTGTGCTAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
76793337 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
76793352 GACTCACTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:76807640 original size:40 final size:39
Alignment explanation
Indices: 76807475--76807658 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
76807465 AAATTGAATG
* * *
76807475 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
76807515 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
76807555 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
76807595 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
76807634 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
76807659 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:76807683 original size:80 final size:81
Alignment explanation
Indices: 76807515--76807703 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
76807505 GCTGGAAATT
* * * *
76807515 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
76807580 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
76807596 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
76807659 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
76807675 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
76807704 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:76814066 original size:68 final size:66
Alignment explanation
Indices: 76813994--76814160 Score: 169
Period size: 67 Copynumber: 2.5 Consensus size: 66
76813984 CATCATGTGT
* * * *
76813994 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
76814057 TGTAG
62 TGTAG
** * *
76814062 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
76814127 AG
65 AG
* * *
76814129 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTC
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTC
76814161 TCATAGGTGG
Statistics
Matches: 85, Mismatches: 11, Indels: 8
0.82 0.11 0.08
Matches are distributed among these distances:
64 24 0.28
65 3 0.04
66 13 0.15
67 32 0.38
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:76815295 original size:2 final size:2
Alignment explanation
Indices: 76815288--76815316 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
76815278 TCATGACATG
76815288 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
76815317 GACTAGTCTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:76825741 original size:16 final size:16
Alignment explanation
Indices: 76825720--76825755 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
76825710 GGCAAATCCC
76825720 GAAATGCCGAAAAGCT
1 GAAATGCCGAAAAGCT
*
76825736 GAAATGTCGAAAAGCT
1 GAAATGCCGAAAAGCT
76825752 GAAA
1 GAAA
76825756 GTCTGGCTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.47, C:0.14, G:0.25, T:0.14
Consensus pattern (16 bp):
GAAATGCCGAAAAGCT
Found at i:76826049 original size:28 final size:29
Alignment explanation
Indices: 76825988--76826056 Score: 104
Period size: 28 Copynumber: 2.4 Consensus size: 29
76825978 TTCTTTCCAG
* *
76825988 ATGGGCCATATGAATGTGATTTGGGCCTA
1 ATGGGCCATATGAATGAGATTTGGGCCGA
76826017 ATGGGCCATATGAATGAGA-TTGGGCCGA
1 ATGGGCCATATGAATGAGATTTGGGCCGA
*
76826045 GTGGGCCATATG
1 ATGGGCCATATG
76826057 CATGTATGTA
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
28 19 0.51
29 18 0.49
ACGTcount: A:0.25, C:0.14, G:0.35, T:0.26
Consensus pattern (29 bp):
ATGGGCCATATGAATGAGATTTGGGCCGA
Found at i:76830372 original size:40 final size:40
Alignment explanation
Indices: 76830268--76830394 Score: 195
Period size: 39 Copynumber: 3.2 Consensus size: 40
76830258 GGACTTTAGC
* * * *
76830268 CCGGACAT-ATTTCCAGCACGTAGCCTGCGAACCTTAAGT
1 CCGGATATAATTTCCAGCACATAGCCTGCGGACCCTAAGT
76830307 CCGGATATAA-TTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTTCCAGCACATAGCCTGCGGACCCTAAGT
*
76830346 CCAGATATAATTTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTTCCAGCACATAGCCTGCGGACCCTAAGT
76830386 CCGGATATA
1 CCGGATATA
76830395 CATCACTGAA
Statistics
Matches: 80, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
39 42 0.52
40 38 0.47
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (40 bp):
CCGGATATAATTTCCAGCACATAGCCTGCGGACCCTAAGT
Found at i:76846477 original size:3 final size:3
Alignment explanation
Indices: 76846471--76846593 Score: 85
Period size: 3 Copynumber: 40.3 Consensus size: 3
76846461 AATAATAGCC
* **
76846471 ATA ATA ATA GA-A ATA ATA GTA ATA ATA A-A ATA ATA ACG ATA ATA
1 ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
76846515 ATAA ATCGA ATA ATA TTA ATA ATA ATA ATA ATA GA-A ATA ATA ATA AT-
1 AT-A AT--A ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA
* * *
76846562 ATA AGT- GTA TATA AAA ATA ATA ATA ATG ATA A
1 ATA A-TA ATA -ATA ATA ATA ATA ATA ATA ATA A
76846594 CTAAGATAAT
Statistics
Matches: 94, Mismatches: 15, Indels: 22
0.72 0.11 0.17
Matches are distributed among these distances:
2 7 0.07
3 76 0.81
4 8 0.09
5 3 0.03
ACGTcount: A:0.62, C:0.02, G:0.07, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:76848197 original size:34 final size:35
Alignment explanation
Indices: 76848140--76848211 Score: 128
Period size: 34 Copynumber: 2.1 Consensus size: 35
76848130 GATCTGTTTC
*
76848140 CCTACTGCTTAAGTGGTTAAGATCTGTAAATTCAG
1 CCTACTGCTTAAGGGGTTAAGATCTGTAAATTCAG
76848175 CCTACTGCTT-AGGGGTTAAGATCTGTAAATTCAG
1 CCTACTGCTTAAGGGGTTAAGATCTGTAAATTCAG
76848209 CCT
1 CCT
76848212 GTTACCCTAC
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
34 26 0.72
35 10 0.28
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.33
Consensus pattern (35 bp):
CCTACTGCTTAAGGGGTTAAGATCTGTAAATTCAG
Found at i:76848272 original size:44 final size:43
Alignment explanation
Indices: 76848216--76848361 Score: 118
Period size: 44 Copynumber: 3.3 Consensus size: 43
76848206 CAGCCTGTTA
* *
76848216 CCCTACTACTTAGGGGTTTAAGGCCTGTCGCCTTCGATCTATTT
1 CCCTACTGCTTAGGGGTTTAAGGCCTGTCGACTTCGATCT-TTT
* ** * * * *
76848260 CCCTACTGCTTAGGGGGTTAAGATCTGT-AAATTC-AGCCTGTTA
1 CCCTACTGCTTAGGGGTTTAAGGCCTGTCGACTTCGA-TCT-TTT
* **
76848303 CCCTACTGCTTAGGGGTTTAAGGCCCT-TCGTCTTCGATCTGCT
1 CCCTACTGCTTAGGGGTTTAAGG-CCTGTCGACTTCGATCTTTT
76848346 CCACTACTGCTTAGGG
1 CC-CTACTGCTTAGGG
76848362 AGATAAGATA
Statistics
Matches: 77, Mismatches: 20, Indels: 10
0.72 0.19 0.09
Matches are distributed among these distances:
42 1 0.01
43 31 0.40
44 44 0.57
45 1 0.01
ACGTcount: A:0.17, C:0.27, G:0.23, T:0.34
Consensus pattern (43 bp):
CCCTACTGCTTAGGGGTTTAAGGCCTGTCGACTTCGATCTTTT
Found at i:76848320 original size:87 final size:85
Alignment explanation
Indices: 76848175--76848490 Score: 411
Period size: 87 Copynumber: 3.7 Consensus size: 85
76848165 GTAAATTCAG
*
76848175 CCTACTGCTTA-GGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTACTTAGGGGTTTAAGG
1 CCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGG
*
76848239 CCTGTCGCCTTCGATCTATTTC
66 CCT-TCGTCTTCGATCT-TTTC
76848261 CCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGG
1 CCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGG
**
76848326 CCCTTCGTCTTCGATCTGCTC
66 -CCTTCGTCTTCGATCTTTTC
* * * * ** ** *
76848347 CACTACTGCTTAGGGAGATAAGATATG-CAATTTGGTGTGTTACCCTATTGCTTAGGGGTTTAAG
1 C-CTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAG
* *
76848411 ACCCTTCATCTTCGATCTGTTTC
65 -GCCTTCGTCTTCGATCT-TTTC
* *
76848434 CTTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGCTTGTTACCCTACTGCTTAGGG
1 CCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGG
76848491 AGATAAGGCT
Statistics
Matches: 197, Mismatches: 27, Indels: 11
0.84 0.11 0.05
Matches are distributed among these distances:
86 81 0.41
87 113 0.57
88 3 0.02
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.35
Consensus pattern (85 bp):
CCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGG
CCTTCGTCTTCGATCTTTTC
Found at i:76848732 original size:67 final size:66
Alignment explanation
Indices: 76848580--76848774 Score: 259
Period size: 67 Copynumber: 3.0 Consensus size: 66
76848570 ATGTTTATGC
* * * * * * ** *
76848580 CAAATGATTAGGAAGCTATGATTGAAATGAATCAATTGCTCCTAACTA-A-ATGTAATGCTTATG
1 CAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTGTTATGAATGTG
76848643 T
66 T
* *
76848644 CAAATAATTAGGATGCCATGATCAAAATGAATCAAATGCTCCTAACTAGATGTTGTTATGAATGT
1 CAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATG-TGTTATGAATGT
76848709 GT
65 GT
*
76848711 CAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAATTAGATGTGTTATGAATGT
1 CAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTGTTATGAATGT
76848775 CATATGAATG
Statistics
Matches: 114, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
64 42 0.37
65 1 0.01
66 12 0.11
67 59 0.52
ACGTcount: A:0.37, C:0.12, G:0.18, T:0.32
Consensus pattern (66 bp):
CAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTGTTATGAATGTG
T
Found at i:76853110 original size:6 final size:6
Alignment explanation
Indices: 76853092--76853130 Score: 64
Period size: 6 Copynumber: 6.8 Consensus size: 6
76853082 AATGCAAATG
76853092 ATGC-A ATGC-A ATGCAA ATGCAA ATGCAA ATGCAA ATGCA
1 ATGCAA ATGCAA ATGCAA ATGCAA ATGCAA ATGCAA ATGCA
76853131 TGGAATGAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 9 0.27
6 24 0.73
ACGTcount: A:0.46, C:0.18, G:0.18, T:0.18
Consensus pattern (6 bp):
ATGCAA
Found at i:76856936 original size:30 final size:30
Alignment explanation
Indices: 76856900--76857000 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
76856890 GACAAGATTG
* * *
76856900 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
76856930 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
76856958 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
76856987 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
76857001 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:76857012 original size:29 final size:28
Alignment explanation
Indices: 76856929--76857004 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
76856919 AAAATTGTAC
* *
76856929 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
76856957 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
76856986 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
76857005 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:76864736 original size:30 final size:30
Alignment explanation
Indices: 76864700--76864800 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
76864690 GACAAGATTG
* * *
76864700 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
76864730 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
76864758 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
76864787 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
76864801 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:76864812 original size:29 final size:28
Alignment explanation
Indices: 76864729--76864804 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
76864719 AAAATTGTAC
* *
76864729 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
76864757 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
76864786 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
76864805 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:76866552 original size:2 final size:2
Alignment explanation
Indices: 76866545--76866572 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
76866535 ACTATTAATA
76866545 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
76866573 GAGTGTTAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:76866668 original size:3 final size:3
Alignment explanation
Indices: 76866662--76866782 Score: 79
Period size: 3 Copynumber: 39.3 Consensus size: 3
76866652 AATAATAGCC
* **
76866662 ATA ATA ATA GA-A ATA ATA GTA ATA ATA A-A ATA ATA ACG ATA ATA
1 ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* **
76866706 ATAA ATCGA ATA ATA TTA ATA ATA ATA ATA GCA ATA ATA ATA AT- ATA
1 AT-A AT--A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* *
76866753 AGT- ATA TATGA AAA ATA ATA ATA ATG ATA A
1 A-TA ATA -AT-A ATA ATA ATA ATA ATA ATA A
76866783 CTAAGATAAT
Statistics
Matches: 91, Mismatches: 17, Indels: 20
0.71 0.13 0.16
Matches are distributed among these distances:
2 6 0.07
3 73 0.80
4 8 0.09
5 4 0.04
ACGTcount: A:0.61, C:0.02, G:0.07, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:76866684 original size:18 final size:17
Alignment explanation
Indices: 76866647--76866750 Score: 75
Period size: 18 Copynumber: 5.5 Consensus size: 17
76866637 CTCAAAAAGA
76866647 AATAAAATAATAGCCATAAT
1 AATAAAATAATAG---TAAT
76866667 AATAGAAATAATAGTAAT
1 AATA-AAATAATAGTAAT
76866685 AATAAAATAATAACGATAAT
1 AATAAAATAAT-A-G-TAAT
* *
76866705 AAT-AAATCGAATAATATT
1 AATAAAAT--AATAGTAAT
*
76866723 AATAATAATAATAGCAAT
1 AATAA-AATAATAGTAAT
76866741 AATAATAATA
1 AATAA-AATA
76866751 TAAGTATATA
Statistics
Matches: 71, Mismatches: 5, Indels: 18
0.76 0.05 0.19
Matches are distributed among these distances:
17 7 0.10
18 31 0.44
19 6 0.08
20 15 0.21
21 12 0.17
ACGTcount: A:0.62, C:0.05, G:0.06, T:0.28
Consensus pattern (17 bp):
AATAAAATAATAGTAAT
Found at i:76870293 original size:47 final size:47
Alignment explanation
Indices: 76870209--76870748 Score: 782
Period size: 47 Copynumber: 11.3 Consensus size: 47
76870199 GAGATATATA
* *
76870209 TATATATGTGATAAGGCGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAA-G-GCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
76870258 CATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
76870305 TATATATGTGACAAGGCCTAATGGCCGATGATG-TGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATG-TGATGAATGTGAAAGTG
* *
76870352 TATATATGTGAAAAGGCCTAATGGCCCATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
76870399 CATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAAGTG
76870447 TATAATATGTG-TGAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TAT-ATATGTGAT-AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
76870495 ATAATATATGTGATAAGGCCTTAATGGCCGATGTGATGAATGTGAAAGTG
1 -T-ATATATGTGATAAGGCC-TAATGGCCGATGTGATGAATGTGAAAGTG
*
76870545 TATATATGTGA-CAGGCCTAATGGCCCGATGTAGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGG-CCGATGT-GATGAATGTGAAAGTG
* *
76870593 TATATATGTGACAAGGCCTAATGGCCCATGTGATGAATGTGAAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAAGTG
* * *
76870641 CATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTG-AAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * * *
76870687 TATATATGTGATAAGGCCGAGTGGCCAATGTGATGGATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
76870734 TATAAATGTGATAAG
1 TATATATGTGATAAG
76870749 TCCCGAAGGG
Statistics
Matches: 455, Mismatches: 22, Indels: 30
0.90 0.04 0.06
Matches are distributed among these distances:
46 51 0.11
47 193 0.42
48 104 0.23
49 75 0.16
50 32 0.07
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.28
Consensus pattern (47 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:76870674 original size:22 final size:22
Alignment explanation
Indices: 76870646--76870720 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
76870636 AAGTGCATAT
76870646 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * ***
76870668 ATGTGATGAATG-TGAAGTGTATA
1 ATGTGAT-AAGGCCGAA-TGGCCA
*
76870691 TATGTGATAAGGCCGAGTGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
76870714 ATGTGAT
1 ATGTGAT
76870721 GGATGTGAAA
Statistics
Matches: 38, Mismatches: 11, Indels: 8
0.67 0.19 0.14
Matches are distributed among these distances:
22 17 0.45
23 12 0.32
24 9 0.24
ACGTcount: A:0.31, C:0.11, G:0.32, T:0.27
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:76870924 original size:37 final size:37
Alignment explanation
Indices: 76870865--76870947 Score: 121
Period size: 37 Copynumber: 2.2 Consensus size: 37
76870855 CCGAGCTCTA
* * *
76870865 AAGACCCGATGACTACGTGTGGAGATTATGTCTGGGT
1 AAGACCCGATGACCACGGGTGGAGATTATGTCCGGGT
*
76870902 AAGACCCGATGACCACGGGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACCACGGGTGGAGATTATGTCCGGGT
*
76870939 AAGCCCCGA
1 AAGACCCGA
76870948 ACTAAAGGTT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.24, C:0.22, G:0.33, T:0.22
Consensus pattern (37 bp):
AAGACCCGATGACCACGGGTGGAGATTATGTCCGGGT
Found at i:76878982 original size:40 final size:40
Alignment explanation
Indices: 76878923--76879064 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
76878913 AAATTGAATG
* * *
76878923 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
76878963 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
76879003 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
76879043 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
76879065 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:76879065 original size:40 final size:39
Alignment explanation
Indices: 76878962--76879090 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
76878952 TGCTGGAAAT
* * *
76878962 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
76879002 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
76879042 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
76879082 TATATCCGG
1 TATATCCGG
76879091 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:76886986 original size:40 final size:40
Alignment explanation
Indices: 76886920--76887062 Score: 130
Period size: 40 Copynumber: 3.6 Consensus size: 40
76886910 AAATTGAATG
* * *
76886920 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGAAACT
* * ***
76886959 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGAAACT
* * ** *
76886999 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-ATGCTAGAAACT
*
76887039 CTATCCGGGCT-AGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
76887063 TTTGTGCACG
Statistics
Matches: 87, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
39 28 0.32
40 59 0.68
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGAAACT
Found at i:76887063 original size:39 final size:39
Alignment explanation
Indices: 76886958--76887085 Score: 143
Period size: 40 Copynumber: 3.2 Consensus size: 39
76886948 TGCTGGAAAT
* * *
76886958 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
76886998 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
76887038 TCTATCCGGGCT-AGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
76887077 TATATCCGG
1 TATATCCGG
76887086 TTATATTCCG
Statistics
Matches: 77, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
38 1 0.01
39 32 0.42
40 44 0.57
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:76897291 original size:15 final size:15
Alignment explanation
Indices: 76897271--76897311 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
76897261 TGTTAGACTC
76897271 GAAAGTGAATGATAA
1 GAAAGTGAATGATAA
76897286 GAAAGTGAATGATAA
1 GAAAGTGAATGATAA
*
76897301 GTAAGTTGAAT
1 GAAAG-TGAAT
76897312 CAGTGCCTGT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 19 0.79
16 5 0.21
ACGTcount: A:0.49, C:0.00, G:0.27, T:0.24
Consensus pattern (15 bp):
GAAAGTGAATGATAA
Found at i:76901455 original size:44 final size:44
Alignment explanation
Indices: 76901391--76901521 Score: 146
Period size: 42 Copynumber: 3.0 Consensus size: 44
76901381 GTTGACATTA
* *
76901391 ATTTGAGA--TATCGTGTAAGACCGTGTCTGGGACACAGGCCTCG
1 ATTTGAGATTTAT-GTGTAAGACCATGTCTGGGACACAGGCATCG
*
76901434 ATTTGAGATTTATGTGTAAGACCATGTCTGGGACATAGGCATCG
1 ATTTGAGATTTATGTGTAAGACCATGTCTGGGACACAGGCATCG
* * * *
76901478 TATCT--GATTT-TGTGTAAGACCCTGTTTGGGACAGAGGCATCG
1 -ATTTGAGATTTATGTGTAAGACCATGTCTGGGACACAGGCATCG
76901520 AT
1 AT
76901522 GCTGAATTAC
Statistics
Matches: 78, Mismatches: 7, Indels: 8
0.84 0.08 0.09
Matches are distributed among these distances:
41 2 0.03
42 29 0.37
43 13 0.17
44 28 0.36
45 6 0.08
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (44 bp):
ATTTGAGATTTATGTGTAAGACCATGTCTGGGACACAGGCATCG
Found at i:76904735 original size:53 final size:54
Alignment explanation
Indices: 76904670--76904875 Score: 202
Period size: 53 Copynumber: 3.8 Consensus size: 54
76904660 TTCCTTTTTA
* * *
76904670 AACTTGCCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATAG
* * * * ** * *
76904723 AACTCT-CCATTGCCATGCCTTGGCAAGGTCTTACATGGGATCTTTGCCTTATCG
1 AACT-TACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATAG
** * * * * *
76904777 TAGTTTATCAATACCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAA
1 -AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATAG
*
76904832 AACTTACCAATGCCATGTCTTG-CATGGTCTTACTTGATATCCTT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTT
76904876 AAACCCTAAT
Statistics
Matches: 123, Mismatches: 26, Indels: 8
0.78 0.17 0.05
Matches are distributed among these distances:
53 65 0.53
54 21 0.17
55 37 0.30
ACGTcount: A:0.21, C:0.24, G:0.17, T:0.38
Consensus pattern (54 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATAG
Found at i:76905247 original size:30 final size:30
Alignment explanation
Indices: 76905213--76905270 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
76905203 CCTTAACTCT
76905213 AACTTTGGCAAAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
* * * *
76905243 AACTTTTGCATATTTACACTTTTTCCCC
1 AACTTTGGCAAAATTACACTTTTGCCCC
76905271 AAGGCTCGGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.07, T:0.40
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:76909287 original size:13 final size:13
Alignment explanation
Indices: 76909269--76909307 Score: 78
Period size: 13 Copynumber: 3.0 Consensus size: 13
76909259 TGATAGGGTT
76909269 TTGTTTTTGGGAA
1 TTGTTTTTGGGAA
76909282 TTGTTTTTGGGAA
1 TTGTTTTTGGGAA
76909295 TTGTTTTTGGGAA
1 TTGTTTTTGGGAA
76909308 AATCGATTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.15, C:0.00, G:0.31, T:0.54
Consensus pattern (13 bp):
TTGTTTTTGGGAA
Found at i:76912132 original size:28 final size:27
Alignment explanation
Indices: 76912101--76912193 Score: 100
Period size: 27 Copynumber: 3.4 Consensus size: 27
76912091 ATAACGTGAT
*
76912101 AGAGTCACCAGATACAGATAATCGTGGC
1 AGAGCCACCAGATACAGATAAT-GTGGC
* *
76912129 AGAGCCACCAGA-ACAAATATATGTGGT
1 AGAGCCACCAGATACAGATA-ATGTGGC
*
76912156 AGAGCCACCAGAT-CAGATAATTGTTGC
1 AGAGCCACCAGATACAGATAA-TGTGGC
*
76912183 ATAGCCACCAG
1 AGAGCCACCAG
76912194 GACACTTCCT
Statistics
Matches: 55, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
26 1 0.02
27 41 0.75
28 13 0.24
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.18
Consensus pattern (27 bp):
AGAGCCACCAGATACAGATAATGTGGC
Found at i:76912141 original size:54 final size:54
Alignment explanation
Indices: 76912082--76912193 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
76912072 AGCATGGCTG
*
76912082 CCAGAACAAATA-ACGTGATAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAAATATACGTGATAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * * * *
76912136 CCAGAACAAATATATGTGGTAGAGCCACCAGATCAGATAATTGTTGCATAGCCA
1 CCAGAACAAATATACGTGATAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
76912190 CCAG
1 CCAG
76912194 GACACTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 34 0.67
55 17 0.33
ACGTcount: A:0.38, C:0.22, G:0.21, T:0.18
Consensus pattern (54 bp):
CCAGAACAAATATACGTGATAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:76912160 original size:27 final size:26
Alignment explanation
Indices: 76912082--76912176 Score: 100
Period size: 27 Copynumber: 3.5 Consensus size: 26
76912072 AGCATGGCTG
* * *
76912082 CCAGAACAAATAACGTGATAGAGTCA
1 CCAGAACAAATAATGTGGTAGAGCCA
* *
76912108 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAAATAAT-GTGGTAGAGCCA
76912136 CCAGAACAAATATATGTGGTAGAGCCA
1 CCAGAACAAATA-ATGTGGTAGAGCCA
* *
76912163 CCAGATCAGATAAT
1 CCAGAACAAATAAT
76912177 TGTTGCATAG
Statistics
Matches: 57, Mismatches: 9, Indels: 6
0.79 0.12 0.08
Matches are distributed among these distances:
26 7 0.12
27 34 0.60
28 16 0.28
ACGTcount: A:0.41, C:0.21, G:0.21, T:0.17
Consensus pattern (26 bp):
CCAGAACAAATAATGTGGTAGAGCCA
Found at i:76914540 original size:27 final size:27
Alignment explanation
Indices: 76914510--76914615 Score: 137
Period size: 27 Copynumber: 3.9 Consensus size: 27
76914500 GGCTGCTAGA
*
76914510 ACAGATAATG-GGACAGAGTCACCAGAT
1 ACAGATAATGTGG-CAGAGCCACCAGAT
76914537 ACAGATAATCGTGGCAGAGCCACCAGA-
1 ACAGATAAT-GTGGCAGAGCCACCAGAT
76914564 ACAGATATATGTGGCAGAGCCACCAGAT
1 ACAGATA-ATGTGGCAGAGCCACCAGAT
*
76914592 -CAGATAATTGTGGCATAGCCACCA
1 ACAGATAA-TGTGGCAGAGCCACCA
76914616 AGACGCTTCC
Statistics
Matches: 72, Mismatches: 2, Indels: 10
0.86 0.02 0.12
Matches are distributed among these distances:
26 1 0.01
27 54 0.75
28 15 0.21
29 2 0.03
ACGTcount: A:0.37, C:0.23, G:0.25, T:0.16
Consensus pattern (27 bp):
ACAGATAATGTGGCAGAGCCACCAGAT
Found at i:76914596 original size:54 final size:54
Alignment explanation
Indices: 76914507--76914615 Score: 159
Period size: 54 Copynumber: 2.0 Consensus size: 54
76914497 CATGGCTGCT
*
76914507 AGAACAGATAATGGGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCACC
1 AGAACAGATAATGGGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCACC
* *
76914561 AGAACAGATATATGTGG-CAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCACC
1 AGAACAGATA-ATG-GGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCACC
76914615 A
1 A
76914616 AGACGCTTCC
Statistics
Matches: 50, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
54 32 0.64
55 16 0.32
56 2 0.04
ACGTcount: A:0.38, C:0.22, G:0.25, T:0.16
Consensus pattern (54 bp):
AGAACAGATAATGGGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCACC
Found at i:76916064 original size:24 final size:24
Alignment explanation
Indices: 76916029--76916129 Score: 148
Period size: 24 Copynumber: 4.2 Consensus size: 24
76916019 CCAACACTGT
* * *
76916029 TCTCCCTAATCAGCTTCTAAATCC
1 TCTCCCTTATCAACTCCTAAATCC
*
76916053 TCTCCCTTATCAGCTCCTAAATCC
1 TCTCCCTTATCAACTCCTAAATCC
*
76916077 TATCCCTTATCAACTCCTAAATCC
1 TCTCCCTTATCAACTCCTAAATCC
*
76916101 TATCCCTTATCAACTCCTAAATCC
1 TCTCCCTTATCAACTCCTAAATCC
76916125 TCTCC
1 TCTCC
76916130 TGACAGACTT
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 72 1.00
ACGTcount: A:0.25, C:0.40, G:0.02, T:0.34
Consensus pattern (24 bp):
TCTCCCTTATCAACTCCTAAATCC
Found at i:76922436 original size:27 final size:27
Alignment explanation
Indices: 76922406--76922511 Score: 128
Period size: 27 Copynumber: 3.9 Consensus size: 27
76922396 GGCTGCTAGA
*
76922406 ACAGATAATG-GGACAGAGTCACCAGAT
1 ACAGATAATGTGG-CAGAGCCACCAGAT
*
76922433 ACAGATAATCGTGGTAGAGCCACCAGA-
1 ACAGATAAT-GTGGCAGAGCCACCAGAT
76922460 ACAGATATATGTGGCAGAGCCACCAGAT
1 ACAGATA-ATGTGGCAGAGCCACCAGAT
*
76922488 -CAGATAATTGTGGCATAGCCACCA
1 ACAGATAA-TGTGGCAGAGCCACCA
76922512 AGACGCTTCC
Statistics
Matches: 70, Mismatches: 4, Indels: 10
0.83 0.05 0.12
Matches are distributed among these distances:
26 1 0.01
27 53 0.76
28 14 0.20
29 2 0.03
ACGTcount: A:0.37, C:0.22, G:0.25, T:0.17
Consensus pattern (27 bp):
ACAGATAATGTGGCAGAGCCACCAGAT
Found at i:76922492 original size:54 final size:54
Alignment explanation
Indices: 76922403--76922511 Score: 150
Period size: 54 Copynumber: 2.0 Consensus size: 54
76922393 CATGGCTGCT
* *
76922403 AGAACAGATAATGGGACAGAGTCACCAGATACAGATAATCGTGGTAGAGCCACC
1 AGAACAGATAATGGGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCACC
* *
76922457 AGAACAGATATATGTGG-CAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCACC
1 AGAACAGATA-ATG-GGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCACC
76922511 A
1 A
76922512 AGACGCTTCC
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
54 31 0.63
55 16 0.33
56 2 0.04
ACGTcount: A:0.38, C:0.21, G:0.25, T:0.17
Consensus pattern (54 bp):
AGAACAGATAATGGGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCACC
Found at i:76923950 original size:24 final size:24
Alignment explanation
Indices: 76923923--76924022 Score: 155
Period size: 24 Copynumber: 4.2 Consensus size: 24
76923913 CCAACACTGT
*
76923923 TCTCCCTAATCAACTCCTAAATCC
1 TCTCCCTTATCAACTCCTAAATCC
*
76923947 TCTCCCTTATCAGCTCCTAAATCC
1 TCTCCCTTATCAACTCCTAAATCC
*
76923971 TATCCCTTATCAACTCCTAAATCC
1 TCTCCCTTATCAACTCCTAAATCC
* *
76923995 TATCCCCTATCAACTCCTAAATCC
1 TCTCCCTTATCAACTCCTAAATCC
76924019 TCTC
1 TCTC
76924023 ATGACAGACT
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 70 1.00
ACGTcount: A:0.26, C:0.41, G:0.01, T:0.32
Consensus pattern (24 bp):
TCTCCCTTATCAACTCCTAAATCC
Found at i:76925352 original size:5 final size:5
Alignment explanation
Indices: 76925342--76925375 Score: 50
Period size: 5 Copynumber: 6.4 Consensus size: 5
76925332 AGTTTTAATA
76925342 AAAAT AAAAT AAAAT AAAAT AAAACAT AAAAT AA
1 AAAAT AAAAT AAAAT AAAAT -AAA-AT AAAAT AA
76925376 TAAATAAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
5 19 0.70
6 6 0.22
7 2 0.07
ACGTcount: A:0.79, C:0.03, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:76928600 original size:40 final size:39
Alignment explanation
Indices: 76928432--76928602 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
76928422 AGAAATTGAA
* *
76928432 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
76928472 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
76928512 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
76928552 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
76928592 TGATATCCGGG
1 TGATATCCGGG
76928603 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:76936719 original size:40 final size:39
Alignment explanation
Indices: 76936551--76936721 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
76936541 AGAAATTGAA
* *
76936551 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
76936591 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
76936631 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
76936671 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
76936711 TGATATCCGGG
1 TGATATCCGGG
76936722 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:76942583 original size:22 final size:22
Alignment explanation
Indices: 76942549--76942626 Score: 86
Period size: 22 Copynumber: 3.5 Consensus size: 22
76942539 GCCTGTGACG
* *
76942549 TTGAGTCGCCCTGTATAC-GACA
1 TTGAGCCGTCCTGTATACAG-CA
*
76942571 TTGAGCCGTCCTGTCTACAGCA
1 TTGAGCCGTCCTGTATACAGCA
* *
76942593 TTGAGCCGTCCTGTCTACAGCG
1 TTGAGCCGTCCTGTATACAGCA
*
76942615 TTGAGTCGTCCT
1 TTGAGCCGTCCT
76942627 ATTGACTTGG
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
22 49 0.98
23 1 0.02
ACGTcount: A:0.17, C:0.29, G:0.24, T:0.29
Consensus pattern (22 bp):
TTGAGCCGTCCTGTATACAGCA
Found at i:76944803 original size:149 final size:150
Alignment explanation
Indices: 76944530--76944830 Score: 534
Period size: 149 Copynumber: 2.0 Consensus size: 150
76944520 AGGAAGTGTT
*
76944530 GGAGAAATCTTGGGTTCAAACCTGGGCTTTAGTAAAAATTTTGGTTTTAAGTGAATAAAACGCTA
1 GGAGAAATATTGGGTTCAAACCTGGGCTTTAGTAAAAATTTTGGTTTTAAGTGAATAAAACGCTA
*
76944595 GGTGCTTGGATGAAGGCCTTTTAAATTATTGTGGTAAATAAATAACACAAGGAAGCATGTGATCT
66 GGTGCTTGGATGAAGGCCTTTTAAATTATTGTGGTAAATAAATAACACAAGGAAACATGTGATCT
76944660 AGTGGTTGTGGCGTCATTAA
131 AGTGGTTGTGGCGTCATTAA
* *
76944680 GGAGAAATATTGGGTTCCAGCCTGGGCTTTAGTAAAAATTTTGGTTTTAAGT-AATAAAATC-CT
1 GGAGAAATATTGGGTTCAAACCTGGGCTTTAGTAAAAATTTTGGTTTTAAGTGAATAAAA-CGCT
*
76944743 AGGTGCTTGGATGAAGGCCTTTTAAATTATTGTGGTAAATAAATAACACAAGGAAACATGTGGTC
65 AGGTGCTTGGATGAAGGCCTTTTAAATTATTGTGGTAAATAAATAACACAAGGAAACATGTGATC
76944808 TAGTGGTTGTGGCGTCATTAA
130 TAGTGGTTGTGGCGTCATTAA
76944829 GG
1 GG
76944831 TTGCAAGTAA
Statistics
Matches: 145, Mismatches: 5, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
149 95 0.66
150 50 0.34
ACGTcount: A:0.32, C:0.11, G:0.26, T:0.32
Consensus pattern (150 bp):
GGAGAAATATTGGGTTCAAACCTGGGCTTTAGTAAAAATTTTGGTTTTAAGTGAATAAAACGCTA
GGTGCTTGGATGAAGGCCTTTTAAATTATTGTGGTAAATAAATAACACAAGGAAACATGTGATCT
AGTGGTTGTGGCGTCATTAA
Found at i:76945588 original size:19 final size:19
Alignment explanation
Indices: 76945554--76945595 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
76945544 TAGGTAGTTT
76945554 TGGGCCACGTTGGGCCTAGA
1 TGGGCCACGTTGGGCCTA-A
*
76945574 TGGGCCATG-TGGGCCTAA
1 TGGGCCACGTTGGGCCTAA
76945592 TGGG
1 TGGG
76945596 TTCGTGAGCC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 5 0.24
19 8 0.38
20 8 0.38
ACGTcount: A:0.14, C:0.21, G:0.43, T:0.21
Consensus pattern (19 bp):
TGGGCCACGTTGGGCCTAA
Found at i:76946177 original size:22 final size:22
Alignment explanation
Indices: 76946136--76946178 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
76946126 GGCCTTTAGC
* *
76946136 CGTCCTGTCTATGACGTTGAGT
1 CGTCCTATCTATGACATTGAGT
*
76946158 CGTCCTATCTATGGCATTGAG
1 CGTCCTATCTATGACATTGAG
76946179 CTGTCTTGTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.16, C:0.23, G:0.26, T:0.35
Consensus pattern (22 bp):
CGTCCTATCTATGACATTGAGT
Found at i:76948961 original size:44 final size:44
Alignment explanation
Indices: 76948887--76948987 Score: 123
Period size: 44 Copynumber: 2.3 Consensus size: 44
76948877 CCACGATATT
* * ** *
76948887 TACGGCCTTTAGCCATCCTGTCTATGACATTGAGTCGT-CTTGTC
1 TACGGCGTTGAGCCATCCTGTCTACAACATTGAGCCGTCCTT-TC
* *
76948931 TATGGCGTTGAGCCATCCTGTGTACAACATTGAGCCGTCCTTTC
1 TACGGCGTTGAGCCATCCTGTCTACAACATTGAGCCGTCCTTTC
76948975 TACGGCGTTGAGC
1 TACGGCGTTGAGC
76948988 TGTCCTATTG
Statistics
Matches: 48, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
44 45 0.94
45 3 0.06
ACGTcount: A:0.17, C:0.27, G:0.24, T:0.33
Consensus pattern (44 bp):
TACGGCGTTGAGCCATCCTGTCTACAACATTGAGCCGTCCTTTC
Found at i:76948985 original size:22 final size:22
Alignment explanation
Indices: 76948916--76948993 Score: 59
Period size: 22 Copynumber: 3.5 Consensus size: 22
76948906 GTCTATGACA
* *
76948916 TTGAGTCGT-CTTGTCTATGGCG
1 TTGAGCCGTCCTT-TCTACGGCG
* * * ** *
76948938 TTGAGCCATCCTGTGTACAACA
1 TTGAGCCGTCCTTTCTACGGCG
76948960 TTGAGCCGTCCTTTCTACGGCG
1 TTGAGCCGTCCTTTCTACGGCG
*
76948982 TTGAGCTGTCCT
1 TTGAGCCGTCCT
76948994 ATTGACTTGG
Statistics
Matches: 40, Mismatches: 15, Indels: 2
0.70 0.26 0.04
Matches are distributed among these distances:
22 38 0.95
23 2 0.05
ACGTcount: A:0.14, C:0.26, G:0.26, T:0.35
Consensus pattern (22 bp):
TTGAGCCGTCCTTTCTACGGCG
Found at i:76952064 original size:29 final size:29
Alignment explanation
Indices: 76952030--76952105 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
76952020 TACTCGATTT
* * *
76952030 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * * *
76952059 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATACCATTCAAGCC
76952088 CGCACACTTAGTGCCATA
1 CGCACACTTAGTGCCATA
76952106 TATTTCCAGC
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.25, C:0.34, G:0.18, T:0.22
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACCATTCAAGCC
Found at i:76952121 original size:29 final size:29
Alignment explanation
Indices: 76952089--76952161 Score: 128
Period size: 29 Copynumber: 2.5 Consensus size: 29
76952079 CTTCGAGCTC
76952089 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
* *
76952118 GCACACTCAGTGCCATATTTTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
76952147 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
76952162 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.30, G:0.15, T:0.29
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:76952122 original size:58 final size:59
Alignment explanation
Indices: 76952029--76952161 Score: 139
Period size: 58 Copynumber: 2.3 Consensus size: 59
76952019 ATACTCGATT
* * *
76952029 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACAT-AGTGCCATACCCTTCGAGC-
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACAC-TCAGTGCCATACCCTTCCAGCA
* * * ***
76952087 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTCAGTGCCATATTTTTCCAGCA
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACTCAGTGCCATACCCTTCCAGCA
76952146 T-GCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
76952162 ATCTCGTCAC
Statistics
Matches: 63, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
57 5 0.08
58 57 0.90
59 1 0.02
ACGTcount: A:0.25, C:0.32, G:0.17, T:0.26
Consensus pattern (59 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACTCAGTGCCATACCCTTCCAGCA
Found at i:76954060 original size:40 final size:40
Alignment explanation
Indices: 76954015--76954144 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
76954005 CGGAATACAA
76954015 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
76954055 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
76954095 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
76954135 CCGGATATAA
1 CCGGATATAA
76954145 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:76954159 original size:40 final size:40
Alignment explanation
Indices: 76954015--76954182 Score: 153
Period size: 40 Copynumber: 4.2 Consensus size: 40
76954005 CGGAATACAA
* **
76954015 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
76954055 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
76954095 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * * *
76954135 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
76954175 CCGGATAT
1 CCGGATAT
76954183 CATTCAATTT
Statistics
Matches: 104, Mismatches: 21, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 2 0.02
40 102 0.98
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:76961566 original size:22 final size:22
Alignment explanation
Indices: 76961539--76961583 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
76961529 ATTATGTGTA
76961539 TTAATTAATAAT-CAAATTAATT
1 TTAATTAAT-ATCCAAATTAATT
* *
76961561 TTAATTTATATCCAATTTAATT
1 TTAATTAATATCCAAATTAATT
76961583 T
1 T
76961584 GGGTTAATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 2 0.10
22 18 0.90
ACGTcount: A:0.42, C:0.07, G:0.00, T:0.51
Consensus pattern (22 bp):
TTAATTAATATCCAAATTAATT
Found at i:76963542 original size:40 final size:40
Alignment explanation
Indices: 76963487--76963654 Score: 196
Period size: 40 Copynumber: 4.2 Consensus size: 40
76963477 TGAATGATAC
* *
76963487 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
76963527 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * ** *
76963567 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * *
76963607 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
76963647 CC-GGCTAA
1 CCGGGCTAA
76963655 ATTCCGAAGA
Statistics
Matches: 106, Mismatches: 20, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 6 0.06
40 98 0.92
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:76978160 original size:12 final size:12
Alignment explanation
Indices: 76978145--76978169 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
76978135 AAATGAAATA
76978145 ATATCTTATAAT
1 ATATCTTATAAT
76978157 ATATCTTATAAT
1 ATATCTTATAAT
76978169 A
1 A
76978170 ACATAATTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.48
Consensus pattern (12 bp):
ATATCTTATAAT
Found at i:76988994 original size:28 final size:27
Alignment explanation
Indices: 76988931--76989000 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
76988921 ATAGTGAGTC
76988931 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
76988958 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
76988986 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
76989001 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:76990935 original size:27 final size:26
Alignment explanation
Indices: 76990897--76991011 Score: 140
Period size: 27 Copynumber: 4.3 Consensus size: 26
76990887 AGCATGGCTG
* *
76990897 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
76990923 GCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
76990951 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
76990978 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
76991005 CCAGAAC
1 CCAGAAC
76991012 GCTTCCTCCA
Statistics
Matches: 78, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
26 4 0.05
27 58 0.74
28 16 0.21
ACGTcount: A:0.37, C:0.23, G:0.24, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:76990961 original size:54 final size:54
Alignment explanation
Indices: 76990897--76991011 Score: 160
Period size: 54 Copynumber: 2.1 Consensus size: 54
76990887 AGCATGGCTG
* *
76990897 CCAGAACAGATA-ATGTGACAGAGTCAGCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * * *
76990951 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
76991005 CCAGAAC
1 CCAGAAC
76991012 GCTTCCTCCA
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
54 37 0.69
55 17 0.31
ACGTcount: A:0.37, C:0.23, G:0.24, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:76992673 original size:26 final size:26
Alignment explanation
Indices: 76992635--76992718 Score: 141
Period size: 26 Copynumber: 3.2 Consensus size: 26
76992625 CATGAAATTC
* *
76992635 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTA
76992661 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
*
76992687 TTATCATTGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
76992713 TTATCA
1 TTATCA
76992719 ATTTGTATCA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.36, C:0.24, G:0.05, T:0.36
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCTA
Found at i:76998977 original size:27 final size:26
Alignment explanation
Indices: 76998940--76999053 Score: 147
Period size: 27 Copynumber: 4.3 Consensus size: 26
76998930 AGCATGGCTG
* *
76998940 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
76998966 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
76998994 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* ** *
76999021 CCAGATCAGATTTTGTGGCATAGCCA
1 CCAGAACAGATAATGTGGCAGAGCCA
76999047 CCAGAAC
1 CCAGAAC
76999054 GCTTCCTCCA
Statistics
Matches: 78, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
26 23 0.29
27 38 0.49
28 17 0.22
ACGTcount: A:0.36, C:0.24, G:0.24, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:77000694 original size:26 final size:26
Alignment explanation
Indices: 77000656--77000738 Score: 141
Period size: 26 Copynumber: 3.2 Consensus size: 26
77000646 CATGAAATTC
* *
77000656 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTA
77000682 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
77000708 TTATCAT-GAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
77000733 TTATCA
1 TTATCA
77000739 ATTTGTATCA
Statistics
Matches: 55, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
25 24 0.44
26 31 0.56
ACGTcount: A:0.36, C:0.24, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCTA
Found at i:77000742 original size:20 final size:22
Alignment explanation
Indices: 77000665--77000739 Score: 78
Period size: 25 Copynumber: 3.1 Consensus size: 22
77000655 CTTATCATGA
*
77000665 AACATTTACCTAACCCATTATC
1 AACATTTACCTAACCTATTATC
77000687 ATGGAACATTTACCTAACCTATTATC
1 ----AACATTTACCTAACCTATTATC
77000713 ATGAACATTTACCTAACCTATTATC
1 ---AACATTTACCTAACCTATTATC
77000738 AA
1 AA
77000740 TTTGTATCAA
Statistics
Matches: 46, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
22 2 0.04
25 23 0.50
26 21 0.46
ACGTcount: A:0.37, C:0.25, G:0.04, T:0.33
Consensus pattern (22 bp):
AACATTTACCTAACCTATTATC
Found at i:77001244 original size:23 final size:23
Alignment explanation
Indices: 77001214--77001260 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
77001204 CCAACGGAAC
77001214 CGACTTCCTTCTTAGAACTTTAA
1 CGACTTCCTTCTTAGAACTTTAA
77001237 CGACTTCCTTCTTAGAACTTTAA
1 CGACTTCCTTCTTAGAACTTTAA
77001260 C
1 C
77001261 CTCTCGATCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.09, T:0.38
Consensus pattern (23 bp):
CGACTTCCTTCTTAGAACTTTAA
Found at i:77006009 original size:16 final size:16
Alignment explanation
Indices: 77005988--77006019 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
77005978 CAATCTTTAT
77005988 AAAATTTTCGTTTTTG
1 AAAATTTTCGTTTTTG
*
77006004 AAAATTTTTGTTTTTG
1 AAAATTTTCGTTTTTG
77006020 TAAACCCATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.03, G:0.12, T:0.59
Consensus pattern (16 bp):
AAAATTTTCGTTTTTG
Found at i:77007015 original size:27 final size:26
Alignment explanation
Indices: 77006978--77007092 Score: 149
Period size: 27 Copynumber: 4.3 Consensus size: 26
77006968 AGCATGGCTG
* *
77006978 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
77007004 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
77007032 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
77007059 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
77007086 CCAGAAC
1 CCAGAAC
77007093 GCTTCCTCCA
Statistics
Matches: 80, Mismatches: 6, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
26 5 0.06
27 58 0.73
28 17 0.21
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:77007037 original size:54 final size:54
Alignment explanation
Indices: 77006978--77007092 Score: 169
Period size: 54 Copynumber: 2.1 Consensus size: 54
77006968 AGCATGGCTG
*
77006978 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * * *
77007032 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
77007086 CCAGAAC
1 CCAGAAC
77007093 GCTTCCTCCA
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
54 37 0.67
55 18 0.33
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:77008744 original size:26 final size:26
Alignment explanation
Indices: 77008708--77008817 Score: 177
Period size: 26 Copynumber: 4.2 Consensus size: 26
77008698 CATGAAATTC
77008708 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
77008734 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
77008760 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
77008786 TTATCATTG-AACATTTACCTAACCTA
1 TTATCA-TGAAACATTTACCTAACCCA
77008812 TTATCA
1 TTATCA
77008818 ATTTGTATCA
Statistics
Matches: 81, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
26 79 0.98
27 2 0.02
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:77013241 original size:37 final size:37
Alignment explanation
Indices: 77013190--77013265 Score: 95
Period size: 37 Copynumber: 2.1 Consensus size: 37
77013180 ATGATCGATG
*
77013190 TTGTTGTGATTAGCCAAATG-TAT-TGGCTTATAATGAT
1 TTGTTGTGATTAGCC--ATGAGATGTGGCTTATAATGAT
77013227 TTGTTGT-ATGTAGCCATGAGATGTGGCTTATAATGAT
1 TTGTTGTGAT-TAGCCATGAGATGTGGCTTATAATGAT
77013264 TT
1 TT
77013266 TGGCTTGTAA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
35 3 0.09
36 4 0.11
37 28 0.80
ACGTcount: A:0.25, C:0.08, G:0.24, T:0.43
Consensus pattern (37 bp):
TTGTTGTGATTAGCCATGAGATGTGGCTTATAATGAT
Found at i:77014231 original size:40 final size:41
Alignment explanation
Indices: 77014184--77014280 Score: 135
Period size: 40 Copynumber: 2.4 Consensus size: 41
77014174 ACACACCAAT
*
77014184 TTGTGGACAAGCCACCAAT-ATTGCAGATAAACCACCAGTA
1 TTGTGGACAAGCCACCAATAATTGCAGACAAACCACCAGTA
** *
77014224 TTGTGGACAAGCCACC-ATAATTGCAGACAAGGCACTAGTA
1 TTGTGGACAAGCCACCAATAATTGCAGACAAACCACCAGTA
*
77014264 TTGTGGACAAGTCACCA
1 TTGTGGACAAGCCACCA
77014281 GAATTGTAGA
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
39 2 0.04
40 48 0.96
ACGTcount: A:0.35, C:0.24, G:0.21, T:0.21
Consensus pattern (41 bp):
TTGTGGACAAGCCACCAATAATTGCAGACAAACCACCAGTA
Found at i:77014238 original size:20 final size:20
Alignment explanation
Indices: 77014184--77014287 Score: 93
Period size: 20 Copynumber: 5.2 Consensus size: 20
77014174 ACACACCAAT
*
77014184 TTGTGGACAAGCCACCAATA
1 TTGTGGACAAGCCACCAGTA
** * *
77014204 TTGCAGATAAACCACCAGTA
1 TTGTGGACAAGCCACCAGTA
77014224 TTGTGGACAAGCCACCA-TAA
1 TTGTGGACAAGCCACCAGT-A
** * *
77014244 TTGCAGACAAGGCACTAGTA
1 TTGTGGACAAGCCACCAGTA
* *
77014264 TTGTGGACAAGTCACCAGAA
1 TTGTGGACAAGCCACCAGTA
77014284 TTGT
1 TTGT
77014288 AGAAAAGTTG
Statistics
Matches: 64, Mismatches: 18, Indels: 4
0.74 0.21 0.05
Matches are distributed among these distances:
19 1 0.02
20 62 0.97
21 1 0.02
ACGTcount: A:0.35, C:0.22, G:0.21, T:0.22
Consensus pattern (20 bp):
TTGTGGACAAGCCACCAGTA
Found at i:77014304 original size:40 final size:39
Alignment explanation
Indices: 77014184--77014318 Score: 132
Period size: 40 Copynumber: 3.4 Consensus size: 39
77014174 ACACACCAAT
*
77014184 TTGTGGACAAGCCACCA-ATATTGCAGATAAA-CCACCAGTA
1 TTGTGGACAAGCCACCAGA-ATTGCAGA-AAAGGCA-CAGTA
* *
77014224 TTGTGGACAAGCCACCATAATTGCAGACAAGGCACTAGTA
1 TTGTGGACAAGCCACCAGAATTGCAGAAAAGGCAC-AGTA
* * *
77014264 TTGTGGACAAGTCACCAGAATTGTAGAAAAGTTG-TCAGTA
1 TTGTGGACAAGCCACCAGAATTGCAGAAAAG--GCACAGTA
*
77014304 TTATGGACAAGCCAC
1 TTGTGGACAAGCCAC
77014319 AAGTACTACA
Statistics
Matches: 81, Mismatches: 9, Indels: 10
0.81 0.09 0.10
Matches are distributed among these distances:
39 3 0.04
40 75 0.93
41 2 0.02
42 1 0.01
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.22
Consensus pattern (39 bp):
TTGTGGACAAGCCACCAGAATTGCAGAAAAGGCACAGTA
Found at i:77014351 original size:40 final size:40
Alignment explanation
Indices: 77014307--77014383 Score: 109
Period size: 40 Copynumber: 1.9 Consensus size: 40
77014297 GTCAGTATTA
77014307 TGGACAAGCCACAAGTACTACAAACAAGCAGCCAATAATG
1 TGGACAAGCCACAAGTACTACAAACAAGCAGCCAATAATG
* ** * *
77014347 TGGACAAGCCACCAGTGTTACAGACAAGCTGCCAATA
1 TGGACAAGCCACAAGTACTACAAACAAGCAGCCAATA
77014384 CTTCTTTATT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.40, C:0.26, G:0.19, T:0.14
Consensus pattern (40 bp):
TGGACAAGCCACAAGTACTACAAACAAGCAGCCAATAATG
Found at i:77016096 original size:24 final size:24
Alignment explanation
Indices: 77016017--77016106 Score: 99
Period size: 24 Copynumber: 3.8 Consensus size: 24
77016007 TATAGATATA
**
77016017 TCAACTCGTAAGAGCTTATTGTTT
1 TCAACTCGTTGGAGCTTATTGTTT
*
77016041 TCAACTCATTGGAGCTTATTGTTT
1 TCAACTCGTTGGAGCTTATTGTTT
* * *
77016065 TTAGCTCGTTGGAGCTTATTCTTT
1 TCAACTCGTTGGAGCTTATTGTTT
* **
77016089 TCATCTCGTCAGAGCTTA
1 TCAACTCGTTGGAGCTTA
77016107 CCGTTTCAAC
Statistics
Matches: 55, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 55 1.00
ACGTcount: A:0.20, C:0.19, G:0.18, T:0.43
Consensus pattern (24 bp):
TCAACTCGTTGGAGCTTATTGTTT
Found at i:77018300 original size:43 final size:43
Alignment explanation
Indices: 77018252--77018390 Score: 144
Period size: 43 Copynumber: 3.3 Consensus size: 43
77018242 GTGTGATTTT
*
77018252 GTGTAAGACCATGTTTGGGACATTGGCATCGATATGAGATTAC
1 GTGTAAGACCATGTATGGGACATTGGCATCGATATGAGATTAC
** *
77018295 GTGTAAGACCATGTCCGGGACATTGGCATCGTATATGA-TTTA-
1 GTGTAAGACCATGTATGGGACATTGGCATCG-ATATGAGATTAC
** *
77018337 -TGTAAGA-CATTGTATGGGACAGAGGCATCGATATGTGA-TAGC
1 GTGTAAGACCA-TGTATGGGACATTGGCATCGATATGAGATTA-C
*
77018379 ATGTAAGACCAT
1 GTGTAAGACCAT
77018391 ATCCGGGATA
Statistics
Matches: 80, Mismatches: 9, Indels: 14
0.78 0.09 0.14
Matches are distributed among these distances:
40 9 0.11
41 23 0.29
43 40 0.50
44 8 0.10
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.29
Consensus pattern (43 bp):
GTGTAAGACCATGTATGGGACATTGGCATCGATATGAGATTAC
Found at i:77018396 original size:84 final size:83
Alignment explanation
Indices: 77018253--77018406 Score: 204
Period size: 84 Copynumber: 1.8 Consensus size: 83
77018243 TGTGATTTTG
* ** * *
77018253 TGTAAGACCATGTTTGGGACATTGGCATCGATATGAGATTACGTGTAAGACCATGTCCGGGACAT
1 TGTAAGACCATGTATGGGACAGAGGCATCGATATGAGATTACATGTAAGACCATATCCGGGACA-
77018318 TGGCATCGTATATGATTTA
65 TGGCATCGTATATGATTTA
* *
77018337 TGTAAGA-CATTGTATGGGACAGAGGCATCGATATGTGA-TAGCATGTAAGACCATATCCGGGAT
1 TGTAAGACCA-TGTATGGGACAGAGGCATCGATATGAGATTA-CATGTAAGACCATATCCGGGAC
77018400 ATGGCAT
64 ATGGCAT
77018407 TGTACGAGCT
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
83 10 0.16
84 51 0.84
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (83 bp):
TGTAAGACCATGTATGGGACAGAGGCATCGATATGAGATTACATGTAAGACCATATCCGGGACAT
GGCATCGTATATGATTTA
Found at i:77020238 original size:30 final size:31
Alignment explanation
Indices: 77020198--77020260 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 31
77020188 CCTTTTCATA
77020198 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
77020229 TTTCA-ATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
77020259 TT
1 TT
77020261 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 25 0.83
31 5 0.17
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.37
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:77020523 original size:23 final size:23
Alignment explanation
Indices: 77020469--77020632 Score: 251
Period size: 23 Copynumber: 7.1 Consensus size: 23
77020459 GCCTAGCCTT
*
77020469 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
77020492 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
77020516 TTTAATAACT-GGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
77020538 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
* *
77020562 TTTTATAACTGGGGCATAAG-CT
1 TTTAATAACTGGGGCATAAGCCC
*
77020584 TTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
77020607 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
77020630 TTT
1 TTT
77020633 TTCACTTCCT
Statistics
Matches: 130, Mismatches: 7, Indels: 7
0.90 0.05 0.05
Matches are distributed among these distances:
22 32 0.25
23 64 0.49
24 34 0.26
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:77020539 original size:46 final size:47
Alignment explanation
Indices: 77020469--77020633 Score: 282
Period size: 45 Copynumber: 3.6 Consensus size: 47
77020459 GCCTAGCCTT
* *
77020469 TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
77020516 TTTAATAACT-GGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
*
77020562 TTTTATAACTGGGGCATAAG--CTTTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
77020607 TTTAATAACTGGGGCATAAGCCCTTTT
1 TTTAATAACTGGGGCATAAGCCCTTTT
77020634 TCACTTCCTC
Statistics
Matches: 111, Mismatches: 4, Indels: 6
0.92 0.03 0.05
Matches are distributed among these distances:
45 44 0.40
46 43 0.39
47 24 0.22
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
Found at i:77020706 original size:20 final size:20
Alignment explanation
Indices: 77020681--77020747 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
77020671 TTATGATTAC
77020681 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
77020701 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
77020721 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
77020741 ACCATGT
1 ATCATGT
77020748 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:77020712 original size:11 final size:11
Alignment explanation
Indices: 77020681--77020736 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
77020671 TTATGATTAC
77020681 ATCATGTGCAT
1 ATCATGTGCAT
*
77020692 ATCA--TACAT
1 ATCATGTGCAT
77020701 ATCATGTGCAT
1 ATCATGTGCAT
*
77020712 ATCA--TACAT
1 ATCATGTGCAT
*
77020721 GTCATGTGCAT
1 ATCATGTGCAT
77020732 ATCAT
1 ATCAT
77020737 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:77020816 original size:25 final size:25
Alignment explanation
Indices: 77020784--77020831 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
77020774 ATACATAAAC
* * *
77020784 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
77020809 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
77020832 CATGTTAAGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:77027083 original size:30 final size:31
Alignment explanation
Indices: 77027043--77027105 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 31
77027033 CCTTTTCATA
77027043 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
77027074 TTTCA-ATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
77027104 TT
1 TT
77027106 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 25 0.83
31 5 0.17
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.37
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:77027370 original size:23 final size:23
Alignment explanation
Indices: 77027316--77027503 Score: 281
Period size: 23 Copynumber: 8.1 Consensus size: 23
77027306 CCTAGCCTCT
*
77027316 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
77027339 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
77027363 TTTAATAACT-GGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
77027385 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
*
77027409 TTTTATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
77027432 TTTTATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
77027455 TTTTGATAACT-GGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
*
77027478 TTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
77027501 TTT
1 TTT
77027504 TTCACTTCCT
Statistics
Matches: 156, Mismatches: 4, Indels: 9
0.92 0.02 0.05
Matches are distributed among these distances:
22 22 0.14
23 91 0.58
24 43 0.28
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:77027441 original size:69 final size:70
Alignment explanation
Indices: 77027309--77027504 Score: 324
Period size: 69 Copynumber: 2.8 Consensus size: 70
77027299 CTGGAGGCCT
* * *
77027309 AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACT-
1 AGCC-CTTTTGATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTATAACTG
77027373 GGGCATA
64 GGGCATA
77027380 AGCCCTTTTGATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCCCTTTTATAACTGGG
1 AGCCCTTTTGATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCCCTTTTATAACTGGG
77027445 GCATA
66 GCATA
*
77027450 AGCCCTTTTGATAACT-GGGCATAAGCCCTTTGATAACTGGGGCATAAGCCCTTTT
1 AGCCCTTTTGATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCCCTTTT
77027505 TCACTTCCTC
Statistics
Matches: 120, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
69 66 0.55
70 50 0.42
71 4 0.03
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (70 bp):
AGCCCTTTTGATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCCCTTTTATAACTGGG
GCATA
Found at i:77027504 original size:46 final size:48
Alignment explanation
Indices: 77027309--77027504 Score: 314
Period size: 46 Copynumber: 4.2 Consensus size: 48
77027299 CTGGAGGCCT
* *
77027309 AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATA
1 AGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
77027358 AGCCC-TTTAATAACT-GGGCATAAGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
77027404 AGCCCTTTT-ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
*
77027450 AGCCCTTTTGATAACT-GGGCATAAGCCC-TTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
77027496 AGCCCTTTT
1 AGCCCTTTT
77027505 TCACTTCCTC
Statistics
Matches: 141, Mismatches: 2, Indels: 11
0.92 0.01 0.07
Matches are distributed among these distances:
45 3 0.02
46 98 0.70
47 35 0.25
48 1 0.01
49 4 0.03
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (48 bp):
AGCCCTTTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
Found at i:77027576 original size:20 final size:20
Alignment explanation
Indices: 77027551--77027617 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
77027541 TTATGATTAC
77027551 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
77027571 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
77027591 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
77027611 ACCATGT
1 ATCATGT
77027618 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:77027582 original size:11 final size:11
Alignment explanation
Indices: 77027551--77027606 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
77027541 TTATGATTAC
77027551 ATCATGTGCAT
1 ATCATGTGCAT
*
77027562 ATCA--TACAT
1 ATCATGTGCAT
77027571 ATCATGTGCAT
1 ATCATGTGCAT
*
77027582 ATCA--TACAT
1 ATCATGTGCAT
*
77027591 GTCATGTGCAT
1 ATCATGTGCAT
77027602 ATCAT
1 ATCAT
77027607 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:77027686 original size:25 final size:25
Alignment explanation
Indices: 77027654--77027701 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
77027644 ATACATAAAC
* * *
77027654 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
77027679 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
77027702 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:77033971 original size:31 final size:31
Alignment explanation
Indices: 77033930--77033993 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
77033920 CCTTTTCATA
*
77033930 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
77033961 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
77033992 TT
1 TT
77033994 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:77034236 original size:24 final size:24
Alignment explanation
Indices: 77034200--77034351 Score: 245
Period size: 24 Copynumber: 6.4 Consensus size: 24
77034190 CTGGAGGCCT
*
77034200 AGCCTCTTTTAATAACTGGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
77034225 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
77034249 AGCCC-TTTAATAACTAGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
77034272 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
77034296 AGCCCTTTTTATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
77034320 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
77034343 AGCCCTTTT
1 AGCCCTTTT
77034352 TCACTTCCTC
Statistics
Matches: 119, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
23 44 0.37
24 71 0.60
25 4 0.03
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:77034286 original size:71 final size:71
Alignment explanation
Indices: 77034200--77034351 Score: 259
Period size: 71 Copynumber: 2.1 Consensus size: 71
77034190 CTGGAGGCCT
77034200 AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTA
1 AGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTA
77034265 GGGCATA
65 GGGCATA
* * * *
77034272 AGCCCTTTTGATAACTGGGGCATAAGCCCTTTTTATAACTGGGGCATAAGCCCTTTAATAACTGG
1 AGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTAG
77034337 GGCATA
66 GGCATA
77034343 AGCCCTTTT
1 AGCCCTTTT
77034352 TCACTTCCTC
Statistics
Matches: 76, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
71 72 0.95
72 4 0.05
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (71 bp):
AGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTAG
GGCATA
Found at i:77034352 original size:47 final size:48
Alignment explanation
Indices: 77034200--77034351 Score: 245
Period size: 47 Copynumber: 3.2 Consensus size: 48
77034190 CTGGAGGCCT
*
77034200 AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATA
1 AGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATA
* *
77034249 AGCCC-TTTAATAACTAGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATA
*
77034296 AGCCCTTTTTATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATA
77034343 AGCCCTTTT
1 AGCCCTTTT
77034352 TCACTTCCTC
Statistics
Matches: 96, Mismatches: 6, Indels: 4
0.91 0.06 0.04
Matches are distributed among these distances:
47 70 0.73
48 22 0.23
49 4 0.04
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (48 bp):
AGCCCTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATA
Found at i:77034425 original size:20 final size:20
Alignment explanation
Indices: 77034400--77034466 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
77034390 TTATGATTAC
77034400 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
77034420 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
77034440 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
77034460 ACCATGT
1 ATCATGT
77034467 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:77034431 original size:11 final size:11
Alignment explanation
Indices: 77034400--77034455 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
77034390 TTATGATTAC
77034400 ATCATGTGCAT
1 ATCATGTGCAT
*
77034411 ATCA--TACAT
1 ATCATGTGCAT
77034420 ATCATGTGCAT
1 ATCATGTGCAT
*
77034431 ATCA--TACAT
1 ATCATGTGCAT
*
77034440 GTCATGTGCAT
1 ATCATGTGCAT
77034451 ATCAT
1 ATCAT
77034456 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:77034535 original size:25 final size:25
Alignment explanation
Indices: 77034503--77034550 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
77034493 ATACATAAAC
* *
77034503 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATGGTCATTTTTA
77034528 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGGGCAAAATGGTCATTTT
77034551 CATGTTATAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATGGTCATTTTTA
Found at i:77036674 original size:124 final size:122
Alignment explanation
Indices: 77036454--77036675 Score: 284
Period size: 124 Copynumber: 1.8 Consensus size: 122
77036444 GAATTATGTG
* * * * *
77036454 GAATGAAATATGGATGTATTGATTATTGATTTATGTGTGTATGAGTATTCGAATAATGCCCGGGC
1 GAATGAAATATGGATGTAATGATTATTGATGTATGTGTGCATGAGAATTCGAATAATACCCGGGC
* * * **
77036519 TAAGTCCCGAAGGCGATTATGCTAGTGATTATAATTGTGTTTGAGCCTTAGTAACGA
66 TAAGCCCCGAAGACAATTATGCTAGAAATTATAATTGTGTTTGAGCCTTAGTAACGA
* * *
77036576 GAATGAAATATGTATGTCCAATGATTATTGATGTATGTGTGCATGAGAAATT-GAATGATATCCG
1 GAATGAAATATGGATGT--AATGATTATTGATGTATGTGTGCATGAG-AATTCGAATAATACCCG
*
77036640 GGCTAAGCCCCGAAGACAATTATGCTGGAAATTATA
63 GGCTAAGCCCCGAAGACAATTATGCTAGAAATTATA
77036676 TCCGGGTTAA
Statistics
Matches: 83, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
122 16 0.19
124 64 0.77
125 3 0.04
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (122 bp):
GAATGAAATATGGATGTAATGATTATTGATGTATGTGTGCATGAGAATTCGAATAATACCCGGGC
TAAGCCCCGAAGACAATTATGCTAGAAATTATAATTGTGTTTGAGCCTTAGTAACGA
Found at i:77036719 original size:40 final size:40
Alignment explanation
Indices: 77036634--77036784 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
77036624 AATTGAATGA
* * * *
77036634 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
77036674 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
77036715 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
77036754 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
77036785 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 80 0.87
41 3 0.03
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:77036798 original size:40 final size:40
Alignment explanation
Indices: 77036671--77036800 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
77036661 ATGCTGGAAA
* * *
77036671 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * ***
77036711 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGACA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
77036751 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
77036791 TTATATCCGG
1 TTATATCCGG
77036801 TTATATTCCG
Statistics
Matches: 72, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:77036799 original size:80 final size:80
Alignment explanation
Indices: 77036633--77036800 Score: 207
Period size: 80 Copynumber: 2.1 Consensus size: 80
77036623 AAATTGAATG
* *
77036633 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
77036698 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * * *
77036713 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
77036776 CATTTGTGC-ACGTGGTT
64 CAATTGTGCTA-GTGGCT
77036793 ATATCCGG
1 ATATCCGG
77036801 TTATATTCCG
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
79 5 0.07
80 70 0.93
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:77046772 original size:23 final size:23
Alignment explanation
Indices: 77046711--77046824 Score: 86
Period size: 23 Copynumber: 4.9 Consensus size: 23
77046701 TACCGATATA
* *
77046711 TCAGTTCATAAGAGCTTACTATTT
1 TCAGCTCATAAGAGCTTACT-GTT
* * **
77046735 TTAGCTCGTTGGAGCTTACTGTT
1 TCAGCTCATAAGAGCTTACTGTT
*
77046758 TCAGCTCATAAGAGCTTATTGTTT
1 TCAGCTCATAAGAGCTTACTG-TT
* ** * *
77046782 TCAACTTGTTAGAGCTTACTGTG
1 TCAGCTCATAAGAGCTTACTGTT
77046805 TCAGCTCA-ATAGAGCTTACT
1 TCAGCTCATA-AGAGCTTACT
77046825 ATCCATCAGC
Statistics
Matches: 67, Mismatches: 21, Indels: 5
0.72 0.23 0.05
Matches are distributed among these distances:
23 34 0.51
24 33 0.49
ACGTcount: A:0.24, C:0.18, G:0.18, T:0.39
Consensus pattern (23 bp):
TCAGCTCATAAGAGCTTACTGTT
Found at i:77046797 original size:47 final size:47
Alignment explanation
Indices: 77046711--77046826 Score: 144
Period size: 47 Copynumber: 2.5 Consensus size: 47
77046701 TACCGATATA
* * * * *
77046711 TCAGTTCATAAGAGCTTACTATTTTTAGCTCGTTGGAGCTTACTGTT
1 TCAGCTCATAAGAGCTTACTATTTTCAACTCGTTAGAGCTTACTGTG
* * *
77046758 TCAGCTCATAAGAGCTTATTGTTTTCAACTTGTTAGAGCTTACTGTG
1 TCAGCTCATAAGAGCTTACTATTTTCAACTCGTTAGAGCTTACTGTG
77046805 TCAGCTCA-ATAGAGCTTACTAT
1 TCAGCTCATA-AGAGCTTACTAT
77046827 CCATCAGCTC
Statistics
Matches: 58, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
46 1 0.02
47 57 0.98
ACGTcount: A:0.24, C:0.18, G:0.18, T:0.40
Consensus pattern (47 bp):
TCAGCTCATAAGAGCTTACTATTTTCAACTCGTTAGAGCTTACTGTG
Done.