Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 245 of 318
Found at i:77047798 original size:32 final size:32
Alignment explanation
Indices: 77047760--77047828 Score: 129
Period size: 32 Copynumber: 2.2 Consensus size: 32
77047750 ATGCTTGGGC
77047760 CGTGTGAGACACATGGTCATGTTACATGGCCA
1 CGTGTGAGACACATGGTCATGTTACATGGCCA
77047792 CGTGTGAGACACATGGTCATGTTACATGGCCA
1 CGTGTGAGACACATGGTCATGTTACATGGCCA
*
77047824 TGTGT
1 CGTGT
77047829 CCCCTGGTGT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.28
Consensus pattern (32 bp):
CGTGTGAGACACATGGTCATGTTACATGGCCA
Found at i:77051226 original size:46 final size:46
Alignment explanation
Indices: 77051159--77051287 Score: 222
Period size: 46 Copynumber: 2.8 Consensus size: 46
77051149 TGTAACCCGC
* * *
77051159 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
77051205 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
77051251 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
77051288 TGCCCAAATA
Statistics
Matches: 78, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 78 1.00
ACGTcount: A:0.30, C:0.29, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:77053709 original size:30 final size:30
Alignment explanation
Indices: 77053665--77053733 Score: 97
Period size: 30 Copynumber: 2.3 Consensus size: 30
77053655 CAAAGATAAC
*
77053665 AAGAAAACC-GAATAAAGAA-ATCCAAGATA
1 AAGAAACCCAGAATAAA-AAGATCCAAGATA
*
77053694 GAGAAACCCAGAATAAAAAGATCCAAGATA
1 AAGAAACCCAGAATAAAAAGATCCAAGATA
77053724 AAGAAACCCA
1 AAGAAACCCA
77053734 AGATACGATA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
29 9 0.26
30 26 0.74
ACGTcount: A:0.59, C:0.17, G:0.14, T:0.09
Consensus pattern (30 bp):
AAGAAACCCAGAATAAAAAGATCCAAGATA
Found at i:77053734 original size:15 final size:15
Alignment explanation
Indices: 77053676--77053738 Score: 67
Period size: 15 Copynumber: 4.2 Consensus size: 15
77053666 AGAAAACCGA
*
77053676 ATAAAGAAATCCAAG
1 ATAAAGAAACCCAAG
*
77053691 ATAGAGAAACCC-AG
1 ATAAAGAAACCCAAG
*
77053705 AATAAA-AAGATCCAAG
1 -ATAAAGAA-ACCCAAG
77053721 ATAAAGAAACCCAAG
1 ATAAAGAAACCCAAG
77053736 ATA
1 ATA
77053739 CGATACTATG
Statistics
Matches: 39, Mismatches: 5, Indels: 8
0.75 0.10 0.15
Matches are distributed among these distances:
14 4 0.10
15 31 0.79
16 4 0.10
ACGTcount: A:0.59, C:0.16, G:0.14, T:0.11
Consensus pattern (15 bp):
ATAAAGAAACCCAAG
Found at i:77056759 original size:46 final size:46
Alignment explanation
Indices: 77056692--77056820 Score: 213
Period size: 46 Copynumber: 2.8 Consensus size: 46
77056682 TGTAACCCGC
* * *
77056692 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
77056738 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
77056784 CCATAAGTGAACTCGGACTCAACTCAGCGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
77056821 TGCCCAAATA
Statistics
Matches: 77, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 77 1.00
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:77061877 original size:47 final size:47
Alignment explanation
Indices: 77061824--77062215 Score: 478
Period size: 47 Copynumber: 8.1 Consensus size: 47
77061814 TTAGGATTTT
* *
77061824 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
** *
77061871 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCTGAATGGCCA
1 ATGTGATGAATGTGAA--C--ATGCATATGTGTGATAAGGCCGAATGGCCA
* * *
77061922 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAAAGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
** * *
77061969 ATGTGATGAATGTGAACCTGTATATATATATGCGTGATAAGGCCAAATGGCCA
1 ATGTGATGAATGTGAA-C-----ATGCATATGTGTGATAAGGCCGAATGGCCA
*
77062022 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
** *
77062069 ATGTGATGAATGTGAACATGTGTATGTGTGATAACGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* *
77062116 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* * * * * *
77062163 ATGTGATGAATGTGAACATGAATATATGTGGTAAAGCCAAATGGCTA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
77062210 ATGTGA
1 ATGTGA
77062216 GATATGTATG
Statistics
Matches: 299, Mismatches: 36, Indels: 20
0.84 0.10 0.06
Matches are distributed among these distances:
47 214 0.72
48 1 0.00
49 2 0.01
51 41 0.14
52 1 0.00
53 40 0.13
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
Found at i:77062060 original size:100 final size:97
Alignment explanation
Indices: 77061824--77062215 Score: 553
Period size: 94 Copynumber: 4.1 Consensus size: 97
77061814 TTAGGATTTT
*
77061824 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
* **
77061889 CGTATATATATGTGTGATAAGGCTGAATGGCCA
66 TG-ATATATATGTGTGATAAGGCCAAATGGCCA
* *
77061922 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAAAGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
*
77061987 TGTATATATATATGCGTGATAAGGCCAAATGGCCA
66 TG---ATATATATGTGTGATAAGGCCAAATGGCCA
77062022 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-C
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
* * * *
77062086 --ATGTGTATGTGTGATAACGCCGAATGGCCA
66 TGATATATATGTGTGATAAGGCCAAATGGCCA
* * * *
77062116 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
* *
77062181 TGA-ATATATGTG-G-TAAAGCCAAATGGCTA
66 TGATATATATGTGTGATAAGGCCAAATGGCCA
77062210 ATGTGA
1 ATGTGA
77062216 GATATGTATG
Statistics
Matches: 268, Mismatches: 21, Indels: 14
0.88 0.07 0.05
Matches are distributed among these distances:
94 104 0.39
95 1 0.00
96 7 0.03
97 1 0.00
98 65 0.24
99 1 0.00
100 89 0.33
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.27
Consensus pattern (97 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
TGATATATATGTGTGATAAGGCCAAATGGCCA
Found at i:77062482 original size:37 final size:37
Alignment explanation
Indices: 77062374--77062482 Score: 164
Period size: 37 Copynumber: 2.9 Consensus size: 37
77062364 GGAAATATAT
*
77062374 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
**
77062411 TCCGGGTAAGACCCGATGACTACGTGTAAAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * *
77062448 TCCGGGTAAGACCCGATAACTTCATGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
77062483 CGTCTGAGCT
Statistics
Matches: 64, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:77064237 original size:38 final size:38
Alignment explanation
Indices: 77064186--77064305 Score: 118
Period size: 38 Copynumber: 3.1 Consensus size: 38
77064176 TTTAAGCTTA
*
77064186 GATATAATACCAGCACT-AGGCCTGCGAGATTTAACCCG
1 GATATAATACCAGCA-TGAAGCCTGCGAGATTTAACCCG
* * *
77064224 GATATAATACCAGCATGAAGCTTGCGGGATTTAACCTG
1 GATATAATACCAGCATGAAGCCTGCGAGATTTAACCCG
* * * *
77064262 GATATATTTCCAGCAT-ATAGCCTGCGGGTCTTTAAGCCCG
1 GATATAATACCAGCATGA-AGCCTGCGAG-ATTTAA-CCCG
77064302 GATA
1 GATA
77064306 CACATCAAAT
Statistics
Matches: 69, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
37 2 0.03
38 55 0.80
39 5 0.07
40 7 0.10
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.26
Consensus pattern (38 bp):
GATATAATACCAGCATGAAGCCTGCGAGATTTAACCCG
Found at i:77066006 original size:40 final size:40
Alignment explanation
Indices: 77065962--77066189 Score: 345
Period size: 40 Copynumber: 5.7 Consensus size: 40
77065952 GCTACTTGCT
77065962 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTAGCA
*
77066002 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTAGCA
* *
77066042 CTAATGCCTTCGGAACTTAGCCCGGTTATAGTAACTCA-CA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACT-AGCA
* *
77066082 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTAGCA
* * *
77066122 CAAATGCCTTCAGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTAGCA
77066161 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
77066190 CATCCGAATA
Statistics
Matches: 169, Mismatches: 14, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
38 1 0.01
39 33 0.20
40 134 0.79
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTAGCA
Found at i:77073434 original size:40 final size:40
Alignment explanation
Indices: 77073390--77073503 Score: 133
Period size: 38 Copynumber: 2.9 Consensus size: 40
77073380 GAATCTAGTC
* *
77073390 ACCAGCACAAAACCTGCGGGACTTTAAGCTCAGATATAAT
1 ACCAGCACAAAGCCTGCGGGACTTTAAGCCCAGATATAAT
* * * *
77073430 ACCAGCACTAGGCCTGCGGGA-TTTGA-CCCGGATATAAT
1 ACCAGCACAAAGCCTGCGGGACTTTAAGCCCAGATATAAT
* * *
77073468 ACCAGCACGAAGCCTACGGGTCTTTAAGCCCAGATA
1 ACCAGCACAAAGCCTGCGGGACTTTAAGCCCAGATA
77073504 CACATCAAAT
Statistics
Matches: 60, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
38 27 0.45
39 8 0.13
40 25 0.42
ACGTcount: A:0.32, C:0.27, G:0.22, T:0.19
Consensus pattern (40 bp):
ACCAGCACAAAGCCTGCGGGACTTTAAGCCCAGATATAAT
Found at i:77082094 original size:23 final size:23
Alignment explanation
Indices: 77082068--77082138 Score: 62
Period size: 23 Copynumber: 3.2 Consensus size: 23
77082058 AGAATATGTA
77082068 ATTGGTGAGAGAATGAATTCATG
1 ATTGGTGAGAGAATGAATTCATG
* *
77082091 ATTGTTCTA-A-AA-GAA-T-ATG
1 ATTGGT-GAGAGAATGAATTCATG
77082110 TAATTGGTGAGAGAATGAATTCATG
1 --ATTGGTGAGAGAATGAATTCATG
77082135 ATTG
1 ATTG
77082139 TTCTTGGATT
Statistics
Matches: 36, Mismatches: 4, Indels: 16
0.64 0.07 0.29
Matches are distributed among these distances:
19 3 0.08
20 2 0.06
21 9 0.25
22 4 0.11
23 13 0.36
24 2 0.06
25 3 0.08
ACGTcount: A:0.37, C:0.04, G:0.25, T:0.34
Consensus pattern (23 bp):
ATTGGTGAGAGAATGAATTCATG
Found at i:77082120 original size:44 final size:44
Alignment explanation
Indices: 77082057--77082142 Score: 172
Period size: 44 Copynumber: 2.0 Consensus size: 44
77082047 TCTTTTTTGC
77082057 AAGAATATGTAATTGGTGAGAGAATGAATTCATGATTGTTCTAA
1 AAGAATATGTAATTGGTGAGAGAATGAATTCATGATTGTTCTAA
77082101 AAGAATATGTAATTGGTGAGAGAATGAATTCATGATTGTTCT
1 AAGAATATGTAATTGGTGAGAGAATGAATTCATGATTGTTCT
77082143 TGGATTTGAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.37, C:0.05, G:0.23, T:0.35
Consensus pattern (44 bp):
AAGAATATGTAATTGGTGAGAGAATGAATTCATGATTGTTCTAA
Found at i:77084028 original size:5 final size:5
Alignment explanation
Indices: 77084018--77084076 Score: 59
Period size: 5 Copynumber: 11.8 Consensus size: 5
77084008 TACCTAGGTA
* * *
77084018 TTAAT TTAAT TTAGT TT-TT TATAAT TTAAT TTAA- TTATT TTAAT TTAATT
1 TTAAT TTAAT TTAAT TTAAT T-TAAT TTAAT TTAAT TTAAT TTAAT TTAA-T
77084068 TTAAT TTAA
1 TTAAT TTAA
77084077 AAAGGTCATG
Statistics
Matches: 45, Mismatches: 5, Indels: 8
0.78 0.09 0.14
Matches are distributed among these distances:
4 5 0.11
5 33 0.73
6 7 0.16
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.63
Consensus pattern (5 bp):
TTAAT
Found at i:77084044 original size:20 final size:19
Alignment explanation
Indices: 77084018--77084073 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 19
77084008 TACCTAGGTA
* *
77084018 TTAATTTAATTTAGTTTTT
1 TTAATTTAATTTAATTATT
77084037 TATAATTTAATTTAATTATT
1 T-TAATTTAATTTAATTATT
77084057 TTAATTTAATTTTAATT
1 TTAATTTAA-TTTAATT
77084074 TAAAAAGGTC
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
19 9 0.27
20 24 0.73
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (19 bp):
TTAATTTAATTTAATTATT
Found at i:77087183 original size:21 final size:20
Alignment explanation
Indices: 77087154--77087194 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
77087144 AAGATATTAA
* *
77087154 AAAATATTTTTATACTTTTT
1 AAAATATTTTAATAATTTTT
77087174 AAAATAATTTTAATAATTTTT
1 AAAAT-ATTTTAATAATTTTT
77087195 TATTTTTTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.56
Consensus pattern (20 bp):
AAAATATTTTAATAATTTTT
Found at i:77088623 original size:17 final size:18
Alignment explanation
Indices: 77088585--77088623 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
77088575 AGGTTTGAAA
*
77088585 ATTTTAATTAATTAATTT
1 ATTTTAATTAATAAATTT
77088603 -TTTTAATTAA-AAATTT
1 ATTTTAATTAATAAATTT
77088619 ATTTT
1 ATTTT
77088624 CATCCCATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
16 5 0.26
17 14 0.74
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (18 bp):
ATTTTAATTAATAAATTT
Found at i:77092115 original size:11 final size:12
Alignment explanation
Indices: 77092099--77092127 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
77092089 TATGTTCCCA
77092099 CTTTTAGTA-AT
1 CTTTTAGTATAT
77092110 CTTTTAGTATAT
1 CTTTTAGTATAT
77092122 CTTTTA
1 CTTTTA
77092128 TTTTCTTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 9 0.53
12 8 0.47
ACGTcount: A:0.24, C:0.10, G:0.07, T:0.59
Consensus pattern (12 bp):
CTTTTAGTATAT
Found at i:77098819 original size:47 final size:47
Alignment explanation
Indices: 77098642--77098828 Score: 284
Period size: 48 Copynumber: 3.9 Consensus size: 47
77098632 TAGAGTTATG
* * *
77098642 TGTGGTCCTATGTAAGACCATGTCTGGGACATGGCATTGACATTGATA
1 TGTGATCC-ATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
* *
77098690 TGTGATCTCATGTAATACCATGTCTGGGACATTGCATTGGCATCGATA
1 TGTGATC-CATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
77098738 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
1 TGTGAT-CCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
* *
77098786 TGTGATCCATGTAAGACCATATCTGGGATATGGCATTGGCATC
1 TGTGATCCATGTAAGACCATGTCTGGGACATGGCATTGGCATC
77098829 TTACTATGTG
Statistics
Matches: 128, Mismatches: 9, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
47 35 0.27
48 91 0.71
49 2 0.02
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (47 bp):
TGTGATCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
Found at i:77112237 original size:37 final size:37
Alignment explanation
Indices: 77112146--77112248 Score: 129
Period size: 38 Copynumber: 2.7 Consensus size: 37
77112136 GGAAATTAAA
* *
77112146 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGCTACAT
1 CCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGCTA-AT
*
77112185 CC-GGCTAAGACCCGAAGGCATTCGTGCGAGTTCT-AT
1 CCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGCTAAT
77112221 CCGGGCTAAGACCCGAAGGCATTTGTGC
1 CCGGGCTAAGACCCGAAGGCA-TTGTGC
77112249 AAATCGTGAT
Statistics
Matches: 58, Mismatches: 3, Indels: 8
0.84 0.04 0.12
Matches are distributed among these distances:
36 4 0.07
37 25 0.43
38 27 0.47
39 2 0.03
ACGTcount: A:0.23, C:0.26, G:0.29, T:0.21
Consensus pattern (37 bp):
CCGGGCTAAGACCCGAAGGCATTGTGCGAGTGCTAAT
Found at i:77120317 original size:40 final size:39
Alignment explanation
Indices: 77120152--77120335 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
77120142 AAATTGAATG
* * *
77120152 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
77120192 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
77120232 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
77120272 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
77120311 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
77120336 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:77120360 original size:80 final size:81
Alignment explanation
Indices: 77120192--77120380 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
77120182 GCTGGAAATT
* * * *
77120192 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
77120257 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
77120273 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
77120336 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
77120352 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
77120381 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:77125435 original size:8 final size:8
Alignment explanation
Indices: 77125422--77125451 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
77125412 AGATCGGCAC
77125422 AAGCCGAA
1 AAGCCGAA
77125430 AAGCCGAA
1 AAGCCGAA
*
77125438 ATGCCGAA
1 AAGCCGAA
77125446 AAGCCG
1 AAGCCG
77125452 GTATTTTGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.43, C:0.27, G:0.27, T:0.03
Consensus pattern (8 bp):
AAGCCGAA
Found at i:77125885 original size:27 final size:27
Alignment explanation
Indices: 77125845--77125956 Score: 129
Period size: 27 Copynumber: 4.1 Consensus size: 27
77125835 AGGAAGCGTC
77125845 CTGGTGGC-CATGCCACAAATATCTGAT
1 CTGGTGGCTC-TGCCACAAATATCTGAT
* *
77125872 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAAATATCTGAT
*
77125899 CTGGTGGCTCTGCCACAATTATCTGTAT
1 CTGGTGGCTCTGCCACAAATATCTG-AT
* * * *
77125927 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAAATATCTGAT
77125953 CTGG
1 CTGG
77125957 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
26 5 0.07
27 54 0.72
28 16 0.21
ACGTcount: A:0.18, C:0.25, G:0.22, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAAATATCTGAT
Found at i:77125949 original size:54 final size:54
Alignment explanation
Indices: 77125845--77125965 Score: 165
Period size: 54 Copynumber: 2.2 Consensus size: 54
77125835 AGGAAGCGTC
*
77125845 CTGGTGGCCATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCCATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCTGTT
* *
77125899 CTGGTGGCTC-TGCCACAATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGC-CATGCCACAAATATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
**
77125953 CTGGCAGCCATGC
1 CTGGTGGCCATGC
77125966 TGCAAATTCT
Statistics
Matches: 59, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
53 1 0.02
54 39 0.66
55 19 0.32
ACGTcount: A:0.18, C:0.26, G:0.22, T:0.33
Consensus pattern (54 bp):
CTGGTGGCCATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:77128597 original size:63 final size:63
Alignment explanation
Indices: 77128399--77128610 Score: 189
Period size: 63 Copynumber: 3.4 Consensus size: 63
77128389 TATCCCTGGA
* * * * * * * *
77128399 GAAGGTGTTGATGCAAGGAATGATTGTACATGCTATAGTGCTTGTGTAAAATAAATCGATGCT
1 GAAGGTGTTGATGCAGGGAATGATTGTGCGTGTTGTGGTGCTTGAGTAAAATAAATCAATGCT
* ** * * * *
77128462 GAATGAATTGATGTAGGGAATGCA-TGTGTGTGTTGTGGTACTTGTA-TAAAATAAA-CTATTGC
1 GAAGGTGTTGATGCAGGGAATG-ATTGTGCGTGTTGTGGTGCTTG-AGTAAAATAAATC-AATGC
77128524 T
63 T
** * *
77128525 GAATATGTTGATGCAGGGAACGATTGTGCGTGTTGTGGTGCTTGAGTAAAATAAATCAAAGCT
1 GAAGGTGTTGATGCAGGGAATGATTGTGCGTGTTGTGGTGCTTGAGTAAAATAAATCAATGCT
77128588 GAAGGTGTTGATG-AGGGGAATGA
1 GAAGGTGTTGATGCA-GGGAATGA
77128611 GTTTTCTTGT
Statistics
Matches: 115, Mismatches: 27, Indels: 14
0.74 0.17 0.09
Matches are distributed among these distances:
62 4 0.03
63 109 0.95
64 2 0.02
ACGTcount: A:0.31, C:0.08, G:0.30, T:0.32
Consensus pattern (63 bp):
GAAGGTGTTGATGCAGGGAATGATTGTGCGTGTTGTGGTGCTTGAGTAAAATAAATCAATGCT
Found at i:77129586 original size:15 final size:13
Alignment explanation
Indices: 77129555--77129579 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
77129545 TATAGGGGAT
77129555 ACATGGTCGTGTC
1 ACATGGTCGTGTC
77129568 ACATGGTCGTGT
1 ACATGGTCGTGT
77129580 GTGACATACA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.20, G:0.32, T:0.32
Consensus pattern (13 bp):
ACATGGTCGTGTC
Found at i:77131072 original size:42 final size:42
Alignment explanation
Indices: 77131019--77131128 Score: 141
Period size: 42 Copynumber: 2.6 Consensus size: 42
77131009 ATGGCAATAG
77131019 CCTAGATATGGTCTTACACAAAGTCTCATATCA-ATGCCATAT
1 CCTAGATATGGTCTTACACAAAGTCTCATAT-AGATGCCATAT
* ** * *
77131061 CCTAAATATGGTCTTACATGAGGTCACATATAGATGCCATAT
1 CCTAGATATGGTCTTACACAAAGTCTCATATAGATGCCATAT
* *
77131103 CCCAGATATGGTCTTACACATAGTCT
1 CCTAGATATGGTCTTACACAAAGTCT
77131129 TAGTAACCCT
Statistics
Matches: 55, Mismatches: 12, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
41 1 0.02
42 54 0.98
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.31
Consensus pattern (42 bp):
CCTAGATATGGTCTTACACAAAGTCTCATATAGATGCCATAT
Found at i:77132974 original size:41 final size:40
Alignment explanation
Indices: 77132929--77133079 Score: 140
Period size: 41 Copynumber: 3.7 Consensus size: 40
77132919 ACCAGAGTGT
** * *
77132929 AAACAGGGGCATGTGTGTGCAATTCAAAGGTATCGAAGTAC
1 AAACAGGGGCACATATGTGAAATTCAAAGGTA-CGAAGTAC
* * * * *
77132970 AAACAGGGGCACGTACGTGAAATTTAAGGGTACCGTAGTAC
1 AAACAGGGGCACATATGTGAAATTCAAAGGTA-CGAAGTAC
* * * * *
77133011 AAACAGGGGCACATATGTGTAATTTAAGGGTACTAAATAC
1 AAACAGGGGCACATATGTGAAATTCAAAGGTACGAAGTAC
* *
77133051 AAATAGGGGCATATATGTGAAATTCAAAG
1 AAACAGGGGCACATATGTGAAATTCAAAG
77133080 AATAATTAAG
Statistics
Matches: 91, Mismatches: 19, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
40 29 0.32
41 62 0.68
ACGTcount: A:0.38, C:0.13, G:0.26, T:0.23
Consensus pattern (40 bp):
AAACAGGGGCACATATGTGAAATTCAAAGGTACGAAGTAC
Found at i:77134170 original size:17 final size:17
Alignment explanation
Indices: 77134148--77134183 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
77134138 CCACTGTTCC
*
77134148 CCTAAAGGAATTTTCGT
1 CCTAAAGAAATTTTCGT
77134165 CCTAAAGAAATTTTCGT
1 CCTAAAGAAATTTTCGT
77134182 CC
1 CC
77134184 CTGAAAATCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.31, C:0.22, G:0.14, T:0.33
Consensus pattern (17 bp):
CCTAAAGAAATTTTCGT
Found at i:77136748 original size:21 final size:21
Alignment explanation
Indices: 77136722--77136767 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
77136712 GTTGCTTGCA
77136722 GGGCGTGTGTCTCCTCCACAC
1 GGGCGTGTGTCTCCTCCACAC
* * *
77136743 GGGCGTGTGTGTCCTTCACAT
1 GGGCGTGTGTCTCCTCCACAC
77136764 GGGC
1 GGGC
77136768 ATGTAGACCC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.09, C:0.30, G:0.35, T:0.26
Consensus pattern (21 bp):
GGGCGTGTGTCTCCTCCACAC
Found at i:77140326 original size:2 final size:2
Alignment explanation
Indices: 77140321--77140357 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
77140311 TATATATATA
*
77140321 TG TG TG TG TG TG TG TG TG TG TG TG TA TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
77140358 TTATGGGCTT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.03, C:0.00, G:0.46, T:0.51
Consensus pattern (2 bp):
TG
Found at i:77145937 original size:41 final size:41
Alignment explanation
Indices: 77145835--77146036 Score: 169
Period size: 41 Copynumber: 5.0 Consensus size: 41
77145825 GATTTGAAGT
* * * * * **
77145835 TACCGAAGCATAAACAGGGGCACGTATGTGTAATTTAATGG
1 TACCGAAGTACAAACAAGGGCATGTATGTGCAATTTAGGGG
* * *
77145876 CACC-AAGTACAAACAGGGGCATGTATGTGTC-ATTCAGGGG
1 TACCGAAGTACAAACAAGGGCATGTATGTG-CAATTTAGGGG
* * *
77145916 TATCGAAGTACAAACAAGGGCACGTATATGCAATTTAGGGG
1 TACCGAAGTACAAACAAGGGCATGTATGTGCAATTTAGGGG
* * * * *
77145957 TACCAAAATATAAA-TAGTGGCATGTATGTGCAATTTAAGGG
1 TACCGAAGTACAAACAAG-GGCATGTATGTGCAATTTAGGGG
* **
77145998 TACCGAAGTACAAACAGGGGCACATATGTGCAA-TTAGGG
1 TACCGAAGTACAAACAAGGGCATGTATGTGCAATTTAGGG
77146037 AATAATTAAG
Statistics
Matches: 126, Mismatches: 30, Indels: 11
0.75 0.18 0.07
Matches are distributed among these distances:
40 38 0.30
41 87 0.69
42 1 0.01
ACGTcount: A:0.35, C:0.15, G:0.27, T:0.23
Consensus pattern (41 bp):
TACCGAAGTACAAACAAGGGCATGTATGTGCAATTTAGGGG
Found at i:77146009 original size:82 final size:81
Alignment explanation
Indices: 77145835--77146036 Score: 228
Period size: 82 Copynumber: 2.5 Consensus size: 81
77145825 GATTTGAAGT
* * * ** *
77145835 TACCGAAGCATAAACAGGGGCACGTATGTGTAATTTAATGGCACCAAGTACAAACAGGGGCATGT
1 TACCGAAGTACAAACAGGGGCACGTATGTGCAATTTAGGGGCACCAAATACAAACAGGGGCATGT
*
77145900 ATGTGTCATTCAGGGG
66 ATGTGTCATTCAAGGG
* * * * * * *
77145916 TATCGAAGTACAAACAAGGGCACGTATATGCAATTTAGGGGTACCAAAATATAAATAGTGGCATG
1 TACCGAAGTACAAACAGGGGCACGTATGTGCAATTTAGGGGCACC-AAATACAAACAGGGGCATG
*
77145981 TATGTG-CAATTTAAGGG
65 TATGTGTC-ATTCAAGGG
*
77145998 TACCGAAGTACAAACAGGGGCACATATGTGCAA-TTAGGG
1 TACCGAAGTACAAACAGGGGCACGTATGTGCAATTTAGGG
77146037 AATAATTAAG
Statistics
Matches: 100, Mismatches: 19, Indels: 4
0.81 0.15 0.03
Matches are distributed among these distances:
81 43 0.43
82 57 0.57
ACGTcount: A:0.35, C:0.15, G:0.27, T:0.23
Consensus pattern (81 bp):
TACCGAAGTACAAACAGGGGCACGTATGTGCAATTTAGGGGCACCAAATACAAACAGGGGCATGT
ATGTGTCATTCAAGGG
Found at i:77148174 original size:15 final size:15
Alignment explanation
Indices: 77148154--77148190 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
77148144 GCAAGGAAAG
*
77148154 AAAGAAGGAAAAAAA
1 AAAGAAAGAAAAAAA
*
77148169 AAAGAAAGAAAAGAA
1 AAAGAAAGAAAAAAA
77148184 AAAGAAA
1 AAAGAAA
77148191 AATTAGGGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (15 bp):
AAAGAAAGAAAAAAA
Found at i:77148174 original size:19 final size:21
Alignment explanation
Indices: 77148150--77148192 Score: 63
Period size: 19 Copynumber: 2.1 Consensus size: 21
77148140 ATGAGCAAGG
*
77148150 AAAGAAAG-AAGGAAAAA-AA
1 AAAGAAAGAAAAGAAAAAGAA
77148169 AAAGAAAGAAAAGAAAAAGAA
1 AAAGAAAGAAAAGAAAAAGAA
77148190 AAA
1 AAA
77148193 TTAGGGTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 8 0.38
20 8 0.38
21 5 0.24
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (21 bp):
AAAGAAAGAAAAGAAAAAGAA
Found at i:77152378 original size:2 final size:2
Alignment explanation
Indices: 77152371--77152405 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
77152361 GAGAATAGTC
77152371 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
77152406 CATGTCATGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:77153686 original size:67 final size:63
Alignment explanation
Indices: 77153488--77153739 Score: 199
Period size: 67 Copynumber: 3.9 Consensus size: 63
77153478 ATATAGTTCG
* * * *
77153488 GCTCTCTTGTAC-ACATGGTGAACACTTAGTACCACCCATGTGACCTAGC--CAGTTTATCTCGT
1 GCTCTCTTGT-CTACATGGTGTACACATAGTACCACCCATGCGACCTAGCTACA-TATAT-TCGT
77153550 A
63 A
* * * * * *
77153551 GCTCTCTTGTCTACATGGTGTCCTTCACCTGGAACCACGCATGCGACCTAGCTACATATATCCCG
1 GCTCTCTTGTCTACATGGTG---TACACATAGTACCACCCATGCGACCTAGCTACATATAT-TCG
77153616 TA
62 TA
*
77153618 GCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACATCATAATGTCTG
1 GCTCTCTTGTCTACATGGTGTACACATAGTACCACCCATGCGACCTAGCTACAT-AT-AT-TC-G
77153683 TA
62 TA
* * * ** *
77153685 GCTCTCTTGTAC-ACATGATGTGCAC-TCAGCACCATACATGTGACCTAGCTACATA
1 GCTCTCTTGT-CTACATGGTGTACACAT-AGTACCACCCATGCGACCTAGCTACATA
77153740 CCATCTGTAT
Statistics
Matches: 154, Mismatches: 24, Indels: 19
0.78 0.12 0.10
Matches are distributed among these distances:
62 1 0.01
63 18 0.12
64 28 0.18
65 2 0.01
66 27 0.18
67 75 0.49
68 3 0.02
ACGTcount: A:0.24, C:0.29, G:0.17, T:0.29
Consensus pattern (63 bp):
GCTCTCTTGTCTACATGGTGTACACATAGTACCACCCATGCGACCTAGCTACATATATTCGTA
Found at i:77154432 original size:30 final size:30
Alignment explanation
Indices: 77154398--77154458 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
77154388 TCCTTAACTC
77154398 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
77154428 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
77154458 A
1 A
77154459 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:77156823 original size:2 final size:2
Alignment explanation
Indices: 77156816--77156848 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
77156806 TGAGATAGTC
77156816 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
77156849 CATGTCATGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:77158123 original size:66 final size:63
Alignment explanation
Indices: 77157927--77158176 Score: 206
Period size: 66 Copynumber: 3.9 Consensus size: 63
77157917 ATATAGTTCG
* * *
77157927 GCTCTCTTGTAC-ACATGGTGAACACTTAGTACCACCCATGTGACCTAGC--CAGTTTATCTCGT
1 GCTCTCTTGT-CTACATGGTGTACACATAGTACCACCCATGTGACCTAGCTACA-TATAT-TCGT
77157989 A
63 A
* * * * * * *
77157990 GCTCTCTTGTCTACATGGTGTCCTTCACCTGGAACCACGCATGCGACCTAGCTACATATATCCGT
1 GCTCTCTTGTCTACATGGTG---TACACATAGTACCACCCATGTGACCTAGCTACATATATTCGT
77158055 A
63 A
*
77158056 GCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGTGA-CTAGCTACATCATAATGTCTG
1 GCTCTCTTGTCTACATGGTGTACACATAGTACCACCCATGTGACCTAGCTACAT-AT-AT-TC-G
77158120 TA
62 TA
* * * **
77158122 GCTCTCTTGTAC-ACATGATGTGCAC-TCAGCACCATACATGTGACCTAGCTACATA
1 GCTCTCTTGT-CTACATGGTGTACACAT-AGTACCACCCATGTGACCTAGCTACATA
77158177 CCATCTGTAT
Statistics
Matches: 151, Mismatches: 23, Indels: 23
0.77 0.12 0.12
Matches are distributed among these distances:
62 11 0.07
63 36 0.24
64 2 0.01
65 2 0.01
66 83 0.55
67 15 0.10
68 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.17, T:0.30
Consensus pattern (63 bp):
GCTCTCTTGTCTACATGGTGTACACATAGTACCACCCATGTGACCTAGCTACATATATTCGTA
Found at i:77162462 original size:18 final size:18
Alignment explanation
Indices: 77162425--77162462 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
77162415 GATGAGCAGG
*
77162425 AAAAGAAAGAAGGAAAAA
1 AAAAGAAAGAAGAAAAAA
*
77162443 AAAAGAAAGAA-AAAAGA
1 AAAAGAAAGAAGAAAAAA
77162460 AAA
1 AAA
77162463 GGGAAAATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 7 0.39
18 11 0.61
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (18 bp):
AAAAGAAAGAAGAAAAAA
Found at i:77162541 original size:13 final size:13
Alignment explanation
Indices: 77162523--77162549 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
77162513 TCCCTTTCCT
77162523 TGTAATTTTGATG
1 TGTAATTTTGATG
77162536 TGTAATTTTGATG
1 TGTAATTTTGATG
77162549 T
1 T
77162550 TTTTGGAATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.00, G:0.22, T:0.56
Consensus pattern (13 bp):
TGTAATTTTGATG
Found at i:77163257 original size:6 final size:6
Alignment explanation
Indices: 77163246--77163271 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
77163236 AAGTGTCGCC
77163246 TTACTG TTACTG TTACTG TTACTG TT
1 TTACTG TTACTG TTACTG TTACTG TT
77163272 TCAGATTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.15, G:0.15, T:0.54
Consensus pattern (6 bp):
TTACTG
Found at i:77165480 original size:14 final size:14
Alignment explanation
Indices: 77165461--77165495 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
77165451 AAATAATAAA
77165461 TGAGGATAAAAAAT
1 TGAGGATAAAAAAT
**
77165475 TGAGGATTGAAAAT
1 TGAGGATAAAAAAT
77165489 TGAGGAT
1 TGAGGAT
77165496 TGATAACATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.46, C:0.00, G:0.29, T:0.26
Consensus pattern (14 bp):
TGAGGATAAAAAAT
Found at i:77165496 original size:14 final size:14
Alignment explanation
Indices: 77165470--77165498 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
77165460 ATGAGGATAA
77165470 AAAATTGAGGATTG
1 AAAATTGAGGATTG
77165484 AAAATTGAGGATTG
1 AAAATTGAGGATTG
77165498 A
1 A
77165499 TAACATAAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.45, C:0.00, G:0.28, T:0.28
Consensus pattern (14 bp):
AAAATTGAGGATTG
Found at i:77172525 original size:71 final size:71
Alignment explanation
Indices: 77172441--77172604 Score: 301
Period size: 71 Copynumber: 2.3 Consensus size: 71
77172431 CGATTTGTCT
*
77172441 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCAACCCAGCTACATTTAT
77172506 CTTTCA
66 CTTTCA
* *
77172512 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCAACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCAACCCAGCTACATTTAT
77172577 CTTTCA
66 CTTTCA
77172583 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
77172605 GATACATCTC
Statistics
Matches: 90, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
71 90 1.00
ACGTcount: A:0.20, C:0.29, G:0.18, T:0.34
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCAACCCAGCTACATTTAT
CTTTCA
Found at i:77172642 original size:71 final size:70
Alignment explanation
Indices: 77172441--77172638 Score: 249
Period size: 71 Copynumber: 2.8 Consensus size: 70
77172431 CGATTTGTCT
* * * * *
77172441 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCAACCTAGCTACATTTAT
77172506 CTTTCA
65 CTTTCA
* * *
77172512 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCAACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCAACCTAGCTACATTTAT
77172577 CTTTCA
65 CTTTCA
* **
77172583 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCAACCTAGCTAC
77172639 TACAGGGTGT
Statistics
Matches: 117, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 1 0.01
71 93 0.79
ACGTcount: A:0.21, C:0.29, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCAACCTAGCTACATTTATC
TTTCA
Found at i:77175135 original size:48 final size:48
Alignment explanation
Indices: 77175064--77175390 Score: 333
Period size: 48 Copynumber: 6.9 Consensus size: 48
77175054 ACATTTGGGG
* * * *
77175064 GATATGTGTGCCAGTTTAAGACCATGTCTGGGACATGGCATCGGCCAC
1 GATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAT
* * * *
77175112 GATATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCAAT
1 GATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAT
* *
77175160 GTTGTGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-CATT
1 GATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-T
* ** *
77175208 GATATGTGCA-TTAGTGTAAGACCATGTCT-GGACATGGCATCAGCCA-
1 GATATGAG-AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAT
* *
77175254 CATTATGAGATCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-CATT
1 GA-TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-T
* * * * * *
77175303 GAGACGAGAGCTAGTGTAAGACCATGCCT-GGACATGGCATCGACCTT
1 GATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAT
* * * * *
77175350 AACATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCAT
1 GATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCAT
77175391 TGGCAATACA
Statistics
Matches: 228, Mismatches: 41, Indels: 20
0.79 0.14 0.07
Matches are distributed among these distances:
46 2 0.01
47 74 0.32
48 150 0.66
49 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (48 bp):
GATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAT
Found at i:77175300 original size:95 final size:94
Alignment explanation
Indices: 77175073--77175395 Score: 398
Period size: 95 Copynumber: 3.4 Consensus size: 94
77175063 GGATATGTGT
* *
77175073 GCCAGTTTAAGACCATGTCTGGGACATGGCATCGGCCA-CGATATGAGAGCTAGTGTAAGACCAT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-CATTGATATGAGAGCTAGTGTAAGACCAT
* * * *
77175137 GTTTGGAACATGGCATCGGCAATGTTGTGAGA
65 GTCTGG-ACATGGCATC-GCCATATTATGAGA
* *
77175169 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGCA-TTAGTGTAAGACCAT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGAG-AGCTAGTGTAAGACCAT
*
77175233 GTCTGGACATGGCATCAGCCACATTATGAGA
65 GTCTGGACATGGCATC-GCCATATTATGAGA
* * *
77175264 TCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGAGCTAGTGTAAGACCATG
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGAGAGCTAGTGTAAGACCATG
* * ** *
77175329 CCTGGACATGGCATCGACCTTAACATGTGA
66 TCTGGACATGGCATCG-CCATATTATGAGA
* * *
77175359 GCCAGTGTAAGACCATGTTTGGAACATGGCATTGGCA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
77175396 ATACACCCCC
Statistics
Matches: 198, Mismatches: 25, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
94 2 0.01
95 135 0.68
96 60 0.30
97 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (94 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGAGAGCTAGTGTAAGACCATG
TCTGGACATGGCATCGCCATATTATGAGA
Found at i:77175323 original size:143 final size:142
Alignment explanation
Indices: 77175067--77175390 Score: 402
Period size: 143 Copynumber: 2.3 Consensus size: 142
77175057 TTTGGGGGAT
* * * *
77175067 ATGTGTGCCAGTTTAAGACCATGTCTGGGACATGGCATCGGCCACGATATGAGAGCTAGTGTAAG
1 ATGTGAGCCAGTGTAAGACCATGTCT-GGACATGGCATCAGCCACGATATGAGAGCCAGTGTAAG
* * * *
77175132 ACCATGTTTGGAACATGGCATCGGCAATGTTGTGAGAGCCAGTGTAAGACCATGTCTGGGACATG
65 ACCATGTCTGGAACATGGCATCGGCAATGTAGCGAGAGCCAGTGTAAGACCATGCCT-GGACATG
* * *
77175197 GCATCGGCATTGAT
129 GCATCGACATTAAC
** *
77175211 ATGTGCA-TTAGTGTAAGACCATGTCTGGACATGGCATCAGCCAC-ATTATGAGATCCAGTGTAA
1 ATGTG-AGCCAGTGTAAGACCATGTCTGGACATGGCATCAGCCACGA-TATGAGAGCCAGTGTAA
* * *
77175274 GACCATGTCTGGGACATGGCATCGGCATTG-AGACGAGAGCTAGTGTAAGACCATGCCTGGACAT
64 GACCATGTCTGGAACATGGCATCGGCAATGTAG-CGAGAGCCAGTGTAAGACCATGCCTGGACAT
*
77175338 GGCATCGACCTTAAC
128 GGCATCGACATTAAC
*
77175353 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCAT
1 ATGTGAGCCAGTGTAAGACCATGTCTGG-ACATGGCAT
77175391 TGGCAATACA
Statistics
Matches: 154, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
141 1 0.01
142 42 0.27
143 90 0.58
144 21 0.14
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (142 bp):
ATGTGAGCCAGTGTAAGACCATGTCTGGACATGGCATCAGCCACGATATGAGAGCCAGTGTAAGA
CCATGTCTGGAACATGGCATCGGCAATGTAGCGAGAGCCAGTGTAAGACCATGCCTGGACATGGC
ATCGACATTAAC
Found at i:77177169 original size:41 final size:41
Alignment explanation
Indices: 77177112--77177194 Score: 157
Period size: 41 Copynumber: 2.0 Consensus size: 41
77177102 ATGCCTAAAC
*
77177112 AACTATCACAATATTTTCTAAGTTTACAAAGAAGAGTTATT
1 AACTATCACAATATTTTCGAAGTTTACAAAGAAGAGTTATT
77177153 AACTATCACAATATTTTCGAAGTTTACAAAGAAGAGTTATT
1 AACTATCACAATATTTTCGAAGTTTACAAAGAAGAGTTATT
77177194 A
1 A
77177195 TACTCATTGA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.42, C:0.12, G:0.11, T:0.35
Consensus pattern (41 bp):
AACTATCACAATATTTTCGAAGTTTACAAAGAAGAGTTATT
Found at i:77191269 original size:16 final size:17
Alignment explanation
Indices: 77191245--77191277 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
77191235 CTGATTCAAT
77191245 TTTGAATTCAA-ACATA
1 TTTGAATTCAACACATA
*
77191261 TTTGTATTCAACACATA
1 TTTGAATTCAACACATA
77191278 AGAGAGATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.39, C:0.15, G:0.06, T:0.39
Consensus pattern (17 bp):
TTTGAATTCAACACATA
Found at i:77192127 original size:17 final size:17
Alignment explanation
Indices: 77192105--77192140 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
77192095 CCTGGTCTCT
77192105 ATGCGAATACCCAACTG
1 ATGCGAATACCCAACTG
77192122 ATGCGAATACCCAACTG
1 ATGCGAATACCCAACTG
77192139 AT
1 AT
77192141 ACATTCGAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.36, C:0.28, G:0.17, T:0.19
Consensus pattern (17 bp):
ATGCGAATACCCAACTG
Found at i:77198811 original size:40 final size:40
Alignment explanation
Indices: 77198682--77198812 Score: 156
Period size: 40 Copynumber: 3.3 Consensus size: 40
77198672 TATGCTGGAA
* * *
77198682 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * *
77198722 GCTATATCCGGGCTAAGGCCCGAAGGCATTCGTGCGAGTT
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
77198762 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
*
77198802 ATTAAATCCGG
1 ATTATATCCGG
77198813 TTATATTCCG
Statistics
Matches: 74, Mismatches: 16, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:77217742 original size:93 final size:92
Alignment explanation
Indices: 77217584--77217753 Score: 286
Period size: 93 Copynumber: 1.8 Consensus size: 92
77217574 CGCCCTAAGT
* *
77217584 GAACTCGGACTCAACTCAACGAGCTGGCCGTTCGCATCCATAAATGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAAC
77217649 GAGTTCGGATGCCTAGTTACATCTCAC
66 GAGTTCGGATGCCTAGTTACATCTCAC
* **
77217676 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCT-GGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
77217741 CGAGTTCGGATGC
65 CGAGTTCGGATGC
77217754 TCAACCATCC
Statistics
Matches: 72, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
92 24 0.33
93 48 0.67
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCAC
Found at i:77217743 original size:46 final size:45
Alignment explanation
Indices: 77217581--77217750 Score: 179
Period size: 46 Copynumber: 3.7 Consensus size: 45
77217571 ACCCGCCCTA
* * *
77217581 AGTGAACTCGGACTCAACTCAACGAGCT-GGCCGTTCGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT
* *
77217625 AAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-T
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCAT
*
77217673 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT
77217718 AGGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 A-GTGAACTCGGACTCAACTCAACGAGTTCGGA
77217751 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 9, Indels: 21
0.78 0.07 0.16
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 3 0.03
45 27 0.26
46 31 0.30
47 29 0.28
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT
Found at i:77218203 original size:30 final size:30
Alignment explanation
Indices: 77218169--77218227 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
77218159 ATTTAATACG
77218169 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * * *
77218199 AACTTTTGCATATTTACACTTTTGCCCCT
1 AACTTTGGAAAAATTACACTTTTGCCCCT
77218228 GGACACGGGA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.08, T:0.39
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:77219679 original size:26 final size:27
Alignment explanation
Indices: 77219592--77219764 Score: 190
Period size: 27 Copynumber: 6.5 Consensus size: 27
77219582 ATACTTTAGT
*
77219592 TTACCAAAATACCACTGGTTTGTAAAA
1 TTACCAAAATACCCCTGGTTTGTAAAA
* * * *
77219619 TTACTAGAATACCCTTGGTTTATAAAA
1 TTACCAAAATACCCCTGGTTTGTAAAA
* *
77219646 TCACCAAAATACCCCTGGTCTGT-AAA
1 TTACCAAAATACCCCTGGTTTGTAAAA
77219672 TTACCAAAATACCCCTGGTTTGTAAAA
1 TTACCAAAATACCCCTGGTTTGTAAAA
* * *
77219699 TTATC--AATACCCCTAGCTTGTAAAA
1 TTACCAAAATACCCCTGGTTTGTAAAA
* * *
77219724 TTACCAAAATATCCCTGATTTGTGAAA
1 TTACCAAAATACCCCTGGTTTGTAAAA
**
77219751 TTACTGAAATACCC
1 TTACCAAAATACCC
77219765 TCGACCTGTA
Statistics
Matches: 118, Mismatches: 25, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
25 22 0.19
26 24 0.20
27 72 0.61
ACGTcount: A:0.37, C:0.22, G:0.10, T:0.31
Consensus pattern (27 bp):
TTACCAAAATACCCCTGGTTTGTAAAA
Found at i:77219719 original size:25 final size:25
Alignment explanation
Indices: 77219679--77219726 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
77219669 AAATTACCAA
* *
77219679 AATACCCCTGGTTTGTAAAATTATC
1 AATACCCCTAGCTTGTAAAATTATC
77219704 AATACCCCTAGCTTGTAAAATTA
1 AATACCCCTAGCTTGTAAAATTA
77219727 CCAAAATATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.21, G:0.10, T:0.33
Consensus pattern (25 bp):
AATACCCCTAGCTTGTAAAATTATC
Found at i:77219740 original size:52 final size:51
Alignment explanation
Indices: 77219592--77219818 Score: 154
Period size: 54 Copynumber: 4.3 Consensus size: 51
77219582 ATACTTTAGT
* * * * *
77219592 TTACCAAAATACCACTGGTTTGTAAAATTACTAGAATACCCTTGGTTTATAAAA
1 TTACC-AAATACCCCT-GCTTGTAAAATTACCAAAATACCC-TGGTTTGTAAAA
* *
77219646 TCACCAAAATACCCCTGGTCTGT-AAATTACCAAAATACCCCTGGTTTGTAAAA
1 TTACC-AAATACCCCTGCT-TGTAAAATTACCAAAATA-CCCTGGTTTGTAAAA
* * *
77219699 TTATC-AATACCCCTAGCTTGTAAAATTACCAAAATATCCCTGATTTGTGAAA
1 TTACCAAATACCCCT-GCTTGTAAAATTACCAAAATA-CCCTGGTTTGTAAAA
* * *** ** *
77219751 TTACTGAAATA-CCCTCGACCTGTAAAATTATTGAAATACCCTGAACTTGTAGAA
1 TTAC-CAAATACCCCT-G-CTTGTAAAATTACCAAAATACCCTG-GTTTGTAAAA
77219805 TTACCAAAGTACCC
1 TTACCAAA-TACCC
77219819 TTGATTTACA
Statistics
Matches: 140, Mismatches: 23, Indels: 19
0.77 0.13 0.10
Matches are distributed among these distances:
51 12 0.09
52 32 0.23
53 41 0.29
54 53 0.38
55 2 0.01
ACGTcount: A:0.37, C:0.22, G:0.11, T:0.30
Consensus pattern (51 bp):
TTACCAAATACCCCTGCTTGTAAAATTACCAAAATACCCTGGTTTGTAAAA
Found at i:77219778 original size:27 final size:26
Alignment explanation
Indices: 77219717--77219808 Score: 85
Period size: 27 Copynumber: 3.4 Consensus size: 26
77219707 ACCCCTAGCT
** **
77219717 TGTAAAATTACCAAAATATCCCTGATT
1 TGTAAAATTACTGAAATA-CCCTGACC
*
77219744 TGTGAAATTACTGAAATACCCTCGACC
1 TGTAAAATTACTGAAATACCCT-GACC
* *
77219771 TGTAAAATTATTGAAATACCCTGAACT
1 TGTAAAATTACTGAAATACCCTG-ACC
*
77219798 TGTAGAATTAC
1 TGTAAAATTAC
77219809 CAAAGTACCC
Statistics
Matches: 53, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
26 5 0.09
27 48 0.91
ACGTcount: A:0.38, C:0.18, G:0.12, T:0.32
Consensus pattern (26 bp):
TGTAAAATTACTGAAATACCCTGACC
Found at i:77219834 original size:27 final size:27
Alignment explanation
Indices: 77219803--77219873 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 27
77219793 GAACTTGTAG
* * *
77219803 AATTACCAAAGTACCCTTGATTTACAG
1 AATTACCAAAATACCCTTGACTTACAA
* ***
77219830 CATTACCATTTTACCCTTGACTTACAA
1 AATTACCAAAATACCCTTGACTTACAA
77219857 AATTACCAAAATACCCT
1 AATTACCAAAATACCCT
77219874 GTAGGGTAGA
Statistics
Matches: 34, Mismatches: 10, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.37, C:0.27, G:0.06, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGACTTACAA
Found at i:77219908 original size:27 final size:27
Alignment explanation
Indices: 77219857--77220157 Score: 403
Period size: 27 Copynumber: 11.3 Consensus size: 27
77219847 TGACTTACAA
**
77219857 AATTACCAAAATA-CCCTGTAGGGTAG
1 AATTACCGGAATACCCCTGTAGGGTAG
77219883 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGGAATACCCCTGTAGGGTAG
* *
77219910 AATTACCGGAATACCCTTGTAAGGTAG
1 AATTACCGGAATACCCCTGTAGGGTAG
*
77219937 AATTACCGGAATATCCCTGTAGGGTAG
1 AATTACCGGAATACCCCTGTAGGGTAG
* *
77219964 AATTACC-GAATACCCCTATAAGGTAG
1 AATTACCGGAATACCCCTGTAGGGTAG
*
77219990 AATTACCAGAATACCCCTGTAGGGTAG
1 AATTACCGGAATACCCCTGTAGGGTAG
77220017 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGGAATACCCCTGTAGGGTAG
* *
77220044 AATTACCGTAATACCCTTGTAGGGTAG
1 AATTACCGGAATACCCCTGTAGGGTAG
*
77220071 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGGAATACCCCTGTAGGGTAG
*** *
77220098 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCGGAATACCCCTGTAGGGTAG
* * *
77220125 AATTACC-GAGATA-CCTTGTGGGGTAA
1 AATTACCGGA-ATACCCCTGTAGGGTAG
77220151 AATTACC
1 AATTACC
77220158 ATTTTGCCCC
Statistics
Matches: 246, Mismatches: 26, Indels: 6
0.88 0.09 0.02
Matches are distributed among these distances:
26 51 0.21
27 195 0.79
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (27 bp):
AATTACCGGAATACCCCTGTAGGGTAG
Found at i:77219942 original size:107 final size:107
Alignment explanation
Indices: 77219857--77220160 Score: 402
Period size: 107 Copynumber: 2.8 Consensus size: 107
77219847 TGACTTACAA
*
77219857 AATTACCAAAATA-CCCTGTAGGGTAGAATTACCGGAATACCCCTGTAGGGTAGAATTACCGGAA
1 AATTACC-AAATACCCCTGTAGGGTAGAATTACCAGAATACCCCTGTAGGGTAGAATTACCGGAA
* *
77219921 TACCCTTGTAAGGTAGAATTACCGGAATAT-CCC-TGTAGGGTAG
65 TACCCTTGTAGGGTAGAATTACC--ATTATACCCTTGTAGGGTAG
* * *
77219964 AATTACCGAATACCCCTATAAGGTAGAATTACCAGAATACCCCTGTAGGGTAGAATTACCGGAAT
1 AATTACCAAATACCCCTGTAGGGTAGAATTACCAGAATACCCCTGTAGGGTAGAATTACCGGAAT
* * *
77220029 ACCCCTGTAGGGTAGAATTACCGTAATACCCTTGTAGGGTAG
66 ACCCTTGTAGGGTAGAATTACCATTATACCCTTGTAGGGTAG
* * *
77220071 AATTACCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTGGAATTACC-GAG
1 AATTACC-AAATACCCCTGTAGGGTAGAATTACCAGAATACCCCTGTAGGGTAGAATTACCGGA-
* *
77220135 ATA-CCTTGTGGGGTAAAATTACCATT
64 ATACCCTTGTAGGGTAGAATTACCATT
77220161 TTGCCCCTAA
Statistics
Matches: 172, Mismatches: 20, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
105 2 0.01
106 7 0.04
107 113 0.66
108 50 0.29
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (107 bp):
AATTACCAAATACCCCTGTAGGGTAGAATTACCAGAATACCCCTGTAGGGTAGAATTACCGGAAT
ACCCTTGTAGGGTAGAATTACCATTATACCCTTGTAGGGTAG
Found at i:77220626 original size:22 final size:22
Alignment explanation
Indices: 77220582--77220646 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 22
77220572 TTAAAGCCTT
* * **
77220582 CTGATTATGGCTTTGTGTTAAC
1 CTGAATATGGCTCTGTGCCAAC
77220604 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-ATATGGCTCTGTGCCAAC
* *
77220626 CTGATTATGGCTGTGTGCCAA
1 CTGAATATGGCTCTGTGCCAA
77220647 ACGTATTTAC
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 1 0.03
22 33 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.35
Consensus pattern (22 bp):
CTGAATATGGCTCTGTGCCAAC
Found at i:77221046 original size:31 final size:31
Alignment explanation
Indices: 77221008--77221148 Score: 201
Period size: 31 Copynumber: 4.5 Consensus size: 31
77220998 TTGCATTCAC
77221008 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
* *
77221039 ATTCTGATTTTGATTCTGTTACCTGATGCTA
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
*
77221070 ATTCTGATTTTGATTCGGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
* * * *
77221101 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
* *
77221132 ATTCTGGTTCTGATTCT
1 ATTCTGATTTTGATTCT
77221149 AATTCTGATT
Statistics
Matches: 99, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 99 1.00
ACGTcount: A:0.18, C:0.18, G:0.16, T:0.48
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTG
Found at i:77221047 original size:6 final size:6
Alignment explanation
Indices: 77221008--77221175 Score: 112
Period size: 6 Copynumber: 27.3 Consensus size: 6
77220998 TTGCATTCAC
* * *
77221008 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTTTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * * *
77221057 -TTACCTG ATGCTA ATTCTG ATTTTG ATTC-G GTTACCTG ATACTG ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG
* * * *
77221107 ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG GTTCTG ATTCTA ATTCTG
1 ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG
77221156 ATTCTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG A-TTCTG AT
77221176 AATGTTTCTT
Statistics
Matches: 124, Mismatches: 24, Indels: 28
0.70 0.14 0.16
Matches are distributed among these distances:
5 9 0.07
6 100 0.81
7 10 0.08
8 5 0.04
ACGTcount: A:0.19, C:0.17, G:0.16, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:77223203 original size:26 final size:27
Alignment explanation
Indices: 77223116--77223288 Score: 190
Period size: 27 Copynumber: 6.5 Consensus size: 27
77223106 ATACTTTAGT
*
77223116 TTACCAAAATACCACTGGTTTGTAAAA
1 TTACCAAAATACCCCTGGTTTGTAAAA
* * * *
77223143 TTACTAGAATACCCTTGGTTTATAAAA
1 TTACCAAAATACCCCTGGTTTGTAAAA
*
77223170 TCACCAAAATACCCCTGGTTTGT-AAA
1 TTACCAAAATACCCCTGGTTTGTAAAA
*
77223196 TTTCCAAAATACCCCTGGTTTGTAAAA
1 TTACCAAAATACCCCTGGTTTGTAAAA
* * *
77223223 TTATC--AATACCCCTAGCTTGTAAAA
1 TTACCAAAATACCCCTGGTTTGTAAAA
* * *
77223248 TTACCAAAATATCCCTGATTTGTGAAA
1 TTACCAAAATACCCCTGGTTTGTAAAA
**
77223275 TTACTGAAATACCC
1 TTACCAAAATACCC
77223289 TCAACCTGTA
Statistics
Matches: 118, Mismatches: 25, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
25 22 0.19
26 24 0.20
27 72 0.61
ACGTcount: A:0.36, C:0.21, G:0.10, T:0.32
Consensus pattern (27 bp):
TTACCAAAATACCCCTGGTTTGTAAAA
Found at i:77223243 original size:25 final size:25
Alignment explanation
Indices: 77223203--77223250 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
77223193 AAATTTCCAA
* *
77223203 AATACCCCTGGTTTGTAAAATTATC
1 AATACCCCTAGCTTGTAAAATTATC
77223228 AATACCCCTAGCTTGTAAAATTA
1 AATACCCCTAGCTTGTAAAATTA
77223251 CCAAAATATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.21, G:0.10, T:0.33
Consensus pattern (25 bp):
AATACCCCTAGCTTGTAAAATTATC
Found at i:77223311 original size:26 final size:27
Alignment explanation
Indices: 77223272--77223331 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 27
77223262 CTGATTTGTG
77223272 AAATTACTGAAATACCCTCAACCTGTA
1 AAATTACTGAAATACCCTCAACCTGTA
* * *
77223299 AAATTATTG-AATACCCTCGACTTGTA
1 AAATTACTGAAATACCCTCAACCTGTA
*
77223325 GAATTAC
1 AAATTAC
77223332 CAAAGTACCC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 20 0.71
27 8 0.29
ACGTcount: A:0.38, C:0.22, G:0.10, T:0.30
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCAACCTGTA
Found at i:77223410 original size:27 final size:27
Alignment explanation
Indices: 77223380--77223681 Score: 385
Period size: 27 Copynumber: 11.3 Consensus size: 27
77223370 CGATTTACAA
*
77223380 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
77223407 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
77223434 AATTACCGGAATACCCCTGTAAGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
77223461 AATTACCGGAATATCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
77223488 AATTACCGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
77223515 AATTACC-AGAATACCCCTATAGGGTAG
1 AATTACCGA-AATACCCCTGTAGGGTAG
*
77223542 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
77223569 AATTACCGCAATAACCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
77223596 AATTATCGAAATACCCCTG-AGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * *
77223622 AATTACTAAAACACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
77223649 AATTACCGAGATA-CCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
77223675 AATTACC
1 AATTACC
77223682 ATTTTGCCCC
Statistics
Matches: 240, Mismatches: 32, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
26 39 0.16
27 201 0.84
ACGTcount: A:0.34, C:0.21, G:0.22, T:0.23
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:77224152 original size:22 final size:22
Alignment explanation
Indices: 77224108--77224172 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 22
77224098 TTAAAGCCTT
* * **
77224108 CTGATTATGGCTTTGTGTTAAC
1 CTGAATATGGCTCTGTGCCAAC
77224130 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-ATATGGCTCTGTGCCAAC
* *
77224152 CTGATTATGGCTGTGTGCCAA
1 CTGAATATGGCTCTGTGCCAA
77224173 ACGTATTTAC
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 1 0.03
22 33 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.35
Consensus pattern (22 bp):
CTGAATATGGCTCTGTGCCAAC
Found at i:77224367 original size:26 final size:27
Alignment explanation
Indices: 77224331--77224403 Score: 94
Period size: 27 Copynumber: 2.7 Consensus size: 27
77224321 ATTCTGTTAA
* *
77224331 GTGGCTTTGCCACATTATCTA-TTCTG
1 GTGGCTCTGCCACAATATCTATTTCTG
77224357 GTGGCTCTGCCACAATATCTATTTCTG
1 GTGGCTCTGCCACAATATCTATTTCTG
* **
77224384 GTGACTCTATCACAATATCT
1 GTGGCTCTGCCACAATATCT
77224404 GATAACTGAG
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
26 19 0.46
27 22 0.54
ACGTcount: A:0.21, C:0.25, G:0.16, T:0.38
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTATTTCTG
Found at i:77224568 original size:19 final size:19
Alignment explanation
Indices: 77224546--77224602 Score: 56
Period size: 19 Copynumber: 3.4 Consensus size: 19
77224536 ATTCTGATTT
77224546 TGATTCTGTTACCTGATAC
1 TGATTCTGTTACCTGATAC
*
77224565 TGATTCTG--A--T--T-T
1 TGATTCTGTTACCTGATAC
77224577 TGATTCTGTTACCTGATAC
1 TGATTCTGTTACCTGATAC
77224596 TGATTCT
1 TGATTCT
77224603 AATTTTGATT
Statistics
Matches: 29, Mismatches: 2, Indels: 14
0.64 0.04 0.31
Matches are distributed among these distances:
12 8 0.28
13 1 0.03
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
18 1 0.03
19 15 0.52
ACGTcount: A:0.19, C:0.18, G:0.16, T:0.47
Consensus pattern (19 bp):
TGATTCTGTTACCTGATAC
Found at i:77224574 original size:31 final size:31
Alignment explanation
Indices: 77224536--77224676 Score: 192
Period size: 31 Copynumber: 4.5 Consensus size: 31
77224526 TTGCATTCAC
*
77224536 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTAATACTG
*
77224567 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTAATACTG
* *
77224598 ATTCTAATTTTGATTCGGTTACCTAATACTG
1 ATTCTGATTTTGATTCTGTTACCTAATACTG
* * * *
77224629 ATTCTGATTCTGATTCTGTCACCTAATTCTA
1 ATTCTGATTTTGATTCTGTTACCTAATACTG
* *
77224660 ATTCTGGTTCTGATTCT
1 ATTCTGATTTTGATTCT
77224677 AATTCTGATT
Statistics
Matches: 100, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 100 1.00
ACGTcount: A:0.21, C:0.18, G:0.14, T:0.48
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTAATACTG
Found at i:77224637 original size:6 final size:6
Alignment explanation
Indices: 77224626--77224703 Score: 70
Period size: 6 Copynumber: 12.8 Consensus size: 6
77224616 TTACCTAATA
* * * *
77224626 CTGATT CTGATT CTGATT CTG-TCAC CTAATT CTAATT CTGGTT CTGATT
1 CTGATT CTGATT CTGATT CTGAT--T CTGATT CTGATT CTGATT CTGATT
*
77224675 CTAATT CTGATT CTGATT CT-AGTT CTGAT
1 CTGATT CTGATT CTGATT CTGA-TT CTGAT
77224704 AATGTTTCTT
Statistics
Matches: 59, Mismatches: 8, Indels: 10
0.77 0.10 0.13
Matches are distributed among these distances:
5 2 0.03
6 53 0.90
7 3 0.05
8 1 0.02
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.47
Consensus pattern (6 bp):
CTGATT
Found at i:77224677 original size:18 final size:18
Alignment explanation
Indices: 77224536--77224703 Score: 101
Period size: 18 Copynumber: 9.1 Consensus size: 18
77224526 TTGCATTCAC
* *
77224536 ATTCTGATTTTGATTCTG
1 ATTCTGATTCTAATTCTG
* *
77224554 -TTACCTGATACTGATTCTG
1 ATT--CTGATTCTAATTCTG
* *
77224573 ATTTTGATTCT-GTTACCTG
1 ATTCTGATTCTAATT--CTG
* *
77224592 ATACTGATTCTAATTTTG
1 ATTCTGATTCTAATTCTG
* *
77224610 ATTC-GGTTACCTAATACTG
1 ATTCTGATT--CTAATTCTG
*
77224629 ATTCTGATTCTGATTCTG
1 ATTCTGATTCTAATTCTG
* *
77224647 -TCACCTAATTCTAATTCTG
1 AT--TCTGATTCTAATTCTG
*
77224666 GTTCTGATTCTAATTCTG
1 ATTCTGATTCTAATTCTG
*
77224684 ATTCTGATTCTAGTTCTG
1 ATTCTGATTCTAATTCTG
77224702 AT
1 AT
77224704 AATGTTTCTT
Statistics
Matches: 115, Mismatches: 23, Indels: 24
0.71 0.14 0.15
Matches are distributed among these distances:
17 8 0.07
18 50 0.43
19 49 0.43
20 8 0.07
ACGTcount: A:0.21, C:0.17, G:0.14, T:0.48
Consensus pattern (18 bp):
ATTCTGATTCTAATTCTG
Found at i:77228907 original size:53 final size:53
Alignment explanation
Indices: 77228736--77228931 Score: 176
Period size: 53 Copynumber: 3.6 Consensus size: 53
77228726 AGGATATCAA
* * * * * * * * * *
77228736 GTAAAACCATGACAAGACATGACATTGGTAAGTTTTACAAGGCAAGGAAATCAT
1 GTAAGACCATGCCAAGACATGGCAATGGTAAG-TTCATAAGGCAAAGATACCAC
* * * * * * *
77228790 GTAAGACCATGTCAAGACATGGCATTGATAAACTACAATAAGGCAAAGATCCCAT
1 GTAAGACCATGCCAAGACATGGCAATGGT-AAGTTC-ATAAGGCAAAGATACCAC
* * *
77228845 GTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGCAAGGATACCAC
1 GTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGCAAAGATACCAC
*
77228898 GTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 GTAAGACCATGCCAAGACATGGCAATGGTAAGTT
77228932 TAAAAAGGAA
Statistics
Matches: 115, Mismatches: 25, Indels: 5
0.79 0.17 0.03
Matches are distributed among these distances:
53 46 0.40
54 29 0.25
55 40 0.35
ACGTcount: A:0.39, C:0.18, G:0.23, T:0.20
Consensus pattern (53 bp):
GTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGCAAAGATACCAC
Found at i:77231868 original size:29 final size:29
Alignment explanation
Indices: 77231835--77231945 Score: 105
Period size: 29 Copynumber: 3.8 Consensus size: 29
77231825 TGACGAGATT
** *
77231835 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCAAGCTGGAAAAATAA
* * *
77231864 GGCACTAAGTGTTCATGCTGGAAAAATAT
1 GGCACTAAGTGTGCAAGCTGGAAAAATAA
* * *
77231893 GACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCAAGCTGGAAAAATAA
** *
77231922 GGCACTGGGTGTGCGAGCTCGGAA
1 GGCACTAAGTGTGCAAGCT-GGAA
77231946 GGTATGGCAC
Statistics
Matches: 68, Mismatches: 13, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
29 64 0.94
30 4 0.06
ACGTcount: A:0.31, C:0.16, G:0.31, T:0.23
Consensus pattern (29 bp):
GGCACTAAGTGTGCAAGCTGGAAAAATAA
Found at i:77239951 original size:29 final size:29
Alignment explanation
Indices: 77239918--77240028 Score: 114
Period size: 29 Copynumber: 3.8 Consensus size: 29
77239908 TGACGAGATT
** *
77239918 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCAAGCTGGAAAAATAA
* *
77239947 GGCACTAAGTGTGCATGCTGGAAAAATAT
1 GGCACTAAGTGTGCAAGCTGGAAAAATAA
* * *
77239976 GACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCAAGCTGGAAAAATAA
** *
77240005 GGCACTGGGTGTGCGAGCTCGGAA
1 GGCACTAAGTGTGCAAGCT-GGAA
77240029 GGTATGGCAC
Statistics
Matches: 70, Mismatches: 11, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
29 66 0.94
30 4 0.06
ACGTcount: A:0.31, C:0.16, G:0.32, T:0.22
Consensus pattern (29 bp):
GGCACTAAGTGTGCAAGCTGGAAAAATAA
Found at i:77242123 original size:17 final size:18
Alignment explanation
Indices: 77242096--77242129 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
77242086 AATTAAATAT
77242096 ATGCATATTAAATTATTA
1 ATGCATATTAAATTATTA
*
77242114 ATGC-TATTAATTTATT
1 ATGCATATTAAATTATT
77242130 TAAACAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.38, C:0.06, G:0.06, T:0.50
Consensus pattern (18 bp):
ATGCATATTAAATTATTA
Found at i:77242387 original size:131 final size:132
Alignment explanation
Indices: 77242149--77242387 Score: 317
Period size: 134 Copynumber: 1.8 Consensus size: 132
77242139 ATGAAATATG
* * *
77242149 ATTAAAACTAATCTTAATTCTATGCTAAATTGATAAAAATTAATATATAAAATTATAATAGATAT
1 ATTAAAACTAATCCTAACTCTATGATAAATTGATAAAAATTAATATAT--AATTATAATAGATAT
* **
77242214 AGTTATATATTAAAGATTATCATCTTATTATTATTTGAAAAAAAAACTTATCAAATAAAATATGA
64 AATTATATATTAAAGATTATCATCTTATTATTATTAAAAAAAAAAACTTATCAAATAAAATATGA
77242279 TTAA
129 TTAA
* * *
77242283 ATTAAGACTAATCCTAACTCTAT-ATAAAGTTGATAATAATTAATATAT-ATTATAATGGATATA
1 ATTAAAACTAATCCTAACTCTATGATAAA-TTGATAAAAATTAATATATAATTATAATAGATATA
*
77242346 ATTATATATTAATA-ATTATCATCTT-TT-TTATTAAAATAAAAA
65 ATTATATATTAA-AGATTATCATCTTATTATTATTAAAAAAAAAA
77242388 CATTTATTCT
Statistics
Matches: 93, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
129 12 0.13
130 2 0.02
131 36 0.39
132 1 0.01
133 4 0.04
134 38 0.41
ACGTcount: A:0.49, C:0.06, G:0.05, T:0.40
Consensus pattern (132 bp):
ATTAAAACTAATCCTAACTCTATGATAAATTGATAAAAATTAATATATAATTATAATAGATATAA
TTATATATTAAAGATTATCATCTTATTATTATTAAAAAAAAAAACTTATCAAATAAAATATGATT
AA
Found at i:77249832 original size:22 final size:22
Alignment explanation
Indices: 77249790--77249834 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
77249780 TTATTAACCC
*
77249790 AAATTAAATTGGATATAAATTA
1 AAATTAAATTAGATATAAATTA
*
77249812 AAATT-AATTAGATTATGAATTA
1 AAATTAAATTAGA-TATAAATTA
77249834 A
1 A
77249835 TACACATAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 6 0.30
22 14 0.70
ACGTcount: A:0.53, C:0.00, G:0.09, T:0.38
Consensus pattern (22 bp):
AAATTAAATTAGATATAAATTA
Found at i:77251146 original size:2 final size:2
Alignment explanation
Indices: 77251139--77251192 Score: 99
Period size: 2 Copynumber: 27.0 Consensus size: 2
77251129 AACATCTCTT
*
77251139 CA CA CA CA CA CA CA CA TA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
77251181 CA CA CA CA CA CA
1 CA CA CA CA CA CA
77251193 TTTATTCTAG
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 50 1.00
ACGTcount: A:0.50, C:0.48, G:0.00, T:0.02
Consensus pattern (2 bp):
CA
Found at i:77256367 original size:21 final size:21
Alignment explanation
Indices: 77256343--77256390 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
77256333 ATGATGAATC
*
77256343 CGGCTTTTAAGATGGATCAAT
1 CGGCTTCTAAGATGGATCAAT
* *
77256364 CGGCTTCTGAGATGGATTAAT
1 CGGCTTCTAAGATGGATCAAT
77256385 CGGCTT
1 CGGCTT
77256391 ACTCGGAGTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.23, C:0.17, G:0.27, T:0.33
Consensus pattern (21 bp):
CGGCTTCTAAGATGGATCAAT
Found at i:77257457 original size:18 final size:18
Alignment explanation
Indices: 77257434--77257469 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
77257424 GCTAAACAAG
77257434 TTACATAACATAGACTAA
1 TTACATAACATAGACTAA
77257452 TTACATAACATAGACTAA
1 TTACATAACATAGACTAA
77257470 CTATTAAGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.50, C:0.17, G:0.06, T:0.28
Consensus pattern (18 bp):
TTACATAACATAGACTAA
Found at i:77264598 original size:40 final size:39
Alignment explanation
Indices: 77264553--77264760 Score: 193
Period size: 40 Copynumber: 5.2 Consensus size: 39
77264543 CGGAATACGA
*
77264553 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
77264593 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
77264633 CCGGATTTAACAACTCGCACGAAA-GCCTTTGGGTCTTAGC
1 CCGGATATAACCACT-GCAC-AAATGCCTTCGGGTCTTAGC
* ** * *
77264673 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * * *
77264713 CCGGATATAATTACCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCA-CTGCACAAATGCCTTCGGGTCTTAGC
77264753 CCGGATAT
1 CCGGATAT
77264761 CATTCAATTG
Statistics
Matches: 137, Mismatches: 27, Indels: 8
0.80 0.16 0.05
Matches are distributed among these distances:
39 3 0.02
40 130 0.95
41 4 0.03
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:77269040 original size:28 final size:28
Alignment explanation
Indices: 77268971--77269071 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
77268961 GACAAGATTG
* * * *
77268971 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
77269001 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
77269029 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
77269058 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
77269072 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:77272319 original size:14 final size:15
Alignment explanation
Indices: 77272288--77272318 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
77272278 ACCGCTCGGA
77272288 GGTATGTGAAAAAGG
1 GGTATGTGAAAAAGG
77272303 GGTATGTGAAAAAGG
1 GGTATGTGAAAAAGG
77272318 G
1 G
77272319 TGTGAAACAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.00, G:0.42, T:0.19
Consensus pattern (15 bp):
GGTATGTGAAAAAGG
Found at i:77276999 original size:28 final size:28
Alignment explanation
Indices: 77276930--77277030 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
77276920 GACAAGATTG
* * * *
77276930 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
77276960 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
77276988 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
77277017 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
77277031 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:77280850 original size:64 final size:64
Alignment explanation
Indices: 77280746--77280953 Score: 179
Period size: 67 Copynumber: 3.2 Consensus size: 64
77280736 CATCATGTGT
*
77280746 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATG
1 ACAAGAGAGCTACAAG--A-TA-AATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATG
77280811 TAG
62 TAG
*** * * * * * * *
77280814 ACAAGAGAGCTATGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACAAGATAAATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGT
77280879 AG
63 AG
* * * *
77280881 ACAAGAGAGCTACAAGATAAACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-G
1 ACAAGAGAGCTACAAGATAAA-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG
77280943 TACAAGAGAGC
1 -ACAAGAGAGC
77280954 CGAACTATAT
Statistics
Matches: 112, Mismatches: 23, Indels: 15
0.75 0.15 0.10
Matches are distributed among these distances:
62 1 0.01
63 19 0.17
64 21 0.19
65 10 0.09
66 17 0.15
67 29 0.26
68 15 0.13
ACGTcount: A:0.32, C:0.17, G:0.28, T:0.23
Consensus pattern (64 bp):
ACAAGAGAGCTACAAGATAAATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG
Found at i:77282045 original size:2 final size:2
Alignment explanation
Indices: 77282038--77282064 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
77282028 TCATGACATG
77282038 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
77282065 GACTAGTCTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:77284253 original size:48 final size:48
Alignment explanation
Indices: 77284196--77284422 Score: 178
Period size: 48 Copynumber: 4.8 Consensus size: 48
77284186 ACATGGTAGG
* * * *
77284196 ATGCCAATGCCATATCCCGGATATGATCTTACATGGGATCACATATCA
1 ATGCCAATGCCATGTCCCAGAAATGGTCTTACATGGGATCACATATCA
* * ** ** *
77284244 ATGCCAATGCCATGTCCTAGAAACGGTCTTACATGGGATCGTAGGTCG
1 ATGCCAATGCCATGTCCCAGAAATGGTCTTACATGGGATCACATATCA
* *
77284292 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCG
1 ATGCCAATGCCATGTCCCAGAAATGGTCTTACATGGGATCACATATCA
* * ** ** * * *
77284340 ATGTCGAT---A-G-CCTC-GCTATGGTCTTACATGAAATTACATACCG
1 ATGCCAATGCCATGTCC-CAGAAATGGTCTTACATGGGATCACATATCA
* * *
77284383 ATGCCAAAGCCATGTCCTAGACATGGTCTTACATGGGATC
1 ATGCCAATGCCATGTCCCAGAAATGGTCTTACATGGGATC
77284423 GCACATAACC
Statistics
Matches: 137, Mismatches: 35, Indels: 14
0.74 0.19 0.08
Matches are distributed among these distances:
43 30 0.22
44 2 0.01
45 1 0.01
46 1 0.01
47 1 0.01
48 102 0.74
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (48 bp):
ATGCCAATGCCATGTCCCAGAAATGGTCTTACATGGGATCACATATCA
Found at i:77292266 original size:42 final size:41
Alignment explanation
Indices: 77292211--77292324 Score: 115
Period size: 43 Copynumber: 2.7 Consensus size: 41
77292201 CAATATCAAT
*
77292211 GCCTCTGTCCCAGACAAGGTCTTACACGAAA-TCAGATACGAA
1 GCCTGTGTCCCAGACAAGGTCTTACACGAAACTCA-AT-CGAA
* * * *
77292253 GCC-GATGTCCCAGACATGGTCTTATACTTAAATCTCAATCGAG
1 GCCTG-TGTCCCAGACAAGGTCTTACAC-GAAA-CTCAATCGAA
*
77292296 GCCTGTGTCCCAGACACGGTCTTACACGA
1 GCCTGTGTCCCAGACAAGGTCTTACACGA
77292325 TGTCTCAGAT
Statistics
Matches: 59, Mismatches: 8, Indels: 10
0.77 0.10 0.13
Matches are distributed among these distances:
42 24 0.41
43 29 0.49
44 3 0.05
45 3 0.05
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (41 bp):
GCCTGTGTCCCAGACAAGGTCTTACACGAAACTCAATCGAA
Found at i:77292994 original size:43 final size:43
Alignment explanation
Indices: 77292946--77293030 Score: 170
Period size: 43 Copynumber: 2.0 Consensus size: 43
77292936 TATCAACAAT
77292946 GGCATTTCATGAAATCTTTAACAGAAATAGAAATTCAGACATG
1 GGCATTTCATGAAATCTTTAACAGAAATAGAAATTCAGACATG
77292989 GGCATTTCATGAAATCTTTAACAGAAATAGAAATTCAGACAT
1 GGCATTTCATGAAATCTTTAACAGAAATAGAAATTCAGACAT
77293031 AGGCTTTGAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.42, C:0.14, G:0.15, T:0.28
Consensus pattern (43 bp):
GGCATTTCATGAAATCTTTAACAGAAATAGAAATTCAGACATG
Found at i:77294261 original size:38 final size:35
Alignment explanation
Indices: 77294202--77294319 Score: 135
Period size: 31 Copynumber: 3.5 Consensus size: 35
77294192 TCAATCATGC
*
77294202 ACTGGGCCGTAGCCCTTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTT-AT--T
77294241 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
77294272 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
77294303 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
77294320 ACTGTAAACG
Statistics
Matches: 78, Mismatches: 1, Indels: 8
0.90 0.01 0.09
Matches are distributed among these distances:
31 49 0.63
33 2 0.03
34 1 0.01
36 1 0.01
38 14 0.18
39 11 0.14
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.37
Consensus pattern (35 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
Found at i:77294263 original size:31 final size:31
Alignment explanation
Indices: 77294225--77294319 Score: 181
Period size: 31 Copynumber: 3.1 Consensus size: 31
77294215 CCTTTTCATA
*
77294225 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
77294256 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
77294287 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
77294318 TT
1 TT
77294320 ACTGTAAACG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATATTACTGGGCCGAAGCCT
Found at i:77294562 original size:24 final size:24
Alignment explanation
Indices: 77294511--77294653 Score: 200
Period size: 24 Copynumber: 6.0 Consensus size: 24
77294501 GCTTTATCAT
*
77294511 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
77294536 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
77294560 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
* *
77294583 ATAACTGGGGTATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
77294607 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
77294631 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
77294654 TCACTTCCTC
Statistics
Matches: 109, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
23 22 0.20
24 75 0.69
25 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:77294590 original size:47 final size:48
Alignment explanation
Indices: 77294511--77294652 Score: 198
Period size: 47 Copynumber: 3.0 Consensus size: 48
77294501 GCTTTATCAT
* *
77294511 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCA
* **
77294560 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGTATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
*
77294607 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
77294653 TTCACTTCCT
Statistics
Matches: 85, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
47 43 0.51
48 30 0.35
49 12 0.14
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.29
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:77294729 original size:20 final size:20
Alignment explanation
Indices: 77294704--77294763 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
77294694 TATGATTACC
77294704 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
77294724 TCATGTGCATAGCATACATT
1 TCATGTGCATATCATACATA
77294744 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
77294764 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:77294838 original size:25 final size:25
Alignment explanation
Indices: 77294806--77294855 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
77294796 ATACATAAAC
* * *
77294806 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
77294831 CCTAGGGGCAAAACGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
77294856 TATTATAAGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.34
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:77295065 original size:37 final size:37
Alignment explanation
Indices: 77295015--77295086 Score: 135
Period size: 37 Copynumber: 1.9 Consensus size: 37
77295005 TAGCCAATTC
77295015 TGTCGTCTAGGCCCACTAAGCCTATATTCCATAACGG
1 TGTCGTCTAGGCCCACTAAGCCTATATTCCATAACGG
*
77295052 TGTCGTCTAGGCCCACTTAGCCTATATTCCATAAC
1 TGTCGTCTAGGCCCACTAAGCCTATATTCCATAAC
77295087 AGTTTTAACA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.24, C:0.31, G:0.17, T:0.29
Consensus pattern (37 bp):
TGTCGTCTAGGCCCACTAAGCCTATATTCCATAACGG
Found at i:77296147 original size:27 final size:27
Alignment explanation
Indices: 77296127--77296473 Score: 371
Period size: 27 Copynumber: 12.9 Consensus size: 27
77296117 AGGGTATTTT
* *
77296127 AGTAATTTTGTAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
77296154 AGTAATTTTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
77296181 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
77296208 AGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
77296235 GGAAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
77296262 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
77296289 -GATAATTATGTAAATCTG-GGGTAAAAT
1 AG-TAATTCTGTAAATC-GAGGGTAAAAC
* * *
77296316 TGTAATTATGTAAAT-TAGGGGTAAAAC
1 AGTAATTCTGTAAATCGA-GGGTAAAAC
* * *
77296343 -GATAATTCTATAAATCGATGGTAAAAT
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
77296370 AGTAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
77296397 AGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * **
77296424 GGTAATTTTACAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* ** *
77296451 GGTAATTCAATAAATTGAGGGTA
1 AGTAATTCTGTAAATCGAGGGTA
77296474 CTTTGGTAAT
Statistics
Matches: 279, Mismatches: 31, Indels: 20
0.85 0.09 0.06
Matches are distributed among these distances:
26 3 0.01
27 271 0.97
28 5 0.02
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.29
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:77296497 original size:27 final size:26
Alignment explanation
Indices: 77296468--77296701 Score: 236
Period size: 27 Copynumber: 8.7 Consensus size: 26
77296458 CAATAAATTG
* * *
77296468 AGGGTACTTTGGTAATTTTACAAGTCG
1 AGGGTATTTTGGTAATTTTACAA-ACT
*** ** *
77296495 AGGGTATTTCAATAATTTTACAGGTCG
1 AGGGTATTTTGGTAATTTTACA-AACT
** * *
77296522 AGGGTATTTCAGTAATTTCACAAATT
1 AGGGTATTTTGGTAATTTTACAAACT
77296548 AGGGGTATTTTGGTAATTTTACAAACT
1 A-GGGTATTTTGGTAATTTTACAAACT
*
77296575 AGGGGTATTTTGATAATTTTACAAACT
1 A-GGGTATTTTGGTAATTTTACAAACT
77296602 AGGGGTATTTTGGTAATTTTACAAACT
1 A-GGGTATTTTGGTAATTTTACAAACT
* *
77296629 AGGGGTATTTTGGTAATTTTATAAACCA
1 A-GGGTATTTTGGTAATTTTACAAA-CT
*
77296657 AGGGTATTTTAGTAATTTTACAAAGC-
1 AGGGTATTTTGGTAATTTTACAAA-CT
77296683 AGGGTATTTTGGTAATTTT
1 AGGGTATTTTGGTAATTTT
77296702 GTAAACCAAA
Statistics
Matches: 181, Mismatches: 23, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
26 19 0.10
27 160 0.88
28 2 0.01
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.40
Consensus pattern (26 bp):
AGGGTATTTTGGTAATTTTACAAACT
Found at i:77296511 original size:81 final size:81
Alignment explanation
Indices: 77296426--77296688 Score: 212
Period size: 81 Copynumber: 3.3 Consensus size: 81
77296416 GGTAAAACGG
* *
77296426 TAATTTTACAAATCGAGGGTAAAACGGTAA-TTCAATAAATT-GAGGGTACTTTGGTAATTTTAC
1 TAATTTTACAAATCGAGGGTAAAACAGTAATTTC-ACAAATTAG-GGGTACTTTGGTAATTTTAC
*
77296489 AAGTCGA-GGGTATTTCAA
64 AA-ACGAGGGGTATTTCAA
** *** *
77296507 TAATTTTACAGGTCGAGGGTATTTCAGTAATTTCACAAATTAGGGGTATTTTGGTAATTTTACAA
1 TAATTTTACAAATCGAGGGTAAAACAGTAATTTCACAAATTAGGGGTACTTTGGTAATTTTACAA
* **
77296572 ACTAGGGGTATTTTGA
66 ACGAGGGGTATTTCAA
* ***** * * * *
77296588 TAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATA
1 TAATTTTACAAATCGA-GGGTAAAACAGTAATTTCACAAATTAGGGGTACTTTGGTAATTTTACA
* * * *
77296652 AACCAAGGGTATTTTAG
65 AACGAGGGGTATTTCAA
*
77296669 TAATTTTACAAAGC-AGGGTA
1 TAATTTTACAAATCGAGGGTA
77296689 TTTTGGTAAT
Statistics
Matches: 153, Mismatches: 24, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
80 9 0.06
81 139 0.91
82 5 0.03
ACGTcount: A:0.33, C:0.09, G:0.21, T:0.37
Consensus pattern (81 bp):
TAATTTTACAAATCGAGGGTAAAACAGTAATTTCACAAATTAGGGGTACTTTGGTAATTTTACAA
ACGAGGGGTATTTCAA
Found at i:77296715 original size:26 final size:26
Alignment explanation
Indices: 77296551--77296718 Score: 174
Period size: 27 Copynumber: 6.3 Consensus size: 26
77296541 ACAAATTAGG
* *
77296551 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACCA-A
* * *
77296578 GGTATTTTGATAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACCA-A
* *
77296605 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACCA-A
*
77296632 GGTATTTTGGTAATTTTATAAACCAA
1 GGTATTTTGGTAATTTTACAAACCAA
* * *
77296658 GGGTATTTTAGTAATTTTACAAAGCAG
1 -GGTATTTTGGTAATTTTACAAACCAA
**
77296685 GGTATTTTGGTAATTTTGTAAACCAA
1 GGTATTTTGGTAATTTTACAAACCAA
*
77296711 AGTATTTT
1 GGTATTTT
77296719 AAACATGGAT
Statistics
Matches: 125, Mismatches: 15, Indels: 3
0.87 0.10 0.02
Matches are distributed among these distances:
26 28 0.22
27 97 0.78
ACGTcount: A:0.32, C:0.07, G:0.20, T:0.42
Consensus pattern (26 bp):
GGTATTTTGGTAATTTTACAAACCAA
Found at i:77301873 original size:40 final size:41
Alignment explanation
Indices: 77301816--77302065 Score: 318
Period size: 40 Copynumber: 6.3 Consensus size: 41
77301806 CTAACGGGGT
* * *
77301816 TAAGTCCCGAAGACATTTGTGCTAGTGATTAAT-TCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATATCCGGGC
*
77301856 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATATCCGGGC
*
77301896 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATATCCGGGC
*
77301936 TAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATATCCGGGC
* *
77301976 TAAGTCCCGAAGGCATTTGTGCTAGTGAC-CATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATATCCGGGC
* * * * *
77302016 TAAGACCCGACGGC-CTTGTGCGAGTG-GTTATATCC-GGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATATCCGGGC
*
77302054 TAAATCCCGAAG
1 TAAGTCCCGAAG
77302066 ATAATTGGGT
Statistics
Matches: 192, Mismatches: 15, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
38 12 0.06
39 18 0.09
40 162 0.84
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.26
Consensus pattern (41 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATATCCGGGC
Found at i:77307738 original size:14 final size:15
Alignment explanation
Indices: 77307714--77307759 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
77307704 CATATTTAGG
77307714 GCACTTTACATTTTA
1 GCACTTTACATTTTA
77307729 GCAC-TTACATTTTTA
1 GCACTTTACA-TTTTA
*
77307744 -CACTTTGACAATTTA
1 GCACTTT-ACATTTTA
77307759 G
1 G
77307760 TCCATTTTTC
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
14 8 0.31
15 15 0.58
16 3 0.12
ACGTcount: A:0.28, C:0.20, G:0.09, T:0.43
Consensus pattern (15 bp):
GCACTTTACATTTTA
Found at i:77313600 original size:40 final size:40
Alignment explanation
Indices: 77313499--77313726 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
77313489 TTCGAATGAT
* * * * * *
77313499 ATCCGGGCTAAGTCTCGAAGGCTTTTGTGCTAAGTGACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACCAA
*
77313540 ATCCGGGTTAAGTCCAGAAGGCATTTGTGCGAGTTACCAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAA
* *
77313580 ATCCGGGTTAATTCCCGAAGGCATTTGTGTGAGTTACCAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAA
* *
77313620 ATCCGGGTTAATTCCCGAAGGCATTTGTGCAAGTTACCAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAA
* * *
77313660 ATTCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTATA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCA-A
* * *
77313701 A-CCGAGCTATGTCCCGAAGGCATTTG
1 ATCCGGGTTAAGTCCCGAAGGCATTTG
77313727 AACGAGTAGC
Statistics
Matches: 165, Mismatches: 21, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
40 137 0.83
41 28 0.17
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (40 bp):
ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAA
Found at i:77313716 original size:120 final size:121
Alignment explanation
Indices: 77313499--77313726 Score: 309
Period size: 120 Copynumber: 1.9 Consensus size: 121
77313489 TTCGAATGAT
* * *
77313499 ATCCGGGCTAAGTCTCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTTAAGTCCAGAAGGCAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGGTTAAGTCCAGAAGGCAT
* * *
77313564 TTGTGCGAGTTACCAAATCCGGGTTAATTCCCGAAGGCATTTGTGTGAGTTACCAA
66 TTGTGCGAGTCACCAAATCCGAGCTAATTCCCGAAGGCATTTGTGTGAGTTACCAA
* * * * *
77313620 ATCCGGGTTAATTCCCGAAGGCATTTGTGC-AAGTTACCAAATTCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGGTTAAGTCCAGAAGGCAT
*
77313684 TTGTGCGAGTCACTATAA-CCGAGCT-ATGTCCCGAAGGCATTTG
66 TTGTGCGAGTCACCA-AATCCGAGCTAAT-TCCCGAAGGCATTTG
77313727 AACGAGTAGC
Statistics
Matches: 93, Mismatches: 12, Indels: 5
0.85 0.11 0.05
Matches are distributed among these distances:
119 2 0.02
120 63 0.68
121 28 0.30
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (121 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGGTTAAGTCCAGAAGGCAT
TTGTGCGAGTCACCAAATCCGAGCTAATTCCCGAAGGCATTTGTGTGAGTTACCAA
Found at i:77321782 original size:40 final size:40
Alignment explanation
Indices: 77321575--77321802 Score: 305
Period size: 40 Copynumber: 5.7 Consensus size: 40
77321565 TTCGAATGAT
* * * *
77321575 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA
*
77321616 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
* *
77321656 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACCAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
* *
77321696 ATCCGGGTTAATTCCCGAAGGCATTTGTGCAAGTTACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
* *
77321736 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCATTATA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
* * *
77321777 A-CCGGGCTATGTCCTGAAGGCATTTG
1 ATCCGGGTTAAGTCCCGAAGGCATTTG
77321803 AACGAGTAGC
Statistics
Matches: 171, Mismatches: 15, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
40 141 0.82
41 30 0.18
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (40 bp):
ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:77321796 original size:120 final size:121
Alignment explanation
Indices: 77321575--77321802 Score: 336
Period size: 120 Copynumber: 1.9 Consensus size: 121
77321565 TTCGAATGAT
*
77321575 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTTAAGTCCCGAAGGCAT
* *
77321640 TTGTGCGAGTTACCAAATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACCAA
66 TTGTGCGAGTCACCAAATCCGGGCTAATTCCCGAAGGCATTTGTGCGAGTTACCAA
* * *
77321696 ATCCGGGTTAATTCCCGAAGGCATTTGTGC-AAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTTAAGTCCCGAAGGCAT
** *
77321760 TTGTGCGAGTCATTATAA-CCGGGCT-ATGTCCTGAAGGCATTTG
66 TTGTGCGAGTCACCA-AATCCGGGCTAAT-TCCCGAAGGCATTTG
77321803 AACGAGTAGC
Statistics
Matches: 96, Mismatches: 9, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
119 2 0.02
120 65 0.68
121 29 0.30
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (121 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTTAAGTCCCGAAGGCAT
TTGTGCGAGTCACCAAATCCGGGCTAATTCCCGAAGGCATTTGTGCGAGTTACCAA
Found at i:77321820 original size:120 final size:121
Alignment explanation
Indices: 77321573--77321835 Score: 331
Period size: 120 Copynumber: 2.2 Consensus size: 121
77321563 TATTCGAATG
* * *
77321573 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTTAAGTCCCGAAGGC
1 ATATCCGGGTTAATTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTTAAGTCCCGAAGGC
* * **
77321638 ATTTGTGCGAGTTACCAAATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACC
66 ATTTGTGCGAGTCACCAAATCCGGGCTAATTCCCGAAGGCATTTGAACGAGTTACC
* *
77321694 AAATCCGGGTTAATTCCCGAAGGCATTTGTGC-AAGTTACTAAATCCGGGTTAAGTCCCGAAGGC
1 ATATCCGGGTTAATTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTTAAGTCCCGAAGGC
** * *
77321758 ATTTGTGCGAGTCATTATAA-CCGGGCT-ATGTCCTGAAGGCATTTGAACGAG-TAGCT
66 ATTTGTGCGAGTCACCA-AATCCGGGCTAAT-TCCCGAAGGCATTTGAACGAGTTA-CC
77321814 ATATCC-GGTTAAATT-CCGAAGG
1 ATATCCGGGTT-AATTCCCGAAGG
77321836 TACGTGATTC
Statistics
Matches: 124, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
119 15 0.12
120 79 0.64
121 30 0.24
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (121 bp):
ATATCCGGGTTAATTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTTAAGTCCCGAAGGC
ATTTGTGCGAGTCACCAAATCCGGGCTAATTCCCGAAGGCATTTGAACGAGTTACC
Found at i:77325922 original size:20 final size:20
Alignment explanation
Indices: 77325897--77325938 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
77325887 TTATAGGTAG
* *
77325897 AAATTTTTCAATTGATTTTA
1 AAATTTTTCAATCGAGTTTA
*
77325917 AAATTTTTTAATCGAGTTTA
1 AAATTTTTCAATCGAGTTTA
77325937 AA
1 AA
77325939 CAGTTTAAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.38, C:0.05, G:0.07, T:0.50
Consensus pattern (20 bp):
AAATTTTTCAATCGAGTTTA
Found at i:77327354 original size:13 final size:13
Alignment explanation
Indices: 77327336--77327364 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
77327326 ATTTGTCAAG
77327336 TGAGTCCCTAGAC
1 TGAGTCCCTAGAC
77327349 TGAGTCCCTAGAC
1 TGAGTCCCTAGAC
77327362 TGA
1 TGA
77327365 CTCATACATG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (13 bp):
TGAGTCCCTAGAC
Found at i:77327957 original size:61 final size:61
Alignment explanation
Indices: 77327858--77328063 Score: 168
Period size: 61 Copynumber: 3.4 Consensus size: 61
77327848 ACTAGGAAAG
** ** *
77327858 GGAAAGCCTTTGTGGTGAGT-CTTAGATGTTAAGGAATGCCTTTATGACACAACTCTGGACA
1 GGAAAGCCTTTGTGGCAAGTAC-TAGATAATAAGAAATGCCTTTATGACACAACTCTGGACA
* * * * * * *
77327919 GGAAAGTCTTTTTGGTGAA-TACTAGATATTAATAAATGCCTTTGT-AGCACAACTTTGGACA
1 GGAAAGCCTTTGTGG-CAAGTACTAGATAATAAGAAATGCCTTTATGA-CACAACTCTGGACA
* * * * **
77327980 TGAAAGCCTTTGTGGCAAGTACTGGATAATAAGGAATGCCTTTATGGCACAACTCTAAAC-
1 GGAAAGCCTTTGTGGCAAGTACTAGATAATAAGAAATGCCTTTATGACACAACTCTGGACA
* *
77328040 GAGAAAGCCTTTATGGCGAGTACT
1 G-GAAAGCCTTTGTGGCAAGTACT
77328064 TAATGAAAAA
Statistics
Matches: 114, Mismatches: 25, Indels: 12
0.75 0.17 0.08
Matches are distributed among these distances:
60 3 0.03
61 109 0.96
62 2 0.02
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (61 bp):
GGAAAGCCTTTGTGGCAAGTACTAGATAATAAGAAATGCCTTTATGACACAACTCTGGACA
Found at i:77331321 original size:18 final size:17
Alignment explanation
Indices: 77331300--77331337 Score: 58
Period size: 18 Copynumber: 2.2 Consensus size: 17
77331290 AACTAAAACC
77331300 AAAAATAAAAAGAAAAAG
1 AAAAATAAAAAG-AAAAG
*
77331318 AAAACTAAAAAGAAAAG
1 AAAAATAAAAAGAAAAG
77331335 AAA
1 AAA
77331338 TAAAATCATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 8 0.42
18 11 0.58
ACGTcount: A:0.82, C:0.03, G:0.11, T:0.05
Consensus pattern (17 bp):
AAAAATAAAAAGAAAAG
Found at i:77338186 original size:40 final size:40
Alignment explanation
Indices: 77338150--77338246 Score: 140
Period size: 40 Copynumber: 2.4 Consensus size: 40
77338140 CGGCTATTTG
77338150 TGGCACTTAGTGTGCGATTCGACATAGCTTCAGCTATATA
1 TGGCACTTAGTGTGCGATTCGACATAGCTTCAGCTATATA
* * * *
77338190 TGGCACTTAGTGTGCGATTTGAGATAGCTTCGGCTATGTA
1 TGGCACTTAGTGTGCGATTCGACATAGCTTCAGCTATATA
* *
77338230 CGACACTTAGTGTGCGA
1 TGGCACTTAGTGTGCGA
77338247 GGCATTGAAT
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 51 1.00
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.32
Consensus pattern (40 bp):
TGGCACTTAGTGTGCGATTCGACATAGCTTCAGCTATATA
Found at i:77343248 original size:29 final size:29
Alignment explanation
Indices: 77343215--77343317 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
77343205 GTGACGAGAT
77343215 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
77343244 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
77343273 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
77343302 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
77343318 AGCTCGGAGG
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 65 1.00
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Done.