Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 246 of 318
Found at i:77352162 original size:66 final size:68
Alignment explanation
Indices: 77352084--77352270 Score: 272
Period size: 71 Copynumber: 2.7 Consensus size: 68
77352074 TAGTACCACT
*
77352084 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAAT
77352146 CACG
65 CACG
*
77352150 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGA
77352215 ATCACG
63 ATCACG
77352221 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
77352271 GATACATCTC
Statistics
Matches: 113, Mismatches: 2, Indels: 7
0.93 0.02 0.06
Matches are distributed among these distances:
66 13 0.12
67 6 0.05
68 1 0.01
69 1 0.01
71 92 0.81
ACGTcount: A:0.19, C:0.28, G:0.19, T:0.34
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATC
ACG
Found at i:77352195 original size:71 final size:71
Alignment explanation
Indices: 77352107--77352270 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
77352097 CGATTTGTCT
77352107 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
77352172 CTTTCA
66 CTTTCA
*
77352178 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
77352243 CTTTCA
66 CTTTCA
77352249 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
77352271 GATACATCTC
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 92 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:77352308 original size:71 final size:70
Alignment explanation
Indices: 77352107--77352304 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
77352097 CGATTTGTCT
* * * *
77352107 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
77352172 CTTTCA
65 CTTTCA
* * * *
77352178 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
77352243 CTTTCA
65 CTTTCA
* *
77352249 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
77352305 TACAGGGTGT
Statistics
Matches: 119, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 95 0.80
ACGTcount: A:0.21, C:0.28, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:77353600 original size:9 final size:9
Alignment explanation
Indices: 77353586--77353610 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
77353576 CACTACTTCA
77353586 GCTTATCAT
1 GCTTATCAT
77353595 GCTTATCAT
1 GCTTATCAT
77353604 GCTTATC
1 GCTTATC
77353611 TCATTACATC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.20, C:0.24, G:0.12, T:0.44
Consensus pattern (9 bp):
GCTTATCAT
Found at i:77353786 original size:24 final size:24
Alignment explanation
Indices: 77353758--77353806 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
77353748 TAAACAATGA
77353758 ATTTGTTTAATCATTTCGAACATC
1 ATTTGTTTAATCATTTCGAACATC
77353782 ATTTGTTTAATCATTTCGAACATC
1 ATTTGTTTAATCATTTCGAACATC
77353806 A
1 A
77353807 AAGCCTTTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.31, C:0.16, G:0.08, T:0.45
Consensus pattern (24 bp):
ATTTGTTTAATCATTTCGAACATC
Found at i:77367347 original size:28 final size:28
Alignment explanation
Indices: 77367307--77367370 Score: 92
Period size: 28 Copynumber: 2.3 Consensus size: 28
77367297 TGGGAAGTAG
* * *
77367307 TTGGGCCTGATGGGCCATATGAATGTGA
1 TTGGGCCTGATGGACCATATGAACGAGA
*
77367335 TTGGGCCTGATGGACCATGTGAACGAGA
1 TTGGGCCTGATGGACCATATGAACGAGA
77367363 TTGGGCCT
1 TTGGGCCT
77367371 AAAGGGGCCA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.20, C:0.17, G:0.36, T:0.27
Consensus pattern (28 bp):
TTGGGCCTGATGGACCATATGAACGAGA
Found at i:77368134 original size:27 final size:27
Alignment explanation
Indices: 77367695--77368133 Score: 508
Period size: 27 Copynumber: 16.3 Consensus size: 27
77367685 AGAAATTATT
* *
77367695 GAAATACTCTCGATTTGTAAAATTATC
1 GAAATACCCTCGATTTGTAAAATTACC
* * **
77367722 AAAATATCCC-CAATTTGTAAAATTGTC
1 GAAATA-CCCTCGATTTGTAAAATTACC
*
77367749 GAAATACCCTCGA-TTGTAAAATTACT
1 GAAATACCCTCGATTTGTAAAATTACC
77367775 GAAATACCCTCGATTTGTAAAATTACC
1 GAAATACCCTCGATTTGTAAAATTACC
* * *
77367802 GAAATACCCCCGATTTTTGAAATTACC
1 GAAATACCCTCGATTTGTAAAATTACC
* ** *
77367829 GAAACATGCTTGATTTGTAAAATTACC
1 GAAATACCCTCGATTTGTAAAATTACC
* * *
77367856 AAAATACCCTTGATTTGTAAAATTACT
1 GAAATACCCTCGATTTGTAAAATTACC
* *
77367883 GAAATACCTTCGA-TTGTGAAATTA-C
1 GAAATACCCTCGATTTGTAAAATTACC
* *
77367908 TAAAGTACCCTCAATTTGTAAAATTACC
1 GAAA-TACCCTCGATTTGTAAAATTACC
* * *
77367936 AAAATACCCTCAATTTGTGAAATTACC
1 GAAATACCCTCGATTTGTAAAATTACC
*
77367963 GAAACACCCTCGATTTGTAAAATTACC
1 GAAATACCCTCGATTTGTAAAATTACC
* *
77367990 GAAACACCCTCAATTTGTAAAATTACC
1 GAAATACCCTCGATTTGTAAAATTACC
*
77368017 GAAACACCCTCGATTTGTAAAATTACC
1 GAAATACCCTCGATTTGTAAAATTACC
* *
77368044 GAAACACCTTCGATTTGTAAAATTACC
1 GAAATACCCTCGATTTGTAAAATTACC
* *
77368071 AAAATACCCTCGATTTGTAAAATTATC
1 GAAATACCCTCGATTTGTAAAATTACC
* * *
77368098 GAAATACCCCCGATTTATAAAATTATC
1 GAAATACCCTCGATTTGTAAAATTACC
*
77368125 AAAATACCC
1 GAAATACCC
77368134 CTGTAGTGTA
Statistics
Matches: 355, Mismatches: 51, Indels: 12
0.85 0.12 0.03
Matches are distributed among these distances:
25 3 0.01
26 43 0.12
27 303 0.85
28 6 0.02
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.31
Consensus pattern (27 bp):
GAAATACCCTCGATTTGTAAAATTACC
Found at i:77372919 original size:40 final size:40
Alignment explanation
Indices: 77372853--77372996 Score: 150
Period size: 40 Copynumber: 3.6 Consensus size: 40
77372843 AAATTGAATG
* * *
77372853 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
77372892 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
77372932 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
*
77372972 CTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
77372997 TTCGTGCACG
Statistics
Matches: 85, Mismatches: 16, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
39 16 0.19
40 69 0.81
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.21
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:77373017 original size:40 final size:40
Alignment explanation
Indices: 77372890--77373019 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
77372880 ATGCTGGAAA
* *
77372890 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
77372930 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
77372970 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
77373010 TTATATCCGG
1 TTATATCCGG
77373020 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:77381068 original size:40 final size:40
Alignment explanation
Indices: 77380941--77381070 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
77380931 ATGCTGGAAA
* *
77380941 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
77380981 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
77381021 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
77381061 TTATATCCGG
1 TTATATCCGG
77381071 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:77386377 original size:14 final size:14
Alignment explanation
Indices: 77386358--77386385 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
77386348 CCATCTCTAC
77386358 TTAACACTATCCTA
1 TTAACACTATCCTA
77386372 TTAACACTATCCTA
1 TTAACACTATCCTA
77386386 AAATTAGTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.29, G:0.00, T:0.36
Consensus pattern (14 bp):
TTAACACTATCCTA
Found at i:77392967 original size:18 final size:17
Alignment explanation
Indices: 77392936--77392986 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
77392926 TTGGACAAAA
*
77392936 ATTTTAATATTTTTTTT
1 ATTTTAATAATTTTTTT
77392953 ATTTTGAATAATTTTTTT
1 ATTTT-AATAATTTTTTT
***
77392971 AAAATAATAATTTTTT
1 ATTTTAATAATTTTTT
77392987 CTTTAATAAG
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
17 16 0.55
18 13 0.45
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (17 bp):
ATTTTAATAATTTTTTT
Found at i:77395838 original size:50 final size:50
Alignment explanation
Indices: 77395763--77395865 Score: 206
Period size: 50 Copynumber: 2.1 Consensus size: 50
77395753 TGCCATTGAC
77395763 ATAATAAAAGGGTTATACAAACTTCGGTTAAGTCAATTGCTGATGTCCGG
1 ATAATAAAAGGGTTATACAAACTTCGGTTAAGTCAATTGCTGATGTCCGG
77395813 ATAATAAAAGGGTTATACAAACTTCGGTTAAGTCAATTGCTGATGTCCGG
1 ATAATAAAAGGGTTATACAAACTTCGGTTAAGTCAATTGCTGATGTCCGG
77395863 ATA
1 ATA
77395866 TTGACTTCAC
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 53 1.00
ACGTcount: A:0.35, C:0.14, G:0.21, T:0.30
Consensus pattern (50 bp):
ATAATAAAAGGGTTATACAAACTTCGGTTAAGTCAATTGCTGATGTCCGG
Found at i:77398013 original size:12 final size:12
Alignment explanation
Indices: 77397996--77398020 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
77397986 TTGTTAAAAG
77397996 TTAACGTGTTAT
1 TTAACGTGTTAT
77398008 TTAACGTGTTAT
1 TTAACGTGTTAT
77398020 T
1 T
77398021 GGAATAATCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.08, G:0.16, T:0.52
Consensus pattern (12 bp):
TTAACGTGTTAT
Found at i:77411072 original size:12 final size:12
Alignment explanation
Indices: 77411055--77411088 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
77411045 CGGCCTGTCC
77411055 ATATTAATTTTT
1 ATATTAATTTTT
*
77411067 ATATTATTTTTT
1 ATATTAATTTTT
77411079 ATA-TAATTTT
1 ATATTAATTTT
77411089 AAATTATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 6 0.30
12 14 0.70
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:77412314 original size:14 final size:15
Alignment explanation
Indices: 77412295--77412323 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
77412285 TTAGTATAAT
77412295 TAAATA-TTAAAAAA
1 TAAATATTTAAAAAA
77412309 TAAATATTTAAAAAA
1 TAAATATTTAAAAAA
77412324 AAAGGTACAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (15 bp):
TAAATATTTAAAAAA
Found at i:77413086 original size:23 final size:22
Alignment explanation
Indices: 77413060--77413108 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
77413050 ACTTTTTAAA
* *
77413060 ATTTTTATCATTTTTATTTATTT
1 ATTTTTAT-AATTATATTTATTT
77413083 ATTTTTATAATTATATTTATTT
1 ATTTTTATAATTATATTTATTT
77413105 -TTTT
1 ATTTT
77413109 CTCATCAACT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 4 0.17
22 12 0.50
23 8 0.33
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.73
Consensus pattern (22 bp):
ATTTTTATAATTATATTTATTT
Found at i:77413207 original size:15 final size:14
Alignment explanation
Indices: 77413173--77413207 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
77413163 TTAAATCATG
77413173 TTTTTTATTTAATC
1 TTTTTTATTTAATC
*
77413187 TCTTTTGATTTAATC
1 T-TTTTTATTTAATC
77413202 TTTTTT
1 TTTTTT
77413208 TTTCTTTTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
14 5 0.28
15 13 0.72
ACGTcount: A:0.17, C:0.09, G:0.03, T:0.71
Consensus pattern (14 bp):
TTTTTTATTTAATC
Found at i:77414429 original size:52 final size:52
Alignment explanation
Indices: 77414371--77414479 Score: 166
Period size: 52 Copynumber: 2.1 Consensus size: 52
77414361 TCGTTAATCC
*
77414371 CTATTCATTCAAT-TAGAGGTAAATTCAAGAGGGCAAATCATATATGATGAAA
1 CTATTCATTC-ATCTAGAAGTAAATTCAAGAGGGCAAATCATATATGATGAAA
* * *
77414423 CTATTCATTCATCTAGAAGTGAATTTAAGAGGGCAAGTCATATATGATGAAA
1 CTATTCATTCATCTAGAAGTAAATTCAAGAGGGCAAATCATATATGATGAAA
77414475 CTATT
1 CTATT
77414480 AGTTAATACA
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
51 2 0.04
52 50 0.96
ACGTcount: A:0.39, C:0.12, G:0.17, T:0.31
Consensus pattern (52 bp):
CTATTCATTCATCTAGAAGTAAATTCAAGAGGGCAAATCATATATGATGAAA
Found at i:77414685 original size:2 final size:2
Alignment explanation
Indices: 77414678--77414753 Score: 152
Period size: 2 Copynumber: 38.0 Consensus size: 2
77414668 ATAATTATCC
77414678 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
77414720 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
77414754 CATTTAATAC
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 74 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:77423742 original size:44 final size:43
Alignment explanation
Indices: 77423677--77423766 Score: 153
Period size: 44 Copynumber: 2.1 Consensus size: 43
77423667 ACATGTATTG
* *
77423677 CATCCATAATGAACTCGGACCAACTCAACGAGCTCAGATGCTCA
1 CATCCATAACGAACTCAGACCAACTCAACGAGCTCAGATGC-CA
77423721 CATCCATAACGAACTCAGACCAACTCAACGAGCTCAGATGCCA
1 CATCCATAACGAACTCAGACCAACTCAACGAGCTCAGATGCCA
77423764 CAT
1 CAT
77423767 ATATCATGAA
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
43 5 0.11
44 39 0.89
ACGTcount: A:0.36, C:0.33, G:0.14, T:0.17
Consensus pattern (43 bp):
CATCCATAACGAACTCAGACCAACTCAACGAGCTCAGATGCCA
Found at i:77428798 original size:48 final size:48
Alignment explanation
Indices: 77428726--77428959 Score: 247
Period size: 48 Copynumber: 4.9 Consensus size: 48
77428716 GGCATTTGGG
* * ** *
77428726 TGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGTGTCAGCCA
1 TGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA
* * * * *
77428774 CGATATGAGAGCCAGTGTAAGACCATGTTTGGAAAATGGCATCGGCGA
1 TGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA
* * * * *
77428822 TGTTATGAGAGCTAGTGTAAGACTATGTTTGGGACATGAG-ATC-GACA
1 TGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATG-GCATCGGCCA
* * * *
77428869 TTAATATGTGTGCGAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA
1 -TGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA
* *
77428918 TAACATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCAT
1 TGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCAT
77428960 GTGACAGCCC
Statistics
Matches: 152, Mismatches: 30, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
47 3 0.02
48 145 0.95
49 4 0.03
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.25
Consensus pattern (48 bp):
TGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA
Found at i:77430738 original size:40 final size:40
Alignment explanation
Indices: 77430655--77430874 Score: 200
Period size: 40 Copynumber: 5.5 Consensus size: 40
77430645 TATTCAAATG
* * *
77430655 ATATCCGGGCTAAG-TCCGAAGGCTTTTGTGCTAAGTGATT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGC-GAGTGACT
* *
77430695 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCGAGTGACT
* * * *
77430735 ATATCCGGG-TCAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCT-AAGATCCGAAGGCATTTGTGCGAGTGACT
* * * * *
77430775 ATATTCGGGCTAAG-TCCCGAAGGCATTTATGCTAGCGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCGAGTGACT
* * **
77430815 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCGAGTGGTT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCGAGTGACT
77430854 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGAT-CCGAAG
77430875 ATACTTGGGT
Statistics
Matches: 148, Mismatches: 26, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
37 1 0.01
38 12 0.08
39 15 0.10
40 103 0.70
41 17 0.11
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCGAGTGACT
Found at i:77438815 original size:40 final size:40
Alignment explanation
Indices: 77438714--77438934 Score: 223
Period size: 40 Copynumber: 5.5 Consensus size: 40
77438704 TATTCAAATG
* * * *
77438714 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-GAGTGACT
* * *
77438755 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* * ** *
77438795 ATATCCGGGCCAAAACCCGAAGGCATTTGTGCTTGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* * * * *
77438835 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGCGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* **
77438875 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCGAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
77438914 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
77438935 ATACTTGGCT
Statistics
Matches: 150, Mismatches: 29, Indels: 5
0.82 0.16 0.03
Matches are distributed among these distances:
37 1 0.01
38 13 0.09
39 14 0.09
40 94 0.63
41 28 0.19
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
Found at i:77439740 original size:19 final size:19
Alignment explanation
Indices: 77439708--77439744 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
77439698 AGGTATTGTG
77439708 GAAAGTTTCAAACTAGGAT
1 GAAAGTTTCAAACTAGGAT
77439727 GAAA-TTTCATAACTAGGA
1 GAAAGTTTCA-AACTAGGA
77439745 AATGTATGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.43, C:0.11, G:0.19, T:0.27
Consensus pattern (19 bp):
GAAAGTTTCAAACTAGGAT
Found at i:77439944 original size:46 final size:46
Alignment explanation
Indices: 77439877--77439974 Score: 169
Period size: 46 Copynumber: 2.1 Consensus size: 46
77439867 ATGGTAGAAA
** *
77439877 ATGAAAGGTTGTTGATAGATAAACAACTTTTACAAAGAGAATTTTT
1 ATGAAAGGTTCATGATAGATAAACAACTTTTACAAAGAGAATTTTG
77439923 ATGAAAGGTTCATGATAGATAAACAACTTTTACAAAGAGAATTTTG
1 ATGAAAGGTTCATGATAGATAAACAACTTTTACAAAGAGAATTTTG
77439969 ATGAAA
1 ATGAAA
77439975 TCATGATTTA
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 49 1.00
ACGTcount: A:0.44, C:0.07, G:0.17, T:0.32
Consensus pattern (46 bp):
ATGAAAGGTTCATGATAGATAAACAACTTTTACAAAGAGAATTTTG
Found at i:77441838 original size:39 final size:39
Alignment explanation
Indices: 77441787--77441864 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
77441777 TAATAAAAGT
77441787 GTGATTTAGTGAAAATTTTGGGCTACTATAGTTATGAAA
1 GTGATTTAGTGAAAATTTTGGGCTACTATAGTTATGAAA
77441826 GTGATTTAGTGAAAATTTTGGGCTACTATAGTTATGAAA
1 GTGATTTAGTGAAAATTTTGGGCTACTATAGTTATGAAA
77441865 ATAATTCAGC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.33, C:0.05, G:0.23, T:0.38
Consensus pattern (39 bp):
GTGATTTAGTGAAAATTTTGGGCTACTATAGTTATGAAA
Found at i:77455322 original size:15 final size:14
Alignment explanation
Indices: 77455302--77455364 Score: 58
Period size: 15 Copynumber: 4.4 Consensus size: 14
77455292 TACGGTATCG
77455302 TATATTGGATTTCT
1 TATATTGGATTTCT
77455316 ATATATTGGATTTCT
1 -TATATTGGATTTCT
*
77455331 TCATCTTGGATTT-T
1 T-ATATTGGATTTCT
* *
77455345 CTGTCTTGGATTTCT
1 -TATATTGGATTTCT
77455360 T-TATT
1 TATATT
77455365 TTGGTCTTCT
Statistics
Matches: 42, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
13 3 0.07
14 13 0.31
15 26 0.62
ACGTcount: A:0.17, C:0.11, G:0.14, T:0.57
Consensus pattern (14 bp):
TATATTGGATTTCT
Found at i:77457696 original size:30 final size:29
Alignment explanation
Indices: 77457660--77457716 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 29
77457650 TTACGAGCCT
* *
77457660 AGGGGTAAAAGTGTAAATATGATAAAGTTA
1 AGGGGTAAAAATGCAAATATGA-AAAGTTA
*
77457690 AGGGGTAAAAATGCAAATTTGAAAAGT
1 AGGGGTAAAAATGCAAATATGAAAAGT
77457717 ATGATTTTTG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.47, C:0.02, G:0.26, T:0.25
Consensus pattern (29 bp):
AGGGGTAAAAATGCAAATATGAAAAGTTA
Found at i:77458303 original size:44 final size:44
Alignment explanation
Indices: 77458248--77458331 Score: 150
Period size: 44 Copynumber: 1.9 Consensus size: 44
77458238 TATGTATAAG
* *
77458248 GCATCTGAGCTCGTTGAGTTGGTCTAAGTTCATTATGGATACGA
1 GCATCCGAGCTCGTTGAGTTGGTCCAAGTTCATTATGGATACGA
77458292 GCATCCGAGCTCGTTGAGTTGGTCCAAGTTCATTATGGAT
1 GCATCCGAGCTCGTTGAGTTGGTCCAAGTTCATTATGGAT
77458332 GCGATACATG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 38 1.00
ACGTcount: A:0.21, C:0.18, G:0.27, T:0.33
Consensus pattern (44 bp):
GCATCCGAGCTCGTTGAGTTGGTCCAAGTTCATTATGGATACGA
Found at i:77464859 original size:47 final size:49
Alignment explanation
Indices: 77464743--77464922 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 49
77464733 TGTAACCCGC
* * * *
77464743 CCATAAGCGAACTCAGACTCAACTCAACGAGCTCGGGTG---TTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
*
77464789 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACAT
* *
77464839 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
*
77464882 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC
77464923 CAAATATCCC
Statistics
Matches: 112, Mismatches: 10, Indels: 21
0.78 0.07 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (49 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
Found at i:77464863 original size:93 final size:93
Alignment explanation
Indices: 77464750--77464922 Score: 301
Period size: 93 Copynumber: 1.9 Consensus size: 93
77464740 CGCCCATAAG
***
77464750 CGAACTCAGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
77464815 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
77464843 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
77464908 ACGAGTTCGGATGCC
66 ACGAGTTCGGATGCC
77464923 CAAATATCCC
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:77470292 original size:41 final size:41
Alignment explanation
Indices: 77470230--77470318 Score: 126
Period size: 41 Copynumber: 2.2 Consensus size: 41
77470220 AAGTTTTTGT
** * *
77470230 ACACGGG-CTAAGACATGGGCGTGTCCTGGTCGTGTGAAGG
1 ACACGGGCCTAAGACACAGGCGTGTCCTGGCCATGTGAAGG
*
77470270 ACACGGGCCTGAGACACAGGCGTGTCCTGGCCATGTGAAGG
1 ACACGGGCCTAAGACACAGGCGTGTCCTGGCCATGTGAAGG
77470311 ACACGGGC
1 ACACGGGC
77470319 GTGTTTCAGG
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
40 7 0.16
41 36 0.84
ACGTcount: A:0.21, C:0.25, G:0.38, T:0.16
Consensus pattern (41 bp):
ACACGGGCCTAAGACACAGGCGTGTCCTGGCCATGTGAAGG
Found at i:77471624 original size:21 final size:21
Alignment explanation
Indices: 77471600--77471673 Score: 112
Period size: 21 Copynumber: 3.5 Consensus size: 21
77471590 CAACCTACAG
*
77471600 CACGAGTGTGTCCCTTGACCA
1 CACGAGCGTGTCCCTTGACCA
*
77471621 CACGGGCGTGTCCCTTGACCA
1 CACGAGCGTGTCCCTTGACCA
* *
77471642 CACGGGCGTGTCCTTTGACCA
1 CACGAGCGTGTCCCTTGACCA
77471663 CACGAGCGTGT
1 CACGAGCGTGT
77471674 GTACCCTGCA
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 49 1.00
ACGTcount: A:0.16, C:0.34, G:0.28, T:0.22
Consensus pattern (21 bp):
CACGAGCGTGTCCCTTGACCA
Found at i:77479327 original size:3 final size:3
Alignment explanation
Indices: 77479319--77479355 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
77479309 ATTTTCAGGC
77479319 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
77479356 ACATATTAAC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:77491718 original size:43 final size:43
Alignment explanation
Indices: 77491671--77491802 Score: 117
Period size: 43 Copynumber: 3.1 Consensus size: 43
77491661 CCTCGATTGA
* *
77491671 GATTTACATATAAGACCATGTTTGGGACATCAGCATTGTATTT
1 GATTTACATGTAAGACCATGTCTGGGACATCAGCATTGTATTT
* * * * *
77491714 GATTT-CGTGTAAGACCCTGTCTGGGATA-GAGGCATCG-ATATT
1 GATTTACATGTAAGACCATGTCTGGGACATCA-GCATTGTAT-TT
* ** * *
77491756 GAATTACATGTAAGACCACATCTGGGACATCGGCATTGTACTT
1 GATTTACATGTAAGACCATGTCTGGGACATCAGCATTGTATTT
77491799 GATT
1 GATT
77491803 ATGAGCATTT
Statistics
Matches: 66, Mismatches: 18, Indels: 10
0.70 0.19 0.11
Matches are distributed among these distances:
41 3 0.05
42 29 0.44
43 33 0.50
44 1 0.02
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.33
Consensus pattern (43 bp):
GATTTACATGTAAGACCATGTCTGGGACATCAGCATTGTATTT
Found at i:77510116 original size:27 final size:27
Alignment explanation
Indices: 77510067--77510130 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
77510057 TGGAGGAAGT
*
77510067 ACTG-TACTGGTGACTATGTCACATTC
1 ACTGTTACTGGTGACTATGCCACATTC
* * *
77510093 ACTGTTACTGGTGGCTTTGCCACATTT
1 ACTGTTACTGGTGACTATGCCACATTC
*
77510120 ACTGTTTCTGG
1 ACTGTTACTGG
77510131 CAGCTATGCT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 4 0.12
27 28 0.88
ACGTcount: A:0.17, C:0.22, G:0.22, T:0.39
Consensus pattern (27 bp):
ACTGTTACTGGTGACTATGCCACATTC
Found at i:77510317 original size:28 final size:27
Alignment explanation
Indices: 77510281--77510394 Score: 86
Period size: 28 Copynumber: 4.0 Consensus size: 27
77510271 ATTACACTGT
* *
77510281 ACTGATACTGCATTGGGCTTAGGCCCAC
1 ACTGCTACTG-ATTGGGCTTAGGCCCAG
* * *
77510309 ACTGCTACTGTATAGGGCTAAGGCCTAG
1 ACTGCTACTG-ATTGGGCTTAGGCCCAG
*
77510337 ACTGC-ACTGATACTGAATGGCTCAGGCCCAG
1 ACTGCTACTGAT--TG---GGCTTAGGCCCAG
*
77510368 ACTGTTACTGATTTGGGCTTAGGCCCA
1 ACTGCTACTGA-TTGGGCTTAGGCCCA
77510395 TACCGTGTTA
Statistics
Matches: 68, Mismatches: 11, Indels: 14
0.73 0.12 0.15
Matches are distributed among these distances:
26 2 0.03
27 4 0.06
28 39 0.57
31 17 0.25
32 5 0.07
33 1 0.01
ACGTcount: A:0.23, C:0.25, G:0.26, T:0.25
Consensus pattern (27 bp):
ACTGCTACTGATTGGGCTTAGGCCCAG
Found at i:77516587 original size:48 final size:48
Alignment explanation
Indices: 77516535--77516673 Score: 161
Period size: 48 Copynumber: 2.9 Consensus size: 48
77516525 TATACGGGAT
* * *
77516535 CACATATTGGTGTCGGTGCCATGTCCTAGACATGGTCTTACACTAGCA
1 CACATATCGGTGTCGATGCCATGTCCCAGACATGGTCTTACACTAGCA
*** * * *
77516583 CACATATCAACGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT
1 CACATATCGGTGTCGATGCCATGTCCCAGACATGGTCTTACACTAGCA
* * *
77516631 CTCATCTCGGATGTCGATGCCATGTCCCATACATGGTCTTACA
1 CACATATCGG-TGTCGATGCCATGTCCCAGACATGGTCTTACA
77516674 TGGGATCTCA
Statistics
Matches: 74, Mismatches: 16, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
48 45 0.61
49 29 0.39
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.27
Consensus pattern (48 bp):
CACATATCGGTGTCGATGCCATGTCCCAGACATGGTCTTACACTAGCA
Found at i:77521246 original size:22 final size:22
Alignment explanation
Indices: 77521221--77521264 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
77521211 ATAAGTATAA
77521221 TCATATAATGATGTCTTTCATG
1 TCATATAATGATGTCTTTCATG
77521243 TCATATAATGATGTCTTTCATG
1 TCATATAATGATGTCTTTCATG
77521265 AATGATGTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.27, C:0.14, G:0.14, T:0.45
Consensus pattern (22 bp):
TCATATAATGATGTCTTTCATG
Found at i:77525095 original size:90 final size:88
Alignment explanation
Indices: 77524931--77525190 Score: 264
Period size: 90 Copynumber: 3.0 Consensus size: 88
77524921 TAGGATTTCA
* * * *
77524931 ATATATGTTTTCGTGTAAGACTACGTATGGGACGTTGGCATCAATATATGTGTTTTCATGTAAAA
1 ATAT-TGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGATATATGTGTTTACATGTAAAA
*
77524996 CCACATCTGGGACGTTGGCATCGAT
65 CCACATCTGGGACATTGGCATCG-T
* *
77525021 ATATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGATATATGTAG-TTACGTGTAAG
1 ATAT-TGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGATATATGT-GTTTACATGTAAA
**
77525085 ACCATGTCTGGGACATTGGCATCGT
64 ACCACATCTGGGACATTGGCATCGT
* * * * * *
77525110 AT-TTGATTT-GTGTGAGACC-CTGTCTGGGACAG-TGGCATCG--ATATGCGATGACATGTAAG
1 ATATTGTTTTCGTGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATATGTGTTTACATGTAAA
* *
77525169 ACCACATCTGGAACGTTGGCAT
64 ACCACATCTGGGACATTGGCAT
77525191 TGTTTGATAT
Statistics
Matches: 147, Mismatches: 19, Indels: 14
0.82 0.11 0.08
Matches are distributed among these distances:
83 1 0.01
84 32 0.22
85 1 0.01
86 26 0.18
87 6 0.04
88 1 0.01
89 3 0.02
90 76 0.52
91 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.32
Consensus pattern (88 bp):
ATATTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGATATATGTGTTTACATGTAAAAC
CACATCTGGGACATTGGCATCGT
Found at i:77525108 original size:45 final size:45
Alignment explanation
Indices: 77524931--77525153 Score: 262
Period size: 45 Copynumber: 5.0 Consensus size: 45
77524921 TAGGATTTCA
* * * *
77524931 ATATATGTTTTCGTGTAAGACTACGTATGGGACGTTGGCATCAAT
1 ATATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
* * *
77524976 ATATGTGTTTTCATGTAAAACCACATCTGGGACGTTGGCATCGAT
1 ATATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
77525021 ATATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
1 ATATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
* * *
77525066 ATATGTAG-TTACGTGTAAGACCATGTCTGGGACATTGGCATCG-T
1 ATATGT-GTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
* *
77525110 AT-T-TGATTT-GTGTGAGACC-CTGTCTGGGACAG-TGGCATCGAT
1 ATATGTGTTTTCGTGTAAGACCAC-GTCTGGGAC-GTTGGCATCGAT
77525152 AT
1 AT
77525154 GCGATGACAT
Statistics
Matches: 156, Mismatches: 17, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
41 27 0.17
42 6 0.04
43 1 0.01
44 3 0.02
45 118 0.76
46 1 0.01
ACGTcount: A:0.24, C:0.16, G:0.26, T:0.34
Consensus pattern (45 bp):
ATATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
Found at i:77528125 original size:17 final size:18
Alignment explanation
Indices: 77528103--77528136 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
77528093 AAAATTGGCC
77528103 GTGTGGGCC-ACACGGGT
1 GTGTGGGCCGACACGGGT
77528120 GTGTGGGCCGACACGGG
1 GTGTGGGCCGACACGGG
77528137 CAAGCCACAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.12, C:0.24, G:0.50, T:0.15
Consensus pattern (18 bp):
GTGTGGGCCGACACGGGT
Found at i:77529906 original size:47 final size:44
Alignment explanation
Indices: 77529757--77530111 Score: 229
Period size: 47 Copynumber: 7.6 Consensus size: 44
77529747 TTGCCGATGC
* *
77529757 CATGTCCCAGACATGGTCTTACACTGGC--TCTCATATACGCGTGATGA
1 CATGTCCCAGACAT-GTCTTACACTGGCTATCTC-TGTA-GC-CGAT-A
* * * *
77529804 TGCATGTCCCAGACATGTCTTACACTAGCACAACTCT-TAGCCGATT
1 --CATGTCCCAGACATGTCTTACACTGGC-TATCTCTGTAGCCGATA
*
77529850 CATGTCCCAGACACGTCTTACACTGGCTATCTCTGTCGAGGCCGATA
1 CATGTCCCAGACATGTCTTACACTGGCTATCTCTGT--A-GCCGATA
*
77529897 CATGTCCCAGACATGTCTTACACTGGCACTCATCTCTGT-GCCGATGC
1 CATGTCCCAGACATGTCTTACACTGG--CT-ATCTCTGTAGCCGAT-A
* * *
77529944 CATGTCCCAGACATGGTCTTACACTGGCTATCAT-AGTATGGCTGATG
1 CATGTCCCAGACAT-GTCTTACACTGGCTATC-TCTGTA--GCCGATA
* * ** * *
77529991 CATGTCCCAGACATATCTTACACTAGCCCTCGTCTGGATA-CCTATGC
1 CATGTCCCAGACATGTCTTACACTGGCTATC-TCT-G-TAGCCGAT-A
* * * *
77530038 CATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGTCGA-A
1 CATGTCCCAGACAT-GTCTTACACTGGCTATC-T-CTGTAGCCGATA
77530084 GCATGTCCCAGACATGTCTTACACTGGC
1 -CATGTCCCAGACATGTCTTACACTGGC
77530112 GCACAAATCA
Statistics
Matches: 250, Mismatches: 32, Indels: 51
0.75 0.10 0.15
Matches are distributed among these distances:
43 5 0.02
44 26 0.10
45 5 0.02
46 40 0.16
47 91 0.36
48 50 0.20
49 21 0.08
50 9 0.04
51 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.28
Consensus pattern (44 bp):
CATGTCCCAGACATGTCTTACACTGGCTATCTCTGTAGCCGATA
Found at i:77530001 original size:94 final size:94
Alignment explanation
Indices: 77529748--77530108 Score: 391
Period size: 94 Copynumber: 3.9 Consensus size: 94
77529738 TGGGATATAT
* * *
77529748 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-TACGCGTGATGATGCATGTC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTA--TG-GCTGATGCATGTC
*
77529812 CCAGACATGTCTTACACTAGCA--CAACTCT-
63 CCAGACATGTCTTACACTAGCACTCATCTCTG
* * * * *
77529841 TAGCCGAT-TCATGTCCCAGACA-CGTCTTACACTGGCTATC-TCTGTCGA-GGCCGATACATGT
1 T-GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCAT-AGT--ATGGCTGATGCATGT
*
77529902 CCCAGACATGTCTTACACTGGCACTCATCTCTG
62 CCCAGACATGTCTTACACTAGCACTCATCTCTG
77529935 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGCTGATGCATGTCCCA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGCTGATGCATGTCCCA
* * * *
77530000 GACATATCTTACACTAGCCCTCGTCT-GG
66 GACATGTCTTACACTAGCACTCATCTCTG
* * * * * *
77530028 ATACCTATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGG-TCGAAGCATGTCC
1 -TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGCT-GATGCATGTCC
77530092 CAGACATGTCTTACACT
64 CAGACATGTCTTACACT
77530109 GGCGCACAAA
Statistics
Matches: 228, Mismatches: 26, Indels: 27
0.81 0.09 0.10
Matches are distributed among these distances:
91 32 0.14
92 17 0.07
93 30 0.13
94 128 0.56
95 20 0.09
96 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.28
Consensus pattern (94 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGCTGATGCATGTCCCA
GACATGTCTTACACTAGCACTCATCTCTG
Found at i:77530014 original size:141 final size:137
Alignment explanation
Indices: 77529750--77530111 Score: 372
Period size: 141 Copynumber: 2.6 Consensus size: 137
77529740 GGATATATTG
* * *
77529750 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATACGCGTGATGATGCATGTCCCA
1 CCGATGACATGTCCCAGACATGGTCTTACACTGGCTCTCAT-T-C-TGTGACGATGCATGTCCCA
* * * * * *
77529815 GACATGTCTTACACTAGCACAACTCTTAGCCGATTCATGTCCCAGACACGTCTTACACTGGCTAT
63 GACATGTCTTACACTGGCACAACTCATAGCCGATGCATGTCCCAGACACATCTTACACTAGCCAT
*
77529880 C-TCTGTCGAGG
128 CGTCTG--GAGA
* *
77529891 CCGAT-ACATGTCCCAGACAT-GTCTTACACTGGCACTCATCTCTGTGCCGATGCCATGTCCCAG
1 CCGATGACATGTCCCAGACATGGTCTTACACTGGCTCTCAT-TCTGTGACGATG-CATGTCCCAG
* * * *
77529954 ACATGGTCTTACACTGGCTATCATAGT-ATGGCTGATGCATGTCCCAGACATATCTTACACTAGC
64 ACAT-GTCTTACACTGGC-A-CA-ACTCATAGCCGATGCATGTCCCAGACACATCTTACACTAGC
* *
77530018 CCTCGTCTGGATA
125 CATCGTCTGGAGA
* * ** * *
77530031 CCTATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGTCGAAGCATGTCCCAGA
1 CCGATGACATGTCCCAGACATGGTCTTACACTGGCTCTCATTCTGT-GACGATGCATGTCCCAGA
77530096 CATGTCTTACACTGGC
65 CATGTCTTACACTGGC
77530112 GCACAAATCA
Statistics
Matches: 186, Mismatches: 26, Indels: 19
0.81 0.11 0.08
Matches are distributed among these distances:
137 7 0.04
138 15 0.08
139 31 0.17
140 34 0.18
141 70 0.38
142 29 0.16
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (137 bp):
CCGATGACATGTCCCAGACATGGTCTTACACTGGCTCTCATTCTGTGACGATGCATGTCCCAGAC
ATGTCTTACACTGGCACAACTCATAGCCGATGCATGTCCCAGACACATCTTACACTAGCCATCGT
CTGGAGA
Found at i:77540189 original size:23 final size:23
Alignment explanation
Indices: 77540141--77540216 Score: 75
Period size: 23 Copynumber: 3.3 Consensus size: 23
77540131 GCTCGTATGG
* * *
77540141 GCTTACTGATTCAACTTG-TAAAA
1 GCTTACTGATTCAGCTCGAT-AGA
*
77540164 GCTTACTGCTTCAGCTC-ATTAGA
1 GCTTACTGATTCAGCTCGA-TAGA
*
77540187 GCTTACCGATTCAGCTCGATAGA
1 GCTTACTGATTCAGCTCGATAGA
77540210 GCTTACT
1 GCTTACT
77540217 ATTTATTAGC
Statistics
Matches: 43, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
23 41 0.95
24 2 0.05
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.33
Consensus pattern (23 bp):
GCTTACTGATTCAGCTCGATAGA
Found at i:77540464 original size:20 final size:21
Alignment explanation
Indices: 77540439--77540533 Score: 101
Period size: 20 Copynumber: 4.7 Consensus size: 21
77540429 TTATTAATGG
77540439 ATGAATTACTATTGAAT-TGA
1 ATGAATTACTATTGAATATGA
* * *
77540459 ATGAATTATTGTTG-ATATGG
1 ATGAATTACTATTGAATATGA
*
77540479 GTGAATTACTATTGAA-ATGA
1 ATGAATTACTATTGAATATGA
77540499 ATGAATTACTATT-AATAT-A
1 ATGAATTACTATTGAATATGA
*
77540518 GATGAATTACTGTTGA
1 -ATGAATTACTATTGA
77540534 TACGGATAAA
Statistics
Matches: 61, Mismatches: 9, Indels: 9
0.77 0.11 0.11
Matches are distributed among these distances:
19 5 0.08
20 54 0.89
21 2 0.03
ACGTcount: A:0.38, C:0.04, G:0.18, T:0.40
Consensus pattern (21 bp):
ATGAATTACTATTGAATATGA
Found at i:77540500 original size:40 final size:40
Alignment explanation
Indices: 77540435--77540567 Score: 142
Period size: 40 Copynumber: 3.3 Consensus size: 40
77540425 TATTTTATTA
* *
77540435 ATGGATGAATTACTATTGAATTGAATGAATTATTGTTGAT
1 ATGGATGAATTACTATTGAAATGAATGAATTATTGTTAAT
* * *
77540475 ATGGGTGAATTACTATTGAAATGAATGAATTACTATTAAT
1 ATGGATGAATTACTATTGAAATGAATGAATTATTGTTAAT
* * * * * * *
77540515 ATAGATGAATTACTGTTGATACGGATAAATTATTGTTATT
1 ATGGATGAATTACTATTGAAATGAATGAATTATTGTTAAT
77540555 ACT-GATGAATTAC
1 A-TGGATGAATTAC
77540568 GGGTTATACG
Statistics
Matches: 77, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
40 76 0.99
41 1 0.01
ACGTcount: A:0.37, C:0.05, G:0.18, T:0.40
Consensus pattern (40 bp):
ATGGATGAATTACTATTGAAATGAATGAATTATTGTTAAT
Found at i:77540546 original size:60 final size:60
Alignment explanation
Indices: 77540434--77540546 Score: 149
Period size: 60 Copynumber: 1.9 Consensus size: 60
77540424 ATATTTTATT
* * * * *
77540434 AATGGATGAATTACTATTGAATTGAATGAATTATTGTTGATATGGGTGAATTACTATTGA
1 AATGAATGAATTACTATTGAATTGAATGAATTACTGTTGATACGGATAAATTACTATTGA
77540494 AATGAATGAATTACTATT-AATAT-AGATGAATTACTGTTGATACGGATAAATTA
1 AATGAATGAATTACTATTGAAT-TGA-ATGAATTACTGTTGATACGGATAAATTA
77540547 TTGTTATTAC
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
59 4 0.09
60 42 0.91
ACGTcount: A:0.39, C:0.04, G:0.19, T:0.38
Consensus pattern (60 bp):
AATGAATGAATTACTATTGAATTGAATGAATTACTGTTGATACGGATAAATTACTATTGA
Found at i:77540565 original size:20 final size:20
Alignment explanation
Indices: 77540437--77540588 Score: 85
Period size: 20 Copynumber: 7.6 Consensus size: 20
77540427 TTTTATTAAT
* *
77540437 GGATGAATTACTATTGA-ATT
1 GGATGAATTACTGTTGATA-C
* * *
77540457 GAATGAATTATTGTTGATAT
1 GGATGAATTACTGTTGATAC
* * * *
77540477 GGGTGAATTACTATTGAAAT
1 GGATGAATTACTGTTGATAC
* * * *
77540497 GAATGAATTACTATTAATAT
1 GGATGAATTACTGTTGATAC
*
77540517 AGATGAATTACTGTTGATAC
1 GGATGAATTACTGTTGATAC
* *
77540537 GGATAAATTATTGTT-ATTAC
1 GGATGAATTACTGTTGA-TAC
* *
77540557 TGATGAATTACGGGTT-ATAC
1 GGATGAATTAC-TGTTGATAC
*
77540577 GGATGAACTACT
1 GGATGAATTACT
77540589 ATTTACAATT
Statistics
Matches: 102, Mismatches: 27, Indels: 7
0.75 0.20 0.05
Matches are distributed among these distances:
19 1 0.01
20 96 0.94
21 5 0.05
ACGTcount: A:0.36, C:0.07, G:0.20, T:0.38
Consensus pattern (20 bp):
GGATGAATTACTGTTGATAC
Found at i:77546171 original size:46 final size:46
Alignment explanation
Indices: 77546121--77546246 Score: 198
Period size: 46 Copynumber: 2.7 Consensus size: 46
77546111 TGGTTGAGCA
* *
77546121 TCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
77546167 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * *
77546213 CCCGAGCTCATTGAGTTGAGTCTGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
77546247 GGGGCGGGTT
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
46 74 1.00
ACGTcount: A:0.21, C:0.21, G:0.27, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:77548764 original size:15 final size:15
Alignment explanation
Indices: 77548744--77548772 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
77548734 ATTTTGTGTG
77548744 ATGTTTTATTATAAA
1 ATGTTTTATTATAAA
77548759 ATGTTTTATTATAA
1 ATGTTTTATTATAA
77548773 GATGAATTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.55
Consensus pattern (15 bp):
ATGTTTTATTATAAA
Found at i:77552759 original size:21 final size:22
Alignment explanation
Indices: 77552733--77552779 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
77552723 TAGCACTGGT
* *
77552733 GTGT-CCTAGGGTCACACGGGC
1 GTGTCCCTAGGGCCACACAGGC
*
77552754 GTGTCCCTTGGGCCACACAGGC
1 GTGTCCCTAGGGCCACACAGGC
77552776 GTGT
1 GTGT
77552780 GTGCCCTGTA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 4 0.18
22 18 0.82
ACGTcount: A:0.13, C:0.30, G:0.36, T:0.21
Consensus pattern (22 bp):
GTGTCCCTAGGGCCACACAGGC
Found at i:77557952 original size:57 final size:56
Alignment explanation
Indices: 77557891--77558011 Score: 138
Period size: 57 Copynumber: 2.1 Consensus size: 56
77557881 AGTATGGATA
*
77557891 GGTAATCTAGATC-AAGCTCT-TTAGAGCATATGTCATAAAAAGGATTTACCCTGGACT
1 GGTAATCT-GA-CGAAGCTCTATT-GAGCATATATCATAAAAAGGATTTACCCTGGACT
* * * * *
77557948 GGTAATCCTGACGAAGCTCTATTGAGTATATATTATAGACAGGATTTAGCCTGGACT
1 GGTAAT-CTGACGAAGCTCTATTGAGCATATATCATAAAAAGGATTTACCCTGGACT
77558005 GGTAATC
1 GGTAATC
77558012 CTATTGTCTA
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
56 2 0.04
57 49 0.89
58 4 0.07
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (56 bp):
GGTAATCTGACGAAGCTCTATTGAGCATATATCATAAAAAGGATTTACCCTGGACT
Found at i:77562306 original size:14 final size:14
Alignment explanation
Indices: 77562287--77562316 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
77562277 TGATTGTTTT
77562287 TAATCTAATTTAAC
1 TAATCTAATTTAAC
77562301 TAATCTAATTTAAC
1 TAATCTAATTTAAC
77562315 TA
1 TA
77562317 CGAATGCAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.43, C:0.13, G:0.00, T:0.43
Consensus pattern (14 bp):
TAATCTAATTTAAC
Found at i:77564660 original size:16 final size:17
Alignment explanation
Indices: 77564629--77564661 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
77564619 TTCATAAGCA
*
77564629 TATATCACTCATTTCAT
1 TATATCAATCATTTCAT
77564646 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
77564662 GCTCCATCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.33, C:0.18, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:77565011 original size:46 final size:46
Alignment explanation
Indices: 77564941--77565122 Score: 283
Period size: 46 Copynumber: 4.0 Consensus size: 46
77564931 TTTGACATGA
* * * *** *
77564941 TGCCATAGTGTCTTTCAACTATGGTCTTGTTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
77564987 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
77565033 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* *
77565079 TGCCATGGTATCTTTCAACAATGGTCTTACATATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
77565123 AGAGCACACT
Statistics
Matches: 127, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 127 1.00
ACGTcount: A:0.24, C:0.23, G:0.15, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:77567154 original size:123 final size:123
Alignment explanation
Indices: 77566935--77567182 Score: 478
Period size: 123 Copynumber: 2.0 Consensus size: 123
77566925 TCAATAATAA
77566935 CAAACTTAAAAACATATTGAAATCTTGATATACTTACCTTGTTCTATTGATACTAATCTTTAACT
1 CAAACTTAAAAACATATTGAAATCTTGATATACTTACCTTGTTCTATTGATACTAATCTTTAACT
77567000 TGATTTTCTATCTCCTCCAGCTTCTATTTCTTGAATCCAACTTGATATTCTAACTCCC
66 TGATTTTCTATCTCCTCCAGCTTCTATTTCTTGAATCCAACTTGATATTCTAACTCCC
77567058 CAAACTTAAAAACATATTGAAATCTTGATATACTTACCTTGTTCTATTGATACTAATCTTTAACT
1 CAAACTTAAAAACATATTGAAATCTTGATATACTTACCTTGTTCTATTGATACTAATCTTTAACT
* *
77567123 TGATTTTGTCTCTCCTCCAGCTTCTATTTCTTGAATCCAACTTGATATTCTAACTCCC
66 TGATTTTCTATCTCCTCCAGCTTCTATTTCTTGAATCCAACTTGATATTCTAACTCCC
77567181 CA
1 CA
77567183 TGGTCTCCTT
Statistics
Matches: 123, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
123 123 1.00
ACGTcount: A:0.29, C:0.23, G:0.07, T:0.41
Consensus pattern (123 bp):
CAAACTTAAAAACATATTGAAATCTTGATATACTTACCTTGTTCTATTGATACTAATCTTTAACT
TGATTTTCTATCTCCTCCAGCTTCTATTTCTTGAATCCAACTTGATATTCTAACTCCC
Found at i:77567430 original size:20 final size:21
Alignment explanation
Indices: 77567387--77567446 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
77567377 TAATTAATAA
**
77567387 TAAAATAATAAAATATCTCCT
1 TAAAATAATAAAATATCTAAT
*
77567408 TAAAATAAT-ATATATCTAAT
1 TAAAATAATAAAATATCTAAT
*
77567428 TAAATAATCATAAAATATC
1 T-AA-AATAATAAAATATC
77567447 ATCAACATCA
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
20 9 0.29
21 11 0.35
22 5 0.16
23 6 0.19
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.35
Consensus pattern (21 bp):
TAAAATAATAAAATATCTAAT
Found at i:77573282 original size:184 final size:184
Alignment explanation
Indices: 77572973--77573341 Score: 614
Period size: 184 Copynumber: 2.0 Consensus size: 184
77572963 TAGATAACCA
* * *
77572973 TCAAGGAGGTTGTTAGCAATCTTTGTTAGCATGTTGGGTGGGCTGAAACCACACTCATTCAGTCA
1 TCAAGGAGGTTGTTAACAATCTTTGTCAGCATGTTGGGTAGGCTGAAACCACACTCATTCAGTCA
* * *
77573038 AGGCAAGTATCGATATATTTTAGAGATGGGTGCTTAAATGAGGATGTTAATCTTGTTGATTATAA
66 AGGCAAGTATCGATATAGTTTAGAGATAGATGCTTAAATGAGGATGTTAATCTTGTTGATTATAA
* * *
77573103 GACTAATCGAGGGTCTTGATTGGATATAGGTTGGTGGTCGTGGTTTTCGGCGCG
131 AACTAATCGAGGGTCTTGATTAGATATAGGTTGGTGGTCGTGGTTTTCAGCGCG
*
77573157 TCAAGGAGGTTGTTAACAATCTTTGTCAGCGTGTTGGGTAGGCTGAAACCACACTCATTCAGTCA
1 TCAAGGAGGTTGTTAACAATCTTTGTCAGCATGTTGGGTAGGCTGAAACCACACTCATTCAGTCA
*
77573222 AGGCAAGTATC-AGTATAGTTTAGAGATAGATGCTTAAATGAGGGTGTTAATCTTGTTGATTATA
66 AGGCAAGTATCGA-TATAGTTTAGAGATAGATGCTTAAATGAGGATGTTAATCTTGTTGATTATA
*
77573286 AAACTAATTGAGGGTCTTGATTAGATATAGGTTGGTGGTCGTGGTTTTCAGCGCG
130 AAACTAATCGAGGGTCTTGATTAGATATAGGTTGGTGGTCGTGGTTTTCAGCGCG
77573341 T
1 T
77573342 TCTCGTAAAT
Statistics
Matches: 172, Mismatches: 12, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
183 1 0.01
184 171 0.99
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.34
Consensus pattern (184 bp):
TCAAGGAGGTTGTTAACAATCTTTGTCAGCATGTTGGGTAGGCTGAAACCACACTCATTCAGTCA
AGGCAAGTATCGATATAGTTTAGAGATAGATGCTTAAATGAGGATGTTAATCTTGTTGATTATAA
AACTAATCGAGGGTCTTGATTAGATATAGGTTGGTGGTCGTGGTTTTCAGCGCG
Found at i:77584023 original size:50 final size:50
Alignment explanation
Indices: 77583948--77584044 Score: 167
Period size: 50 Copynumber: 1.9 Consensus size: 50
77583938 GGTAATTAGC
**
77583948 TTAATAGCAGTTTTTCCCAAAATTGCAATCCCTTGGGTATGATCCTCAGA
1 TTAATAGCAGTTTTTCAAAAAATTGCAATCCCTTGGGTATGATCCTCAGA
*
77583998 TTAATAGCAGTTTTTCAAAAAATTGCAATCTCTTGGGTATGATCCTC
1 TTAATAGCAGTTTTTCAAAAAATTGCAATCCCTTGGGTATGATCCTC
77584045 GGAATACTTA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
50 44 1.00
ACGTcount: A:0.29, C:0.20, G:0.15, T:0.36
Consensus pattern (50 bp):
TTAATAGCAGTTTTTCAAAAAATTGCAATCCCTTGGGTATGATCCTCAGA
Found at i:77586913 original size:29 final size:30
Alignment explanation
Indices: 77586802--77586921 Score: 86
Period size: 30 Copynumber: 4.1 Consensus size: 30
77586792 GTAATCTAAC
* *
77586802 ATGTAAGCCCTTGTGGTAGGAACTTGTTAT
1 ATGTAAGCCATTGTGGTAGGAACTAGTTAT
* * * * *
77586832 ATGTGAGACATTGTTGTGGGAACTAGTTAC
1 ATGTAAGCCATTGTGGTAGGAACTAGTTAT
* * * *
77586862 ATGTGAGCCGTTGTGGCA-AAATCTAG-TAT
1 ATGTAAGCCATTGTGGTAGGAA-CTAGTTAT
*
77586891 ATGTAAGCCTTTGTGGT-GGAATCTA-TTAT
1 ATGTAAGCCATTGTGGTAGGAA-CTAGTTAT
77586920 AT
1 AT
77586922 CTGGAAGCCT
Statistics
Matches: 69, Mismatches: 18, Indels: 7
0.73 0.19 0.07
Matches are distributed among these distances:
29 29 0.42
30 40 0.58
ACGTcount: A:0.26, C:0.12, G:0.27, T:0.36
Consensus pattern (30 bp):
ATGTAAGCCATTGTGGTAGGAACTAGTTAT
Found at i:77587572 original size:20 final size:20
Alignment explanation
Indices: 77587547--77587586 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
77587537 CGTGGGGGTA
77587547 GGCTTGGGACACGCCCGTTC
1 GGCTTGGGACACGCCCGTTC
77587567 GGCTTGGGACACGCCCGTTC
1 GGCTTGGGACACGCCCGTTC
77587587 TTCAGCCCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.10, C:0.35, G:0.35, T:0.20
Consensus pattern (20 bp):
GGCTTGGGACACGCCCGTTC
Found at i:77588976 original size:84 final size:84
Alignment explanation
Indices: 77588831--77588985 Score: 220
Period size: 84 Copynumber: 1.8 Consensus size: 84
77588821 TAAGATGCCA
* * * *
77588831 ATGCCATGTCCCAGACATGGTCTTACATCAGATCTCGCATCGATGTCATATCCCAAATATGGTCT
1 ATGCCATGTCCCAAACATGGTCTTACATCAGATCTCACATCAATGCCATATCCCAAATATGGTCT
77588896 TATACGAATTCTTATTTCG
66 TATACGAATTCTTATTTCG
* * * ** *
77588915 ATGCCATGTCCCAAATATGGTCTTACATGAGATCTCATATCAATGCCATATCCCAGTTATGGTTT
1 ATGCCATGTCCCAAACATGGTCTTACATCAGATCTCACATCAATGCCATATCCCAAATATGGTCT
77588980 TATACG
66 TATACG
77588986 GGATCTCATC
Statistics
Matches: 61, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
84 61 1.00
ACGTcount: A:0.27, C:0.24, G:0.15, T:0.34
Consensus pattern (84 bp):
ATGCCATGTCCCAAACATGGTCTTACATCAGATCTCACATCAATGCCATATCCCAAATATGGTCT
TATACGAATTCTTATTTCG
Found at i:77588977 original size:42 final size:42
Alignment explanation
Indices: 77588829--77588969 Score: 140
Period size: 42 Copynumber: 3.4 Consensus size: 42
77588819 AATAAGATGC
* * * * **
77588829 CAATGCCATGTCCCAGACATGGTCTTACATCAGATCTCGCAT
1 CAATGCCATATCCCAAATATGGTCTTACATGAGATCTCATAT
* * * * * *
77588871 CGATGTCATATCCCAAATATGGTCTTATACGA-ATTCTTATTT
1 CAATGCCATATCCCAAATATGGTCTTACATGAGA-TCTCATAT
* *
77588913 CGATGCCATGTCCCAAATATGGTCTTACATGAGATCTCATAT
1 CAATGCCATATCCCAAATATGGTCTTACATGAGATCTCATAT
77588955 CAATGCCATATCCCA
1 CAATGCCATATCCCA
77588970 GTTATGGTTT
Statistics
Matches: 77, Mismatches: 20, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
41 1 0.01
42 75 0.97
43 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.31
Consensus pattern (42 bp):
CAATGCCATATCCCAAATATGGTCTTACATGAGATCTCATAT
Found at i:77591243 original size:40 final size:39
Alignment explanation
Indices: 77591152--77591302 Score: 128
Period size: 40 Copynumber: 3.8 Consensus size: 39
77591142 ATAACCATGT
* *
77591152 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
*
77591192 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTA-GCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATG--ACTA
* * ** *
77591232 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
* *
77591272 GCATAATTGTCTTCGGGAT-TTAGCCCGGATA
1 GCACAA-TGCCTTCGGG-TCTTAGCCCGGATA
77591303 TCATTCAATT
Statistics
Matches: 92, Mismatches: 13, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
38 1 0.01
39 4 0.04
40 85 0.92
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
Found at i:77591286 original size:80 final size:80
Alignment explanation
Indices: 77591152--77591301 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
77591142 ATAACCATGT
*
77591152 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
77591216 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
77591232 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
77591295 CCCGGAT
64 CCCGGAT
77591302 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:77594559 original size:6 final size:6
Alignment explanation
Indices: 77594548--77594987 Score: 360
Period size: 6 Copynumber: 72.5 Consensus size: 6
77594538 AACCAAAATG
*
77594548 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* *
77594596 AGTAA-C AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* *
77594645 AGAATC AGTAA-C AGAATC AGAATC AGAATC AGTATT AGTAA-C AGAATC
1 AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC AG-AATC AGAATC
* *
77594693 AGAATC AGAATC AGAA-C TAG-GTGAC AGAATC AGAATC AGAATC AGTGA-C
1 AGAATC AGAATC AGAATC -AGAAT--C AGAATC AGAATC AGAATC AG-AATC
* *
77594742 AGAATC AGAATC AGAATC AGTATT AGTAA-C AGAATC AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC
* *
77594790 AGAA-C TAG-GTGAC AGAATC AGAATC AGAATC GGTAA-C AGAATC AGAATC
1 AGAATC -AGAAT--C AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC
* * * *
77594839 AGAATC AGTATT AGTAA-C AGAATC AGAATC AGAATC AGAATT AG-GTGAC
1 AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C
* *
77594888 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATGTT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* *
77594936 AGTAA-C AGAATC AGAATC AGAATC AGAATT ACGTGA-C AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC
77594985 AGA
1 AGA
77594988 TGTGAATGCA
Statistics
Matches: 353, Mismatches: 38, Indels: 86
0.74 0.08 0.18
Matches are distributed among these distances:
5 26 0.07
6 295 0.84
7 23 0.07
8 9 0.03
ACGTcount: A:0.47, C:0.15, G:0.19, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:77594563 original size:30 final size:30
Alignment explanation
Indices: 77594548--77594987 Score: 527
Period size: 30 Copynumber: 15.3 Consensus size: 30
77594538 AACCAAAATG
*
77594548 AGAATCAGAATCAGAATCAGTAACAGAATC
1 AGAATCAGAATCAGAATTAGTAACAGAATC
77594578 AGAATCAGAATCA-ATATTAGTAACAGAATC
1 AGAATCAGAATCAGA-ATTAGTAACAGAATC
77594608 AGAATCAGAATCAGAATTAGGT----G-A-C
1 AGAATCAGAATCAGAATTA-GTAACAGAATC
*
77594633 AGAATCAGAATCAGAATCAGTAACAGAATC
1 AGAATCAGAATCAGAATTAGTAACAGAATC
*
77594663 AGAATCAGAATCAGTATTAGTAACAGAATC
1 AGAATCAGAATCAGAATTAGTAACAGAATC
* *
77594693 AGAATCAGAATCAGAACTAGGTGACAGAATC
1 AGAATCAGAATCAGAATTA-GTAACAGAATC
77594724 AGAATCAGAATCAG---T-G--ACAGAATC
1 AGAATCAGAATCAGAATTAGTAACAGAATC
*
77594748 AGAATCAGAATCAGTATTAGTAACAGAATC
1 AGAATCAGAATCAGAATTAGTAACAGAATC
* *
77594778 AGAATCAGAATCAGAACTAGGTGACAGAATC
1 AGAATCAGAATCAGAATTA-GTAACAGAATC
77594809 AGAATCAGAATC-G-----GTAACAGAATC
1 AGAATCAGAATCAGAATTAGTAACAGAATC
*
77594833 AGAATCAGAATCAGTATTAGTAACAGAATC
1 AGAATCAGAATCAGAATTAGTAACAGAATC
77594863 AGAATCAGAATCAGAATTAGGT----G-A-C
1 AGAATCAGAATCAGAATTA-GTAACAGAATC
*
77594888 AGAATCAGAATCAGAATCAGTAACAGAATC
1 AGAATCAGAATCAGAATTAGTAACAGAATC
*
77594918 AGAATCAGAATCA-ATGTTAGTAACAGAATC
1 AGAATCAGAATCAGA-ATTAGTAACAGAATC
*
77594948 AGAATCAGAATCAGAATTACGTGACAGAATC
1 AGAATCAGAATCAGAATTA-GTAACAGAATC
77594979 AGAATCAGA
1 AGAATCAGA
77594988 TGTGAATGCA
Statistics
Matches: 360, Mismatches: 17, Indels: 65
0.81 0.04 0.15
Matches are distributed among these distances:
24 48 0.13
25 39 0.11
26 3 0.01
27 3 0.01
28 4 0.01
29 4 0.01
30 188 0.52
31 71 0.20
ACGTcount: A:0.47, C:0.15, G:0.19, T:0.19
Consensus pattern (30 bp):
AGAATCAGAATCAGAATTAGTAACAGAATC
Found at i:77594648 original size:85 final size:85
Alignment explanation
Indices: 77594548--77594987 Score: 808
Period size: 85 Copynumber: 5.2 Consensus size: 85
77594538 AACCAAAATG
*
77594548 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAAT
77594613 CAGAATCAGAATTAGGTGAC
66 CAGAATCAGAATTAGGTGAC
77594633 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAAT
*
77594698 CAGAATCAGAACTAGGTGAC
66 CAGAATCAGAATTAGGTGAC
*
77594718 AGAATCAGAATCAGAATCAGTGACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAAT
*
77594783 CAGAATCAGAACTAGGTGAC
66 CAGAATCAGAATTAGGTGAC
*
77594803 AGAATCAGAATCAGAATCGGTAACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAAT
77594868 CAGAATCAGAATTAGGTGAC
66 CAGAATCAGAATTAGGTGAC
* *
77594888 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATGTTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAAT
*
77594953 CAGAATCAGAATTACGTGAC
66 CAGAATCAGAATTAGGTGAC
77594973 AGAATCAGAATCAGA
1 AGAATCAGAATCAGA
77594988 TGTGAATGCA
Statistics
Matches: 345, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
85 345 1.00
ACGTcount: A:0.47, C:0.15, G:0.19, T:0.19
Consensus pattern (85 bp):
AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAAT
CAGAATCAGAATTAGGTGAC
Found at i:77595143 original size:27 final size:26
Alignment explanation
Indices: 77595106--77595171 Score: 87
Period size: 27 Copynumber: 2.5 Consensus size: 26
77595096 AGCATGGCTG
*
77595106 CCAGAACAGATATCGTGACAGAGTCA
1 CCAGAACAGATATCGTGACAGAGCCA
* *
77595132 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATCGTGACAGAGCCA
77595159 CCAGAATCAGATA
1 CCAGAA-CAGATA
77595172 ATGTGGCAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
26 6 0.17
27 29 0.83
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATCGTGACAGAGCCA
Found at i:77595176 original size:27 final size:27
Alignment explanation
Indices: 77595106--77595179 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 27
77595096 AGCATGGCTG
* *
77595106 CCAGAA-CAGAT-ATCGTGACAGAGTCA
1 CCAGAATCAGATAAT-GTGGCAGAGCCA
*
77595132 CCAG-ATACAGATATTGTGGCAGAGCCA
1 CCAGAAT-CAGATAATGTGGCAGAGCCA
77595159 CCAGAATCAGATAATGTGGCA
1 CCAGAATCAGATAATGTGGCA
77595180 AACCCACCTA
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
25 1 0.03
26 4 0.10
27 32 0.80
28 3 0.08
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (27 bp):
CCAGAATCAGATAATGTGGCAGAGCCA
Found at i:77595186 original size:27 final size:27
Alignment explanation
Indices: 77595130--77595187 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
77595120 GTGACAGAGT
* * *
77595130 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATAATGTGGCAAACC
77595157 CACCAGA-ATCAGATAATGTGGCAAACC
1 CACCAGATA-CAGATAATGTGGCAAACC
77595184 CACC
1 CACC
77595188 TAACAGAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 1 0.04
27 26 0.96
ACGTcount: A:0.36, C:0.28, G:0.21, T:0.16
Consensus pattern (27 bp):
CACCAGATACAGATAATGTGGCAAACC
Found at i:77595392 original size:22 final size:22
Alignment explanation
Indices: 77595344--77595402 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
77595334 GTAAATACGT
*
77595344 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
77595366 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
77595388 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
77595403 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:77595569 original size:27 final size:26
Alignment explanation
Indices: 77595490--77595572 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
77595480 TCGATCGGTC
* * *
77595490 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
77595516 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
77595543 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
77595570 AAC
1 AAC
77595573 GCTTCCTCCG
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 8 0.16
27 43 0.84
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:77595829 original size:27 final size:27
Alignment explanation
Indices: 77595771--77595911 Score: 158
Period size: 27 Copynumber: 5.3 Consensus size: 27
77595761 GGGGCAAAAT
* * *
77595771 GGTAATTTTACCC-ACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
77595797 GATAATTCTACGCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
77595824 GGTAATTCTATCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
77595851 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
77595878 GGAAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
77595905 AGTAATT
1 GGTAATT
77595912 TCACAATCAA
Statistics
Matches: 94, Mismatches: 20, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
26 10 0.11
27 84 0.89
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:77595946 original size:27 final size:27
Alignment explanation
Indices: 77595916--77596298 Score: 441
Period size: 27 Copynumber: 14.2 Consensus size: 27
77595906 GTAATTTCAC
*
77595916 AATCAAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
77595943 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
77595970 AA-CTGAGGGTAAACCAGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * **
77595997 AATCAAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
77596024 AATCGAGGGTAAAACGATAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * * *
77596051 AATCTAAGGTAAAACAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
77596078 AA-CTGAGGGTAAAACAGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
** *
77596105 AATCGAGGGTAAAATAGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
** *
77596132 AATTAAGGGTAAAAAGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* **
77596159 AATCGAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
77596186 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
**
77596213 AA-CTGAGGGTAAAATAGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
*
77596240 AA-CTGAGAGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
*
77596267 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
77596294 AATCG
1 AATCG
77596299 GGAGTACTTT
Statistics
Matches: 301, Mismatches: 49, Indels: 12
0.83 0.14 0.03
Matches are distributed among these distances:
26 3 0.01
27 295 0.98
28 3 0.01
ACGTcount: A:0.42, C:0.10, G:0.21, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:77610838 original size:40 final size:40
Alignment explanation
Indices: 77610759--77610962 Score: 194
Period size: 40 Copynumber: 5.1 Consensus size: 40
77610749 ATTTAACCGA
* * * * * **
77610759 ATATAATGACTCGCTCAAATGCCTTCAGGACGAAGCCCGG
1 ATATAATAACTCGCACAATTGCCTTCGGGTCTTAGCCCGG
* * * *
77610799 TTATAGTGACTCGCACAATTGCCTTCGGGTCTTAACCCGG
1 ATATAATAACTCGCACAATTGCCTTCGGGTCTTAGCCCGG
* ** * * *
77610839 ATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGCCTGG
1 ATATAATAACTCGCACAATTGCCTTCGGGTCTTAGCCCGG
* *
77610879 ATATAACAACTCGCACGAA-TGCCTTCGAGTCTTAGCCCGG
1 ATATAATAACTCGCAC-AATTGCCTTCGGGTCTTAGCCCGG
* * *
77610919 ATATAATTACTAGCACAATTGCCTTCGGGACTTAGCCCGG
1 ATATAATAACTCGCACAATTGCCTTCGGGTCTTAGCCCGG
77610959 ATAT
1 ATAT
77610963 CATTCCAATG
Statistics
Matches: 133, Mismatches: 29, Indels: 4
0.80 0.17 0.02
Matches are distributed among these distances:
39 2 0.02
40 129 0.97
41 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (40 bp):
ATATAATAACTCGCACAATTGCCTTCGGGTCTTAGCCCGG
Found at i:77612651 original size:47 final size:47
Alignment explanation
Indices: 77612582--77612956 Score: 528
Period size: 47 Copynumber: 8.0 Consensus size: 47
77612572 GGCTGTCACA
* *
77612582 TGATGAATGTG-A-ATGTCTATATATGAGATAAGGCTGAATGGCCAATG
1 TGATGAATGTGAACATG-C-ATATATGTGATAAGGCCGAATGGCCAATG
*
77612629 TGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCAAATG
1 TGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATG
* * *
77612676 TGATGAATGTTAACATGCATATATGAGATAAGGCTGAATGGCCAATG
1 TGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATG
*
77612723 TGATGAATGTGGAA-ATGCATATATGTGATAAGGCCGAATGGCAAATG
1 TGATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCCAATG
*
77612770 TGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATG
1 TGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATG
*
77612817 TGATGAATGTG-ACATGCATATGTGTGATAAGGCCGAATGGCCAATG
1 TGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATG
*
77612863 TGATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCAATG
1 TGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATG
* * * * *
77612910 TGATGAACATG-GAA-GTGTATATATGTGGTAAAGCCGAATGGCTAATG
1 TGATG-A-ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATG
77612957 CGAAATGTGT
Statistics
Matches: 298, Mismatches: 23, Indels: 14
0.89 0.07 0.04
Matches are distributed among these distances:
46 47 0.16
47 237 0.80
48 8 0.03
49 6 0.02
ACGTcount: A:0.35, C:0.10, G:0.28, T:0.26
Consensus pattern (47 bp):
TGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATG
Found at i:77612863 original size:24 final size:24
Alignment explanation
Indices: 77612796--77612864 Score: 58
Period size: 24 Copynumber: 3.0 Consensus size: 24
77612786 GCATATATGA
77612796 GATAAGGCCGAATGGCCAA--TGT
1 GATAAGGCCGAATGGCCAATGTGT
* *
77612818 GATGAATG-TGACAT-G-CATATGTGT
1 GAT-AAGGCCGA-ATGGCCA-ATGTGT
77612842 GATAAGGCCGAATGGCCAATGTG
1 GATAAGGCCGAATGGCCAATGTG
77612865 ATGAATGTGA
Statistics
Matches: 35, Mismatches: 4, Indels: 14
0.66 0.08 0.26
Matches are distributed among these distances:
21 2 0.06
22 7 0.20
23 10 0.29
24 14 0.40
25 2 0.06
ACGTcount: A:0.30, C:0.14, G:0.32, T:0.23
Consensus pattern (24 bp):
GATAAGGCCGAATGGCCAATGTGT
Found at i:77612904 original size:187 final size:188
Alignment explanation
Indices: 77612582--77612956 Score: 594
Period size: 187 Copynumber: 2.0 Consensus size: 188
77612572 GGCTGTCACA
*
77612582 TGATGAATGTGAATGTCTATATATGAGATAAGGCTGAATGGCCAATGTGATGAATGTGAACATGC
1 TGATGAATGTGAATGTCTATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
* *
77612647 ATATATGTGATAAGGCCGAATGGCAAATGTGATGAATGTTAACATGCATATATGAGATAAGGCTG
66 ATATATGTGATAAGGCCGAATGGCAAATGTGATGAATGTGAACATGCATATATGAGATAAGGCAG
** *
77612712 AATGGCCAATGTGATGAATGTGGAAATGCATATATGTGATAAGGCCGAATGGCAAATG
131 AATGGCCAATGTGATGAACATGGAAATGCATATATGTGATAAAGCCGAATGGCAAATG
77612770 TGATGAATGTGAACATG-C-ATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTG-ACAT
1 TGATGAATGTG-A-ATGTCTATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACAT
* * *
77612832 GCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGC
64 GCATATATGTGATAAGGCCGAATGGCAAATGTGATGAATGTGAACATGCATATATGAGATAAGGC
* * * *
77612897 AGAATGGCCAATGTGATGAACATGGAAGTGTATATATGTGGTAAAGCCGAATGGCTAATG
129 AGAATGGCCAATGTGATGAACATGGAAATGCATATATGTGATAAAGCCGAATGGCAAATG
77612957 CGAAATGTGT
Statistics
Matches: 172, Mismatches: 13, Indels: 5
0.91 0.07 0.03
Matches are distributed among these distances:
187 117 0.68
188 50 0.29
189 2 0.01
190 3 0.02
ACGTcount: A:0.35, C:0.10, G:0.28, T:0.26
Consensus pattern (188 bp):
TGATGAATGTGAATGTCTATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
ATATATGTGATAAGGCCGAATGGCAAATGTGATGAATGTGAACATGCATATATGAGATAAGGCAG
AATGGCCAATGTGATGAACATGGAAATGCATATATGTGATAAAGCCGAATGGCAAATG
Found at i:77612992 original size:140 final size:138
Alignment explanation
Indices: 77612582--77613005 Score: 479
Period size: 140 Copynumber: 3.0 Consensus size: 138
77612572 GGCTGTCACA
* *
77612582 TGATGAATGTG-AATGTCTATATATGAGATAAGGCTGAATGGCCAATGTGATGAATGTGAACATG
1 TGATGAATGTGAAATG-C-ATATATGTGATAAGGCAGAATGGCCAATGTGATGAATGTGAACATG
*
77612646 CATATATGTGATAAGGCCGAATGGCAAATGTGATGAATGT-TAACATGCAT-ATATGAGATAAGG
64 CATATATGTGATAAGGCCGAATGGCAAATGTGA-GAATGTGTAA-A-G-ATGATATGAGGTAAGG
*
77612709 CTGAATGGCCAATG
125 CCGAATGGCCAATG
* *
77612723 TGATGAATGTGGAAATGCATATATGTGATAAGGCCGAATGGCAAATGTGATGAATGTGAACATGC
1 TGATGAATGT-GAAATGCATATATGTGATAAGGCAGAATGGCCAATGTGATGAATGTGAACATGC
* * * *
77612788 ATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTG---ACATGCATATGTGTGATAAGGC
65 ATATATGTGATAAGGCCGAATGGCAAATGTGA-GAATGTGTAAAGATG-ATATGAG-G-TAAGGC
77612850 CGAATGGCCAATG
126 CGAATGGCCAATG
*
77612863 TGATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCAATGTGATGAACATG-GAA-GT
1 TGATGAATGTGAA-ATGCATATATGTGATAAGGCAGAATGGCCAATGTGATG-A-ATGTGAACAT
* * * * * *
77612926 GTATATATGTGGTAAAGCCGAATGGCTAATGCGA-AATGTGTATAAGATGGATATGAGGTAAAGC
63 GCATATATGTGATAAGGCCGAATGGCAAATGTGAGAATGTGTA-AAGAT-GATATGAGGTAAGGC
*
77612990 CGAATGGCTAATG
126 CGAATGGCCAATG
77613003 TGA
1 TGA
77613006 AACGTGTATG
Statistics
Matches: 246, Mismatches: 22, Indels: 31
0.82 0.07 0.10
Matches are distributed among these distances:
136 2 0.01
138 13 0.05
139 3 0.01
140 113 0.46
141 96 0.39
142 14 0.06
143 5 0.02
ACGTcount: A:0.35, C:0.10, G:0.29, T:0.26
Consensus pattern (138 bp):
TGATGAATGTGAAATGCATATATGTGATAAGGCAGAATGGCCAATGTGATGAATGTGAACATGCA
TATATGTGATAAGGCCGAATGGCAAATGTGAGAATGTGTAAAGATGATATGAGGTAAGGCCGAAT
GGCCAATG
Found at i:77613060 original size:46 final size:46
Alignment explanation
Indices: 77612930--77613066 Score: 202
Period size: 46 Copynumber: 3.0 Consensus size: 46
77612920 GGAAGTGTAT
* *
77612930 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATAAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATGTGTATGAGATGG
* *
77612976 ATATGAGGTAAAGCCGAATGGCTAATGTGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATGTGTATGAGATGG
* * * *
77613022 ATATGTGGTAAAGCCAAATGGCTAATATGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATGTGTATGAGATG
77613067 TGTATATATA
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 81 1.00
ACGTcount: A:0.36, C:0.08, G:0.30, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATGTGTATGAGATGG
Found at i:77616136 original size:64 final size:64
Alignment explanation
Indices: 77616031--77616238 Score: 206
Period size: 67 Copynumber: 3.2 Consensus size: 64
77616021 CGTCATGTGT
*
77616031 ACAAGAGAGCTACAAGACATTATAATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATG
1 ACAAGAGAGCTAC--GAGA-TA-AATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATG
77616096 TAG
62 TAG
* * * * * * * *
77616099 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGCTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGAGATAAATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGT
77616164 AG
63 AG
* * *
77616166 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCGCATGGGTGGTACTGA-GTGTTCACCATGT-G
1 ACAAGAGAGCTACGAGATAAATGTAGCTAGGTCGCATGGGTGATACT-ATGTGTACACCATGTAG
77616228 TACAAGAGAGC
1 -ACAAGAGAGC
77616239 CGAACTCTAT
Statistics
Matches: 116, Mismatches: 19, Indels: 15
0.77 0.13 0.10
Matches are distributed among these distances:
62 1 0.01
63 19 0.16
64 21 0.18
65 9 0.08
66 21 0.18
67 32 0.28
68 13 0.11
ACGTcount: A:0.31, C:0.17, G:0.29, T:0.22
Consensus pattern (64 bp):
ACAAGAGAGCTACGAGATAAATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG
Found at i:77621012 original size:24 final size:24
Alignment explanation
Indices: 77620980--77621026 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
77620970 TGCCTCAGAC
*
77620980 TTGGTCTTACATGATGTAGTCTTA
1 TTGGTCTTACATGATATAGTCTTA
77621004 TTGGTCTTACATGATATAGTCTT
1 TTGGTCTTACATGATATAGTCTT
77621027 CATTTTCCAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.21, C:0.13, G:0.19, T:0.47
Consensus pattern (24 bp):
TTGGTCTTACATGATATAGTCTTA
Found at i:77622952 original size:27 final size:27
Alignment explanation
Indices: 77622922--77623019 Score: 99
Period size: 27 Copynumber: 3.6 Consensus size: 27
77622912 GTAAATCTAC
*
77622922 AAACCAAGGGTATTTCAATAATTTTGT
1 AAACCAAGGGTATTTCTATAATTTTGT
*
77622949 AAACCAATGGTATTTCTATAATTTT-T
1 AAACCAAGGGTATTTCTATAATTTTGT
* * *
77622975 AGAAAGTCAAGGGTATTTTTGTAATTTTGT
1 --AAA-CCAAGGGTATTTCTATAATTTTGT
* *
77623005 AAATCAGGGGTATTT
1 AAACCAAGGGTATTT
77623020 TGGTAATTTT
Statistics
Matches: 60, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
26 1 0.02
27 34 0.57
28 6 0.10
29 18 0.30
30 1 0.02
ACGTcount: A:0.34, C:0.08, G:0.17, T:0.41
Consensus pattern (27 bp):
AAACCAAGGGTATTTCTATAATTTTGT
Found at i:77623025 original size:27 final size:27
Alignment explanation
Indices: 77622971--77623108 Score: 127
Period size: 27 Copynumber: 5.1 Consensus size: 27
77622961 TTTCTATAAT
* * *
77622971 TTTTAGAAAGTCAAGGGTATTTTTGTAA
1 TTTTACAAA-TCAGGGGTATTTTGGTAA
**
77622999 TTTTGTAAATCAGGGGTATTTTGGTAA
1 TTTTACAAATCAGGGGTATTTTGGTAA
* * *
77623026 TTTTACAAAT-TGAGGGTATTTCGATAA
1 TTTTACAAATCAG-GGGTATTTTGGTAA
* * * *
77623053 TTTCACAAACCAGTGGTATTTCGGTAA
1 TTTTACAAATCAGGGGTATTTTGGTAA
77623080 TTTTACAAA-CTAGGGGTATTTTGGTAA
1 TTTTACAAATC-AGGGGTATTTTGGTAA
77623107 TT
1 TT
77623109 CTATCCTATA
Statistics
Matches: 90, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
26 2 0.02
27 80 0.89
28 8 0.09
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.41
Consensus pattern (27 bp):
TTTTACAAATCAGGGGTATTTTGGTAA
Found at i:77623070 original size:110 final size:108
Alignment explanation
Indices: 77622902--77623108 Score: 252
Period size: 110 Copynumber: 1.9 Consensus size: 108
77622892 CATCCTACAA
*** *
77622902 GGGTATTTTGGTAAATCTACAAACCAAGGGTATTTCAATAATTTTGTAAACCAATGGTATTTCTA
1 GGGTATTTTGGTAAATCTACAAACCAAGGGTATTTCAATAATTTCACAAACCAATGGTATTTCGA
* * *
77622967 TAATTTTTAGAAAGTCAAGGGTATTTTTGTAATTTTGTAAATCAG
66 TAA-TTTTACAAACT-AAGGGTATTTTGGTAATTTTGTAAATCAG
* * *** * * *
77623012 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGATAATTTCACAAACCAGTGGTATTTCGG
1 GGGTATTTTGGTAAATCTACAAACCAAGGGTATTTCAATAATTTCACAAACCAATGGTATTTCGA
*
77623077 TAATTTTACAAACTAGGGGTATTTTGGTAATT
66 TAATTTTACAAACTAAGGGTATTTTGGTAATT
77623109 CTATCCTATA
Statistics
Matches: 81, Mismatches: 16, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
108 16 0.20
109 9 0.11
110 56 0.69
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.40
Consensus pattern (108 bp):
GGGTATTTTGGTAAATCTACAAACCAAGGGTATTTCAATAATTTCACAAACCAATGGTATTTCGA
TAATTTTACAAACTAAGGGTATTTTGGTAATTTTGTAAATCAG
Found at i:77623108 original size:54 final size:53
Alignment explanation
Indices: 77622949--77623108 Score: 140
Period size: 54 Copynumber: 2.9 Consensus size: 53
77622939 ATAATTTTGT
* ** * * * ***
77622949 AAACCAATGGTATTTCTATAATTTTTAGAAAGTCAAGGGTATTTTTGTAATTTTGT
1 AAACCAGTGGTATTTCGGTAA-TTTTACAAA-T-AGGGGTATTTTGGTAATTTCAC
* * * * * *
77623005 AAATCAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGATAATTTCAC
1 AAACCAGTGGTATTTCGGTAATTTTACAAATAG-GGGTATTTTGGTAATTTCAC
77623059 AAACCAGTGGTATTTCGGTAATTTTACAAACTAGGGGTATTTTGGTAATT
1 AAACCAGTGGTATTTCGGTAATTTTACAAA-TAGGGGTATTTTGGTAATT
77623109 CTATCCTATA
Statistics
Matches: 81, Mismatches: 21, Indels: 6
0.75 0.19 0.06
Matches are distributed among these distances:
54 56 0.69
55 10 0.12
56 15 0.19
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (53 bp):
AAACCAGTGGTATTTCGGTAATTTTACAAATAGGGGTATTTTGGTAATTTCAC
Found at i:77623175 original size:27 final size:27
Alignment explanation
Indices: 77623143--77623281 Score: 190
Period size: 27 Copynumber: 5.1 Consensus size: 27
77623133 TTTCACAATT
*
77623143 GAGGGTAAAATGGTAATTTTGTAAA-C
1 GAGGGTAAAATGGTAATTCTGTAAATC
77623169 TGAGGGTAAAATGGTAATTCTGTAAATC
1 -GAGGGTAAAATGGTAATTCTGTAAATC
* *
77623197 GAGGGTAAAACGGTAATTTTGTAAATC
1 GAGGGTAAAATGGTAATTCTGTAAATC
* * *
77623224 GAGGGTGAAACGGTAATTCTATAAATC
1 GAGGGTAAAATGGTAATTCTGTAAATC
**
77623251 GAGGGTAAAATGGTAATTCTACAAATC
1 GAGGGTAAAATGGTAATTCTGTAAATC
77623278 GAGG
1 GAGG
77623282 ACATTTTAGT
Statistics
Matches: 102, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
27 101 0.99
28 1 0.01
ACGTcount: A:0.37, C:0.08, G:0.27, T:0.28
Consensus pattern (27 bp):
GAGGGTAAAATGGTAATTCTGTAAATC
Found at i:77625623 original size:31 final size:30
Alignment explanation
Indices: 77625580--77625661 Score: 148
Period size: 31 Copynumber: 2.7 Consensus size: 30
77625570 TCAGTCTCAA
77625580 CATAT-ACTGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGCCGAAGCCTTTTCATAAAT
77625609 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACT-GGCCGAAGCCTTTTCATAAAT
77625640 CATATCACTGGCCGAAGCCTTT
1 CATATCACTGGCCGAAGCCTTT
77625662 ACTGTAAGCG
Statistics
Matches: 51, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
29 5 0.10
30 16 0.31
31 30 0.59
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.29
Consensus pattern (30 bp):
CATATCACTGGCCGAAGCCTTTTCATAAAT
Found at i:77625906 original size:25 final size:25
Alignment explanation
Indices: 77625878--77625947 Score: 106
Period size: 25 Copynumber: 2.8 Consensus size: 25
77625868 CTCTTTTAAT
77625878 AACTGGGGCAAAGCCC-TTTCTGATA
1 AACTGGGGCAAAGCCCTTTTC-GATA
*
77625903 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
77625928 AACTGGGGCAGAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
77625948 AGCACTTCCT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
25 38 0.90
26 4 0.10
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.24
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:77626769 original size:27 final size:26
Alignment explanation
Indices: 77626739--77626814 Score: 75
Period size: 26 Copynumber: 2.9 Consensus size: 26
77626729 GGGCATATTC
77626739 GTCATTTTACCATATAAGGGTATTACG
1 GTCATTTTACC-TATAAGGGTATTACG
* *
77626766 GTCACTTTACCCTA-CAGGGCT-TTACG
1 GTCATTTTA-CCTATAAGGG-TATTACG
* *
77626792 GTCTTTTTACCTATTAGGGTATT
1 GTCATTTTACCTATAAGGGTATT
77626815 TTAGTCATTT
Statistics
Matches: 40, Mismatches: 5, Indels: 9
0.74 0.09 0.17
Matches are distributed among these distances:
25 5 0.12
26 22 0.55
27 11 0.28
28 2 0.05
ACGTcount: A:0.22, C:0.20, G:0.18, T:0.39
Consensus pattern (26 bp):
GTCATTTTACCTATAAGGGTATTACG
Found at i:77626892 original size:26 final size:26
Alignment explanation
Indices: 77626855--77626949 Score: 88
Period size: 26 Copynumber: 3.6 Consensus size: 26
77626845 GTAAATCTAC
77626855 AAACCAAGGGTATTTC-AGTAATTTTG
1 AAACCAAGGGTATTTCTA-TAATTTTG
*
77626881 AAACCAATGGTATTTCTATAATTTTTAG
1 AAACCAAGGGTATTTCTATAA-TTTT-G
* *
77626909 AAAGTCAAGGGTATTT-TGTAATTTTG
1 AAA-CCAAGGGTATTTCTATAATTTTG
*
77626935 TAAATC-AGGGTATTT
1 -AAACCAAGGGTATTT
77626950 TGGTAATTTT
Statistics
Matches: 60, Mismatches: 4, Indels: 11
0.80 0.05 0.15
Matches are distributed among these distances:
25 9 0.15
26 21 0.35
27 12 0.20
28 8 0.13
29 10 0.17
ACGTcount: A:0.34, C:0.08, G:0.18, T:0.40
Consensus pattern (26 bp):
AAACCAAGGGTATTTCTATAATTTTG
Found at i:77627010 original size:107 final size:106
Alignment explanation
Indices: 77626834--77627037 Score: 234
Period size: 107 Copynumber: 1.9 Consensus size: 106
77626824 TCATCCTACA
* **
77626834 AGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGAAACCAATGGTATTTCTA
1 AGGGTATTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTACAAACCAATGGTATTTCTA
* *
77626899 TAATTTTTAGAAAGTCAAGGGTATTTT-GTAATTTTGTAAATC
66 TAA-TTTTACAAACT-AAGGGTATTTTGGTAATTTTGTAAATC
* * *** *
77626941 AGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTC-GTAATTTCACAAACCACTGGTATTT-T
1 AGGGTATTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTT-ACAAACCAATGGTATTTCT
* *
77627004 GGTAATTTTACAAACTAGGGGTATTTTGGTAATT
65 -ATAATTTTACAAACTAAGGGTATTTTGGTAATT
77627038 CTATCCTACA
Statistics
Matches: 81, Mismatches: 13, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
105 10 0.12
106 23 0.28
107 48 0.59
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (106 bp):
AGGGTATTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTACAAACCAATGGTATTTCTA
TAATTTTACAAACTAAGGGTATTTTGGTAATTTTGTAAATC
Found at i:77627016 original size:27 final size:26
Alignment explanation
Indices: 77626834--77627037 Score: 128
Period size: 27 Copynumber: 7.7 Consensus size: 26
77626824 TCATCCTACA
* * *
77626834 AGGGTGTTTTGGTAAATCTACAAACC
1 AGGGTATTTTGGTAATTTTACAAACC
** *
77626860 AAGGGTATTTCAGTAATTTT-GAAACC
1 -AGGGTATTTTGGTAATTTTACAAACC
* * * *
77626886 AATGGTATTTCT-ATAATTTTTAGAAAGTCA
1 -AGGGTATTT-TGGTAA-TTTTACAAA--CC
** *
77626916 AGGGTATTTT-GTAATTTTGTAAATC
1 AGGGTATTTTGGTAATTTTACAAACC
**
77626941 AGGGTATTTTGGTAATTTTACAAATTG
1 AGGGTATTTTGGTAATTTTACAAA-CC
* *
77626968 AGGGTA-TTTCGTAATTTCACAAACC
1 AGGGTATTTTGGTAATTTTACAAACC
* *
77626993 ACTGGTATTTTGGTAATTTTACAAACT
1 A-GGGTATTTTGGTAATTTTACAAACC
77627020 AGGGGTATTTTGGTAATT
1 A-GGGTATTTTGGTAATT
77627038 CTATCCTACA
Statistics
Matches: 139, Mismatches: 29, Indels: 18
0.75 0.16 0.10
Matches are distributed among these distances:
25 11 0.08
26 47 0.34
27 64 0.46
28 8 0.06
29 8 0.06
30 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (26 bp):
AGGGTATTTTGGTAATTTTACAAACC
Found at i:77627050 original size:27 final size:27
Alignment explanation
Indices: 77626942--77627064 Score: 101
Period size: 27 Copynumber: 4.6 Consensus size: 27
77626932 TTGTAAATCA
* *
77626942 GGGTATTTTGGTAATTTTACAAA-TTG
1 GGGTATTTTGGTAATTCTACAAACTAG
* * *
77626968 AGGGTA-TTTCGTAATT-TCACAAACCAC
1 -GGGTATTTTGGTAATTCT-ACAAACTAG
* *
77626995 TGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTCTACAAACTAG
**
77627022 GGGTATTTTGGTAATTCTATCCTAC-AG
1 GGGTATTTTGGTAATTCTA-CAAACTAG
*
77627049 GGGTATTTTAGTAATT
1 GGGTATTTTGGTAATT
77627065 TCACAATCGA
Statistics
Matches: 78, Mismatches: 13, Indels: 10
0.77 0.13 0.10
Matches are distributed among these distances:
25 1 0.01
26 18 0.23
27 55 0.71
28 4 0.05
ACGTcount: A:0.28, C:0.11, G:0.20, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTCTACAAACTAG
Found at i:77627206 original size:27 final size:27
Alignment explanation
Indices: 77627069--77627198 Score: 161
Period size: 27 Copynumber: 4.8 Consensus size: 27
77627059 GTAATTTCAC
*
77627069 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
* * *
77627096 AATTGAAGGTTAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
* ***
77627123 AATCGAGGGCAAAACAATAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
* * *
77627150 AATCGAGGGTGAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTTTGTA
77627177 AATCGAGGGTAAAATGGTAATT
1 AATCGAGGGTAAAATGGTAATT
77627199 CTACAAATTG
Statistics
Matches: 84, Mismatches: 19, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 84 1.00
ACGTcount: A:0.39, C:0.06, G:0.24, T:0.31
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTTTGTA
Found at i:77627212 original size:54 final size:54
Alignment explanation
Indices: 77627069--77627212 Score: 180
Period size: 54 Copynumber: 2.7 Consensus size: 54
77627059 GTAATTTCAC
* * * *
77627069 AATCGAGGGTAAAACGGTAATTTTGTAAATTGAAGGTTAAATGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTAAATTGAGGGTGAAATGGTAATTCTATA
* ** *
77627123 AATCGAGGGCAAAACAATAATTTTGTAAATCGAGGGTGAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTGTAAATTGAGGGTGAAATGGTAATTCTATA
* * **
77627177 AATCGAGGGTAAAATGGTAATTCTACAAATTGAGGG
1 AATCGAGGGTAAAACGGTAATTTTGTAAATTGAGGG
77627213 CATTTCAGTA
Statistics
Matches: 74, Mismatches: 16, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
54 74 1.00
ACGTcount: A:0.39, C:0.07, G:0.24, T:0.30
Consensus pattern (54 bp):
AATCGAGGGTAAAACGGTAATTTTGTAAATTGAGGGTGAAATGGTAATTCTATA
Found at i:77627225 original size:81 final size:81
Alignment explanation
Indices: 77627069--77627232 Score: 184
Period size: 81 Copynumber: 2.0 Consensus size: 81
77627059 GTAATTTCAC
* * * * * **
77627069 AATCGAGGGTAAAACGGTAATTTTGTAAATTGAAGGTTAAATGGTAATTTTGTAAATCGAGGGCA
1 AATCGAGGGTAAAACGGTAATTCTATAAATCGAAGGTAAAATGGTAATTCTACAAATCGAGGGCA
*
77627134 AAACAATAATTTTGTA
66 AAACAATAATTTGGTA
* * * *
77627150 AATCGAGGGTGAAATGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTACAAATTGAGGGCA
1 AATCGAGGGTAAAACGGTAATTCTATAAATCGAAGGTAAAATGGTAATTCTACAAATCGAGGGCA
*** *
77627215 TTTCAGTAATTTGGTA
66 AAACAATAATTTGGTA
77627231 AA
1 AA
77627233 CTAAAGTATT
Statistics
Matches: 67, Mismatches: 16, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
81 67 1.00
ACGTcount: A:0.38, C:0.07, G:0.23, T:0.31
Consensus pattern (81 bp):
AATCGAGGGTAAAACGGTAATTCTATAAATCGAAGGTAAAATGGTAATTCTACAAATCGAGGGCA
AAACAATAATTTGGTA
Found at i:77628610 original size:41 final size:41
Alignment explanation
Indices: 77628565--77628682 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
77628555 TGAAAGATAA
77628565 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
77628606 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
77628636 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
77628677 ATGTAG
1 ATGTAG
77628683 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:77628621 original size:71 final size:71
Alignment explanation
Indices: 77628533--77628696 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
77628523 GAGATGTATC
77628533 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
77628598 AGGACA
66 AGGACA
77628604 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
77628669 AGGACA
66 AGGACA
77628675 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
77628697 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:77635713 original size:41 final size:41
Alignment explanation
Indices: 77635668--77635785 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
77635658 TGAAAGATAA
77635668 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
77635709 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
77635739 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
77635780 ATGTAG
1 ATGTAG
77635786 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:77635724 original size:71 final size:71
Alignment explanation
Indices: 77635636--77635799 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
77635626 GAGATGTATC
77635636 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
77635701 AGGACA
66 AGGACA
77635707 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
77635772 AGGACA
66 AGGACA
77635778 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
77635800 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:77638950 original size:31 final size:31
Alignment explanation
Indices: 77638905--77638987 Score: 134
Period size: 31 Copynumber: 2.7 Consensus size: 31
77638895 TCAGTCTCGA
*
77638905 CATAT-ACTGCGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
77638935 CATATCACTGGGCCGAAGCCTTTTCATATAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
77638966 CATATCACT-GGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
77638988 ACTGTAAGCG
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
30 18 0.36
31 32 0.64
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.30
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:77639235 original size:25 final size:25
Alignment explanation
Indices: 77639207--77639276 Score: 106
Period size: 25 Copynumber: 2.8 Consensus size: 25
77639197 CAATTTTAAT
77639207 AACTGGGGCAAAGCCC-TTTCTGATA
1 AACTGGGGCAAAGCCCTTTTC-GATA
*
77639232 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
77639257 AACTGGGGCAGAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
77639277 AGCACTTCCT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
25 38 0.90
26 4 0.10
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.24
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:77640107 original size:27 final size:27
Alignment explanation
Indices: 77640077--77640178 Score: 73
Period size: 27 Copynumber: 3.7 Consensus size: 27
77640067 GGGCGTATTC
77640077 GTCATTTTACCATATAAGGG-TATTACG
1 GTCATTTTACC-TATAAGGGATATTACG
* * *
77640104 GTCACTTTACCCTACAAGGGGCT-TTACG
1 GTCATTTTA-CCTATAA-GGGATATTACG
* * ***
77640132 GTCTTTTTACCTATTAGGGATATTTTA
1 GTCATTTTACCTATAAGGGATATTACG
*
77640159 GTCATTTCATCCTATAAGGG
1 GTCATTTTA-CCTATAAGGG
77640179 TGTTTTGGTA
Statistics
Matches: 57, Mismatches: 13, Indels: 9
0.72 0.16 0.11
Matches are distributed among these distances:
26 4 0.07
27 26 0.46
28 26 0.46
29 1 0.02
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.38
Consensus pattern (27 bp):
GTCATTTTACCTATAAGGGATATTACG
Found at i:77640309 original size:27 final size:27
Alignment explanation
Indices: 77640174--77640382 Score: 127
Period size: 27 Copynumber: 7.7 Consensus size: 27
77640164 TTCATCCTAT
* * * *
77640174 AAGGGTGTTTTGGTAAATCTACAAACC
1 AAGGGTATTTTGGTAATTTTACAAATC
*** ** *
77640201 AAGGGTATTTCAATAATTTTGGAAACC
1 AAGGGTATTTTGGTAATTTTACAAATC
* * *
77640228 AATGGTATTTCT-ATAATTTTTAGAAAGTC
1 AAGGGTATTT-TGGTAA-TTTTACAAA-TC
**
77640257 AAGGGTATTTCT-GTAATTTTGTAAATC
1 AAGGGTATTT-TGGTAATTTTACAAATC
* *
77640284 AGGGGTATTTTGGTAATTTTACAAATT
1 AAGGGTATTTTGGTAATTTTACAAATC
* * ** * *
77640311 GACGGTATTTCAGTAATTTCACAAACC
1 AAGGGTATTTTGGTAATTTTACAAATC
**
77640338 ACTGGTATTTTGGTAATTTTACAAA-C
1 AAGGGTATTTTGGTAATTTTACAAATC
77640364 TAAGGGTATTTTGGTAATT
1 -AAGGGTATTTTGGTAATT
77640383 CTATCCTACA
Statistics
Matches: 141, Mismatches: 36, Indels: 10
0.75 0.19 0.05
Matches are distributed among these distances:
26 2 0.01
27 109 0.77
28 15 0.11
29 15 0.11
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (27 bp):
AAGGGTATTTTGGTAATTTTACAAATC
Found at i:77640372 original size:54 final size:54
Alignment explanation
Indices: 77640181--77640374 Score: 183
Period size: 54 Copynumber: 3.6 Consensus size: 54
77640171 TATAAGGGTG
* * * * *
77640181 TTTTGGTAAATCTACAAACCAAGGGTATTTCAATAATTTTGGAAACCAATGGTA
1 TTTTGGTAATTTTACAAACTAAGGGTATTTCAGTAATTTTGCAAACCAATGGTA
* * * * * * **
77640235 TTTCT-ATAATTTTTAGAAAGTCAAGGGTATTTCTGTAATTTTGTAAATCAGGGGTA
1 TTT-TGGTAA-TTTTACAAACT-AAGGGTATTTCAGTAATTTTGCAAACCAATGGTA
* * * ** *
77640291 TTTTGGTAATTTTACAAATTGACGGTATTTCAGTAATTTCACAAACCACTGGTA
1 TTTTGGTAATTTTACAAACTAAGGGTATTTCAGTAATTTTGCAAACCAATGGTA
77640345 TTTTGGTAATTTTACAAACTAAGGGTATTT
1 TTTTGGTAATTTTACAAACTAAGGGTATTT
77640375 TGGTAATTCT
Statistics
Matches: 109, Mismatches: 27, Indels: 8
0.76 0.19 0.06
Matches are distributed among these distances:
54 58 0.53
55 17 0.16
56 34 0.31
ACGTcount: A:0.32, C:0.11, G:0.17, T:0.40
Consensus pattern (54 bp):
TTTTGGTAATTTTACAAACTAAGGGTATTTCAGTAATTTTGCAAACCAATGGTA
Found at i:77642121 original size:39 final size:40
Alignment explanation
Indices: 77642074--77642217 Score: 175
Period size: 39 Copynumber: 3.6 Consensus size: 40
77642064 AATGTTCGAG
77642074 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA
* * *
77642113 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA
* ** *
77642152 TGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTA
1 TGATATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA
** * *
77642192 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAGTCCCGAAGGC
77642218 GTTTGAACGA
Statistics
Matches: 89, Mismatches: 15, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
39 51 0.57
40 38 0.43
ACGTcount: A:0.24, C:0.23, G:0.30, T:0.24
Consensus pattern (40 bp):
TGATATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA
Found at i:77647774 original size:39 final size:40
Alignment explanation
Indices: 77647727--77647870 Score: 175
Period size: 39 Copynumber: 3.6 Consensus size: 40
77647717 AATGTTCGAG
77647727 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA
* * *
77647766 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA
* ** *
77647805 TGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTA
1 TGATATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA
** * *
77647845 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAGTCCCGAAGGC
77647871 GTTTGAACGA
Statistics
Matches: 89, Mismatches: 15, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
39 51 0.57
40 38 0.43
ACGTcount: A:0.24, C:0.23, G:0.30, T:0.24
Consensus pattern (40 bp):
TGATATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA
Found at i:77649292 original size:27 final size:27
Alignment explanation
Indices: 77649262--77649390 Score: 159
Period size: 27 Copynumber: 4.8 Consensus size: 27
77649252 GGGTGTTACA
*
77649262 GGTAATTTTGTAAATTGAGGGTAAAAT
1 GGTAATTTTGTAAATCGAGGGTAAAAT
* *
77649289 GGTAATTTTGTAAATCGAGGGCAAAAC
1 GGTAATTTTGTAAATCGAGGGTAAAAT
* *
77649316 GGTAATTTTGTAAATCGATGGTGAAAT
1 GGTAATTTTGTAAATCGAGGGTAAAAT
* * *
77649343 GGTAATTCTATAAATCAAGGGTAAAAT
1 GGTAATTTTGTAAATCGAGGGTAAAAT
* **
77649370 GGTAATTCTACAAATCGAGGG
1 GGTAATTTTGTAAATCGAGGG
77649391 CATTTCAGTA
Statistics
Matches: 88, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 88 1.00
ACGTcount: A:0.37, C:0.07, G:0.25, T:0.31
Consensus pattern (27 bp):
GGTAATTTTGTAAATCGAGGGTAAAAT
Found at i:77652886 original size:18 final size:18
Alignment explanation
Indices: 77652863--77652901 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
77652853 TCTATTTTTT
77652863 TAATGAAAATAGACTCAC
1 TAATGAAAATAGACTCAC
*
77652881 TAATGAAAATAGGCTCAC
1 TAATGAAAATAGACTCAC
77652899 TAA
1 TAA
77652902 GGAATCTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.49, C:0.15, G:0.13, T:0.23
Consensus pattern (18 bp):
TAATGAAAATAGACTCAC
Found at i:77657202 original size:40 final size:41
Alignment explanation
Indices: 77657133--77657227 Score: 122
Period size: 40 Copynumber: 2.4 Consensus size: 41
77657123 ACTAAGTTTG
* * *
77657133 GCACTTAGTGTGCG-TTTTGAGATAGCTTCGGCTATATATA
1 GCACTTAGTGTGCGAATTAGAGATAACTTCGGCTATATATA
* *
77657173 GCACTTAGTGTGCGAATTAGA-ATAACTTCGGCTATATGTG
1 GCACTTAGTGTGCGAATTAGAGATAACTTCGGCTATATATA
*
77657213 GCACTAAGTGTGCGA
1 GCACTTAGTGTGCGA
77657228 TACTGAGATA
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
40 44 0.92
41 4 0.08
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.33
Consensus pattern (41 bp):
GCACTTAGTGTGCGAATTAGAGATAACTTCGGCTATATATA
Found at i:77657769 original size:15 final size:16
Alignment explanation
Indices: 77657742--77657773 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
77657732 TAGTGTTACA
77657742 GTTGAATAAAGATAAT
1 GTTGAATAAAGATAAT
77657758 GTTGAA-AAAGATAAT
1 GTTGAATAAAGATAAT
77657773 G
1 G
77657774 CTCAGAACAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.62
16 6 0.38
ACGTcount: A:0.50, C:0.00, G:0.22, T:0.28
Consensus pattern (16 bp):
GTTGAATAAAGATAAT
Found at i:77662514 original size:40 final size:39
Alignment explanation
Indices: 77662427--77662516 Score: 92
Period size: 40 Copynumber: 2.3 Consensus size: 39
77662417 TGTGTGTTTC
* * *
77662427 GAGATAGCTTCGGCTATATATAGCACTTAGTGTGCGAAT
1 GAGATAACTTCGGCTATATATAGCACTAAGTGTACGAAT
* * *
77662466 TAGAATAACTTCGGCTATATGTGGCA-TAAGTGTACGATACT
1 GAG-ATAACTTCGGCTATATATAGCACTAAGTGTACGA-A-T
77662507 GAGATAACTT
1 GAGATAACTT
77662517 AGGTTTAATG
Statistics
Matches: 41, Mismatches: 7, Indels: 5
0.77 0.13 0.09
Matches are distributed among these distances:
39 11 0.27
40 27 0.66
41 3 0.07
ACGTcount: A:0.31, C:0.14, G:0.23, T:0.31
Consensus pattern (39 bp):
GAGATAACTTCGGCTATATATAGCACTAAGTGTACGAAT
Found at i:77671089 original size:40 final size:40
Alignment explanation
Indices: 77671034--77671243 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
77671024 AACATTGGAA
77671034 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
77671074 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
77671114 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
77671154 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
77671193 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
77671234 CTATATCCGG
1 ATATATCCGG
77671244 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:77679224 original size:40 final size:40
Alignment explanation
Indices: 77679169--77679378 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
77679159 AACATTGGAA
77679169 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
77679209 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
77679249 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
77679289 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
77679328 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
77679369 CTATATCCGG
1 ATATATCCGG
77679379 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:77682175 original size:40 final size:39
Alignment explanation
Indices: 77682111--77682318 Score: 179
Period size: 40 Copynumber: 5.2 Consensus size: 39
77682101 TCTTCAGAAT
* **
77682111 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAA-TGCCTTCGGGTC
* * *** *
77682150 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCAC-AATGCCTTCGGGTC
77682190 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCAC-AATGCCTTCGGGTC
* * * * *
77682230 TTAGCCCGGATATAATC-ACTAGAATAAATGCCTTTGGGAC
1 TTAGCCCGGATATAA-CAACTCGCA-CAATGCCTTCGGGTC
* * *
77682270 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTCGCA-CAATGCCTTCGGGTC
77682310 TTAGCCCGG
1 TTAGCCCGG
77682319 GTATCATTCA
Statistics
Matches: 143, Mismatches: 22, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.02
40 137 0.96
41 3 0.02
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (39 bp):
TTAGCCCGGATATAACAACTCGCACAATGCCTTCGGGTC
Done.