Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 247 of 318
Found at i:77682259 original size:80 final size:78
Alignment explanation
Indices: 77682111--77682318 Score: 229
Period size: 80 Copynumber: 2.6 Consensus size: 78
77682101 TCTTCAGAAT
* * * ** * *
77682111 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCAC
1 TTAGCCCGGATATAA-CACTAGCACAA-TGCCTTCGGGTCTTAGCCCGGATATAATAACTAGAAC
*
77682175 AAATGCCTTCGGGTC
64 AAATGCCTTCGGGAC
* * *
77682190 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAATCACTAGAAT
1 TTAGCCCGGATATAAC-ACTAGCAC-AATGCCTTCGGGTCTTAGCCCGGATATAATAACTAGAAC
*
77682255 AAATGCCTTTGGGAC
64 AAATGCCTTCGGGAC
* *
77682270 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGG
1 TTAGCCCGGATATAA-CACTAGCA-CAATGCCTTCGGGTCTTAGCCCGG
77682319 GTATCATTCA
Statistics
Matches: 109, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
79 5 0.05
80 101 0.93
81 3 0.03
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (78 bp):
TTAGCCCGGATATAACACTAGCACAATGCCTTCGGGTCTTAGCCCGGATATAATAACTAGAACAA
ATGCCTTCGGGAC
Found at i:77690263 original size:40 final size:40
Alignment explanation
Indices: 77690214--77690421 Score: 240
Period size: 40 Copynumber: 5.2 Consensus size: 40
77690204 TCTTCGGAAT
* * *
77690214 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* * ** * *
77690253 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* *
77690293 TTAGCCCGGATATAA-CAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAATC-ACTAGCACAAATGCCTTCGGGTC
* * *
77690333 TTAGCCCAGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* * *
77690373 TTAGCCCGGATATAATCACCAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
77690413 TTAGCCCGG
1 TTAGCCCGG
77690422 GTATCATTCA
Statistics
Matches: 143, Mismatches: 23, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 3 0.02
40 139 0.97
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
Found at i:77692340 original size:40 final size:41
Alignment explanation
Indices: 77692278--77692532 Score: 310
Period size: 40 Copynumber: 6.4 Consensus size: 41
77692268 CGGATGCTAA
* * * * *
77692278 CGGGTTAAGTCCCAAAGACATTTGTGCTAGTGATTAAT-TC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATATC
*
77692318 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATATC
*
77692358 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATATC
*
77692398 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATATC
* *
77692438 CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGAC-CATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATATC
* * * * *
77692478 CGGGCTAAGACCCGATGGC-CTTGTGCGAGTG-GTTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATATC
*
77692517 C-GGCTAAATCCCGAAG
1 CGGGCTAAGTCCCGAAG
77692533 ATAATTGGGT
Statistics
Matches: 195, Mismatches: 17, Indels: 8
0.89 0.08 0.04
Matches are distributed among these distances:
38 12 0.06
39 18 0.09
40 165 0.85
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (41 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATATC
Found at i:77702486 original size:47 final size:47
Alignment explanation
Indices: 77702427--77702693 Score: 435
Period size: 47 Copynumber: 5.7 Consensus size: 47
77702417 GTGAATGTGT
* ** *
77702427 ATATATGAGATAAGGCCGAATCCCCAATGAGATGAATGTGAACATGC
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
77702474 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
77702521 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
*
77702568 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGC
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
* * *
77702615 ATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGC
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
* * *
77702662 ATATATGTGGTAAAGCCGAATGGCTAATGTGA
1 ATATATGTGATAAGGCCGAATGGCCAATGTGA
77702694 AATGTGTATG
Statistics
Matches: 206, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 206 1.00
ACGTcount: A:0.34, C:0.13, G:0.28, T:0.25
Consensus pattern (47 bp):
ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
Found at i:77702506 original size:22 final size:22
Alignment explanation
Indices: 77702478--77702600 Score: 74
Period size: 22 Copynumber: 5.3 Consensus size: 22
77702468 ACATGCATAT
77702478 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * *
77702500 ATGTGATGAATG-TGAACAT-GCATA
1 ATGTGAT-AAGGCCG-A-ATGGC-CA
77702524 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
* * *
77702547 ATGTGATGAATG-TGAACAT-GCATA
1 ATGTGAT-AAGGCCG-A-ATGGC-CA
77702571 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
77702594 ATGTGAT
1 ATGTGAT
77702601 GAATGTGAGC
Statistics
Matches: 75, Mismatches: 12, Indels: 28
0.65 0.10 0.24
Matches are distributed among these distances:
22 23 0.31
23 18 0.24
24 18 0.24
25 16 0.21
ACGTcount: A:0.33, C:0.13, G:0.28, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:77702649 original size:25 final size:25
Alignment explanation
Indices: 77702574--77702649 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
77702564 ATGCATATAT
77702574 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
77702599 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
77702621 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
77702646 GTGA
1 GTGA
77702650 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:77702726 original size:48 final size:48
Alignment explanation
Indices: 77702663--77702778 Score: 214
Period size: 48 Copynumber: 2.4 Consensus size: 48
77702653 TGAACATGCA
*
77702663 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATGTGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
77702711 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
*
77702759 CATATGTGGTAAAGCCGAAT
1 TATATGTGGTAAAGCCGAAT
77702779 TAGAGTTGTA
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 66 1.00
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:77709046 original size:46 final size:45
Alignment explanation
Indices: 77708876--77709087 Score: 189
Period size: 46 Copynumber: 4.6 Consensus size: 45
77708866 TTGTGTGTGC
* * * *
77708876 TAGTGTAAGACATGTCTGGGACATGCATCGACCAC-ATTATGGAAGC
1 TAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GAT-GAAGT
*
77708922 TAGTGTAAGACCATGTCTGGGACATGGCATCGGCACT-GAGACG-AGT
1 TAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-CTCGAGATGAAGT
* *
77708968 GCTAATGTAAGACATGTCTAGGACATGCATCGGCCTCGAGATGTAAGT
1 --TAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATG-AAGT
* * *
77709016 TAGTGTAAGACATGTCTCGGACATGCATCGG-CTACGAAATAATAGT
1 TAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGA-AGT
* *
77709062 CAGTGCAAGACCATGTCTGGGACATG
1 TAGTGTAAGA-CATGTCTGGGACATG
77709088 GCATTGACTT
Statistics
Matches: 139, Mismatches: 15, Indels: 23
0.79 0.08 0.13
Matches are distributed among these distances:
45 5 0.04
46 70 0.50
47 42 0.30
48 20 0.14
49 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (45 bp):
TAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGAAGT
Found at i:77713544 original size:17 final size:19
Alignment explanation
Indices: 77713512--77713546 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
77713502 TAATAAATAT
77713512 TATATGTTTAACTATATTC
1 TATATGTTTAACTATATTC
77713531 TATATG-TTAA-TATATT
1 TATATGTTTAACTATATT
77713547 ATTAAATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 4 0.25
19 6 0.38
ACGTcount: A:0.34, C:0.06, G:0.06, T:0.54
Consensus pattern (19 bp):
TATATGTTTAACTATATTC
Found at i:77714273 original size:17 final size:19
Alignment explanation
Indices: 77714253--77714293 Score: 68
Period size: 17 Copynumber: 2.3 Consensus size: 19
77714243 ACTATATATA
77714253 TTTTAAATTTTTT-TAAT-
1 TTTTAAATTTTTTATAATG
77714270 TTTTAAATTTTTTATAATG
1 TTTTAAATTTTTTATAATG
77714289 TTTTA
1 TTTTA
77714294 GTACCTTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 13 0.59
18 4 0.18
19 5 0.23
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.68
Consensus pattern (19 bp):
TTTTAAATTTTTTATAATG
Found at i:77714585 original size:29 final size:30
Alignment explanation
Indices: 77714527--77714596 Score: 72
Period size: 29 Copynumber: 2.3 Consensus size: 30
77714517 GATTTATGAT
* *
77714527 TGATTAATTAATTTTGTATTAAGGAATTAAG
1 TGATT-ATAAATTTTGTATTAAGCAATTAAG
*
77714558 TGATTATAAATTTTG-ATTAA-CAACTTAAT
1 TGATTATAAATTTTGTATTAAGCAA-TTAAG
*
77714587 TGATTTTAAA
1 TGATTATAAA
77714597 ATTATTTTAC
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
28 2 0.06
29 18 0.53
30 9 0.26
31 5 0.15
ACGTcount: A:0.40, C:0.03, G:0.11, T:0.46
Consensus pattern (30 bp):
TGATTATAAATTTTGTATTAAGCAATTAAG
Found at i:77716219 original size:1 final size:1
Alignment explanation
Indices: 77716215--77716241 Score: 54
Period size: 1 Copynumber: 27.0 Consensus size: 1
77716205 CCCCCCTCCC
77716215 AAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAA
77716242 CAGGTATACA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 26 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:77717561 original size:20 final size:20
Alignment explanation
Indices: 77717538--77717596 Score: 63
Period size: 20 Copynumber: 3.1 Consensus size: 20
77717528 TTAATTTATT
77717538 ATTTTTGAATTAAATTAAAC
1 ATTTTTGAATTAAATTAAAC
* **
77717558 A-TTTTG--TT-AATTTATT
1 ATTTTTGAATTAAATTAAAC
77717574 ATTTTTGAATTAAATTAAAC
1 ATTTTTGAATTAAATTAAAC
77717594 ATT
1 ATT
77717597 ATGGTATTAC
Statistics
Matches: 29, Mismatches: 6, Indels: 8
0.67 0.14 0.19
Matches are distributed among these distances:
16 6 0.21
17 7 0.24
19 7 0.24
20 9 0.31
ACGTcount: A:0.39, C:0.03, G:0.05, T:0.53
Consensus pattern (20 bp):
ATTTTTGAATTAAATTAAAC
Found at i:77717562 original size:36 final size:36
Alignment explanation
Indices: 77717522--77717596 Score: 150
Period size: 36 Copynumber: 2.1 Consensus size: 36
77717512 GTTTCTAATA
77717522 ATTTTGTTAATTTATTATTTTTGAATTAAATTAAAC
1 ATTTTGTTAATTTATTATTTTTGAATTAAATTAAAC
77717558 ATTTTGTTAATTTATTATTTTTGAATTAAATTAAAC
1 ATTTTGTTAATTTATTATTTTTGAATTAAATTAAAC
77717594 ATT
1 ATT
77717597 ATGGTATTAC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.36, C:0.03, G:0.05, T:0.56
Consensus pattern (36 bp):
ATTTTGTTAATTTATTATTTTTGAATTAAATTAAAC
Found at i:77717579 original size:17 final size:17
Alignment explanation
Indices: 77717523--77717580 Score: 55
Period size: 17 Copynumber: 3.3 Consensus size: 17
77717513 TTTCTAATAA
77717523 TTTTGTTAATTTATTAT
1 TTTTGTTAATTTATTAT
* * *
77717540 TTTTGAATTAAATTA-AACA
1 TTTTG--TTAATTTATTA-T
77717559 TTTTGTTAATTTATTAT
1 TTTTGTTAATTTATTAT
77717576 TTTTG
1 TTTTG
77717581 AATTAAATTA
Statistics
Matches: 31, Mismatches: 6, Indels: 8
0.69 0.13 0.18
Matches are distributed among these distances:
17 17 0.55
18 2 0.06
19 12 0.39
ACGTcount: A:0.29, C:0.02, G:0.07, T:0.62
Consensus pattern (17 bp):
TTTTGTTAATTTATTAT
Found at i:77717605 original size:31 final size:32
Alignment explanation
Indices: 77717534--77717605 Score: 83
Period size: 36 Copynumber: 2.2 Consensus size: 32
77717524 TTTGTTAATT
* *
77717534 TATTATTTTTGAATTAAATTAAACATTTTGTTAATT
1 TATTATTTTTGAATTAAATTAAACATTATG----TG
77717570 TATTATTTTTGAATTAAATTAAACATTATG-G
1 TATTATTTTTGAATTAAATTAAACATTATGTG
77717601 TATTA
1 TATTA
77717606 CATAATATAA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
31 5 0.15
36 29 0.85
ACGTcount: A:0.38, C:0.03, G:0.07, T:0.53
Consensus pattern (32 bp):
TATTATTTTTGAATTAAATTAAACATTATGTG
Found at i:77721140 original size:25 final size:25
Alignment explanation
Indices: 77721112--77721161 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
77721102 AACAAAGGAA
* *
77721112 AGTATTTTCACATAACATAGTGTAT
1 AGTATTTGCACATAACATAGCGTAT
77721137 AGTATTTGCACATAACATAGCGTAT
1 AGTATTTGCACATAACATAGCGTAT
77721162 CAATCTTGCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (25 bp):
AGTATTTGCACATAACATAGCGTAT
Found at i:77726132 original size:40 final size:40
Alignment explanation
Indices: 77726004--77726134 Score: 138
Period size: 40 Copynumber: 3.3 Consensus size: 40
77725994 TATGCTGGAA
* * * * *
77726004 ATTATATCCGGGTTAAGACCCGAAGACAATTGCGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
77726044 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
77726084 ATTTTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
77726124 ATTATATCCGG
1 ATTATATCCGG
77726135 TTATATTCCG
Statistics
Matches: 71, Mismatches: 19, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
39 1 0.01
40 70 0.99
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:77730048 original size:43 final size:43
Alignment explanation
Indices: 77730000--77730283 Score: 478
Period size: 43 Copynumber: 6.6 Consensus size: 43
77729990 CCGGCATTAC
* *
77730000 GCCTGCTAGGCACAAAGGCCCGAATACACATCACCGGCAGGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
77730043 GCCTGCTAGGCACGAAGGCCCGAATACACATCACTGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
77730086 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
77730129 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* *
77730172 GCCTGCTAGGCACAAAGGCCCAAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* * *
77730215 GCCTGCTAGGCACAAAGGCCTGAATACACATCACCAGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
77730258 ACCTGCTAGGCACGAAGGCCCGAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
77730284 TAATACCAGC
Statistics
Matches: 227, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 227 1.00
ACGTcount: A:0.32, C:0.33, G:0.24, T:0.10
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
Found at i:77730330 original size:38 final size:38
Alignment explanation
Indices: 77730276--77730459 Score: 278
Period size: 38 Copynumber: 4.8 Consensus size: 38
77730266 GGCACGAAGG
* * * *
77730276 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAT
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
**
77730314 CCCTAATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
77730352 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* *
77730390 CCCGGATATAATACCAGAACGAAGCCTACGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
**
77730428 CCCGGATATTTTACCAGCACGAAGCCTGCGGG
1 CCCGGATATAATACCAGCACGAAGCCTGCGGG
77730460 TCTTTAAGCC
Statistics
Matches: 134, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 134 1.00
ACGTcount: A:0.31, C:0.27, G:0.22, T:0.20
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
Found at i:77732205 original size:46 final size:46
Alignment explanation
Indices: 77732155--77732328 Score: 201
Period size: 46 Copynumber: 3.8 Consensus size: 46
77732145 GTTGAGCATT
*
77732155 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTC
* * * *
77732201 CGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CGTC
* * *
77732248 CGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTC
* *
77732294 CGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
77732329 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 61 0.57
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTC
Found at i:77732319 original size:93 final size:93
Alignment explanation
Indices: 77732150--77732320 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
77732140 GGATGGTTGA
* * * *
77732150 GCATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
77732215 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
77732243 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
*
77732308 TGAGTCTGAGTTC
66 TGAGTCCGAGTTC
77732321 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:77734220 original size:2 final size:2
Alignment explanation
Indices: 77734213--77734255 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
77734203 TTTCAAAATT
77734213 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
77734255 T
1 T
77734256 TCAACTTTCA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:77738469 original size:43 final size:43
Alignment explanation
Indices: 77738421--77739134 Score: 1131
Period size: 43 Copynumber: 16.6 Consensus size: 43
77738411 CCGGCATTAC
*
77738421 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGACACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
77738464 GCCTGCTAGGCACGAAAGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* *
77738507 GCCTGCTAGGCACGAAAGCCCGAATACACATCACCAGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* *
77738550 GCCTGCTAGGCACAAAGGCCCGAATACACATAACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* *
77738593 GCCTGCTAGGCACGAAGGCCCGAATATACATCACCGGCAAGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
** *
77738636 GCCTGCTAGGCACGAAGGCTTGAATACACATCACCGGCAAGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* **
77738679 GGCTGCTAGGCACGAAGGCTTGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* * *
77738722 GGCTGCTAGGCACGAAGGCCTGAATACACATAACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* *
77738765 GCCTGCTAGGCACGAAGGCTCGAATATACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* * * * *
77738808 GCCTGCTTGGCACGAAGGCCTGAATACACAACACTGGCATGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
77738851 GCCTGCTAGGCACGAAGGCTCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
77738894 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCATGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* * *
77738937 GCCTGCTAGGCACGAATGCTCGAATACACATCACCGGCACCAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* *
77738980 GCTTGCTAGGCACGAAGGCCCGAATATACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
77739023 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGTACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
77739066 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
77739109 ACCTGCTAGGCACGAAGGCCCGAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
77739135 TAATACCAGC
Statistics
Matches: 619, Mismatches: 52, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 619 1.00
ACGTcount: A:0.32, C:0.32, G:0.25, T:0.12
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
Found at i:77739174 original size:38 final size:37
Alignment explanation
Indices: 77739127--77739272 Score: 202
Period size: 38 Copynumber: 3.8 Consensus size: 37
77739117 GGCACGAAGG
* * *
77739127 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAC
1 CCCG-ATATAATACCAGCACGAAGCCTGCGGGATTTAA
77739165 CCCTGATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 CCC-GATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
77739203 CCCGGATATAATACCAGAACGAAGCCTGCGGGATTTAA
1 CCC-GATATAATACCAGCACGAAGCCTGCGGGATTTAA
**
77739241 CCCGAATATTTTACCAGCACGAAGCCTGCGGG
1 CCCG-ATATAATACCAGCACGAAGCCTGCGGG
77739273 TCTTTAAGCC
Statistics
Matches: 98, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
37 1 0.01
38 96 0.98
39 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.23, T:0.20
Consensus pattern (37 bp):
CCCGATATAATACCAGCACGAAGCCTGCGGGATTTAA
Found at i:77747343 original size:21 final size:20
Alignment explanation
Indices: 77747313--77747351 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
77747303 TAAAACTTGT
77747313 ATAACTATCATCAAACATTC
1 ATAACTATCATCAAACATTC
*
77747333 ATAATCTATCATTAAACAT
1 ATAA-CTATCATCAAACAT
77747352 CAAAATACTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (20 bp):
ATAACTATCATCAAACATTC
Found at i:77755439 original size:40 final size:39
Alignment explanation
Indices: 77755280--77755440 Score: 245
Period size: 38 Copynumber: 4.2 Consensus size: 39
77755270 TGTGTATGAA
*
77755280 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
77755319 TGTGCGAGTTGTGATATCCGGGCTAAG-CCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
77755357 GGTGCGAGCTATGATATCCGGGCTAAG-CCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
77755395 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
77755435 TGTGCG
1 TGTGCG
77755441 GGTTACCATA
Statistics
Matches: 111, Mismatches: 9, Indels: 3
0.90 0.07 0.02
Matches are distributed among these distances:
38 69 0.62
39 26 0.23
40 16 0.14
ACGTcount: A:0.23, C:0.19, G:0.34, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:77755456 original size:40 final size:40
Alignment explanation
Indices: 77755297--77755476 Score: 145
Period size: 38 Copynumber: 4.6 Consensus size: 40
77755287 ATTGTGATAT
* *** *
77755297 CCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTGTGATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
* * * ** *
77755336 CCGGGCTAAG--CCGAAGGCAATGGTGCGAGCTATGATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
* *** *
77755374 CCGGGCTAAG--CCGAAGGCAATTGTGCGAGTTGTGATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
* *
77755412 CCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACCATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
* *
77755452 CCGGGCTATGTCCCGAAGGCGTTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
77755477 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 16, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
38 69 0.56
39 10 0.08
40 44 0.36
ACGTcount: A:0.22, C:0.22, G:0.33, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
Found at i:77763357 original size:40 final size:39
Alignment explanation
Indices: 77763197--77763359 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
77763187 TGTGTATGAA
*
77763197 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
77763236 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
77763275 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
77763314 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
77763354 TGTGCG
1 TGTGCG
77763360 GGTTACCATA
Statistics
Matches: 114, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 97 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:77763375 original size:40 final size:39
Alignment explanation
Indices: 77763197--77763390 Score: 253
Period size: 39 Copynumber: 4.9 Consensus size: 39
77763187 TGTGTATGAA
* *
77763197 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
77763236 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
77763275 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
77763314 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
77763354 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGGC
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGC
77763391 GTTTGAACGA
Statistics
Matches: 138, Mismatches: 16, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 97 0.70
40 41 0.30
ACGTcount: A:0.23, C:0.22, G:0.32, T:0.23
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:77769017 original size:40 final size:40
Alignment explanation
Indices: 77768958--77769165 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 40
77768948 CAATTGAATG
* * * *
77768958 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
77768998 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
77769038 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
77769078 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
77769118 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
77769158 ATATCCGG
1 ATATCCGG
77769166 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
39 2 0.01
40 136 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:77769096 original size:80 final size:80
Alignment explanation
Indices: 77768960--77769165 Score: 236
Period size: 80 Copynumber: 2.6 Consensus size: 80
77768950 ATTGAATGAT
* * ** * * *
77768960 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
77769024 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
77769040 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
77769105 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* *
77769120 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
77769166 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
79 2 0.02
80 103 0.96
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:77777051 original size:40 final size:40
Alignment explanation
Indices: 77776992--77777199 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 40
77776982 CAATTGAATG
* * * *
77776992 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
77777032 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
77777072 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
77777112 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
77777152 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
77777192 ATATCCGG
1 ATATCCGG
77777200 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
39 2 0.01
40 136 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:77777130 original size:80 final size:80
Alignment explanation
Indices: 77776994--77777199 Score: 236
Period size: 80 Copynumber: 2.6 Consensus size: 80
77776984 ATTGAATGAT
* * ** * * *
77776994 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
77777058 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
77777074 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
77777139 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* *
77777154 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
77777200 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
79 2 0.02
80 103 0.96
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:77783449 original size:38 final size:39
Alignment explanation
Indices: 77783347--77783530 Score: 274
Period size: 38 Copynumber: 4.9 Consensus size: 39
77783337 AATGTTCGAG
77783347 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGC--G--A
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
77783382 -GATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
77783420 TGATATCCGGGCTAAG-CCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
77783458 TGATA-CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
77783496 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
77783531 GGTTACCATA
Statistics
Matches: 137, Mismatches: 4, Indels: 11
0.90 0.03 0.07
Matches are distributed among these distances:
34 32 0.23
36 1 0.01
37 10 0.07
38 53 0.39
39 24 0.18
40 17 0.12
ACGTcount: A:0.24, C:0.22, G:0.32, T:0.22
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
Found at i:77783546 original size:40 final size:39
Alignment explanation
Indices: 77783347--77783560 Score: 253
Period size: 38 Copynumber: 5.6 Consensus size: 39
77783337 AATGTTCGAG
*
77783347 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAG--A
1 TGATAACCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
77783384 T-AT--CCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATAACCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
*
77783420 TGATATCCGGGCTAAG-CCGAAGGCAATTGTGCGAGCTA
1 TGATAACCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
77783458 TGAT-ACCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATAACCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* * * * *
77783496 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATAACCGGGCTAAG-CCCGAAGGCAATTGTGCGAGCTA
** *
77783536 CCATAACCGGGCTATGTCCCGAAGG
1 TGATAACCGGGCTAAG-CCCGAAGG
77783561 TGTTTTGAAC
Statistics
Matches: 156, Mismatches: 13, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
34 30 0.19
36 4 0.03
37 13 0.08
38 50 0.32
39 19 0.12
40 40 0.26
ACGTcount: A:0.24, C:0.22, G:0.32, T:0.21
Consensus pattern (39 bp):
TGATAACCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
Found at i:77790862 original size:39 final size:39
Alignment explanation
Indices: 77790813--77791032 Score: 298
Period size: 39 Copynumber: 5.6 Consensus size: 39
77790803 AATGTTCGAG
*
77790813 TGATATCCGGGCTAAGCTCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* *
77790852 TGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
77790891 TG-TATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* *
77790929 TGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
77790968 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
77791008 CCATAACCGGGCTATGTCCCGAAGG
1 TGATATCCGGGCTAAG-CCCGAAGG
77791033 TGTTTTGAAC
Statistics
Matches: 162, Mismatches: 17, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
38 37 0.23
39 85 0.52
40 40 0.25
ACGTcount: A:0.24, C:0.23, G:0.31, T:0.22
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:77790912 original size:77 final size:78
Alignment explanation
Indices: 77790813--77791032 Score: 316
Period size: 77 Copynumber: 2.8 Consensus size: 78
77790803 AATGTTCGAG
*
77790813 TGATATCCGGGCTAAGCTCGAAGGCAATTGTGCGAGTTATGATACCCGGGCTAAGCCCGAAGGCA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTATGATACCCGGGCTAAGCCCGAAGGCA
77790878 ATTGTGCGAGCTA
66 ATTGTGCGAGCTA
*
77790891 TG-TATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATACCCGGGCTAAGCCCGAAGGCA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTATGATACCCGGGCTAAGCCCGAAGGCA
* *
77790955 ATTGTGCGAGTTG
66 ATTGTGCGAGCTA
* * * ** * *
77790968 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGG
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTATGATACCCGGGCTAAG-CCCGAAGG
77791033 TGTTTTGAAC
Statistics
Matches: 127, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
77 73 0.57
78 14 0.11
79 32 0.25
80 8 0.06
ACGTcount: A:0.24, C:0.23, G:0.31, T:0.22
Consensus pattern (78 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTATGATACCCGGGCTAAGCCCGAAGGCA
ATTGTGCGAGCTA
Found at i:77795086 original size:58 final size:58
Alignment explanation
Indices: 77794996--77795111 Score: 223
Period size: 58 Copynumber: 2.0 Consensus size: 58
77794986 TACCGAAAGA
*
77794996 GTTAGAAAGAATTCATAATGTGTTTCATCAAAGATTGACATTTGGCCGGATATGACCT
1 GTTAGAAAGAATTCATAATATGTTTCATCAAAGATTGACATTTGGCCGGATATGACCT
77795054 GTTAGAAAGAATTCATAATATGTTTCATCAAAGATTGACATTTGGCCGGATATGACCT
1 GTTAGAAAGAATTCATAATATGTTTCATCAAAGATTGACATTTGGCCGGATATGACCT
77795112 ATGATGAGGA
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 57 1.00
ACGTcount: A:0.34, C:0.14, G:0.20, T:0.33
Consensus pattern (58 bp):
GTTAGAAAGAATTCATAATATGTTTCATCAAAGATTGACATTTGGCCGGATATGACCT
Found at i:77796612 original size:52 final size:51
Alignment explanation
Indices: 77796500--77796677 Score: 218
Period size: 52 Copynumber: 3.5 Consensus size: 51
77796490 ACTAGTGACT
* *
77796500 CAAGTGTGGTACTATTTGAAGGCCACTTTGAGAAG--AGATAGCTTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTGGTCA
*
77796549 CAAGTGTGGTACTATGTGAAAGCCACTTTGTGAAGAAAGATAGCTTTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGC-TTGGTCA
* * * * *
77796601 CAAGTCTGGTACTATGTGAAGGCCACTTTGTGAAG-AAGGTGGCTTTGACTA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTGGTC-A
* * *
77796652 CAAGGGTGGTACTCTGTGCAGGCCAC
1 CAAGTGTGGTACTATGTGAAGGCCAC
77796678 CAGGTATCCG
Statistics
Matches: 112, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
49 32 0.29
50 4 0.04
51 36 0.32
52 40 0.36
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (51 bp):
CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTGGTCA
Found at i:77796675 original size:51 final size:51
Alignment explanation
Indices: 77796495--77796677 Score: 212
Period size: 51 Copynumber: 3.6 Consensus size: 51
77796485 ATGTCACTAG
* *
77796495 TGACT-CAAGTGTGGTACTATTTGAAGGCCACTTTGAGAAG-AGATAGCTT
1 TGACTACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTT
* * *
77796544 GGTC-ACAAGTGTGGTACTATGTGAAAGCCACTTTGTGAAGAAAGATAGCTT
1 TGACTACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAG-AAGATAGCTT
* * * *
77796595 TG-GTCACAAGTCTGGTACTATGTGAAGGCCACTTTGTGAAGAAGGTGGCTT
1 TGACT-ACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTT
* * *
77796646 TGACTACAAGGGTGGTACTCTGTGCAGGCCAC
1 TGACTACAAGTGTGGTACTATGTGAAGGCCAC
77796678 CAGGTATCCG
Statistics
Matches: 112, Mismatches: 16, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
49 34 0.30
51 43 0.38
52 35 0.31
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (51 bp):
TGACTACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTT
Found at i:77802865 original size:40 final size:40
Alignment explanation
Indices: 77802820--77802986 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
77802810 CGGAATATAA
77802820 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
77802860 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
77802900 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
77802940 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
77802979 CCGGATAT
1 CCGGATAT
77802987 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:77802970 original size:80 final size:79
Alignment explanation
Indices: 77802820--77802986 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
77802810 CGGAATATAA
* *
77802820 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
77802885 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
77802900 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
77802962 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
77802979 CCGGATAT
1 CCGGATAT
77802987 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:77803835 original size:17 final size:19
Alignment explanation
Indices: 77803812--77803857 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
77803802 AAGAAGCATG
77803812 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
77803830 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
77803848 AATCATGCTC
1 AATCATGCTC
77803858 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:77810870 original size:40 final size:40
Alignment explanation
Indices: 77810825--77810991 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
77810815 CGGAATATAA
77810825 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
77810865 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
77810905 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
77810945 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
77810984 CCGGATAT
1 CCGGATAT
77810992 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:77810975 original size:80 final size:79
Alignment explanation
Indices: 77810825--77810991 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
77810815 CGGAATATAA
* *
77810825 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
77810890 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
77810905 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
77810967 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
77810984 CCGGATAT
1 CCGGATAT
77810992 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:77811840 original size:17 final size:19
Alignment explanation
Indices: 77811817--77811862 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
77811807 AAGAAGCATG
77811817 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
77811835 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
77811853 AATCATGCTC
1 AATCATGCTC
77811863 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:77819563 original size:79 final size:81
Alignment explanation
Indices: 77819463--77819651 Score: 267
Period size: 79 Copynumber: 2.4 Consensus size: 81
77819453 GCTACTCGTT
* * *
77819463 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGA-CTTA-ACCG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTC-GGATCTTAGACCG
77819526 GATATAGTCAC-TAGCA
65 GATATAGTCACTTAGCA
* * *
77819542 TAAATGCCTTCGGGACTTAGCCCGGATATAGTTACTAGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGATCTTAGACCGG
* *
77819607 ATGTAGTCGCTTAGCA
66 ATATAGTCACTTAGCA
*
77819623 CAAAAGCCTTCGGGACTTAGCCCGGATAT
1 CAAATGCCTTCGGGACTTAGCCCGGATAT
77819652 CATTCGAGTA
Statistics
Matches: 97, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
78 3 0.03
79 50 0.52
80 12 0.12
81 32 0.33
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGATCTTAGACCGG
ATATAGTCACTTAGCA
Found at i:77819634 original size:41 final size:40
Alignment explanation
Indices: 77819463--77819651 Score: 247
Period size: 40 Copynumber: 4.7 Consensus size: 40
77819453 GCTACTCGTT
* * * *
77819463 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCA
*
77819503 CAAATGCCTTCGGGACTTA-ACCGGATATAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCA
* *
77819542 TAAATGCCTTCGGGACTTAGCCCGGATATAGTTACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCA
* * *
77819582 CAAATGCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTCAC-TAGCA
*
77819623 CAAAAGCCTTCGGGACTTAGCCCGGATAT
1 CAAATGCCTTCGGGACTTAGCCCGGATAT
77819652 CATTCGAGTA
Statistics
Matches: 129, Mismatches: 16, Indels: 7
0.85 0.11 0.05
Matches are distributed among these distances:
39 37 0.29
40 62 0.48
41 27 0.21
42 3 0.02
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCA
Found at i:77822527 original size:41 final size:41
Alignment explanation
Indices: 77822482--77822599 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
77822472 TGAAAGATAA
77822482 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
77822523 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
77822553 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
77822594 ATGTAG
1 ATGTAG
77822600 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:77822539 original size:71 final size:71
Alignment explanation
Indices: 77822450--77822613 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
77822440 GAGATGTATC
*
77822450 CCATGTAGGCAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
77822515 AGGACA
66 AGGACA
77822521 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
77822586 AGGACA
66 AGGACA
77822592 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
77822614 AGACAAATCG
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 92 1.00
ACGTcount: A:0.35, C:0.18, G:0.29, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:77841364 original size:14 final size:14
Alignment explanation
Indices: 77841345--77841371 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
77841335 TAAATACTTG
77841345 ATTTGTTCTTAATT
1 ATTTGTTCTTAATT
77841359 ATTTGTTCTTAAT
1 ATTTGTTCTTAAT
77841372 GCTTGAGTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.07, G:0.07, T:0.63
Consensus pattern (14 bp):
ATTTGTTCTTAATT
Found at i:77847165 original size:6 final size:6
Alignment explanation
Indices: 77847127--77847208 Score: 62
Period size: 6 Copynumber: 13.8 Consensus size: 6
77847117 TGGATCCTCC
* *
77847127 TATTTT T-TTATT TATTTAT T-TATT TATTCT TATTTT TATTTT TA-TTT
1 TATTTT TATT-TT TATTT-T TATTTT TATTTT TATTTT TATTTT TATTTT
* * * * *
77847174 TACTTT TCTTTT TCTTTT GATTTT TATTTT CATTT
1 TATTTT TATTTT TATTTT TATTTT TATTTT TATTT
77847209 CAATTTTATT
Statistics
Matches: 61, Mismatches: 10, Indels: 10
0.75 0.12 0.12
Matches are distributed among these distances:
5 9 0.15
6 48 0.79
7 4 0.07
ACGTcount: A:0.16, C:0.06, G:0.01, T:0.77
Consensus pattern (6 bp):
TATTTT
Found at i:77847180 original size:12 final size:11
Alignment explanation
Indices: 77847127--77847228 Score: 55
Period size: 12 Copynumber: 8.5 Consensus size: 11
77847117 TGGATCCTCC
*
77847127 TATTTTTTTATT
1 TATTTTATT-TT
77847139 TA-TTTATTTATT
1 TATTTTA-TT-TT
77847151 TATTCTTATTTT
1 TATT-TTATTTT
77847163 TATTTT-TATTT
1 TATTTTAT-TTT
*
77847174 TACTTTTCTTTT
1 TA-TTTTATTTT
*
77847186 TCTTTTGATTTT
1 TATTTT-ATTTT
*
77847198 TATTTTCATTTC
1 TATTTT-ATTTT
*
77847210 AATTTTATTATTT
1 TATTTTA-T-TTT
77847223 TATTTT
1 TATTTT
77847229 GAAAGACATA
Statistics
Matches: 72, Mismatches: 9, Indels: 17
0.73 0.09 0.17
Matches are distributed among these distances:
10 1 0.01
11 15 0.21
12 42 0.58
13 11 0.15
14 3 0.04
ACGTcount: A:0.18, C:0.06, G:0.01, T:0.75
Consensus pattern (11 bp):
TATTTTATTTT
Found at i:77847215 original size:29 final size:29
Alignment explanation
Indices: 77847159--77847215 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
77847149 TTTATTCTTA
* * *
77847159 TTTTTATTTTTATTTTACTTTTCTTTTTC
1 TTTTGATTTTTATTTTACATTTCATTTTC
77847188 TTTTGATTTTTATTTT-CATTTCAATTTT
1 TTTTGATTTTTATTTTACATTTC-ATTTT
77847216 ATTATTTTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 5 0.21
29 19 0.79
ACGTcount: A:0.14, C:0.09, G:0.02, T:0.75
Consensus pattern (29 bp):
TTTTGATTTTTATTTTACATTTCATTTTC
Found at i:77853033 original size:40 final size:40
Alignment explanation
Indices: 77852977--77853052 Score: 143
Period size: 40 Copynumber: 1.9 Consensus size: 40
77852967 ATGATAACCC
77852977 GGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATATCCG
1 GGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATATCCG
*
77853017 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 GGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATA
77853053 ACCAAGCGAG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (40 bp):
GGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATATCCG
Found at i:77855026 original size:29 final size:29
Alignment explanation
Indices: 77854993--77855066 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
77854983 CCTTCGAGCT
77854993 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
77855022 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
77855051 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
77855067 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:77855027 original size:58 final size:58
Alignment explanation
Indices: 77854934--77855066 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
77854924 ATACTCGATT
* * * * *
77854934 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
* * * ** * *
77854992 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACACAGTGCCATACACTTCCAGC
*
77855050 ACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
77855067 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
Found at i:77862900 original size:29 final size:29
Alignment explanation
Indices: 77862867--77862940 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
77862857 CCTTCGAGCT
77862867 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
77862896 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
77862925 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
77862941 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:77862901 original size:58 final size:58
Alignment explanation
Indices: 77862808--77862940 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
77862798 ATACTCGATT
* * * * *
77862808 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
* * * ** * *
77862866 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACACAGTGCCATACACTTCCAGC
*
77862924 ACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
77862941 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
Found at i:77866053 original size:40 final size:44
Alignment explanation
Indices: 77865940--77866053 Score: 130
Period size: 46 Copynumber: 2.6 Consensus size: 44
77865930 ATCACGATTT
*
77865940 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGATATCGCACAATGC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGATA-CGCACAATGA
*
77865986 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-G-TA-GC-CACT-A
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGATACGCACAATGA
*
77866026 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
77866054 TTATAATTTC
Statistics
Matches: 63, Mismatches: 4, Indels: 8
0.84 0.05 0.11
Matches are distributed among these distances:
39 2 0.03
40 24 0.38
41 3 0.05
42 2 0.03
44 2 0.03
45 1 0.02
46 29 0.46
ACGTcount: A:0.22, C:0.30, G:0.25, T:0.23
Consensus pattern (44 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGATACGCACAATGA
Found at i:77874094 original size:80 final size:80
Alignment explanation
Indices: 77874010--77874158 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
77874000 TATGGTAACC
* * * *
77874010 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
77874074 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
77874090 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
77874155 CCGG
66 CCGG
77874159 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:77874100 original size:40 final size:38
Alignment explanation
Indices: 77874051--77874158 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
77874041 ATCACGATTT
*
77874051 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
77874091 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
77874131 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
77874159 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:77879083 original size:29 final size:29
Alignment explanation
Indices: 77879062--77879144 Score: 139
Period size: 29 Copynumber: 2.9 Consensus size: 29
77879052 GTGCTGTATT
** *
77879062 TTTCCAGCTTGCACACTTAGTGCCAAATA
1 TTTCCAGCACGCACACTTAGTGCCATATA
77879091 TTTCCAGCACGCACACTTAGTGCCATATA
1 TTTCCAGCACGCACACTTAGTGCCATATA
77879120 TTTCCAGCACGCACACTTAGTGCCA
1 TTTCCAGCACGCACACTTAGTGCCA
77879145 ATCTCGTCAC
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 51 1.00
ACGTcount: A:0.27, C:0.31, G:0.14, T:0.28
Consensus pattern (29 bp):
TTTCCAGCACGCACACTTAGTGCCATATA
Found at i:77880442 original size:14 final size:14
Alignment explanation
Indices: 77880423--77880457 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
77880413 AAGATGAGCA
* *
77880423 TTCTTTTTTTTTTT
1 TTCTTTTCTTTTTC
77880437 TTCTTTTCTTTTTC
1 TTCTTTTCTTTTTC
77880451 TTCTTTT
1 TTCTTTT
77880458 ACTAACATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (14 bp):
TTCTTTTCTTTTTC
Found at i:77884492 original size:55 final size:53
Alignment explanation
Indices: 77884383--77884638 Score: 231
Period size: 55 Copynumber: 4.8 Consensus size: 53
77884373 CATTAGGGTT
** *
77884383 CAAGGATACCATGTAAGACCATG-CTAAGGTATCGCAATTGGTAAGGTTTC-TAAGG
1 CAAGGATACCATGTAAGACCATGTC-AAGACATGGC-ATTGGTAA-G-TTCATAAGG
* * *
77884438 CAAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGG
1 CAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTT-C-ATAAGG
* * * * * *
77884493 CAAAGG-TCCCATGTAAGACCATGCCAAGGCATGACATTGGTGAGTTCATAAAG
1 C-AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCATAAGG
*
77884546 CAAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT--TCAA--
1 CAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCAT-AAGG
* * * *
77884596 -AAGGATACCACGTAAGACCATGACAAGTCATGGCAATGGTAAG
1 CAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAG
77884639 GTATCCGTGT
Statistics
Matches: 170, Mismatches: 24, Indels: 20
0.79 0.11 0.09
Matches are distributed among these distances:
49 40 0.24
51 1 0.01
52 8 0.05
53 42 0.25
54 8 0.05
55 66 0.39
56 5 0.03
ACGTcount: A:0.37, C:0.18, G:0.24, T:0.22
Consensus pattern (53 bp):
CAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCATAAGG
Found at i:77884590 original size:108 final size:110
Alignment explanation
Indices: 77884391--77884591 Score: 284
Period size: 108 Copynumber: 1.8 Consensus size: 110
77884381 TTCAAGGATA
* * * *
77884391 CCATGTAAGACCATGCTAAGGTATCGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATCGCAATTGGTAAGGTTTCTAAAGCAAGGAAACCATGTAAGA
*
77884456 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* *
77884501 CCATGTAAGACCATGCCAAGGCAT-G-ACATTGGTGA-G-TTCATAAAGCAAGGATACCATGTAA
1 CCATGTAAGACCATGCCAAGGCATCGCA-ATTGGTAAGGTTTC-TAAAGCAAGGAAACCATGTAA
*
77884562 GACCATGTCAAGACATGGCAATGGTAAGTT
64 GACCATGTCAAGACATGGCAATGATAAGTT
77884592 TCAAAAGGAT
Statistics
Matches: 81, Mismatches: 8, Indels: 6
0.85 0.08 0.06
Matches are distributed among these distances:
107 3 0.04
108 48 0.59
109 8 0.10
110 22 0.27
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATCGCAATTGGTAAGGTTTCTAAAGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:77884856 original size:16 final size:16
Alignment explanation
Indices: 77884835--77884865 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
77884825 ATAAATTTGA
77884835 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
77884851 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
77884866 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:77888924 original size:40 final size:40
Alignment explanation
Indices: 77888828--77889011 Score: 219
Period size: 40 Copynumber: 4.5 Consensus size: 40
77888818 TATTCGGATG
*
77888828 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGC---TAG-TGACT
*
77888871 ATACCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
* *
77888911 ATATCCGGGCTAAGTCCCAAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
* * * ** *
77888951 ATATCCGGGCTAAGACCCAAAGGCATTTGTGCGGGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
*
77888991 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
77889012 ATACTTGGGT
Statistics
Matches: 126, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
39 14 0.11
40 82 0.65
43 30 0.24
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
Found at i:77889625 original size:35 final size:34
Alignment explanation
Indices: 77889576--77889671 Score: 120
Period size: 35 Copynumber: 2.8 Consensus size: 34
77889566 CTCTCAACTA
* * * *
77889576 GGGCCTTAGTCCATTTCATTAACAGTAGCAATTT
1 GGGCCTAAGCCCATTTCAATAACAGTAGCAATAT
* * *
77889610 GGGGCCTGAGCCCATTTCAATAACAGTATCAGTAT
1 -GGGCCTAAGCCCATTTCAATAACAGTAGCAATAT
77889645 GGGCCTAAGCCCATTTCAATAACAGTA
1 GGGCCTAAGCCCATTTCAATAACAGTA
77889672 TCAGTACAGT
Statistics
Matches: 54, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
34 26 0.48
35 28 0.52
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (34 bp):
GGGCCTAAGCCCATTTCAATAACAGTAGCAATAT
Found at i:77889656 original size:34 final size:35
Alignment explanation
Indices: 77889576--77889677 Score: 134
Period size: 34 Copynumber: 2.9 Consensus size: 35
77889566 CTCTCAACTA
* * * * * *
77889576 GGGCCTTAGTCCATTTCATTAACAGTAGCAATTTG
1 GGGCCTAAGCCCATTTCAATAACAGTATCAGTATG
*
77889611 GGGCCTGAGCCCATTTCAATAACAGTATCAGTAT-
1 GGGCCTAAGCCCATTTCAATAACAGTATCAGTATG
77889645 GGGCCTAAGCCCATTTCAATAACAGTATCAGTA
1 GGGCCTAAGCCCATTTCAATAACAGTATCAGTA
77889678 CAGTATGCAA
Statistics
Matches: 60, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
34 32 0.53
35 28 0.47
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (35 bp):
GGGCCTAAGCCCATTTCAATAACAGTATCAGTATG
Found at i:77890110 original size:19 final size:19
Alignment explanation
Indices: 77890096--77890137 Score: 77
Period size: 19 Copynumber: 2.3 Consensus size: 19
77890086 TAACACGACC
77890096 CATGTAGACCCACACGCCT
1 CATGTAGACCCACACGCCT
77890115 CATGTAGACCCACACGCCT
1 CATGTAGACCCACACGCCT
77890134 -ATGT
1 CATGT
77890138 GGCCCAATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 4 0.17
19 19 0.83
ACGTcount: A:0.26, C:0.38, G:0.17, T:0.19
Consensus pattern (19 bp):
CATGTAGACCCACACGCCT
Found at i:77890862 original size:26 final size:26
Alignment explanation
Indices: 77890826--77890878 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
77890816 GATAAGAAGA
77890826 AAGAGAAAAAAGGTTTTGGCCGCTTC
1 AAGAGAAAAAAGGTTTTGGCCGCTTC
77890852 AAGAGAAAAAAGGTTTTGGCCGCTTC
1 AAGAGAAAAAAGGTTTTGGCCGCTTC
77890878 A
1 A
77890879 GTATCCACTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.36, C:0.15, G:0.26, T:0.23
Consensus pattern (26 bp):
AAGAGAAAAAAGGTTTTGGCCGCTTC
Found at i:77897504 original size:29 final size:28
Alignment explanation
Indices: 77897450--77897532 Score: 94
Period size: 29 Copynumber: 2.9 Consensus size: 28
77897440 TATATCTGGC
* * *
77897450 CCCATTAAGCCCAATTATATTCATATGG
1 CCCATTAGGCCCAATCACATTCATATGG
* *
77897478 CCCATTCGGCCCAAATCACATTTATATGG
1 CCCATTAGGCCC-AATCACATTCATATGG
* *
77897507 CCCGTTAGGCCCAGTCACATTCATAT
1 CCCATTAGGCCCAATCACATTCATAT
77897533 TCATGCTCAC
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
28 22 0.49
29 23 0.51
ACGTcount: A:0.28, C:0.30, G:0.13, T:0.29
Consensus pattern (28 bp):
CCCATTAGGCCCAATCACATTCATATGG
Found at i:77897767 original size:16 final size:16
Alignment explanation
Indices: 77897742--77897784 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
77897732 GTAGCCAAAC
* *
77897742 TTTCGACTTTTCGGCA
1 TTTCGGCTTTTCAGCA
*
77897758 TTTCGGCTTTTCAGTA
1 TTTCGGCTTTTCAGCA
77897774 TTTCGGCTTTT
1 TTTCGGCTTTT
77897785 GCCGATACAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.09, C:0.21, G:0.19, T:0.51
Consensus pattern (16 bp):
TTTCGGCTTTTCAGCA
Found at i:77901838 original size:28 final size:29
Alignment explanation
Indices: 77901777--77901889 Score: 110
Period size: 29 Copynumber: 4.0 Consensus size: 29
77901767 TTCACATAAT
* * *
77901777 TGTATCTGGCC-ATTAAGCCC-AATCATA
1 TGTATATGGCCTATTAGGCCCAAATCACA
*
77901804 T-TCATATGGCCTATT-GGCCCAAATCACC
1 TGT-ATATGGCCTATTAGGCCCAAATCACA
77901832 TGTATATGGCCTATTAGGCCCAAATCACA
1 TGTATATGGCCTATTAGGCCCAAATCACA
* ** *
77901861 TTTATATGGCCCGTTAGGCTC-AATCACA
1 TGTATATGGCCTATTAGGCCCAAATCACA
77901889 T
1 T
77901890 TCATATTCAT
Statistics
Matches: 72, Mismatches: 9, Indels: 9
0.80 0.10 0.10
Matches are distributed among these distances:
26 1 0.01
27 12 0.17
28 29 0.40
29 30 0.42
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.30
Consensus pattern (29 bp):
TGTATATGGCCTATTAGGCCCAAATCACA
Found at i:77901895 original size:28 final size:29
Alignment explanation
Indices: 77901783--77901895 Score: 119
Period size: 28 Copynumber: 4.0 Consensus size: 29
77901773 TAATTGTATC
* *
77901783 TGGCC-ATTAAGCCC-AATCATATTCATA
1 TGGCCTATTAGGCCCAAATCACATTCATA
*
77901810 TGGCCTATT-GGCCCAAATCACCTGT-ATA
1 TGGCCTATTAGGCCCAAATCACAT-TCATA
*
77901838 TGGCCTATTAGGCCCAAATCACATTTATA
1 TGGCCTATTAGGCCCAAATCACATTCATA
** *
77901867 TGGCCCGTTAGGCTC-AATCACATTCATA
1 TGGCCTATTAGGCCCAAATCACATTCATA
77901895 T
1 T
77901896 TCATGCTCAC
Statistics
Matches: 73, Mismatches: 8, Indels: 9
0.81 0.09 0.10
Matches are distributed among these distances:
27 9 0.12
28 35 0.48
29 29 0.40
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.30
Consensus pattern (29 bp):
TGGCCTATTAGGCCCAAATCACATTCATA
Found at i:77901975 original size:17 final size:18
Alignment explanation
Indices: 77901953--77901988 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
77901943 TTGCCTATTA
77901953 TGGGCCCA-ATAGCCCAT
1 TGGGCCCATATAGCCCAT
*
77901970 TGGGCCCATTTAGCCCAT
1 TGGGCCCATATAGCCCAT
77901988 T
1 T
77901989 CCGGCCTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.19, C:0.33, G:0.22, T:0.25
Consensus pattern (18 bp):
TGGGCCCATATAGCCCAT
Found at i:77902148 original size:16 final size:16
Alignment explanation
Indices: 77902106--77902141 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
77902096 GTAGCCAAAC
*
77902106 TTTCAAATTTTCGGCA
1 TTTCAGATTTTCGGCA
77902122 TTTCAGATTTTCGGCA
1 TTTCAGATTTTCGGCA
77902138 TTTC
1 TTTC
77902142 GGCTTTTGCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.47
Consensus pattern (16 bp):
TTTCAGATTTTCGGCA
Found at i:77906197 original size:28 final size:28
Alignment explanation
Indices: 77906154--77906268 Score: 124
Period size: 29 Copynumber: 4.0 Consensus size: 28
77906144 TACCTGTATC
* *
77906154 TGGCCCATTAAGCCCAATCATATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
* *
77906182 TGACCCATTAGGCCCAAATCACCTGT-ATA
1 TGGCCCATTAGGCCC-AATCACAT-TCATA
* * *
77906211 TGGCCCATTAGTCCTAGATCACATTTATA
1 TGGCCCATTAGGCCCA-ATCACATTCATA
*
77906240 TGGCCCGTTAGGCCCAATCACATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
77906268 T
1 T
77906269 TCATGCTCAC
Statistics
Matches: 71, Mismatches: 12, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
28 27 0.38
29 43 0.61
30 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.29
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCACATTCATA
Found at i:77906259 original size:57 final size:57
Alignment explanation
Indices: 77906145--77906260 Score: 146
Period size: 57 Copynumber: 2.0 Consensus size: 57
77906135 AATTTCACAT
* *
77906145 ACCTGTATCTGGCCCATTAAGCCCAATCATATTCATATGACCCATTAGGCCCAAATC
1 ACCTGTATATGGCCCATTAAGCCCAATCACATTCATATGACCCATTAGGCCCAAATC
* * * *
77906202 ACCTGTATATGGCCCATT-AGTCCTAGATCACATTTATATGGCCCGTTAGGCCC-AATC
1 ACCTGTATATGGCCCATTAAG-CCCA-ATCACATTCATATGACCCATTAGGCCCAAATC
77906259 AC
1 AC
77906261 ATTCATATTC
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
56 2 0.04
57 26 0.51
58 23 0.45
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.28
Consensus pattern (57 bp):
ACCTGTATATGGCCCATTAAGCCCAATCACATTCATATGACCCATTAGGCCCAAATC
Found at i:77906503 original size:16 final size:16
Alignment explanation
Indices: 77906479--77906513 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
77906469 GTAGCCAAAC
77906479 TTTCAACTTTTCGGCA
1 TTTCAACTTTTCGGCA
*
77906495 TTTCGACTTTTCGGCA
1 TTTCAACTTTTCGGCA
77906511 TTT
1 TTT
77906514 TAGCTTTTGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.14, C:0.23, G:0.14, T:0.49
Consensus pattern (16 bp):
TTTCAACTTTTCGGCA
Found at i:77907643 original size:16 final size:16
Alignment explanation
Indices: 77907618--77907648 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
77907608 AAAAATTCAA
77907618 GATTTCGGGATTTTTG
1 GATTTCGGGATTTTTG
*
77907634 GATTTTGGGATTTTT
1 GATTTCGGGATTTTT
77907649 AGGTTTCGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.13, C:0.03, G:0.29, T:0.55
Consensus pattern (16 bp):
GATTTCGGGATTTTTG
Found at i:77908757 original size:34 final size:34
Alignment explanation
Indices: 77908709--77908806 Score: 169
Period size: 34 Copynumber: 2.9 Consensus size: 34
77908699 CTCAATTAAA
* * *
77908709 GCCTTAGCCCATTTCATTAACAGTAGCAGTCTGG
1 GCCTGAGCCCATTTCAGTAACAGTAGCAGCCTGG
77908743 GCCTGAGCCCATTTCAGTAACAGTAGCAGCCTGG
1 GCCTGAGCCCATTTCAGTAACAGTAGCAGCCTGG
77908777 GCCTGAGCCCATTTCAGTAACAGTAGCAGC
1 GCCTGAGCCCATTTCAGTAACAGTAGCAGC
77908807 ATAATATGCA
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
34 61 1.00
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.23
Consensus pattern (34 bp):
GCCTGAGCCCATTTCAGTAACAGTAGCAGCCTGG
Found at i:77914985 original size:43 final size:43
Alignment explanation
Indices: 77914937--77915134 Score: 333
Period size: 43 Copynumber: 4.6 Consensus size: 43
77914927 CCGGCATTAC
*
77914937 GCCTGCTAAGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
77914980 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCATGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* * *
77915023 GCCTGCTAGGCACGAAAGCCTGAATACACATCACCGGCACTAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* *
77915066 ACCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACTAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
77915109 GCCTGCTAGGCACGAAGGCCCGAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
77915135 TAATACCAGC
Statistics
Matches: 145, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 145 1.00
ACGTcount: A:0.31, C:0.33, G:0.24, T:0.12
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
Found at i:77915425 original size:43 final size:42
Alignment explanation
Indices: 77915362--77915510 Score: 219
Period size: 43 Copynumber: 3.5 Consensus size: 42
77915352 ATCACATATC
* * *
77915362 CAATCACCGTCACGAAGCCTGCTAGGCATGAAGGCCCGAATA
1 CAATCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATA
77915404 CACATCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATA
1 CA-ATCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATA
77915447 CATATCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATA
1 CA-ATCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATA
* * *
77915490 TAAT-ACCAGCACTAGGCCTGC
1 CAATCACCGGCACTAAGCCTGC
77915511 GGGATTTATC
Statistics
Matches: 99, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
41 15 0.15
42 4 0.04
43 80 0.81
ACGTcount: A:0.30, C:0.33, G:0.23, T:0.14
Consensus pattern (42 bp):
CAATCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATA
Found at i:77915536 original size:38 final size:38
Alignment explanation
Indices: 77915482--77915565 Score: 123
Period size: 38 Copynumber: 2.2 Consensus size: 38
77915472 GGCACGAAGG
* *
77915482 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAT
1 CCCGAATATAATACCAGCACGAAGCCTGCGGGATTTAT
* *
77915520 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGAATATAATACCAGCACGAAGCCTGCGGGATTTAT
*
77915558 CCCAAATA
1 CCCGAATA
77915566 CACATCAAAT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.32, C:0.27, G:0.20, T:0.20
Consensus pattern (38 bp):
CCCGAATATAATACCAGCACGAAGCCTGCGGGATTTAT
Found at i:77915660 original size:355 final size:355
Alignment explanation
Indices: 77915009--77915718 Score: 1285
Period size: 355 Copynumber: 2.0 Consensus size: 355
77914999 CCGAATACAC
* *
77915009 ATCACCGGCATGAAGCCTGCTAGGCACGAAAGCCTGAATACACATCACCGGCACTAAACCTGCTA
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAAGCCCGAATACACATCACCGGCACTAAACCTGCTA
77915074 GGCACGAAGGCCCGAATACACATCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATATAAT
66 GGCACGAAGGCCCGAATACACATCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATATAAT
* *
77915139 ACCAGCACTAGGCCTGTGGGATCTATGCCGGATATAATACCAGCACGAAGCCTACGGGATTTAAC
131 ACCAGCACTAGGCCTGCGGGATCTATCCCGGATATAATACCAGCACGAAGCCTACGGGATTTAAC
*
77915204 CCCAATACACATCAAATATCATGCATATTTAATCATATACTAATACATCTCATTCAACATATCAC
196 CCAAATACACATCAAATATCATGCATATTTAATCATATACTAATACATCTCATTCAACATATCAC
*
77915269 ATTCGTAGTCATTTGCAACATTCGGGTATAAGCTCCATATGAACACCATTGTTTACATTTCGGTT
261 ATTCGTAGTCATTTGCAACATTCGGGTATAAGCTCCATATGAACACCATCGTTTACATTTCGGTT
*
77915334 CAAAATTCATTCATAAATATCACATATCCA
326 CAAAAGTCATTCATAAATATCACATATCCA
* * * *
77915364 ATCACCGTCACGAAGCCTGCTAGGCATGAAGGCCCGAATACACATCACCGGCACTAAGCCTGCTA
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAAGCCCGAATACACATCACCGGCACTAAACCTGCTA
*
77915429 GGCACGAAGGCCCGAATACATATCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATATAAT
66 GGCACGAAGGCCCGAATACACATCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATATAAT
* *
77915494 ACCAGCACTAGGCCTGCGGGATTTATCCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAAC
131 ACCAGCACTAGGCCTGCGGGATCTATCCCGGATATAATACCAGCACGAAGCCTACGGGATTTAAC
*
77915559 CCAAATACACATCAAATATCATGCATATTTAATCATATATTAATACATCTCATTCAACATATCAC
196 CCAAATACACATCAAATATCATGCATATTTAATCATATACTAATACATCTCATTCAACATATCAC
77915624 ATTCGTAGTCATTTGCAACATTCGGGTATAAGCTCCATATGAACACCATCGTTTACATTTCGGTT
261 ATTCGTAGTCATTTGCAACATTCGGGTATAAGCTCCATATGAACACCATCGTTTACATTTCGGTT
77915689 CAAAAGTCATTCATAAATATCACATATCCA
326 CAAAAGTCATTCATAAATATCACATATCCA
77915719 TTTCACCATT
Statistics
Matches: 340, Mismatches: 15, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
355 340 1.00
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.24
Consensus pattern (355 bp):
ATCACCGGCACGAAGCCTGCTAGGCACGAAAGCCCGAATACACATCACCGGCACTAAACCTGCTA
GGCACGAAGGCCCGAATACACATCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATATAAT
ACCAGCACTAGGCCTGCGGGATCTATCCCGGATATAATACCAGCACGAAGCCTACGGGATTTAAC
CCAAATACACATCAAATATCATGCATATTTAATCATATACTAATACATCTCATTCAACATATCAC
ATTCGTAGTCATTTGCAACATTCGGGTATAAGCTCCATATGAACACCATCGTTTACATTTCGGTT
CAAAAGTCATTCATAAATATCACATATCCA
Found at i:77920171 original size:43 final size:43
Alignment explanation
Indices: 77920114--77920303 Score: 231
Period size: 43 Copynumber: 4.4 Consensus size: 43
77920104 ATCGAGATGA
* * * *
77920114 GATTACATGCAAGACCATGTTTGGGACATTGGCATTA-TATTGT
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATTATTA-TAT
* *
77920157 GATTACGTGTAAGACCTTGTCTGGGACATTGGCATTGTTATAT
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATTATTATAT
*
77920200 GATTACGTGTAAGACCATGTCTGGGACATTGGCATTGTTATAT
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATTATTATAT
* * * *
77920243 GATTTCGTGTAAGTCCATGTCTGGGACATTGGCATCGA-TATGT
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCAT-TATTATAT
* *
77920286 GATAACATGTAAGACCAT
1 GATTACGTGTAAGACCAT
77920304 ATCTTGGCAT
Statistics
Matches: 129, Mismatches: 16, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
43 127 0.98
44 2 0.02
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.34
Consensus pattern (43 bp):
GATTACGTGTAAGACCATGTCTGGGACATTGGCATTATTATAT
Found at i:77920246 original size:86 final size:86
Alignment explanation
Indices: 77920114--77920303 Score: 256
Period size: 86 Copynumber: 2.2 Consensus size: 86
77920104 ATCGAGATGA
* * * *
77920114 GATTACATGCAAGACCATGTTTGGGACATTGGCATTATATTGTGATTACGTGTAAGACCTTGTCT
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATTATATTATGATTACGTGTAAGACCATGTCT
* *
77920179 GGGACATTGGCATTGTTATAT
66 GGGACATTGGCATCGATATAT
* * * *
77920200 GATTACGTGTAAGACCATGTCTGGGACATTGGCATTGT-TATATGATTTCGTGTAAGTCCATGTC
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATTATAT-TATGATTACGTGTAAGACCATGTC
*
77920264 TGGGACATTGGCATCGATATGT
65 TGGGACATTGGCATCGATATAT
*
77920286 GATAACATGTAAGACCAT
1 GATTACATGTAAGACCAT
77920304 ATCTTGGCAT
Statistics
Matches: 90, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
85 1 0.01
86 89 0.99
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.34
Consensus pattern (86 bp):
GATTACATGTAAGACCATGTCTGGGACATTGGCATTATATTATGATTACGTGTAAGACCATGTCT
GGGACATTGGCATCGATATAT
Found at i:77931216 original size:49 final size:47
Alignment explanation
Indices: 77931133--77931263 Score: 129
Period size: 49 Copynumber: 2.7 Consensus size: 47
77931123 GGGTTAAGAT
* *
77931133 GCCGATGCCAT-TTCCCAGACATGGTCTTCCACTAGCTTTCATATAGTGAG
1 GCCGATGCCATGTT-CCAGACA-GGTCTTACACTAGCTCTCATATA-T-AG
* * * *
77931183 GCCGATGCCATGTTCCAAACAGGTCTTATACTAGGTCTCATCTATAG
1 GCCGATGCCATGTTCCAGACAGGTCTTACACTAGCTCTCATATATAG
* *
77931230 GCGTCGATGCCATGTCCCAGATAGGTCTTACACT
1 GC--CGATGCCATGTTCCAGACAGGTCTTACACT
77931264 GACACACCAC
Statistics
Matches: 68, Mismatches: 10, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
47 4 0.06
48 1 0.01
49 44 0.65
50 17 0.25
51 2 0.03
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.29
Consensus pattern (47 bp):
GCCGATGCCATGTTCCAGACAGGTCTTACACTAGCTCTCATATATAG
Found at i:77931440 original size:46 final size:48
Alignment explanation
Indices: 77931284--77931449 Score: 176
Period size: 48 Copynumber: 3.5 Consensus size: 48
77931274 AAGCTGACGC
* * * * ** * *
77931284 CATGTCCTAGACAGGCCTTACACTAGCTTGTATATCACGAGGCTGATG
1 CATGTCCCAGACATGTCTTACACTGGCTTAAATAGCTCGAGGCTGATG
* * *
77931332 CATGTCCCAGACATGTCTTACATTGGCTTAAATATCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTTAAATAGCTCGAGGCTGATG
* * *
77931380 CATGTCCCAAACATGTCTTACACTGGCTCT-CAT-GCT-GTGGCTGATG
1 CATGTCCCAGACATGTCTTACACTGGCT-TAAATAGCTCGAGGCTGATG
77931426 CATGTCCCAGACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
77931450 AGCACACAAA
Statistics
Matches: 101, Mismatches: 16, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
46 31 0.31
47 2 0.02
48 67 0.66
49 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.29
Consensus pattern (48 bp):
CATGTCCCAGACATGTCTTACACTGGCTTAAATAGCTCGAGGCTGATG
Found at i:77936602 original size:48 final size:48
Alignment explanation
Indices: 77936452--77936676 Score: 178
Period size: 48 Copynumber: 4.8 Consensus size: 48
77936442 GGGTTATGTA
* * * *
77936452 CGATCCCATGTTAGACCATGTCTAGGACATGGCTTTGGCATCGATATG
1 CGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATACG
** ** * * *
77936500 TAATTTCGTGTAAGACCATAG-CTGGG-CTATCG-A-T---ATCGATATG
1 CGATCCCATGTAAGACCAT-GTCTGGGAC-ATGGCATTGGCATCGATACG
* * *
77936543 TGATCCCATGTAAGACCATGTCTGGGACATGGCATTGTCATCGA-CCG
1 CGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATACG
* *
77936590 ACGATCCCATGTAAGACCATGTCTAGGACATGGCATTGGCATCGATATG
1 -CGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATACG
* * * * *
77936639 TGATCCCATGTAAAACCATATCCGGGATATGGCATTGG
1 CGATCCCATGTAAGACCATGTCTGGGACATGGCATTGG
77936677 TATCCTACCA
Statistics
Matches: 139, Mismatches: 27, Indels: 22
0.74 0.14 0.12
Matches are distributed among these distances:
42 1 0.01
43 32 0.23
44 2 0.01
45 1 0.01
46 1 0.01
47 2 0.01
48 98 0.71
49 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (48 bp):
CGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATACG
Found at i:77940916 original size:55 final size:54
Alignment explanation
Indices: 77940829--77941083 Score: 269
Period size: 55 Copynumber: 4.8 Consensus size: 54
77940819 ATTAGGGTTT
*
77940829 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAA-GTTTCTAAGGC
* * * * *
77940884 AAGGAAATCATGTAAGACCATGTCAAGACATGGC-ATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTT--TCTAAGGC
* * *
77940939 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTC-TAAGGC
* *
77940992 AAGGATACCATGTAAGACCATGTCAAGACATGGCAA-TGGTAAGCTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
* * *
77941041 AAGGATACCACGTAAGACCATGACAAGTCATGGCAA-TGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAG
77941084 GTACCCGTGT
Statistics
Matches: 172, Mismatches: 21, Indels: 20
0.81 0.10 0.09
Matches are distributed among these distances:
49 40 0.23
52 7 0.04
53 41 0.24
54 12 0.07
55 68 0.40
56 4 0.02
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.21
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
Found at i:77947819 original size:40 final size:40
Alignment explanation
Indices: 77947746--77947839 Score: 102
Period size: 40 Copynumber: 2.4 Consensus size: 40
77947736 ATCTTGGTAT
77947746 CGCACACTTAGTGCCTCATATAGCCGAACCTA-TTCCAAC
1 CGCACACTTAGTGCCTCATATAGCCGAACCTATTTCCAAC
* * * * * *
77947785 TTGCACACTTAGTGCCAT-TTGTAGCTGAAGCTATTTCGAAC
1 -CGCACACTTAGTGCC-TCATATAGCCGAACCTATTTCCAAC
77947826 CGCACACTTAGTGC
1 CGCACACTTAGTGC
77947840 TGAACATAGT
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
40 38 0.84
41 7 0.16
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.28
Consensus pattern (40 bp):
CGCACACTTAGTGCCTCATATAGCCGAACCTATTTCCAAC
Found at i:77952322 original size:40 final size:40
Alignment explanation
Indices: 77952248--77952468 Score: 349
Period size: 40 Copynumber: 5.6 Consensus size: 40
77952238 AACCCAAGTA
* *
77952248 CCTTCGGGAGTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
*
77952287 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
77952327 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCATAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
77952367 CCTTCGGGACTTAGCCCAGATATAGTCACTAGCATAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
77952407 CCTTC-GGACTTAGCCCGGATATAGTCACTAGCACAAAGG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
77952446 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
77952469 CATCCGAATA
Statistics
Matches: 170, Mismatches: 9, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
39 48 0.28
40 121 0.71
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:77952454 original size:79 final size:80
Alignment explanation
Indices: 77952248--77952468 Score: 349
Period size: 79 Copynumber: 2.8 Consensus size: 80
77952238 AACCCAAGTA
* * *
77952248 CCTTCGGGAGTTAG-CCGGATATAG-CAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
77952311 GTCACTAGCACAAATG
65 GTCACTAGCACAAATG
* *
77952327 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCATAAATGCCTTCGGGACTTAGCCCAGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
*
77952392 TCACTAGCATAAATG
66 TCACTAGCACAAATG
*
77952407 CCTTC-GGACTTAGCCCGGATATAGTCACTAGCACAAAGGCCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
77952469 CATCCGAATA
Statistics
Matches: 131, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
79 67 0.51
80 63 0.48
81 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.24
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
TCACTAGCACAAATG
Found at i:77952459 original size:119 final size:119
Alignment explanation
Indices: 77952248--77952468 Score: 356
Period size: 119 Copynumber: 1.9 Consensus size: 119
77952238 AACCCAAGTA
* * * *
77952248 CCTTCGGGAGTTAGCCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
1 CCTTCGGGACTTAGCCAGATATAGCAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
*
77952313 CACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCATAAATG
66 CACTAGCACAAAGGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCATAAATG
*
77952367 CCTTCGGGACTTAGCCCAGATATAGTC-ACTAGCATAAATGCCTTC-GGACTTAGCCCGGATATA
1 CCTTCGGGACTTAG-CCAGATATAG-CAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
77952430 GTCACTAGCACAAAGGCCTTCGGGACTTAGCCCGGATAT
64 GTCACTAGCACAAAGGCCTTCGGGACTTAGCCCGGATAT
77952469 CATCCGAATA
Statistics
Matches: 94, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
119 68 0.72
120 25 0.27
121 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.24
Consensus pattern (119 bp):
CCTTCGGGACTTAGCCAGATATAGCAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
CACTAGCACAAAGGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCATAAATG
Found at i:77965186 original size:40 final size:39
Alignment explanation
Indices: 77965018--77965188 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
77965008 AGAAATTGAA
* *
77965018 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
77965058 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
77965098 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
77965138 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
77965178 TGATATCCGGG
1 TGATATCCGGG
77965189 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:77968381 original size:71 final size:71
Alignment explanation
Indices: 77968295--77968458 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
77968285 CGATTTGTCT
77968295 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
77968360 CTTTCA
66 CTTTCA
77968366 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
77968431 CTTTCA
66 CTTTCA
77968437 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
77968459 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:77968496 original size:71 final size:70
Alignment explanation
Indices: 77968295--77968492 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
77968285 CGATTTGTCT
* * * *
77968295 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
77968360 CTTTCA
65 CTTTCA
* * * *
77968366 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
77968431 CTTTCA
65 CTTTCA
* *
77968437 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
77968493 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:77970360 original size:23 final size:23
Alignment explanation
Indices: 77970302--77970354 Score: 97
Period size: 23 Copynumber: 2.3 Consensus size: 23
77970292 AGACACCTAA
*
77970302 AGATGTCTATGAATTTCTAGAGG
1 AGATGTCTATGAATTTATAGAGG
77970325 AGATGTCTATGAATTTATAGAGG
1 AGATGTCTATGAATTTATAGAGG
77970348 AGATGTC
1 AGATGTC
77970355 ACTGAACAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.32, C:0.08, G:0.26, T:0.34
Consensus pattern (23 bp):
AGATGTCTATGAATTTATAGAGG
Found at i:77982827 original size:23 final size:23
Alignment explanation
Indices: 77982800--77982844 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
77982790 ATCTCATACA
77982800 TATTTCACATTAGCCATTCGGCC
1 TATTTCACATTAGCCATTCGGCC
77982823 TATTTCACATTAGCCATTCGGC
1 TATTTCACATTAGCCATTCGGC
77982845 TTTACCACAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.22, C:0.29, G:0.13, T:0.36
Consensus pattern (23 bp):
TATTTCACATTAGCCATTCGGCC
Found at i:77982837 original size:71 final size:71
Alignment explanation
Indices: 77982752--77982892 Score: 255
Period size: 71 Copynumber: 2.0 Consensus size: 71
77982742 ATCTCCTACA
77982752 TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCAT
1 TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCAT
77982817 TCGGCC
66 TCGGCC
* * *
77982823 TATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACCTATTTCACATTATCCAT
1 TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCAT
77982888 TCGGC
66 TCGGC
77982893 TTTACCACAT
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
71 67 1.00
ACGTcount: A:0.28, C:0.29, G:0.08, T:0.35
Consensus pattern (71 bp):
TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCAT
TCGGCC
Found at i:77982873 original size:48 final size:48
Alignment explanation
Indices: 77982823--77983119 Score: 486
Period size: 48 Copynumber: 6.1 Consensus size: 48
77982813 CCATTCGGCC
*
77982823 TATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACC
1 TATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACA
* *
77982871 TATTTCACATTATCCATTCGGCTTTACCACATATATACATTTCTCATACA
1 TATTTCACATTAGCCATTCGGCTTTACCAC--ATATACATATCTCATACA
*
77982921 TATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATA
1 TATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACA
* *
77982969 TATTTCACAGTAGCCATTCGGCTTTACCACATATACATATCTCATACC
1 TATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACA
*
77983017 TATTTCACATTAGCCATTCGGCTTTACCACATATATACATTTCTCATACA
1 TATTTCACATTAGCCATTCGGCTTTACCAC--ATATACATATCTCATACA
*
77983067 TATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATA
1 TATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACA
77983115 TATTT
1 TATTT
77983120 ATCTTGTACA
Statistics
Matches: 231, Mismatches: 14, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
48 140 0.61
50 91 0.39
ACGTcount: A:0.30, C:0.26, G:0.06, T:0.38
Consensus pattern (48 bp):
TATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACA
Found at i:77982936 original size:98 final size:96
Alignment explanation
Indices: 77982823--77983119 Score: 486
Period size: 98 Copynumber: 3.1 Consensus size: 96
77982813 CCATTCGGCC
* *
77982823 TATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACCTATTTCACATTATCCAT
1 TATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCAT
*
77982888 TCGGCTTTACCACATATATACATTTCTCATACA
66 TCGGCTTTACCAC--ATATACATATCTCATACA
* *
77982921 TATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACAGTAGCCAT
1 TATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCAT
*
77982986 TCGGCTTTACCACATATACATATCTCATACC
66 TCGGCTTTACCACATATACATATCTCATACA
*
77983017 TATTTCACATTAGCCATTCGGCTTTACCACATATATACATTTCTCATACATATTTCACATTAGCC
1 TATTTCACATTAGCCATTCGGCTTTACCAC--ATATACATATCTCATACATATTTCACATTAGCC
*
77983082 ATTCGGCTTTACCACATATACATATCTCATATA
64 ATTCGGCTTTACCACATATACATATCTCATACA
77983115 TATTT
1 TATTT
77983120 ATCTTGTACA
Statistics
Matches: 186, Mismatches: 11, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
96 46 0.25
98 140 0.75
ACGTcount: A:0.30, C:0.26, G:0.06, T:0.38
Consensus pattern (96 bp):
TATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCAT
TCGGCTTTACCACATATACATATCTCATACA
Found at i:77983087 original size:146 final size:146
Alignment explanation
Indices: 77982823--77983119 Score: 576
Period size: 146 Copynumber: 2.0 Consensus size: 146
77982813 CCATTCGGCC
* *
77982823 TATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACCTATTTCACATTATCCAT
1 TATTTCACAGTAGCCATTCGGCTTTACCACATATACATATCTCATACCTATTTCACATTAGCCAT
77982888 TCGGCTTTACCACATATATACATTTCTCATACATATTTCACATTAGCCATTCGGCTTTACCACAT
66 TCGGCTTTACCACATATATACATTTCTCATACATATTTCACATTAGCCATTCGGCTTTACCACAT
77982953 ATACATATCTCATATA
131 ATACATATCTCATATA
77982969 TATTTCACAGTAGCCATTCGGCTTTACCACATATACATATCTCATACCTATTTCACATTAGCCAT
1 TATTTCACAGTAGCCATTCGGCTTTACCACATATACATATCTCATACCTATTTCACATTAGCCAT
77983034 TCGGCTTTACCACATATATACATTTCTCATACATATTTCACATTAGCCATTCGGCTTTACCACAT
66 TCGGCTTTACCACATATATACATTTCTCATACATATTTCACATTAGCCATTCGGCTTTACCACAT
77983099 ATACATATCTCATATA
131 ATACATATCTCATATA
77983115 TATTT
1 TATTT
77983120 ATCTTGTACA
Statistics
Matches: 149, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
146 149 1.00
ACGTcount: A:0.30, C:0.26, G:0.06, T:0.38
Consensus pattern (146 bp):
TATTTCACAGTAGCCATTCGGCTTTACCACATATACATATCTCATACCTATTTCACATTAGCCAT
TCGGCTTTACCACATATATACATTTCTCATACATATTTCACATTAGCCATTCGGCTTTACCACAT
ATACATATCTCATATA
Found at i:77984214 original size:2 final size:2
Alignment explanation
Indices: 77984207--77984245 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
77984197 TTAATCGTTA
77984207 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
77984246 CAGCATTAAC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:77991269 original size:27 final size:27
Alignment explanation
Indices: 77991221--77991284 Score: 80
Period size: 26 Copynumber: 2.4 Consensus size: 27
77991211 AAAAAAATAC
77991221 TATAAAAT-TTAAAAATGATAAA-TTGT
1 TATAAAATATTAAAAATGATAAACTT-T
**
77991247 TATAAAATATTAAAAATTCTAAACTTT
1 TATAAAATATTAAAAATGATAAACTTT
77991274 TA-AAAATATTA
1 TATAAAATATTA
77991285 TAACAAAATT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
26 17 0.50
27 15 0.44
28 2 0.06
ACGTcount: A:0.55, C:0.03, G:0.03, T:0.39
Consensus pattern (27 bp):
TATAAAATATTAAAAATGATAAACTTT
Found at i:77991778 original size:16 final size:18
Alignment explanation
Indices: 77991755--77991793 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
77991745 TTAAATTTTT
*
77991755 ATTTT-TATTTTTAATAC
1 ATTTTATATTTATAATAC
*
77991772 ATTTTATATTTATAATAT
1 ATTTTATATTTATAATAC
77991790 ATTT
1 ATTT
77991794 ATAAATGTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 5 0.26
18 14 0.74
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (18 bp):
ATTTTATATTTATAATAC
Found at i:77992934 original size:3 final size:3
Alignment explanation
Indices: 77992923--77992963 Score: 55
Period size: 3 Copynumber: 13.0 Consensus size: 3
77992913 GAAGGAACGT
*
77992923 GAA GGA GAA GAA GAA GAAA GAA GAA GAA GGAA GAA GAA GAA
1 GAA GAA GAA GAA GAA G-AA GAA GAA GAA -GAA GAA GAA GAA
77992964 AAAAAAGGTA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
3 28 0.82
4 6 0.18
ACGTcount: A:0.63, C:0.00, G:0.37, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:77992944 original size:13 final size:13
Alignment explanation
Indices: 77992928--77992963 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
77992918 AACGTGAAGG
77992928 AGAAGAAGAAGAA
1 AGAAGAAGAAGAA
*
77992941 AGAAGAAGAAGGA
1 AGAAGAAGAAGAA
77992954 AGAAGAAGAA
1 AGAAGAAGAA
77992964 AAAAAAGGTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (13 bp):
AGAAGAAGAAGAA
Found at i:77992961 original size:10 final size:10
Alignment explanation
Indices: 77992923--77992961 Score: 53
Period size: 10 Copynumber: 4.0 Consensus size: 10
77992913 GAAGGAACGT
*
77992923 GAAGGAGAA-
1 GAAGAAGAAG
*
77992932 GAAGAAGAAA
1 GAAGAAGAAG
77992942 GAAGAAGAAG
1 GAAGAAGAAG
77992952 GAAGAAGAAG
1 GAAGAAGAAG
77992962 AAAAAAAAGG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
9 8 0.30
10 19 0.70
ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00
Consensus pattern (10 bp):
GAAGAAGAAG
Found at i:77993569 original size:115 final size:115
Alignment explanation
Indices: 77993232--77993668 Score: 673
Period size: 112 Copynumber: 3.9 Consensus size: 115
77993222 AATTATAGTT
* *
77993232 GATTTGGTTATATAAATTGTTAGTGTTTAGTAGTTTAGTGTATTAGTGTATTGTG-A-TTTTTTA
1 GATTAGGTTATATAAATTGTTAGTGTTTAGTGGTTTAGTGTATTAGTGTATTGTGAATTTTTTTA
77993295 GTAATATATTTTAAAAAAAATAATTTTATAGCTATTTTATTAGTAATTTAA
66 GTAATATATTTT-AAAAAAATAATTTTATAGCTATTTTATTAGTAATTTAA
* *
77993346 TATTAGGTTATATAAATTGTTAGTGTTTAGTGGTTTA--GTATTAGCGTATTGT-AATTTTTTTA
1 GATTAGGTTATATAAATTGTTAGTGTTTAGTGGTTTAGTGTATTAGTGTATTGTGAATTTTTTTA
*
77993408 GTAATATATTTTAAAAAAATATTTTTATAGCTATTTTATTAGTAATTTAA
66 GTAATATATTTTAAAAAAATAATTTTATAGCTATTTTATTAGTAATTTAA
*
77993458 GATTAGGTTATATAAATTATTAGTGTTTAGTGGTTTAGTGTATTAGTGTATTGTGAATTTTTTTA
1 GATTAGGTTATATAAATTGTTAGTGTTTAGTGGTTTAGTGTATTAGTGTATTGTGAATTTTTTTA
*
77993523 GTAATATATTTTAAAAAAATATTTTTATAGCTATTTTATTAGTAATTTAA
66 GTAATATATTTTAAAAAAATAATTTTATAGCTATTTTATTAGTAATTTAA
* *
77993573 GATTAGGTTATAT--ATTGTTAGTGTTTAGT-G--T-GTGTATTAATGTATTGTGATTTTTTTTT
1 GATTAGGTTATATAAATTGTTAGTGTTTAGTGGTTTAGTGTATTAGTGTATTGTGA-ATTTTTTT
* *
77993632 AGTAATGTA-TTTAAAAAAATAATTTTATAGTTATTTT
65 AGTAATATATTTTAAAAAAATAATTTTATAGCTATTTT
77993669 GTGTTAGTAT
Statistics
Matches: 303, Mismatches: 14, Indels: 17
0.91 0.04 0.05
Matches are distributed among these distances:
109 44 0.15
110 16 0.05
112 88 0.29
113 34 0.11
114 48 0.16
115 73 0.24
ACGTcount: A:0.32, C:0.01, G:0.15, T:0.52
Consensus pattern (115 bp):
GATTAGGTTATATAAATTGTTAGTGTTTAGTGGTTTAGTGTATTAGTGTATTGTGAATTTTTTTA
GTAATATATTTTAAAAAAATAATTTTATAGCTATTTTATTAGTAATTTAA
Found at i:77993756 original size:15 final size:16
Alignment explanation
Indices: 77993727--77993758 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
77993717 TTGTGATTTT
77993727 TAATGTAATTTTTATA
1 TAATGTAATTTTTATA
77993743 TAATGTAA-TTTTATA
1 TAATGTAATTTTTATA
77993758 T
1 T
77993759 TATTATATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (16 bp):
TAATGTAATTTTTATA
Found at i:77995639 original size:14 final size:14
Alignment explanation
Indices: 77995620--77995649 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
77995610 TTGTTGCTAA
77995620 GTTAGGAAACTTGG
1 GTTAGGAAACTTGG
77995634 GTTAGGAAACTTGG
1 GTTAGGAAACTTGG
77995648 GT
1 GT
77995650 ATGGTTCTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.27, C:0.07, G:0.37, T:0.30
Consensus pattern (14 bp):
GTTAGGAAACTTGG
Found at i:78010753 original size:13 final size:14
Alignment explanation
Indices: 78010734--78010772 Score: 55
Period size: 13 Copynumber: 2.9 Consensus size: 14
78010724 CTACCCAATA
78010734 AAAGAAGAAGAGAG
1 AAAGAAGAAGAGAG
78010748 -AAGAAGAAGA-AG
1 AAAGAAGAAGAGAG
*
78010760 AAAAAAGAAGAGA
1 AAAGAAGAAGAGA
78010773 ATTTGTGTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
12 2 0.09
13 19 0.86
14 1 0.05
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (14 bp):
AAAGAAGAAGAGAG
Found at i:78010756 original size:16 final size:16
Alignment explanation
Indices: 78010735--78010770 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
78010725 TACCCAATAA
* *
78010735 AAGAAGAAGAGAGAAG
1 AAGAAGAAGAAAAAAG
78010751 AAGAAGAAGAAAAAAG
1 AAGAAGAAGAAAAAAG
78010767 AAGA
1 AAGA
78010771 GAATTTGTGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (16 bp):
AAGAAGAAGAAAAAAG
Found at i:78013597 original size:40 final size:39
Alignment explanation
Indices: 78013540--78013724 Score: 167
Period size: 40 Copynumber: 4.6 Consensus size: 39
78013530 TTGAATGATG
* *
78013540 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-AAGTTACTAAA
* * * * *
78013580 TCCGGACTAAGATCCGAAGGCGTTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCAAGTTACTAAA
*
78013620 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCAAGTTACTAAA
* * * * *
78013659 CCCAGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCAAGTTACTA-AA
**
78013700 -CCGGGCTTTGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
78013725 AGTGAGTCGT
Statistics
Matches: 118, Mismatches: 23, Indels: 8
0.79 0.15 0.05
Matches are distributed among these distances:
39 31 0.26
40 78 0.66
41 9 0.08
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCAAGTTACTAAA
Found at i:78013685 original size:79 final size:82
Alignment explanation
Indices: 78013540--78013724 Score: 231
Period size: 79 Copynumber: 2.3 Consensus size: 82
78013530 TTGAATGATG
* * *
78013540 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCGTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
78013604 CGTGCGAGTTAATA-AA
66 CGTGCGAGTTAATATAA
* *
78013620 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCAGG-TTAAG-TCCCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCC-GGACTAAGAT-CCGAAGGCA
*
78013681 TTCGTGCGAGTTACTATAA
64 TTCGTGCGAGTTAATATAA
**
78013700 -CCGGGCTTTGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
78013725 AGTGAGTCGT
Statistics
Matches: 92, Mismatches: 8, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
78 1 0.01
79 55 0.60
80 36 0.39
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTAATATAA
Done.