Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 249 of 318
Found at i:78314409 original size:46 final size:46
Alignment explanation
Indices: 78314237--78314409 Score: 194
Period size: 46 Copynumber: 3.7 Consensus size: 46
78314227 AACCCGCCCC
* * *
78314237 TAAGTGAACTCAGACTCAACTCAACGAGCTT-GGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAG-TTCGGACATTCGCATCCA
* *
78314283 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
78314331 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
78314376 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
78314410 TGCTCAACCA
Statistics
Matches: 106, Mismatches: 11, Indels: 20
0.77 0.08 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 4 0.04
46 58 0.55
47 29 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:78321648 original size:43 final size:44
Alignment explanation
Indices: 78321600--78321755 Score: 144
Period size: 43 Copynumber: 3.6 Consensus size: 44
78321590 TATGATTACA
*
78321600 TGTAAGACCATGTCTGGGACATTGGCATTG-TATTGATATTATG
1 TGTAAGACCATGTCTGGGACATTGGCATCGATATTGATATTATG
* * * * *
78321643 TGTAAGACCATGTTTGAGACATTAGCATCGTTAATCGAT-TT-TG
1 TGTAAGACCATGTCTGGGACATTGGCATCGAT-ATTGATATTATG
* * **
78321686 TGTAAGACCCTGTCTGGGACAGTGGCATCGATATGTGATA--ACA
1 TGTAAGACCATGTCTGGGACATTGGCATCGATAT-TGATATTATG
* *
78321729 TGTAAGACCATATCTGGGATA-TGGCAT
1 TGTAAGACCATGTCTGGGACATTGGCAT
78321756 TGTACAAGCT
Statistics
Matches: 91, Mismatches: 17, Indels: 11
0.76 0.14 0.09
Matches are distributed among these distances:
42 8 0.09
43 75 0.82
44 3 0.03
45 5 0.05
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.33
Consensus pattern (44 bp):
TGTAAGACCATGTCTGGGACATTGGCATCGATATTGATATTATG
Found at i:78322008 original size:12 final size:12
Alignment explanation
Indices: 78321991--78322017 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
78321981 TTGAATTGAA
78321991 ATGCAAATGTTC
1 ATGCAAATGTTC
78322003 ATGCAAATGTTC
1 ATGCAAATGTTC
78322015 ATG
1 ATG
78322018 TAATAATCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.33, C:0.15, G:0.19, T:0.33
Consensus pattern (12 bp):
ATGCAAATGTTC
Found at i:78323805 original size:36 final size:36
Alignment explanation
Indices: 78323758--78323830 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
78323748 CTCAAGATAA
78323758 TACAATCATAATTGCACATAGTTCCACTATTTACTC
1 TACAATCATAATTGCACATAGTTCCACTATTTACTC
78323794 TACAATCATAATTGCACATAGTTCCACTATTTACTC
1 TACAATCATAATTGCACATAGTTCCACTATTTACTC
78323830 T
1 T
78323831 TGTTCATCTC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (36 bp):
TACAATCATAATTGCACATAGTTCCACTATTTACTC
Found at i:78325714 original size:23 final size:23
Alignment explanation
Indices: 78325688--78325734 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 23
78325678 CCATGCAATC
78325688 CAACATA-ATATTATACATGG-ATG
1 CAACATACATA-TA-ACATGGCATG
78325711 CAACATACATATAACATGGCATG
1 CAACATACATATAACATGGCATG
78325734 C
1 C
78325735 TCAAATACAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 6 0.27
23 13 0.59
24 3 0.14
ACGTcount: A:0.43, C:0.19, G:0.13, T:0.26
Consensus pattern (23 bp):
CAACATACATATAACATGGCATG
Found at i:78325863 original size:28 final size:27
Alignment explanation
Indices: 78325769--78325886 Score: 141
Period size: 27 Copynumber: 4.3 Consensus size: 27
78325759 GAACAAATCT
* * *
78325769 GTCATTTTACCTTACTG-GGGTATTACA
1 GTCATTTTACCCTA-TGAGGGTATTTCG
*
78325796 GTCATTTTACCCTA-CAGGGGTATTTCG
1 GTCATTTTACCCTATGA-GGGTATTTCG
* *
78325823 GTTATTTTACCCTATGAGGGTATTTCC
1 GTCATTTTACCCTATGAGGGTATTTCG
78325850 GTCATTTTGACCCTATGAGGGTATTTCG
1 GTCATTTT-ACCCTATGAGGGTATTTCG
78325878 GTCATTTTA
1 GTCATTTTA
78325887 TCACATAAGG
Statistics
Matches: 78, Mismatches: 9, Indels: 8
0.82 0.09 0.08
Matches are distributed among these distances:
27 51 0.65
28 27 0.35
ACGTcount: A:0.19, C:0.19, G:0.20, T:0.42
Consensus pattern (27 bp):
GTCATTTTACCCTATGAGGGTATTTCG
Found at i:78325905 original size:21 final size:21
Alignment explanation
Indices: 78325879--78325920 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
78325869 GGTATTTCGG
78325879 TCATTTTATCACATAAGGGCA
1 TCATTTTATCACATAAGGGCA
*
78325900 TCATTTTATCACATAATGGCA
1 TCATTTTATCACATAAGGGCA
78325921 AAATCGTCAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.36
Consensus pattern (21 bp):
TCATTTTATCACATAAGGGCA
Found at i:78326054 original size:27 final size:27
Alignment explanation
Indices: 78325878--78326053 Score: 238
Period size: 27 Copynumber: 6.7 Consensus size: 27
78325868 GGGTATTTCG
78325878 GTCATTTTATCACATAAGGGC---A--
1 GTCATTTTATCACATAAGGGCAAAATC
*
78325900 -TCATTTTATCACATAATGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
*
78325926 GTCATTTTAACACATAAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
* *
78325953 TTCATTTTATCACATAAAGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
78325980 GTCATTTTATCACATAAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
* * *
78326007 GTTATTTTATCATATAAGGGTAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
*
78326034 GTCATTTTATCACATGAGGG
1 GTCATTTTATCACATAAGGG
78326054 TTTAGGTACG
Statistics
Matches: 134, Mismatches: 14, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
21 19 0.14
24 1 0.01
27 114 0.85
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.33
Consensus pattern (27 bp):
GTCATTTTATCACATAAGGGCAAAATC
Found at i:78330549 original size:46 final size:46
Alignment explanation
Indices: 78330496--78330671 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
78330486 TATTTGGGCA
78330496 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
78330542 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
78330589 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
78330635 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
78330672 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:78330651 original size:93 final size:93
Alignment explanation
Indices: 78330492--78330663 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
78330482 GGGATATTTG
* *
78330492 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
78330557 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
78330585 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
78330650 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
78330664 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:78333642 original size:15 final size:15
Alignment explanation
Indices: 78333622--78333690 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
78333612 GTATCTTGGG
78333622 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
78333637 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
78333652 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
78333667 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
78333682 TTTCTTTAT
1 TTTCTTTAT
78333691 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:78333691 original size:30 final size:30
Alignment explanation
Indices: 78333613--78333700 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
78333603 CATAGTATCG
* * * *
78333613 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
78333643 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
78333673 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
78333701 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:78336139 original size:46 final size:46
Alignment explanation
Indices: 78336086--78336261 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
78336076 TATTTGGGCA
78336086 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
78336132 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
78336179 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
78336225 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
78336262 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:78336241 original size:93 final size:93
Alignment explanation
Indices: 78336082--78336253 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
78336072 GGGATATTTG
* *
78336082 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
78336147 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
78336175 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
78336240 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
78336254 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:78346068 original size:93 final size:93
Alignment explanation
Indices: 78345909--78346080 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
78345899 AGGATATTTG
* *
78345909 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAATGTCCGAGCTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCAAATGCCCGAGCTCGTTGAG
78345974 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
78346002 GGCATCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCCGAGCTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCAAATGCCCGAGCTCGTTGAG
*
78346067 TTGAGTTCGAGTTC
66 TTGAGTCCGAGTTC
78346081 ACTTATGGTC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (93 bp):
GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCAAATGCCCGAGCTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:78346087 original size:46 final size:46
Alignment explanation
Indices: 78345914--78346088 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 46
78345904 ATTTGGGCAT
* * *
78345914 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAATGT
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGC
* * * *
78345960 CCGAGCTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGC
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATGC
*
78346005 ATCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGC
1 --CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGC
*
78346053 CCGAGCTCGTTGAGTTGAGTTCGAGTTCACTTATGG
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
78346089 TCGGGTTACA
Statistics
Matches: 109, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 5 0.05
45 4 0.04
46 62 0.57
47 27 0.25
48 5 0.05
50 6 0.06
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.30
Consensus pattern (46 bp):
CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGC
Found at i:78348222 original size:30 final size:29
Alignment explanation
Indices: 78348169--78348225 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 29
78348159 GCCCTATTTT
* * *
78348169 CACACGGCTTGTGACATGGGCGTGTGAGG
1 CACACGGCCTGTCACACGGGCGTGTGAGG
78348198 CACACGGCCTGTTCACACGGGCGTGTGA
1 CACACGGCCTG-TCACACGGGCGTGTGA
78348226 CCTTTAAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 10 0.42
30 14 0.58
ACGTcount: A:0.18, C:0.26, G:0.37, T:0.19
Consensus pattern (29 bp):
CACACGGCCTGTCACACGGGCGTGTGAGG
Found at i:78351867 original size:39 final size:39
Alignment explanation
Indices: 78351823--78351950 Score: 184
Period size: 39 Copynumber: 3.3 Consensus size: 39
78351813 TATGAGATTG
78351823 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
* * *
78351862 AAAATATCCGGACATGAGATCTGCAGGCTATATGCTAGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
* * * **
78351901 AATATATCCGGACTTGAGGTCCGTAGGCTACGTGCTGGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
78351940 AAAATATCCGG
1 AAAATATCCGG
78351951 GTTAAAGACC
Statistics
Matches: 77, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 77 1.00
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.23
Consensus pattern (39 bp):
AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
Found at i:78352164 original size:2 final size:2
Alignment explanation
Indices: 78352157--78352188 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
78352147 TCAAGGCACG
78352157 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
78352189 GTGTGTGTGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:78356542 original size:36 final size:37
Alignment explanation
Indices: 78356462--78356568 Score: 155
Period size: 36 Copynumber: 2.9 Consensus size: 37
78356452 TAAAAAAACG
* *
78356462 TGGTGCTAAGTGGATATACCACGGTTATACGTGTAACA
1 TGGTGCTAAGTGGATATACCACGGTTACACG-ATAACA
*
78356500 TGGTGCTAAGTGGATATACCACGATTACAC-ATAACA
1 TGGTGCTAAGTGGATATACCACGGTTACACGATAACA
*
78356536 TGGTGCTAAGTGGATATGCCACGGTTACA-GATA
1 TGGTGCTAAGTGGATATACCACGGTTACACGATA
78356569 TTGATTCATT
Statistics
Matches: 63, Mismatches: 5, Indels: 4
0.88 0.07 0.06
Matches are distributed among these distances:
36 35 0.56
38 28 0.44
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (37 bp):
TGGTGCTAAGTGGATATACCACGGTTACACGATAACA
Found at i:78359563 original size:18 final size:18
Alignment explanation
Indices: 78359536--78359570 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
78359526 TTTTAGTTTT
78359536 ATTTTAATTATTATTGTC
1 ATTTTAATTATTATTGTC
* *
78359554 ATTTTTATTATTTTTGT
1 ATTTTAATTATTATTGT
78359571 TGTTACATTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.23, C:0.03, G:0.06, T:0.69
Consensus pattern (18 bp):
ATTTTAATTATTATTGTC
Found at i:78359685 original size:3 final size:3
Alignment explanation
Indices: 78359677--78359702 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
78359667 TTCATATTAA
78359677 ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT AT
78359703 CATCATTCGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:78361263 original size:6 final size:6
Alignment explanation
Indices: 78361264--78361292 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
78361254 TTTTTATTTT
78361264 TTTATG TTTATG TTTATG TTTATG TTTAT
1 TTTATG TTTATG TTTATG TTTATG TTTAT
78361293 TTTTTTGTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.17, C:0.00, G:0.14, T:0.69
Consensus pattern (6 bp):
TTTATG
Found at i:78361297 original size:33 final size:32
Alignment explanation
Indices: 78361250--78361319 Score: 81
Period size: 33 Copynumber: 2.2 Consensus size: 32
78361240 TCTCTTCACT
*
78361250 TTTATTTTTATTTTTT-TATGTTTATG-TTTATG
1 TTTATGTTTATTTTTTGT-TGTTT-TGCTTTATG
*
78361282 TTTATGTTTATTTTTTTGTTGTTTTGCTTTATT
1 TTTATGTTTA-TTTTTTGTTGTTTTGCTTTATG
78361315 TTTAT
1 TTTAT
78361320 TTTCTTGTAC
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
32 11 0.33
33 21 0.64
34 1 0.03
ACGTcount: A:0.13, C:0.01, G:0.10, T:0.76
Consensus pattern (32 bp):
TTTATGTTTATTTTTTGTTGTTTTGCTTTATG
Found at i:78361312 original size:27 final size:27
Alignment explanation
Indices: 78361274--78361327 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
78361264 TTTATGTTTA
*
78361274 TGTTTATGTTTATGTTTATTTTTTTGT
1 TGTTTATGTTTATGTTTATTTTCTTGT
*
78361301 TGTTT-TGCTTTATTTTTATTTTCTTGT
1 TGTTTATG-TTTATGTTTATTTTCTTGT
78361328 ACTTCTTTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 2 0.08
27 22 0.92
ACGTcount: A:0.09, C:0.04, G:0.13, T:0.74
Consensus pattern (27 bp):
TGTTTATGTTTATGTTTATTTTCTTGT
Found at i:78377093 original size:40 final size:40
Alignment explanation
Indices: 78377048--78377177 Score: 156
Period size: 40 Copynumber: 3.2 Consensus size: 40
78377038 CGGAATGCAA
*
78377048 CCGGATATAACCA-TGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-AGCACGAATGCCTTCGGGTCTTAGC
* ** *
78377088 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
78377128 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
78377168 CCGGATATAA
1 CCGGATATAA
78377178 TTTCCAGCAT
Statistics
Matches: 75, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
39 2 0.03
40 72 0.96
41 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:78377192 original size:40 final size:40
Alignment explanation
Indices: 78377071--78377215 Score: 150
Period size: 40 Copynumber: 3.6 Consensus size: 40
78377061 TGTGCACGAA
* *
78377071 TGCCTTCGGGTCTTAGCCCGGATAGAATGACTC-GCACGAA-
1 TGCCTTCGGGTCTTAGCCCGGATATAATCAC-CAGCAC-AAT
* ** *
78377111 TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAAT
1 TGCCTTCGGGTCTTAGCCCGGATATAATCACCAGCACAAT
* ** *
78377151 TGCCTTCGGGTCTTAACCCGGATATAATTTCCAGCATAAT
1 TGCCTTCGGGTCTTAGCCCGGATATAATCACCAGCACAAT
* *
78377191 TGTCTTCGGGGCTTAGCCCGGATAT
1 TGCCTTCGGGTCTTAGCCCGGATAT
78377216 CATTCAATTT
Statistics
Matches: 86, Mismatches: 17, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
39 2 0.02
40 84 0.98
ACGTcount: A:0.21, C:0.27, G:0.25, T:0.28
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATAATCACCAGCACAAT
Found at i:78390188 original size:46 final size:46
Alignment explanation
Indices: 78390138--78390309 Score: 213
Period size: 46 Copynumber: 3.7 Consensus size: 46
78390128 TGGTTGAGCA
*
78390138 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * ** *
78390184 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT-TATGGATGC-AAACG
*
78390230 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
78390276 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
78390310 GGGGCGGGTT
Statistics
Matches: 104, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
45 2 0.02
46 100 0.96
47 2 0.02
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:78390292 original size:92 final size:92
Alignment explanation
Indices: 78390135--78390304 Score: 304
Period size: 92 Copynumber: 1.8 Consensus size: 92
78390125 GGATGGTTGA
* *
78390135 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
78390200 TGAGTCCGAGTTCGTGAATGTAACTAG
66 TGAGTCCGAGTTCGTGAATGTAACTAG
* *
78390227 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
78390292 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
78390305 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
92 74 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAATGTAACTAG
Found at i:78401761 original size:24 final size:21
Alignment explanation
Indices: 78401726--78401768 Score: 50
Period size: 24 Copynumber: 1.9 Consensus size: 21
78401716 ATTGAAATGT
78401726 GGTTTGTGATTGTGTATATGATC
1 GGTTTGTGATTG-GT-TATGATC
*
78401749 GGTTATGTTATTGGTTATGA
1 GGTT-TGTGATTGGTTATGA
78401769 ATGCTTTTGG
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
22 5 0.28
23 6 0.33
24 7 0.39
ACGTcount: A:0.19, C:0.02, G:0.30, T:0.49
Consensus pattern (21 bp):
GGTTTGTGATTGGTTATGATC
Found at i:78402729 original size:22 final size:21
Alignment explanation
Indices: 78402704--78402763 Score: 59
Period size: 22 Copynumber: 2.7 Consensus size: 21
78402694 AAAAGCAAAT
*
78402704 AAATGAAA-AAAATAGAATGTAA
1 AAATAAAATAAAATAG-AT-TAA
*
78402726 AAATTAAACTAGAAATAGATTAA
1 AAA-TAAAATA-AAATAGATTAA
78402749 AAATAAAATAAAATA
1 AAATAAAATAAAATA
78402764 AAAAATGGCT
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
21 5 0.16
22 9 0.28
23 9 0.28
24 3 0.09
25 6 0.19
ACGTcount: A:0.68, C:0.02, G:0.08, T:0.22
Consensus pattern (21 bp):
AAATAAAATAAAATAGATTAA
Found at i:78421826 original size:29 final size:29
Alignment explanation
Indices: 78421793--78421924 Score: 192
Period size: 29 Copynumber: 4.6 Consensus size: 29
78421783 GTGACGAGAT
78421793 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
78421822 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
78421851 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
78421880 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
78421909 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
78421925 AGTTCGGAAG
Statistics
Matches: 92, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 92 1.00
ACGTcount: A:0.27, C:0.15, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:78421940 original size:87 final size:87
Alignment explanation
Indices: 78421792--78421981 Score: 197
Period size: 87 Copynumber: 2.2 Consensus size: 87
78421782 GGTGACGAGA
** * * *
78421792 TTGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAATATATGGCAC
1 TTGGCACTAAGTGTGCAAGCTGGAAAAATACGGCACTAAGTGTGCATGCTGGAAAGATATGGCAC
* *
78421857 TAAGTGTGCGTGCTGGAAA-TAT
66 TAAGTGTGCGAGCT-GAAATTAC
** * *
78421879 TTGGCACTAAGTGTGCAAGCTGGAAAAATACGGCACTGGGTGTGCGA-GTTCGG-AAGGTATGGC
1 TTGGCACTAAGTGTGCAAGCTGGAAAAATACGGCACTAAGTGTGC-ATGCT-GGAAAGATATGGC
** *
78421942 ACTGTGTGTGCGAGCTTAAATTAC
64 ACTAAGTGTGCGAGCTGAAATTAC
*
78421966 GTGGCACTAAGTGTGC
1 TTGGCACTAAGTGTGC
78421982 GAAATCGAGT
Statistics
Matches: 85, Mismatches: 15, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
86 3 0.04
87 79 0.93
88 3 0.04
ACGTcount: A:0.26, C:0.15, G:0.32, T:0.27
Consensus pattern (87 bp):
TTGGCACTAAGTGTGCAAGCTGGAAAAATACGGCACTAAGTGTGCATGCTGGAAAGATATGGCAC
TAAGTGTGCGAGCTGAAATTAC
Found at i:78421942 original size:58 final size:56
Alignment explanation
Indices: 78421794--78421983 Score: 168
Period size: 58 Copynumber: 3.3 Consensus size: 56
78421784 TGACGAGATT
* * * *
78421794 GGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAATATAT
1 GGCACTAAGTGTGCGAGCTGG-AA-ATATGGCACTAAGTGTGCAAGCTGGAAAAATAC
*
78421852 GGCACTAAGTGTGCGTGCTGGAAATATTTGGCACTAAGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGAGCTGGAAATA--TGGCACTAAGTGTGCAAGCTGGAAAAATAC
** * * ** * * *
78421910 GGCACTGGGTGTGCGAGTTCGGAAGGTATGGCACTGTGTGTGCGAGCT--TAAATTAC
1 GGCACTAAGTGTGCGAGCT-GGAA-ATATGGCACTAAGTGTGCAAGCTGGAAAAATAC
78421966 GTGGCACTAAGTGTGCGA
1 --GGCACTAAGTGTGCGA
78421984 AATCGAGTAG
Statistics
Matches: 111, Mismatches: 15, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
56 9 0.08
57 2 0.02
58 94 0.85
59 4 0.04
60 2 0.02
ACGTcount: A:0.26, C:0.15, G:0.33, T:0.26
Consensus pattern (56 bp):
GGCACTAAGTGTGCGAGCTGGAAATATGGCACTAAGTGTGCAAGCTGGAAAAATAC
Found at i:78422883 original size:17 final size:18
Alignment explanation
Indices: 78422841--78422889 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
78422831 AGTTGAAAAG
78422841 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
78422860 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
78422877 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
78422890 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:78423778 original size:40 final size:40
Alignment explanation
Indices: 78423712--78423878 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
78423702 AAATTGAATG
* * *
78423712 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
78423751 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
78423791 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
78423831 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
78423871 ATATCCGG
1 ATATCCGG
78423879 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:78432316 original size:40 final size:40
Alignment explanation
Indices: 78432208--78432417 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
78432198 CGGGATTTAA
* * * * *
78432208 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
78432248 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
78432288 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
78432328 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
78432368 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
78432408 CCGGATATAT
1 CCGGATATAT
78432418 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:78441286 original size:30 final size:30
Alignment explanation
Indices: 78441250--78441350 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
78441240 GACAAGATTG
* * *
78441250 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
78441280 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
78441308 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
78441337 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
78441351 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:78441362 original size:29 final size:28
Alignment explanation
Indices: 78441279--78441354 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
78441269 AAAATTGTAC
* *
78441279 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
78441307 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
78441336 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
78441355 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:78449171 original size:30 final size:30
Alignment explanation
Indices: 78449135--78449235 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
78449125 GACAAGATTG
* * *
78449135 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
78449165 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
78449193 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
78449222 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
78449236 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:78449247 original size:29 final size:28
Alignment explanation
Indices: 78449164--78449239 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
78449154 AAAATTGTAC
* *
78449164 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
78449192 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
78449221 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
78449240 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:78451931 original size:17 final size:19
Alignment explanation
Indices: 78451905--78451939 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
78451895 TATTAAATTA
78451905 AAATATTATAATA-ATTTT
1 AAATATTATAATATATTTT
78451923 AAATA-TATAATATATTT
1 AAATATTATAATATATTT
78451940 ATTTAAGATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
AAATATTATAATATATTTT
Found at i:78458598 original size:40 final size:40
Alignment explanation
Indices: 78458545--78458693 Score: 246
Period size: 40 Copynumber: 3.7 Consensus size: 40
78458535 ACTACTTGCT
78458545 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
78458585 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
78458625 CAAATGCCTTCGGGACTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
78458665 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
78458694 CATCCGAATA
Statistics
Matches: 102, Mismatches: 5, Indels: 4
0.92 0.05 0.04
Matches are distributed among these distances:
39 1 0.01
40 100 0.98
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:78462251 original size:39 final size:39
Alignment explanation
Indices: 78462204--78462346 Score: 232
Period size: 39 Copynumber: 3.6 Consensus size: 39
78462194 AATGTTCGAG
78462204 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
78462243 TGATATCCGGGCTAAGCCCGAAGGCAATTGGGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
78462282 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
78462321 TGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
78462347 CTTTGTACGG
Statistics
Matches: 97, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 88 0.91
40 9 0.09
ACGTcount: A:0.26, C:0.21, G:0.31, T:0.22
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:78467064 original size:19 final size:18
Alignment explanation
Indices: 78467042--78467081 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
78467032 ACGAAATTTT
78467042 AATTAGTATTATGAGATAA
1 AATTAGTATTATGAGA-AA
* *
78467061 AATTATTATTATTAGAAA
1 AATTAGTATTATGAGAAA
78467079 AAT
1 AAT
78467082 ATCACTGCAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 5 0.26
19 14 0.74
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (18 bp):
AATTAGTATTATGAGAAA
Found at i:78467438 original size:43 final size:43
Alignment explanation
Indices: 78467308--78467456 Score: 131
Period size: 43 Copynumber: 3.5 Consensus size: 43
78467298 CAATATGTGT
* * * * * * * *
78467308 TTTCGTGTGAGACCACGTCTGGGACATTGACATCGATTTGTGA
1 TTTCATGTAAGACCATGTCTGAGACATCGGCATCGATATATGA
* * *
78467351 TTTACATGTAAGACAATGTCTGGGACATCGGCATCG-TATTTGA
1 TTT-CATGTAAGACCATGTCTGAGACATCGGCATCGATATATGA
* *
78467394 TTTCATGTAAGACCTTGTCTGAGATAGT-GGCATCGATATATGA
1 TTTCATGTAAGACCATGTCTGAGACA-TCGGCATCGATATATGA
* *
78467437 TTACATGTAAGACCACGTCT
1 TTTCATGTAAGACCATGTCT
78467457 AGGACGTTGT
Statistics
Matches: 87, Mismatches: 16, Indels: 6
0.80 0.15 0.06
Matches are distributed among these distances:
42 26 0.30
43 35 0.40
44 26 0.30
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.33
Consensus pattern (43 bp):
TTTCATGTAAGACCATGTCTGAGACATCGGCATCGATATATGA
Found at i:78467565 original size:11 final size:11
Alignment explanation
Indices: 78467549--78467574 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
78467539 ACAAAATGAG
78467549 ACATAATTTTT
1 ACATAATTTTT
78467560 ACATAATTTTT
1 ACATAATTTTT
78467571 ACAT
1 ACAT
78467575 CCAAATTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.12, G:0.00, T:0.50
Consensus pattern (11 bp):
ACATAATTTTT
Found at i:78470301 original size:40 final size:40
Alignment explanation
Indices: 78470252--78470459 Score: 258
Period size: 40 Copynumber: 5.2 Consensus size: 40
78470242 TCTTCGGAAT
* * *
78470252 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* * ** * *
78470291 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* *
78470331 TTAGCCCGGATATAA-CAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAATC-ACTAGCACAAATGCCTTCGGGTC
* *
78470371 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* *
78470411 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
78470451 TTAGCCCGG
1 TTAGCCCGG
78470460 TATCATTCAA
Statistics
Matches: 146, Mismatches: 20, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
39 3 0.02
40 142 0.97
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
Found at i:78476221 original size:40 final size:40
Alignment explanation
Indices: 78476173--78476380 Score: 258
Period size: 40 Copynumber: 5.2 Consensus size: 40
78476163 TTCTTCGAAT
* * *
78476173 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* * ** * *
78476212 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* *
78476252 TTAGCCCGGATATAA-CAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAATC-ACTAGCACAAATGCCTTCGGGTC
* *
78476292 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* *
78476332 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
78476372 TTAGCCCGG
1 TTAGCCCGG
78476381 GTATCATTCA
Statistics
Matches: 146, Mismatches: 20, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
39 3 0.02
40 142 0.97
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
Found at i:78478339 original size:51 final size:51
Alignment explanation
Indices: 78478255--78478394 Score: 158
Period size: 51 Copynumber: 2.7 Consensus size: 51
78478245 CGGATACTCG
*
78478255 GTGGCCTGCACATAGTACCACCCTTGT-AGTCAAAGCTACCTTCTT-CACAAA
1 GTGGCCTGCACATAGTACCACACTTGTGA-TCAAAGCTACC-TCTTACACAAA
* * * * *
78478306 GTGGCCTTCACATAGTACCACACTTGTGATCAAAACCATCTCTTACACATA
1 GTGGCCTGCACATAGTACCACACTTGTGATCAAAGCTACCTCTTACACAAA
* * * *
78478357 GCGGCCTGCACTTAGTACCACACATGTGATCGAAGCTA
1 GTGGCCTGCACATAGTACCACACTTGTGATCAAAGCTA
78478395 TCGGGTACGC
Statistics
Matches: 74, Mismatches: 13, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
50 4 0.05
51 69 0.93
52 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.16, T:0.25
Consensus pattern (51 bp):
GTGGCCTGCACATAGTACCACACTTGTGATCAAAGCTACCTCTTACACAAA
Found at i:78478408 original size:51 final size:51
Alignment explanation
Indices: 78478308--78478436 Score: 141
Period size: 51 Copynumber: 2.5 Consensus size: 51
78478298 TTCACAAAGT
* * * * *
78478308 GGCCTTCACATAGTACCACACTTGTGATCAAAACCATCTCTTACACATAGC
1 GGCCTGCACTTAGTACCACACATGTGATCAAAACCATCGCGTACACATAGC
* * * * * *
78478359 GGCCTGCACTTAGTACCACACATGTGATCGAAGCTATCGGGTACGCATAGT
1 GGCCTGCACTTAGTACCACACATGTGATCAAAACCATCGCGTACACATAGC
* *
78478410 AGCCTGCACTTAGTACTACACATGTGA
1 GGCCTGCACTTAGTACCACACATGTGA
78478437 CCTAACTATA
Statistics
Matches: 65, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
51 65 1.00
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.25
Consensus pattern (51 bp):
GGCCTGCACTTAGTACCACACATGTGATCAAAACCATCGCGTACACATAGC
Found at i:78478473 original size:50 final size:50
Alignment explanation
Indices: 78478349--78478536 Score: 196
Period size: 50 Copynumber: 3.7 Consensus size: 50
78478339 AACCATCTCT
** * * * **
78478349 TACACATAGCGGCCTGCACTTAGTACCACACATGTGATCGAAGCTATCGGG
1 TACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAA-CTATATGG
*
78478400 TACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACTATATGG
1 TACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACTATATGG
* * * * * **
78478450 TACACGTAGTAGCCTGCACTTAGTACTACATACGTGACCTAAAACCATTTTC
1 TACACATAGTAGCCTGCACTTAGTACTACACATGTGACCT--AACTATATGG
* *
78478502 AACACATAGTAGCCTGCACATAGTACTACACATGT
1 TACACATAGTAGCCTGCACTTAGTACTACACATGT
78478537 TCTCATAACG
Statistics
Matches: 114, Mismatches: 21, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
50 42 0.37
51 36 0.32
52 36 0.32
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.26
Consensus pattern (50 bp):
TACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACTATATGG
Found at i:78478529 original size:52 final size:50
Alignment explanation
Indices: 78478404--78478533 Score: 161
Period size: 52 Copynumber: 2.6 Consensus size: 50
78478394 ATCGGGTACG
* * **
78478404 CATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACTATATGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATATGCAACA
* * * *
78478454 CGTAGTAGCCTGCACTTAGTACTACATACGTGACCTAAAACCATTTTCAACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCT--AACCATATGCAACA
*
78478506 CATAGTAGCCTGCACATAGTACTACACA
1 CATAGTAGCCTGCACTTAGTACTACACA
78478534 TGTTCTCATA
Statistics
Matches: 67, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
50 33 0.49
52 34 0.51
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.26
Consensus pattern (50 bp):
CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATATGCAACA
Found at i:78481878 original size:19 final size:17
Alignment explanation
Indices: 78481846--78481881 Score: 54
Period size: 19 Copynumber: 2.0 Consensus size: 17
78481836 TACAGCAGCC
78481846 CACATTTTCTACTTATT
1 CACATTTTCTACTTATT
78481863 CACACTTTTACTACTTATT
1 CACA-TTTT-CTACTTATT
78481882 TTATAACTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.24
18 4 0.24
19 9 0.53
ACGTcount: A:0.25, C:0.25, G:0.00, T:0.50
Consensus pattern (17 bp):
CACATTTTCTACTTATT
Found at i:78503345 original size:39 final size:39
Alignment explanation
Indices: 78503229--78503413 Score: 217
Period size: 39 Copynumber: 4.7 Consensus size: 39
78503219 CTTGTTCAAA
* * *** * *
78503229 TGCCTTCGGGACGTAGCCCGGTTATGGTAACCCGCACAAA
1 TGCCTTCGGG-CTTAGCCCGGATATCACAACTCGCACAAT
* * * *
78503269 GGCCTTCGGGACTTAACCCGGATATCACAATTTGCACAAT
1 TGCCTTCGGG-CTTAGCCCGGATATCACAACTCGCACAAT
* *
78503309 TGCCTTCGGGCTTAGCTCGGATATCATAACTCGCACAAT
1 TGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAAT
* *
78503348 TGCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAAT
1 TGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAAT
78503387 TGCCTTCGGGCTTAGCCCGGATATCAC
1 TGCCTTCGGGCTTAGCCCGGATATCAC
78503414 TCGAACATTC
Statistics
Matches: 124, Mismatches: 21, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
39 86 0.69
40 38 0.31
ACGTcount: A:0.23, C:0.29, G:0.23, T:0.25
Consensus pattern (39 bp):
TGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAAT
Found at i:78503378 original size:78 final size:79
Alignment explanation
Indices: 78503229--78503412 Score: 271
Period size: 78 Copynumber: 2.3 Consensus size: 79
78503219 CTTGTTCAAA
* * **
78503229 TGCCTTCGGGACGTAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATAT
1 TGCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATAT
78503294 CACAATTTGCACAAT
65 CACAATTTGCACAAT
* * ** *
78503309 TGCCTTCGGGCTTAGCTCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGATATC
1 TGCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
78503373 ACAATTTGCACAAT
66 ACAATTTGCACAAT
78503387 TGCCTTCGGGCTTAGCCCGGATATCA
1 TGCCTTCGGGCTTAGCCCGGATATCA
78503413 CTCGAACATT
Statistics
Matches: 94, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
78 53 0.56
79 31 0.33
80 10 0.11
ACGTcount: A:0.23, C:0.29, G:0.23, T:0.26
Consensus pattern (79 bp):
TGCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
ACAATTTGCACAAT
Found at i:78511579 original size:40 final size:40
Alignment explanation
Indices: 78511478--78511656 Score: 137
Period size: 40 Copynumber: 4.5 Consensus size: 40
78511468 GAAATTTTAA
* * * * **
78511478 CCGGGTTAAGACCCGAAGGCAATGGTGCTAGTGGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCACTATAT
* * *
78511518 CCGGGCTAAGACCCAAAGGCATTCGTGCGAGTCATTCTAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCACTATAT
* * *
78511558 CCGGGCTAAGACCCGAAGGCATTTGTGC-AATC-GTGATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCACT-ATAT
* * * * * * * *
78511597 CCGGGTTAAGTCCCGTAGGCCTTGGTGCGGGTTACCATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCACTATAT
* *
78511637 CCGGGCTATGTCCCGAAGGC
1 CCGGGCTAAGACCCGAAGGC
78511657 GTTTGAACGA
Statistics
Matches: 109, Mismatches: 27, Indels: 6
0.77 0.19 0.04
Matches are distributed among these distances:
38 1 0.01
39 29 0.27
40 79 0.72
ACGTcount: A:0.22, C:0.25, G:0.30, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCACTATAT
Found at i:78518222 original size:76 final size:76
Alignment explanation
Indices: 78518132--78518401 Score: 278
Period size: 76 Copynumber: 3.6 Consensus size: 76
78518122 AAGACTAGTG
* * **
78518132 GATAACCGTCAACACGGTGTCGCCCT-GAAGGACCAATAGATAATTGTTAACACAGTGTCTCCCT
1 GATAACCATCAACACGGTGTCG-CCTAGAAGGACCAATAGATAATTGTCAACATGGTGTCTCCCT
*
78518196 GAAGGACCAGTA
65 GAAGGATCAGTA
** * * * * * * *
78518208 GATAACTGTCAACACGTTGTTGCCTCGAAAGACTAGTAGATAATTGTCAACATGGTGTCACGCC-
1 GATAACCATCAACACGGTGTCGCCTAGAAGGACCAATAGATAATTGTCAACATGGTGTCTC-CCT
*
78518272 AAAGGATCAGTA
65 GAAGGATCAGTA
* * * *
78518284 GATAACTATCAACACGGTGTTGCCT-GAAGGACCAGTAGATAATCGTCAACATGGTGT-TGCCCT
1 GATAACCATCAACACGGTGTCGCCTAGAAGGACCAATAGATAATTGTCAACATGGTGTCT-CCCT
*
78518347 GAAGGATTAGTA
65 GAAGGATCAGTA
* * *
78518359 GATAACCATCAACACAGTGTCTCCTAAAAGGACCAATAGATAA
1 GATAACCATCAACACGGTGTCGCCTAGAAGGACCAATAGATAA
78518402 CCATTTTGTA
Statistics
Matches: 163, Mismatches: 26, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
74 2 0.01
75 64 0.39
76 95 0.58
77 2 0.01
ACGTcount: A:0.34, C:0.21, G:0.22, T:0.23
Consensus pattern (76 bp):
GATAACCATCAACACGGTGTCGCCTAGAAGGACCAATAGATAATTGTCAACATGGTGTCTCCCTG
AAGGATCAGTA
Found at i:78518371 original size:38 final size:38
Alignment explanation
Indices: 78518132--78518378 Score: 225
Period size: 38 Copynumber: 6.5 Consensus size: 38
78518122 AAGACTAGTG
* * *
78518132 GATAACCGTCAACACGGTGTCGCCCTGAAGGACCAATA
1 GATAACTGTCAACACGGTGTTGCCCTGAAGGACCAGTA
* * *
78518170 GATAATTGTTAACACAGTGTCT-CCCTGAAGGACCAGTA
1 GATAACTGTCAACACGGTGT-TGCCCTGAAGGACCAGTA
* * *
78518208 GATAACTGTCAACACGTTGTTG-CCTCGAAAGACTAGTA
1 GATAACTGTCAACACGGTGTTGCCCT-GAAGGACCAGTA
* * ** * *
78518246 GATAATTGTCAACATGGTGTCACGCC-AAAGGATCAGTA
1 GATAACTGTCAACACGGTGTTGC-CCTGAAGGACCAGTA
*
78518284 GATAACTATCAACACGGTGTTG-CCTGAAGGACCAGTA
1 GATAACTGTCAACACGGTGTTGCCCTGAAGGACCAGTA
* **
78518321 GATAA-TCGTCAACATGGTGTTGCCCTGAAGGATTAGTA
1 GATAACT-GTCAACACGGTGTTGCCCTGAAGGACCAGTA
** *
78518359 GATAACCATCAACACAGTGT
1 GATAACTGTCAACACGGTGT
78518379 CTCCTAAAAG
Statistics
Matches: 164, Mismatches: 36, Indels: 18
0.75 0.17 0.08
Matches are distributed among these distances:
36 3 0.02
37 32 0.20
38 127 0.77
40 2 0.01
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.23
Consensus pattern (38 bp):
GATAACTGTCAACACGGTGTTGCCCTGAAGGACCAGTA
Found at i:78518389 original size:113 final size:113
Alignment explanation
Indices: 78518120--78518402 Score: 284
Period size: 113 Copynumber: 2.5 Consensus size: 113
78518110 ATGTCACCTT
* * * * * ** * * *
78518120 GAAAGACTAGTGGATAACCGTCAACACGGTGTCGCCCTGAAGGACCAATAGATAATTGTTAACAC
1 GAAAGACTAGTAGATAACCATCAACACAGTGTCACGCAAAAGGACCAATAGATAACTATCAACAC
* * *
78518185 AGTGTCTCCCTGAAGGACCAGTAGATAACTGTCAACACGTTGTTGCCTC
66 GGTGT-TGCCTGAAGGACCAGTAGATAACTGTCAACACGGTGTTGCCTC
*** ** * * *
78518234 GAAAGACTAGTAGATAATTGTCAACATGGTGTCACGCCAAAGGATCAGTAGATAACTATCAACAC
1 GAAAGACTAGTAGATAACCATCAACACAGTGTCACGCAAAAGGACCAATAGATAACTATCAACAC
*
78518299 GGTGTTGCCTGAAGGACCAGTAGATAA-TCGTCAACATGGTGTTGCC-C
66 GGTGTTGCCTGAAGGACCAGTAGATAACT-GTCAACACGGTGTTGCCTC
* * *
78518346 TGAAGGATTAGTAGATAACCATCAACACAGTGTCTC-CTAAAAGGACCAATAGATAAC
1 -GAAAGACTAGTAGATAACCATCAACACAGTGTCACGC-AAAAGGACCAATAGATAAC
78518403 CATTTTGTAA
Statistics
Matches: 138, Mismatches: 28, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
112 3 0.02
113 79 0.57
114 56 0.41
ACGTcount: A:0.34, C:0.21, G:0.22, T:0.23
Consensus pattern (113 bp):
GAAAGACTAGTAGATAACCATCAACACAGTGTCACGCAAAAGGACCAATAGATAACTATCAACAC
GGTGTTGCCTGAAGGACCAGTAGATAACTGTCAACACGGTGTTGCCTC
Found at i:78521036 original size:18 final size:18
Alignment explanation
Indices: 78521013--78521053 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
78521003 CTAGACTCGG
78521013 GTTTTGAAAAAGATAAAT
1 GTTTTGAAAAAGATAAAT
78521031 GTTTTGAAAAAGATAAAT
1 GTTTTGAAAAAGATAAAT
*
78521049 ATTTT
1 GTTTT
78521054 ACAAAAATAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.46, C:0.00, G:0.15, T:0.39
Consensus pattern (18 bp):
GTTTTGAAAAAGATAAAT
Found at i:78521059 original size:19 final size:18
Alignment explanation
Indices: 78521014--78521060 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
78521004 TAGACTCGGG
* *
78521014 TTTTGAAAAAGATAAATG
1 TTTTCAAAAAGATAAATA
*
78521032 TTTTGAAAAAGATAAATA
1 TTTTCAAAAAGATAAATA
78521050 TTTTACAAAAA
1 TTTT-CAAAAA
78521061 TACCACGAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
18 21 0.81
19 5 0.19
ACGTcount: A:0.53, C:0.02, G:0.11, T:0.34
Consensus pattern (18 bp):
TTTTCAAAAAGATAAATA
Found at i:78536286 original size:40 final size:40
Alignment explanation
Indices: 78536231--78536474 Score: 301
Period size: 40 Copynumber: 6.1 Consensus size: 40
78536221 TGAATGATAC
* * * * **
78536231 CCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* * * *
78536271 CCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGACTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTG-TTATAT
*
78536311 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
*
78536351 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* *
78536391 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* * ** *
78536431 CCGGGCTAAGACCCGAGGGCATTCGTGCGTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
78536471 CCGG
1 CCGG
78536475 TTGTATTCCG
Statistics
Matches: 182, Mismatches: 20, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
40 180 0.99
41 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
Found at i:78543802 original size:40 final size:40
Alignment explanation
Indices: 78543747--78544030 Score: 383
Period size: 40 Copynumber: 7.1 Consensus size: 40
78543737 TGAATGATAC
* * * **
78543747 CCGGGCTAAGT-CCCGAAGACATTTATGCTAGTAATTATAT
1 CCGGGCTAA-TACCCGAAGGCATTTGTGCAAGTTGTTATAT
* * * * *
78543787 CCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGACTATAT
1 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTG-TTATAT
78543827 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
78543867 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
78543907 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
*
78543947 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTATAT
1 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
* * * ** *
78543987 CCGGGCTAAGACCCGAGGGCATTCGTGCGTGTGGTTATAT
1 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
78544027 CCGG
1 CCGG
78544031 TTGTATTCCG
Statistics
Matches: 221, Mismatches: 20, Indels: 6
0.89 0.08 0.02
Matches are distributed among these distances:
40 219 0.99
41 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (40 bp):
CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
Found at i:78551352 original size:40 final size:40
Alignment explanation
Indices: 78551297--78551540 Score: 301
Period size: 40 Copynumber: 6.1 Consensus size: 40
78551287 TGAATGATAC
* * * * **
78551297 CCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* * * *
78551337 CCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGACTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTG-TTATAT
*
78551377 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
*
78551417 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* *
78551457 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* * ** *
78551497 CCGGGCTAAGACCCGAGGGCATTCGTGCGTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
78551537 CCGG
1 CCGG
78551541 TTGTATTCCG
Statistics
Matches: 182, Mismatches: 20, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
40 180 0.99
41 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
Found at i:78571873 original size:230 final size:230
Alignment explanation
Indices: 78571470--78571931 Score: 888
Period size: 230 Copynumber: 2.0 Consensus size: 230
78571460 CTAGTTATGT
*
78571470 TGCCTTGATGGTAAGAATCACATGAGTAAGTTCTAGCTATGAAAATGATTTTGGGATGATATTGT
1 TGCCTTGATGGTAAGAATCACATGAGTAAGTTCTAGCTATGAAAATGATTTTAGGATGATATTGT
*
78571535 AATTGTTGGCCTAAACTCGTGATATATAAGTATGTAGTGATATTAACCTTTGTTCACTCAAGAAT
66 AACTGTTGGCCTAAACTCGTGATATATAAGTATGTAGTGATATTAACCTTTGTTCACTCAAGAAT
78571600 GTTGAGTTGAATTATAATATGCATGGTTGATGTTGTTACTTATTTATATGCAACTTACTAAGCTT
131 GTTGAGTTGAATTATAATATGCATGGTTGATGTTGTTACTTATTTATATGCAACTTACTAAGCTT
*
78571665 TATGCTTACTCCTTCTCTTTTCCATCTTCTTATAG
196 TATGCTTACTCCTTCACTTTTCCATCTTCTTATAG
*
78571700 TGCCTTGATGGTAAGAATCACTTGAGTAAGTTCTAGCTATGAAAATGATTTTAGGATGATATTGT
1 TGCCTTGATGGTAAGAATCACATGAGTAAGTTCTAGCTATGAAAATGATTTTAGGATGATATTGT
78571765 AACTGTTGGCCTAAACTCGTGATATATAAGTATGTAGTGATATTAACCTTTGTTCACTCAAGAAT
66 AACTGTTGGCCTAAACTCGTGATATATAAGTATGTAGTGATATTAACCTTTGTTCACTCAAGAAT
78571830 GTTGAGTTGAATTATAATATGCATGGTTGATGTTGTTACTTATTTATATGCAACTTACTAAGCTT
131 GTTGAGTTGAATTATAATATGCATGGTTGATGTTGTTACTTATTTATATGCAACTTACTAAGCTT
78571895 TATGCTTACTCCTTCACTTTTCCATCTTCTTATAG
196 TATGCTTACTCCTTCACTTTTCCATCTTCTTATAG
78571930 TG
1 TG
78571932 TCGCCAAGCT
Statistics
Matches: 228, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
230 228 1.00
ACGTcount: A:0.28, C:0.14, G:0.18, T:0.41
Consensus pattern (230 bp):
TGCCTTGATGGTAAGAATCACATGAGTAAGTTCTAGCTATGAAAATGATTTTAGGATGATATTGT
AACTGTTGGCCTAAACTCGTGATATATAAGTATGTAGTGATATTAACCTTTGTTCACTCAAGAAT
GTTGAGTTGAATTATAATATGCATGGTTGATGTTGTTACTTATTTATATGCAACTTACTAAGCTT
TATGCTTACTCCTTCACTTTTCCATCTTCTTATAG
Found at i:78585894 original size:46 final size:48
Alignment explanation
Indices: 78585755--78585920 Score: 159
Period size: 46 Copynumber: 3.5 Consensus size: 48
78585745 GACCCAATGC
* * *
78585755 AAGACCATGTCTGGGACATGGCATCGG-TACTGAGATGACAGCTAGTGT
1 AAGACCATGTCTGGAACATGGCATCGGCTAC-GAGATGATAGTTAGTGT
** * *
78585803 AAGA-CATGTCT-GAGACAT-ATATCAGCCT-CGAGATG-TAAGTCAGTGT
1 AAGACCATGTCTGGA-ACATGGCATC-GGCTACGAGATGAT-AGTTAGTGT
*
78585849 AAGA-CATGTCTGGAACAT-GCATCGGCTACGGGATGATAGTTAGTGT
1 AAGACCATGTCTGGAACATGGCATCGGCTACGAGATGATAGTTAGTGT
*
78585895 AAGACCATGTCTGGGACATGGCATCG
1 AAGACCATGTCTGGAACATGGCATCG
78585921 ACACCTTACC
Statistics
Matches: 96, Mismatches: 13, Indels: 18
0.76 0.10 0.14
Matches are distributed among these distances:
45 3 0.03
46 53 0.55
47 29 0.30
48 11 0.11
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (48 bp):
AAGACCATGTCTGGAACATGGCATCGGCTACGAGATGATAGTTAGTGT
Found at i:78588534 original size:40 final size:40
Alignment explanation
Indices: 78588468--78588611 Score: 150
Period size: 40 Copynumber: 3.6 Consensus size: 40
78588458 AAATTGAATG
* * *
78588468 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
78588507 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
78588547 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
*
78588587 CTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
78588612 TTCGTGCACA
Statistics
Matches: 85, Mismatches: 16, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
39 16 0.19
40 69 0.81
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.21
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:78588632 original size:40 final size:40
Alignment explanation
Indices: 78588505--78588634 Score: 156
Period size: 40 Copynumber: 3.2 Consensus size: 40
78588495 ATGCTGGAAA
* *
78588505 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
78588545 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
* *
78588585 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
78588625 TTATATCCGG
1 TTATATCCGG
78588635 TTATTCCGAA
Statistics
Matches: 75, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.05
40 71 0.95
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:78596514 original size:40 final size:40
Alignment explanation
Indices: 78596448--78596598 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
78596438 AAATTGAATG
* * *
78596448 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
78596487 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
78596527 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
78596567 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
78596599 ACGTGGTTAT
Statistics
Matches: 91, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 16 0.18
40 73 0.80
41 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:78596612 original size:40 final size:40
Alignment explanation
Indices: 78596485--78596614 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
78596475 ATGCTGGAAA
* * *
78596485 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
78596525 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
78596565 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
78596605 TTATATCCGG
1 TTATATCCGG
78596615 TTATTTCCGA
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:78616324 original size:45 final size:46
Alignment explanation
Indices: 78616202--78616325 Score: 216
Period size: 45 Copynumber: 2.7 Consensus size: 46
78616192 TGGTTGAGCA
*
78616202 TCCGAACTCGTTGAGTTGAGTCCGAGTTCAC-TATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
78616247 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
*
78616293 -CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
78616326 GGGCGGGTTA
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
45 63 0.83
46 13 0.17
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:78623782 original size:47 final size:46
Alignment explanation
Indices: 78623665--78623837 Score: 198
Period size: 45 Copynumber: 3.8 Consensus size: 46
78623655 GGATGGTTGA
78623665 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAAT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTA-GGATGCGAAT
* *
78623712 G--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GT-GAGATG-TAACT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTAG-GATGCGAA-T
*
78623755 AGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC
1 --GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAC-TA-GGATGCGAAT
*
78623805 GC--CCGAGCTCGTTGAGTTGAGTCCGAGTTCACT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACT
78623838 TAGGGGCGGG
Statistics
Matches: 109, Mismatches: 6, Indels: 24
0.78 0.04 0.17
Matches are distributed among these distances:
42 3 0.03
43 5 0.05
44 1 0.01
45 31 0.28
46 29 0.27
47 30 0.28
48 2 0.02
49 1 0.01
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (46 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTAGGATGCGAAT
Found at i:78623834 original size:93 final size:92
Alignment explanation
Indices: 78623665--78623834 Score: 304
Period size: 93 Copynumber: 1.8 Consensus size: 92
78623655 GGATGGTTGA
* *
78623665 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAATGTCCGAACTCGTTGAGTT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAACGCCCGAACTCGTTGAGTT
78623730 GAGTCCGAGTTCGTGAGATGTAACTAG
66 GAGTCCGAGTTCGTGAGATGTAACTAG
*
78623757 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAC-TATGGATGCGAACGCCCGAACTCGTTGAGT
78623822 TGAGTCCGAGTTC
65 TGAGTCCGAGTTC
78623835 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 34 0.46
93 40 0.54
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAACGCCCGAACTCGTTGAGTT
GAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:78625865 original size:25 final size:26
Alignment explanation
Indices: 78625837--78625930 Score: 95
Period size: 26 Copynumber: 3.7 Consensus size: 26
78625827 AGGGCTGATC
78625837 TTTTAGATACGCCAC-AAGGCTTTCA
1 TTTTAGATACGCCACAAAGGCTTTCA
* *
78625862 TTTTAGATTA-GCCACAAAGACTTCCA
1 TTTTAGA-TACGCCACAAAGGCTTTCA
* *
78625888 TTTAAGATACACCACAAAGGC-TTCTA
1 TTTTAGATACGCCACAAAGGCTTTC-A
* *
78625914 TTATAGATATGCCACAA
1 TTTTAGATACGCCACAA
78625931 GATATGCCAC
Statistics
Matches: 55, Mismatches: 10, Indels: 7
0.76 0.14 0.10
Matches are distributed among these distances:
25 16 0.29
26 39 0.71
ACGTcount: A:0.35, C:0.22, G:0.13, T:0.30
Consensus pattern (26 bp):
TTTTAGATACGCCACAAAGGCTTTCA
Found at i:78625921 original size:26 final size:25
Alignment explanation
Indices: 78625821--78625930 Score: 84
Period size: 26 Copynumber: 4.3 Consensus size: 25
78625811 TTGGGTGGTT
*
78625821 GCCACAAGGGCTGATCT-TTTAGATAC
1 GCCACAAAGGCT--TCTATTTAGATAC
78625847 GCCAC-AAGGCTT-TCATTTTAGATTA-
1 GCCACAAAGGCTTCT-A-TTTAGA-TAC
* *
78625872 GCCACAAAGACTTCCATTTAAGATAC
1 GCCACAAAGGCTTCTATTT-AGATAC
* *
78625898 ACCACAAAGGCTTCTATTATAGATAT
1 GCCACAAAGGCTTCTATT-TAGATAC
78625924 GCCACAA
1 GCCACAA
78625931 GATATGCCAC
Statistics
Matches: 67, Mismatches: 8, Indels: 18
0.72 0.09 0.19
Matches are distributed among these distances:
22 1 0.01
23 1 0.01
25 21 0.31
26 43 0.64
27 1 0.01
ACGTcount: A:0.34, C:0.24, G:0.15, T:0.27
Consensus pattern (25 bp):
GCCACAAAGGCTTCTATTTAGATAC
Found at i:78625935 original size:12 final size:12
Alignment explanation
Indices: 78625918--78625942 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
78625908 CTTCTATTAT
78625918 AGATATGCCACA
1 AGATATGCCACA
78625930 AGATATGCCACA
1 AGATATGCCACA
78625942 A
1 A
78625943 AGGCTTCCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.24, G:0.16, T:0.16
Consensus pattern (12 bp):
AGATATGCCACA
Found at i:78632737 original size:21 final size:20
Alignment explanation
Indices: 78632706--78632747 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 20
78632696 CCCTTGAAAC
78632706 AGGGCACACG-CTTGTGTGGA
1 AGGGCACACGCCTT-TGTGGA
78632726 AGGGCAACACGCCTTTGTGGA
1 AGGGC-ACACGCCTTTGTGGA
78632747 A
1 A
78632748 TTAAATTATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 5 0.25
21 12 0.60
22 3 0.15
ACGTcount: A:0.24, C:0.21, G:0.36, T:0.19
Consensus pattern (20 bp):
AGGGCACACGCCTTTGTGGA
Found at i:78633851 original size:47 final size:45
Alignment explanation
Indices: 78633782--78634046 Score: 220
Period size: 47 Copynumber: 5.7 Consensus size: 45
78633772 AGGGTATAAT
78633782 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATTCATCAA
1 GTCGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCA-TCATCAA
* * *
78633829 GTCGATGCCATGTCCCAGACATGGTCTTACACTGACACATC-TCGTA
1 GTCGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCATCATC-AA
* * * * * *
78633875 GCCGATG-CATGTCCCAAACATGTCTTACAATGGCTTACGTCATGAG
1 GTCGATGCCATGTCCCAGACATGTCTTACACTGGC-T-CATCATCAA
* * *
78633921 GCCGATGCCATGTCCCAGACATGTCTTACACTAGCTCTTATC-TTAA
1 GTCGATGCCATGTCCCAGACATGTCTTACACTGGCTC--ATCATCAA
*
78633967 -TGCTGATGCCATGTCCTAGACATGATCTTACACTGGCTC-TCAT-AA
1 GT-C-GATGCCATGTCCCAGACATG-TCTTACACTGGCTCATCATCAA
*
78634012 TGTGGCCGATG-CATGTCCTAGACATGTCTTACACT
1 -GT---CGATGCCATGTCCCAGACATGTCTTACACT
78634047 AGCACACCAA
Statistics
Matches: 181, Mismatches: 22, Indels: 31
0.77 0.09 0.13
Matches are distributed among these distances:
44 11 0.06
45 20 0.11
46 33 0.18
47 99 0.55
48 17 0.09
49 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (45 bp):
GTCGATGCCATGTCCCAGACATGTCTTACACTGGCTCATCATCAA
Found at i:78638206 original size:46 final size:46
Alignment explanation
Indices: 78638075--78638206 Score: 169
Period size: 47 Copynumber: 2.8 Consensus size: 46
78638065 AACACGTAAC
*
78638075 ATTTTGTAAAGCCTTTGTGGCATATTCAT-TAAAGCCTTTGTGGTGT
1 ATTTTGTAAAGCCTTTGTGGCATATTC-TGTAAAGCCTTTATGGTGT
* * *
78638121 ATTATGTAAAGCCTTTTGTGGCGTATTCTGTAAAACCTTTATGGTGT
1 ATTTTGTAAAGCC-TTTGTGGCATATTCTGTAAAGCCTTTATGGTGT
* *
78638168 ATTTTGTAATG-CTTGTGTGGCATATTCTGTAATGCCTTT
1 ATTTTGTAAAGCCTT-TGTGGCATATTCTGTAAAGCCTTT
78638207 GAGGCAATAT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
45 2 0.03
46 35 0.47
47 37 0.50
ACGTcount: A:0.21, C:0.13, G:0.21, T:0.45
Consensus pattern (46 bp):
ATTTTGTAAAGCCTTTGTGGCATATTCTGTAAAGCCTTTATGGTGT
Found at i:78638212 original size:23 final size:23
Alignment explanation
Indices: 78638079--78638212 Score: 119
Period size: 23 Copynumber: 5.8 Consensus size: 23
78638069 CGTAACATTT
78638079 TGTAAAGCCTTTGTGGCATATTC
1 TGTAAAGCCTTTGTGGCATATTC
** *
78638102 AT-TAAAGCCTTTGTGGTGTATTA
1 -TGTAAAGCCTTTGTGGCATATTC
*
78638125 TGTAAAGCCTTTTGTGGCGTATTC
1 TGTAAAGCC-TTTGTGGCATATTC
* * ** *
78638149 TGTAAAACCTTTATGGTGTATTT
1 TGTAAAGCCTTTGTGGCATATTC
*
78638172 TGTAATG-CTTGTGTGGCATATTC
1 TGTAAAGCCTT-TGTGGCATATTC
* *
78638195 TGTAATGCCTTTGAGGCA
1 TGTAAAGCCTTTGTGGCA
78638213 ATATCTCGAT
Statistics
Matches: 90, Mismatches: 16, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
22 4 0.04
23 62 0.69
24 24 0.27
ACGTcount: A:0.22, C:0.13, G:0.23, T:0.42
Consensus pattern (23 bp):
TGTAAAGCCTTTGTGGCATATTC
Found at i:78647878 original size:47 final size:48
Alignment explanation
Indices: 78647732--78647903 Score: 168
Period size: 48 Copynumber: 3.6 Consensus size: 48
78647722 ATGTGTGCTC
* * *
78647732 GTGTAAGACCATGTCTAGGAAATGGCATCAGCCACAACATGAGAGCCA
1 GTGTAAGACCATGTCTAGGACATGGCATCAGCCTCGACATGAGAGCCA
* * * ** * * ** *
78647780 CTGTAAGACCATGTCTGGGACATGGCATCGGGATTGAGACAAGAGCTA
1 GTGTAAGACCATGTCTAGGACATGGCATCAGCCTCGACATGAGAGCCA
* * *
78647828 GTGTAAAACC-TGTCTAGGACATGGCATCAACCTCGACATGTGAGCCA
1 GTGTAAGACCATGTCTAGGACATGGCATCAGCCTCGACATGAGAGCCA
*
78647875 GTGTAAGACCATGT-TTGGAACATGGCATC
1 GTGTAAGACCATGTCTAGG-ACATGGCATC
78647904 GGCAGTTCAC
Statistics
Matches: 94, Mismatches: 28, Indels: 4
0.75 0.22 0.03
Matches are distributed among these distances:
47 38 0.40
48 56 0.60
ACGTcount: A:0.31, C:0.22, G:0.27, T:0.21
Consensus pattern (48 bp):
GTGTAAGACCATGTCTAGGACATGGCATCAGCCTCGACATGAGAGCCA
Found at i:78653697 original size:18 final size:17
Alignment explanation
Indices: 78653670--78653703 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
78653660 GAATAAATGT
78653670 TTATAATGTTATGTTAA
1 TTATAATGTTATGTTAA
78653687 TTATGAATGTTATGTTA
1 TTAT-AATGTTATGTTA
78653704 TGTGTATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.32, C:0.00, G:0.15, T:0.53
Consensus pattern (17 bp):
TTATAATGTTATGTTAA
Found at i:78655664 original size:46 final size:46
Alignment explanation
Indices: 78655614--78655788 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
78655604 GGTTGAGCAT
78655614 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
* * * *
78655660 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--GC
78655705 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
*
78655753 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
78655789 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 4 0.04
46 63 0.57
47 28 0.25
48 4 0.04
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
Found at i:78655769 original size:93 final size:93
Alignment explanation
Indices: 78655610--78655780 Score: 333
Period size: 93 Copynumber: 1.8 Consensus size: 93
78655600 GGATGGTTGA
78655610 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
78655675 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
78655703 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
78655768 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
78655781 ACTTATGGGC
Statistics
Matches: 77, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
93 77 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:78659979 original size:29 final size:29
Alignment explanation
Indices: 78659946--78660077 Score: 201
Period size: 29 Copynumber: 4.6 Consensus size: 29
78659936 CCTCCGAACT
** * * *
78659946 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
78659975 TGCACACTTAGTGCCAAATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
78660004 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
78660033 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
78660062 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
78660078 ATCTCGTCAC
Statistics
Matches: 94, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 94 1.00
ACGTcount: A:0.26, C:0.33, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:78668037 original size:29 final size:29
Alignment explanation
Indices: 78668004--78668135 Score: 201
Period size: 29 Copynumber: 4.6 Consensus size: 29
78667994 CCTCCGAACT
** * * *
78668004 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
78668033 TGCACACTTAGTGCCAAATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
78668062 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
78668091 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
78668120 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
78668136 ATCTCAGCAC
Statistics
Matches: 94, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 94 1.00
ACGTcount: A:0.26, C:0.33, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:78684274 original size:14 final size:14
Alignment explanation
Indices: 78684255--78684283 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
78684245 TATGGGGTAA
78684255 TACGATATGTGGAT
1 TACGATATGTGGAT
78684269 TACGATATGTGGAT
1 TACGATATGTGGAT
78684283 T
1 T
78684284 CGTTCCGTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.07, G:0.28, T:0.38
Consensus pattern (14 bp):
TACGATATGTGGAT
Found at i:78685034 original size:38 final size:38
Alignment explanation
Indices: 78684923--78685086 Score: 220
Period size: 38 Copynumber: 4.3 Consensus size: 38
78684913 ATATTCGATG
* *
78684923 TATATCCAGGTTAAATCCGGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* *
78684961 TATATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTAA
1 TATATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTAT
* *
78685001 AATATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* * *
78685039 TATATCCGGGATAAATCCCGCAGGCCTAGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
*
78685077 TATATTCGGG
1 TATATCCGGG
78685087 CCTTCGTGCC
Statistics
Matches: 110, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
38 71 0.65
39 10 0.09
40 29 0.26
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.29
Consensus pattern (38 bp):
TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
Found at i:78685203 original size:43 final size:43
Alignment explanation
Indices: 78685079--78685190 Score: 215
Period size: 43 Copynumber: 2.6 Consensus size: 43
78685069 GCTGGTATTA
78685079 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
78685122 TATTCGGGCCTTCGTGCCTAGCAGGTTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
78685165 TATTCGGGCCTTCGTGCCTAGCAGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGC
78685191 GTAATGCCGG
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 67 1.00
ACGTcount: A:0.10, C:0.26, G:0.34, T:0.30
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
Found at i:78690897 original size:17 final size:17
Alignment explanation
Indices: 78690859--78690897 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
78690849 CTTTTATTAA
78690859 GTTTTTAAGATTCATTC
1 GTTTTTAAGATTCATTC
* *
78690876 ATTTTTAAGATTCATTT
1 GTTTTTAAGATTCATTC
78690893 GTTTT
1 GTTTT
78690898 CTTTTTCAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.23, C:0.08, G:0.10, T:0.59
Consensus pattern (17 bp):
GTTTTTAAGATTCATTC
Found at i:78693903 original size:13 final size:13
Alignment explanation
Indices: 78693885--78693911 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
78693875 GAAGCAATCG
78693885 CACACGGGCGTGT
1 CACACGGGCGTGT
78693898 CACACGGGCGTGT
1 CACACGGGCGTGT
78693911 C
1 C
78693912 CCTACCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:78695716 original size:40 final size:39
Alignment explanation
Indices: 78695658--78695809 Score: 205
Period size: 40 Copynumber: 3.8 Consensus size: 39
78695648 CGGATGATAA
* * * *
78695658 CCGGGCTAAGTCCTGAAGGCATTTGCGCTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TT
78695698 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-T
*
78695738 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TT
* * *
78695778 CCGGGCTATGTCCCGAAGGCATTCGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
78695810 AGCTATATTC
Statistics
Matches: 102, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
39 1 0.01
40 101 0.99
ACGTcount: A:0.21, C:0.24, G:0.30, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATT
Found at i:78695791 original size:80 final size:80
Alignment explanation
Indices: 78695658--78695835 Score: 225
Period size: 80 Copynumber: 2.2 Consensus size: 80
78695648 CGGATGATAA
* * ** *
78695658 CCGGGCTAAGTCCTGAAGGCATTTGCGCTAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTGACTACATCCGGGCTAAGTCCCGAAGGCATTCG
*
78695723 TGCGAGTTA-CTATAT
66 AGCGAG-TAGCTATAT
* * *
78695738 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACATCCGGGCTATGTCCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTGACTACATCCGGGCTAAGTCCCGAAGGCATTCG
78695803 AGCGAGTAGCTATAT
66 AGCGAGTAGCTATAT
* * *
78695818 TC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
78695836 TACCTGGCTT
Statistics
Matches: 85, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
79 16 0.19
80 69 0.81
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTGACTACATCCGGGCTAAGTCCCGAAGGCATTCG
AGCGAGTAGCTATAT
Found at i:78702850 original size:24 final size:23
Alignment explanation
Indices: 78702818--78702926 Score: 137
Period size: 24 Copynumber: 4.6 Consensus size: 23
78702808 ACCAAACGTT
* **
78702818 GCACACATAGTGCTTATTATGTTC
1 GCACACATAGTGCTTAGTA-AATC
*
78702842 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
78702866 GCACACATAGTGCTATAGTAAATC
1 GCACACATAGTGCT-TAGTAAATC
*
78702890 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
78702914 GCACACATAGTGC
1 GCACACATAGTGC
78702927 ATTTGAGATT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
23 2 0.03
24 68 0.89
25 6 0.08
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (23 bp):
GCACACATAGTGCTTAGTAAATC
Found at i:78702892 original size:48 final size:48
Alignment explanation
Indices: 78702818--78702926 Score: 175
Period size: 48 Copynumber: 2.3 Consensus size: 48
78702808 ACCAAACGTT
* **
78702818 GCACACATAGTGCTTATTATGTTCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCTTAGTATAATCGCACACATAGTGCCATAGTAAATC
78702866 GCACACATAGTGCTATAGTA-AATCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCT-TAGTATAATCGCACACATAGTGCCATAGTAAATC
78702914 GCACACATAGTGC
1 GCACACATAGTGC
78702927 ATTTGAGATT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
48 53 0.93
49 4 0.07
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (48 bp):
GCACACATAGTGCTTAGTATAATCGCACACATAGTGCCATAGTAAATC
Found at i:78706318 original size:68 final size:70
Alignment explanation
Indices: 78706246--78706443 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
78706236 ACACCCTGTA
* * * *
78706246 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
78706308 ATAAAT
65 ATAAAT
*
78706314 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
78706379 ATAAAT
65 ATAAAT
*
78706385 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
78706444 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:78706357 original size:41 final size:41
Alignment explanation
Indices: 78706312--78706429 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
78706302 TGAAAGATAA
78706312 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
78706353 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
78706383 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
78706424 ATGTAG
1 ATGTAG
78706430 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:78706369 original size:71 final size:71
Alignment explanation
Indices: 78706280--78706443 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
78706270 GAGATGTATC
78706280 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
78706345 AGGACA
66 AGGACA
78706351 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
78706416 AGGACA
66 AGGACA
78706422 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
78706444 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:78713880 original size:68 final size:70
Alignment explanation
Indices: 78713808--78714005 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
78713798 ACACCCTGTA
* * * *
78713808 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
78713870 ATAAAT
65 ATAAAT
*
78713876 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
78713941 ATAAAT
65 ATAAAT
*
78713947 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
78714006 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:78713919 original size:41 final size:41
Alignment explanation
Indices: 78713874--78713991 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
78713864 TGAAAGATAA
78713874 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
78713915 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
78713945 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
78713986 ATGTAG
1 ATGTAG
78713992 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:78713931 original size:71 final size:71
Alignment explanation
Indices: 78713842--78714005 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
78713832 GAGATGTATC
78713842 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
78713907 AGGACA
66 AGGACA
78713913 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
78713978 AGGACA
66 AGGACA
78713984 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
78714006 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:78716515 original size:38 final size:39
Alignment explanation
Indices: 78716428--78716588 Score: 245
Period size: 39 Copynumber: 4.2 Consensus size: 39
78716418 TATGGTAACC
* *
78716428 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
78716468 -GCACAATTGCCTTCGGGCTTAGCCC-GATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
78716505 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
78716544 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
78716583 CGCACA
1 CGCACA
78716589 TTCATTCACA
Statistics
Matches: 112, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
37 10 0.09
38 32 0.29
39 70 0.62
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:78716517 original size:77 final size:78
Alignment explanation
Indices: 78716428--78716577 Score: 250
Period size: 77 Copynumber: 1.9 Consensus size: 78
78716418 TATGGTAACC
78716428 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT-GCACAATTGCCTTCGGGCTTAGCC
1 CGCACAAATGCCTTCGGG-CTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCC
78716492 C-GATATCATAGCT
65 CGGATATCATAGCT
* * *
78716505 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACAATTGCCTTCGGGCTTAGCCC
1 CGCACAAATGCCTTCGGGCTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCC
78716570 GGATATCA
66 GGATATCA
78716578 CAATTCGCAC
Statistics
Matches: 68, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
76 19 0.28
77 42 0.62
78 7 0.10
ACGTcount: A:0.24, C:0.31, G:0.21, T:0.24
Consensus pattern (78 bp):
CGCACAAATGCCTTCGGGCTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCC
GGATATCATAGCT
Found at i:78716934 original size:24 final size:24
Alignment explanation
Indices: 78716907--78716962 Score: 105
Period size: 24 Copynumber: 2.4 Consensus size: 24
78716897 ATTCGGCATC
78716907 TTATATCATCTCACTTTATTATAA
1 TTATATCATCTCACTTTATTATAA
78716931 TTATATCATCTCACTTTATTATAA
1 TTATATCATCTCACTTTATTATAA
78716955 TT-TATCAT
1 TTATATCAT
78716963 TCAAATTTGA
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
23 6 0.19
24 26 0.81
ACGTcount: A:0.32, C:0.16, G:0.00, T:0.52
Consensus pattern (24 bp):
TTATATCATCTCACTTTATTATAA
Found at i:78722057 original size:40 final size:40
Alignment explanation
Indices: 78721994--78722096 Score: 115
Period size: 40 Copynumber: 2.6 Consensus size: 40
78721984 TGAGGAATTG
* *
78721994 TATCC-GG-TTAAAGACCCGCAGGCTAT-ATGCTGGAATGT
1 TATCCGGGCTTAAAGACCCGCAGGCT-TCATGCTAGAATGC
** *
78722032 TATCCGGGCTTAAAGACCCTTAGGCTTCGTGCTAGAATGC
1 TATCCGGGCTTAAAGACCCGCAGGCTTCATGCTAGAATGC
*
78722072 TATCCGGGC-TAGAGACCCGCAGGCT
1 TATCCGGGCTTAAAGACCCGCAGGCT
78722097 ACGAGCTGGT
Statistics
Matches: 54, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
38 5 0.09
39 16 0.30
40 33 0.61
ACGTcount: A:0.23, C:0.25, G:0.27, T:0.24
Consensus pattern (40 bp):
TATCCGGGCTTAAAGACCCGCAGGCTTCATGCTAGAATGC
Found at i:78738108 original size:45 final size:43
Alignment explanation
Indices: 78738042--78738162 Score: 156
Period size: 45 Copynumber: 2.8 Consensus size: 43
78738032 GCACAGTATT
*
78738042 ATTCGGGCCTTTGAGCTTAGCAGGCTATAATGCCGATGAGATACC
1 ATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGATGA-A-ACC
**
78738087 ATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGATGAAATG
1 ATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGATGAAACC
* *
78738130 ATATCGGG-CTTCGAGCCTAGCAGGCGA-AATGCC
1 AT-TCGGGCCTTTGAGCCTAGCAGGCTATAATGCC
78738163 AGTGAATGAA
Statistics
Matches: 70, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
42 6 0.09
43 20 0.29
44 6 0.09
45 38 0.54
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (43 bp):
ATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGATGAAACC
Found at i:78738711 original size:16 final size:18
Alignment explanation
Indices: 78738680--78738712 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
78738670 AACTCGTCAC
78738680 ACTATCTATCATTTTGGT
1 ACTATCTATCATTTTGGT
78738698 ACTA-CTAT-ATTTTGG
1 ACTATCTATCATTTTGG
78738713 AGCTAGTATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 4 0.27
18 4 0.27
ACGTcount: A:0.24, C:0.15, G:0.12, T:0.48
Consensus pattern (18 bp):
ACTATCTATCATTTTGGT
Found at i:78740492 original size:18 final size:19
Alignment explanation
Indices: 78740458--78740495 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
78740448 AAATGATTTA
*
78740458 TTTATTTCTTTTTTCTTTT
1 TTTATTTCTTCTTTCTTTT
78740477 TTTATTT-TTCTTTCTTTT
1 TTTATTTCTTCTTTCTTTT
78740495 T
1 T
78740496 CTTTTCTACT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.05, C:0.11, G:0.00, T:0.84
Consensus pattern (19 bp):
TTTATTTCTTCTTTCTTTT
Found at i:78740584 original size:17 final size:17
Alignment explanation
Indices: 78740564--78740602 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
78740554 CTTCACAAAG
*
78740564 TTTTTCTTCACTTGATT
1 TTTTTCTTCACTCGATT
78740581 TTTTTCTTCACTCGATT
1 TTTTTCTTCACTCGATT
*
78740598 ATTTT
1 TTTTT
78740603 GACAGTGTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.13, C:0.18, G:0.05, T:0.64
Consensus pattern (17 bp):
TTTTTCTTCACTCGATT
Found at i:78742335 original size:3 final size:3
Alignment explanation
Indices: 78742327--78742415 Score: 178
Period size: 3 Copynumber: 29.7 Consensus size: 3
78742317 AATAAACACA
78742327 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
78742375 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
78742416 ACTAATTATG
Statistics
Matches: 86, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 86 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:78744429 original size:15 final size:13
Alignment explanation
Indices: 78744409--78744453 Score: 54
Period size: 15 Copynumber: 3.2 Consensus size: 13
78744399 TTAGTGCTGA
78744409 TTTTTTCTTCCTCT
1 TTTTTTCTTCCT-T
*
78744423 CTTTTTTCCTCCATT
1 -TTTTTTCTTCC-TT
78744438 TTTTTTCTTCCTT
1 TTTTTTCTTCCTT
78744451 TTT
1 TTT
78744454 GATTTTTCTT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
13 5 0.19
14 10 0.37
15 11 0.41
16 1 0.04
ACGTcount: A:0.02, C:0.27, G:0.00, T:0.71
Consensus pattern (13 bp):
TTTTTTCTTCCTT
Found at i:78747477 original size:21 final size:21
Alignment explanation
Indices: 78747451--78747497 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
78747441 ACGTGTACTG
78747451 TACTGGCAGCTCTACTGCAAT
1 TACTGGCAGCTCTACTGCAAT
* * *
78747472 TACTGGCAGCTTTGCTGTAAT
1 TACTGGCAGCTCTACTGCAAT
78747493 TACTG
1 TACTG
78747498 AATAGTGCCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.34
Consensus pattern (21 bp):
TACTGGCAGCTCTACTGCAAT
Found at i:78747697 original size:34 final size:34
Alignment explanation
Indices: 78747630--78747698 Score: 102
Period size: 34 Copynumber: 2.0 Consensus size: 34
78747620 GCATTTGTTT
* *
78747630 CTGTTACTGTAATGGGCTAAGGCCCGCATTGATA
1 CTGTTACTGTAATGGGCTAAGGCCCACACTGATA
* *
78747664 CTGTTATTGTAATGGGCTAAGGCCCATACTGATA
1 CTGTTACTGTAATGGGCTAAGGCCCACACTGATA
78747698 C
1 C
78747699 AGGACTGTTA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (34 bp):
CTGTTACTGTAATGGGCTAAGGCCCACACTGATA
Found at i:78759761 original size:29 final size:29
Alignment explanation
Indices: 78759728--78759792 Score: 112
Period size: 29 Copynumber: 2.2 Consensus size: 29
78759718 GTGACGAGAT
*
78759728 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
78759757 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
*
78759786 CGGCACT
1 TGGCACT
78759793 GGGTGTGCGA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAAAATA
Found at i:78765607 original size:24 final size:24
Alignment explanation
Indices: 78765567--78765628 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 24
78765557 GATTATGTAG
78765567 AAAGAATAAAGAAATGAA-AAAAAA
1 AAAGAA-AAAGAAATGAAGAAAAAA
* *
78765591 AAAGAAAGAGAATATGAAGAAAAAC
1 AAAGAAAAAGAA-ATGAAGAAAAAA
*
78765616 AAAGAAAAGGAAA
1 AAAGAAAAAGAAA
78765629 AAAAAAGTGT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
23 5 0.16
24 12 0.38
25 15 0.47
ACGTcount: A:0.74, C:0.02, G:0.18, T:0.06
Consensus pattern (24 bp):
AAAGAAAAAGAAATGAAGAAAAAA
Found at i:78766824 original size:29 final size:29
Alignment explanation
Indices: 78766791--78766855 Score: 112
Period size: 29 Copynumber: 2.2 Consensus size: 29
78766781 GTGACGAGAT
*
78766791 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
78766820 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
*
78766849 CGGCACT
1 TGGCACT
78766856 GGGTGTGCGA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAAAATA
Found at i:78771217 original size:64 final size:64
Alignment explanation
Indices: 78771112--78771319 Score: 181
Period size: 67 Copynumber: 3.2 Consensus size: 64
78771102 CATCATGTGT
*
78771112 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATG
1 ACAAGAGAGCTACAAG--A-TA-AATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATG
78771177 TAG
62 TAG
** * * * * *
78771180 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGCT-CCAGGTGATGGACACCATG
1 ACAAGAGAGCTACAAGATAAATGTAGCTAGGTCGCATGGGT-GATACTA--TG-TGTACACCATG
78771244 TAG
62 TAG
* * * * *
78771247 ACAAGAGAGCTACAAGATAAAT-TGGCTAGGTCACATGGGTGGTACTGA-GTTTTCACCATGT-G
1 ACAAGAGAGCTACAAGATAAATGTAGCTAGGTCGCATGGGTGATACT-ATGTGTACACCATGTAG
78771309 TACAAGAGAGC
1 -ACAAGAGAGC
78771320 CGAACACTAT
Statistics
Matches: 115, Mismatches: 18, Indels: 19
0.76 0.12 0.12
Matches are distributed among these distances:
62 1 0.01
63 19 0.17
64 23 0.20
65 6 0.05
66 19 0.17
67 33 0.29
68 14 0.12
ACGTcount: A:0.31, C:0.17, G:0.29, T:0.23
Consensus pattern (64 bp):
ACAAGAGAGCTACAAGATAAATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG
Found at i:78773718 original size:29 final size:29
Alignment explanation
Indices: 78773685--78773816 Score: 156
Period size: 29 Copynumber: 4.6 Consensus size: 29
78773675 GTGACGAGAT
78773685 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
78773714 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * *
78773743 TGGCACTAAATGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* ** * * ***
78773772 CGGCACTGGGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
78773801 TGGCACTATGTGTGCG
1 TGGCACTAAGTGTGCG
78773817 GGCTTAAATT
Statistics
Matches: 87, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 87 1.00
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:78778354 original size:32 final size:32
Alignment explanation
Indices: 78778308--78778388 Score: 108
Period size: 32 Copynumber: 2.5 Consensus size: 32
78778298 ATTGAAATGG
* *
78778308 GCTAGGCCCAACTGATATTGGTTCTGATATGA
1 GCTAGGCCCAACTGATATTGATTCTGAGATGA
* * *
78778340 GCTATGCCCAACTGATATTGATTTTGAGATGG
1 GCTAGGCCCAACTGATATTGATTCTGAGATGA
*
78778372 GCTAGGCCCAATTGATA
1 GCTAGGCCCAACTGATA
78778389 CTGTGATGAG
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 42 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.31
Consensus pattern (32 bp):
GCTAGGCCCAACTGATATTGATTCTGAGATGA
Done.