Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 25 of 318
Found at i:6676095 original size:7 final size:6
Alignment explanation
Indices: 6676082--6676140 Score: 50
Period size: 7 Copynumber: 9.5 Consensus size: 6
6676072 ATTTAAGAAA
* *
6676082 AATAAT ACATAAT AAGTAAT AATAAT ATATAATT AA-AAT AATACT TATAAT
1 AATAAT A-ATAAT AA-TAAT AATAAT A-ATAA-T AATAAT AATAAT AATAAT
6676133 AA-AAT AAT
1 AATAAT AAT
6676141 TTTATAATAT
Statistics
Matches: 43, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
5 8 0.19
6 16 0.37
7 17 0.40
8 2 0.05
ACGTcount: A:0.61, C:0.03, G:0.02, T:0.34
Consensus pattern (6 bp):
AATAAT
Found at i:6676108 original size:36 final size:34
Alignment explanation
Indices: 6676062--6676168 Score: 98
Period size: 36 Copynumber: 3.2 Consensus size: 34
6676052 TAAAAGAGAT
6676062 GTAAAATAATATTTAAGAAAAATAATACATAATAA
1 GTAAAATAATATTTAAGAAAAATAATAC-TAATAA
* ** *
6676097 GTAATAATAATATATAATTAAAATAATACTTATAA
1 GTAA-AATAATATTTAAGAAAAATAATACTAATAA
* *
6676132 -TAAAATAAT-TTTATA-ATATATAATA-TAA-AA
1 GTAAAATAATATTTA-AGAAAAATAATACTAATAA
6676162 GTAAAAT
1 GTAAAAT
6676169 TAAAATAAAA
Statistics
Matches: 60, Mismatches: 9, Indels: 10
0.76 0.11 0.13
Matches are distributed among these distances:
30 2 0.03
31 8 0.13
32 10 0.17
33 7 0.12
34 3 0.05
35 9 0.15
36 21 0.35
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.35
Consensus pattern (34 bp):
GTAAAATAATATTTAAGAAAAATAATACTAATAA
Found at i:6676123 original size:16 final size:16
Alignment explanation
Indices: 6676062--6676168 Score: 76
Period size: 16 Copynumber: 6.4 Consensus size: 16
6676052 TAAAAGAGAT
*
6676062 GTAAAATAATATTTAA
1 GTAAAATAATATATAA
*
6676078 GAAAAATAATACATAATAA
1 GTAAAATAAT--AT-ATAA
6676097 GTAATAATAATATATAA
1 GTAA-AATAATATATAA
*
6676114 TTAAAATAATACTTATAA
1 GTAAAATAATA--TATAA
*
6676132 -TAAAATAATTTTATAA
1 GTAAAATAA-TATATAA
* *
6676148 -T-ATATAATATAAAA
1 GTAAAATAATATATAA
6676162 GTAAAAT
1 GTAAAAT
6676169 TAAAATAAAA
Statistics
Matches: 73, Mismatches: 9, Indels: 18
0.73 0.09 0.18
Matches are distributed among these distances:
14 5 0.07
15 6 0.08
16 25 0.34
17 15 0.21
18 10 0.14
19 6 0.08
20 6 0.08
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.35
Consensus pattern (16 bp):
GTAAAATAATATATAA
Found at i:6678519 original size:22 final size:22
Alignment explanation
Indices: 6678480--6678538 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
6678470 GTCTTAAGAA
*
6678480 TTGTTTTAGTA-TTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
6678501 TTGTTTTAATATTTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
* *
6678523 GT-TTTTAA-ATATATTT
1 TTGTTTTAATATTTATTT
6678539 GATTTATTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.21
21 16 0.47
22 11 0.32
ACGTcount: A:0.24, C:0.00, G:0.07, T:0.69
Consensus pattern (22 bp):
TTGTTTTAATATTTATTTTTAT
Found at i:6678555 original size:26 final size:24
Alignment explanation
Indices: 6678509--6678568 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 24
6678499 ATTTGTTTTA
*
6678509 ATATTTATTTTTATGTTTTTAAAT
1 ATATTTATTTTTATATTTTTAAAT
6678533 ATATTTGATTTATTATATTTTTAAAT
1 ATATTT-ATTT-TTATATTTTTAAAT
* *
6678559 TTTTTTATTT
1 ATATTTATTT
6678569 AATAAAATAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.19
25 8 0.26
26 17 0.55
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.68
Consensus pattern (24 bp):
ATATTTATTTTTATATTTTTAAAT
Found at i:6679185 original size:60 final size:59
Alignment explanation
Indices: 6679115--6679234 Score: 231
Period size: 60 Copynumber: 2.0 Consensus size: 59
6679105 CTTATTTTTT
6679115 CATCAAATTATTGCGTAAACTTTATTTTTAAAATTTTAGTTTTTTTTTTATATTTAAAAA
1 CATCAAATTATTGCGTAAACTTTATTTTTAAAATTTTAG-TTTTTTTTTATATTTAAAAA
6679175 CATCAAATTATTGCGTAAACTTTATTTTTAAAATTTTAGTTTTTTTTTATATTTAAAAA
1 CATCAAATTATTGCGTAAACTTTATTTTTAAAATTTTAGTTTTTTTTTATATTTAAAAA
6679234 C
1 C
6679235 TTAATAGTAT
Statistics
Matches: 60, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
59 21 0.35
60 39 0.65
ACGTcount: A:0.35, C:0.07, G:0.05, T:0.53
Consensus pattern (59 bp):
CATCAAATTATTGCGTAAACTTTATTTTTAAAATTTTAGTTTTTTTTTATATTTAAAAA
Found at i:6682073 original size:15 final size:15
Alignment explanation
Indices: 6682055--6682088 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
6682045 GACTAATTCA
*
6682055 AAAAGTATAAGAATT
1 AAAAGTAAAAGAATT
*
6682070 AAAATTAAAAGAATT
1 AAAAGTAAAAGAATT
6682085 AAAA
1 AAAA
6682089 TTAATCAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.68, C:0.00, G:0.09, T:0.24
Consensus pattern (15 bp):
AAAAGTAAAAGAATT
Found at i:6682102 original size:15 final size:15
Alignment explanation
Indices: 6682063--6682092 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
6682053 CAAAAAGTAT
6682063 AAGAATTAAAATTAA
1 AAGAATTAAAATTAA
6682078 AAGAATTAAAATTAA
1 AAGAATTAAAATTAA
6682093 TCAAATTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.27
Consensus pattern (15 bp):
AAGAATTAAAATTAA
Found at i:6682542 original size:2 final size:2
Alignment explanation
Indices: 6682535--6682565 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
6682525 CTTTTTCTTT
6682535 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
6682566 TAAATATTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:6690972 original size:2 final size:2
Alignment explanation
Indices: 6690965--6690994 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
6690955 AAGTTGAATG
6690965 TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
6690995 TTTGAAAGTG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:6691808 original size:38 final size:38
Alignment explanation
Indices: 6691764--6691847 Score: 98
Period size: 38 Copynumber: 2.2 Consensus size: 38
6691754 GCTTAAAGAC
* *
6691764 CCGCAGGCTATATGCTAGAATTATATTCGGGTTAAAT-
1 CCGCAGGCTATATGCTAGAATTATATCCGAGTTAAATA
* * * *
6691801 CCTGCAGGCTTTGTGCTGGTATTATATCCGAGTTAAATA
1 CC-GCAGGCTATATGCTAGAATTATATCCGAGTTAAATA
6691840 CCGCAGGC
1 CCGCAGGC
6691848 CTAGTGTTGG
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
37 2 0.05
38 35 0.90
39 2 0.05
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.31
Consensus pattern (38 bp):
CCGCAGGCTATATGCTAGAATTATATCCGAGTTAAATA
Found at i:6691859 original size:38 final size:38
Alignment explanation
Indices: 6691783--6691903 Score: 109
Period size: 38 Copynumber: 3.1 Consensus size: 38
6691773 ATATGCTAGA
* * * *
6691783 ATTATATTCGGGTTAAATCCTGCAGGCTTTGTGCTGGT
1 ATTATATCCGAGTTAAATCCTGCAGGCCTAGTGCTGGT
*
6691821 ATTATATCCGAGTTAAATACC-GCAGGCCTAGTGTTGGT
1 ATTATATCCGAGTTAAAT-CCTGCAGGCCTAGTGCTGGT
** * * * *
6691859 ATTATATCTAAGTTTAAAGTCCCGTAGGCTTCGTGCTGGT
1 ATTATATCCGAG-TTAAA-TCCTGCAGGCCTAGTGCTGGT
6691899 ATTAT
1 ATTAT
6691904 GTTCGGGTTT
Statistics
Matches: 68, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
38 40 0.59
39 9 0.13
40 19 0.28
ACGTcount: A:0.23, C:0.17, G:0.23, T:0.37
Consensus pattern (38 bp):
ATTATATCCGAGTTAAATCCTGCAGGCCTAGTGCTGGT
Found at i:6696449 original size:17 final size:18
Alignment explanation
Indices: 6696421--6696459 Score: 62
Period size: 17 Copynumber: 2.2 Consensus size: 18
6696411 TGTTGCAATA
*
6696421 AAAGTAAAAATTAAAAAT
1 AAAGTAAAAATTAAAAAG
6696439 AAAGT-AAAATTAAAAAG
1 AAAGTAAAAATTAAAAAG
6696456 AAAG
1 AAAG
6696460 AGTGAACAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 15 0.75
18 5 0.25
ACGTcount: A:0.72, C:0.00, G:0.10, T:0.18
Consensus pattern (18 bp):
AAAGTAAAAATTAAAAAG
Found at i:6696826 original size:17 final size:18
Alignment explanation
Indices: 6696804--6696840 Score: 67
Period size: 17 Copynumber: 2.1 Consensus size: 18
6696794 TTTCAATTAT
6696804 TTAATGACATTTTAA-AA
1 TTAATGACATTTTAATAA
6696821 TTAATGACATTTTAATAA
1 TTAATGACATTTTAATAA
6696839 TT
1 TT
6696841 TTTTTATGTC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 15 0.79
18 4 0.21
ACGTcount: A:0.43, C:0.05, G:0.05, T:0.46
Consensus pattern (18 bp):
TTAATGACATTTTAATAA
Found at i:6699619 original size:11 final size:10
Alignment explanation
Indices: 6699600--6699641 Score: 50
Period size: 10 Copynumber: 4.2 Consensus size: 10
6699590 TATTTTCCCC
6699600 AAAAATATAT
1 AAAAATATAT
6699610 AAAAAT-TAT
1 AAAAATATAT
* *
6699619 AAAATTATTTT
1 AAAAATA-TAT
6699630 AAAAATATAT
1 AAAAATATAT
6699640 AA
1 AA
6699642 GATGTAATTT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
9 8 0.31
10 10 0.38
11 8 0.31
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (10 bp):
AAAAATATAT
Found at i:6700542 original size:15 final size:16
Alignment explanation
Indices: 6700519--6700552 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
6700509 CCATTTACAA
6700519 CCATCAGCCCAA-TAC
1 CCATCAGCCCAATTAC
*
6700534 CCATTAGCCCAATTAC
1 CCATCAGCCCAATTAC
6700550 CCA
1 CCA
6700553 AACCCACTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 11 0.65
16 6 0.35
ACGTcount: A:0.32, C:0.44, G:0.06, T:0.18
Consensus pattern (16 bp):
CCATCAGCCCAATTAC
Found at i:6701743 original size:12 final size:13
Alignment explanation
Indices: 6701726--6701833 Score: 59
Period size: 12 Copynumber: 8.5 Consensus size: 13
6701716 CTAATGTGTC
6701726 TATATTATGTAT-
1 TATATTATGTATA
6701738 TATATTATGTATA
1 TATATTATGTATA
*
6701751 TATA-TATATATA
1 TATATTATGTATA
* *
6701763 TTTATACAT-TATA
1 TATAT-TATGTATA
* *
6701776 TATACT-T-TAAA
1 TATATTATGTATA
*
6701787 TAT-TATATCTTATA
1 TATAT-TAT-GTATA
6701801 TACTATTATGTATA
1 TA-TATTATGTATA
*
6701815 T-TTTTAGTGTATA
1 TATATTA-TGTATA
6701828 TATATT
1 TATATT
6701834 TGTGAAGCAT
Statistics
Matches: 73, Mismatches: 12, Indels: 20
0.70 0.11 0.19
Matches are distributed among these distances:
11 8 0.11
12 27 0.37
13 18 0.25
14 15 0.21
15 4 0.05
16 1 0.01
ACGTcount: A:0.37, C:0.04, G:0.05, T:0.55
Consensus pattern (13 bp):
TATATTATGTATA
Found at i:6701762 original size:21 final size:22
Alignment explanation
Indices: 6701740--6701815 Score: 61
Period size: 23 Copynumber: 3.5 Consensus size: 22
6701730 TTATGTATTA
*
6701740 TATTATGTATATATATATATA-
1 TATTATATATATATATATATAC
*
6701761 TATT-TATACAT-TATATATAC
1 TATTATATATATATATATATAC
* *
6701781 T-TTAAATATTATATCTTATATAC
1 TATTATATA-TATAT-ATATATAC
*
6701804 TATTATGTATAT
1 TATTATATATAT
6701816 TTTTAGTGTA
Statistics
Matches: 42, Mismatches: 7, Indels: 10
0.71 0.12 0.17
Matches are distributed among these distances:
19 10 0.24
20 9 0.21
21 6 0.14
22 1 0.02
23 11 0.26
24 5 0.12
ACGTcount: A:0.39, C:0.05, G:0.03, T:0.53
Consensus pattern (22 bp):
TATTATATATATATATATATAC
Found at i:6701784 original size:18 final size:17
Alignment explanation
Indices: 6701755--6701794 Score: 53
Period size: 18 Copynumber: 2.3 Consensus size: 17
6701745 TGTATATATA
*
6701755 TATATATATTTATACAT
1 TATATATATTTAAACAT
*
6701772 TATATATACTTTAAATAT
1 TATATATA-TTTAAACAT
6701790 TATAT
1 TATAT
6701795 CTTATATACT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 8 0.40
18 12 0.60
ACGTcount: A:0.42, C:0.05, G:0.00, T:0.53
Consensus pattern (17 bp):
TATATATATTTAAACAT
Found at i:6702082 original size:13 final size:14
Alignment explanation
Indices: 6702052--6702097 Score: 56
Period size: 15 Copynumber: 3.1 Consensus size: 14
6702042 ATTGCTAATG
6702052 TATATGTATATATCA
1 TATATGTATATAT-A
*
6702067 TATATGTTTTATATA
1 TATATG-TATATATA
6702082 TATTATGTATATATA
1 TA-TATGTATATATA
6702097 T
1 T
6702098 TTTCAATATT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
15 17 0.63
16 10 0.37
ACGTcount: A:0.37, C:0.02, G:0.07, T:0.54
Consensus pattern (14 bp):
TATATGTATATATA
Found at i:6702132 original size:22 final size:24
Alignment explanation
Indices: 6702066--6702186 Score: 81
Period size: 24 Copynumber: 4.9 Consensus size: 24
6702056 TGTATATATC
*
6702066 ATATATGTTTTATATATATTATGT
1 ATATATATTTTATATATATTATGT
6702090 ATATATATTTTCA-ATATTATTA-GT
1 ATATATATTTT-ATATA-TATTATGT
6702114 -TATAT-TTTTATATACTATTCTATGT
1 ATATATATTTTATATA-TA-T-TATGT
* ** *
6702139 ACATAT-TTCCATATCATCTTATGT
1 ATATATATTTTATAT-ATATTATGT
*
6702163 ATATATATTCTTAAATACTATTAT
1 ATATATATT-TTATATA-TATTAT
6702187 ATGTATATGT
Statistics
Matches: 75, Mismatches: 11, Indels: 20
0.71 0.10 0.19
Matches are distributed among these distances:
21 1 0.01
22 9 0.12
23 6 0.08
24 27 0.36
25 12 0.16
26 19 0.25
27 1 0.01
ACGTcount: A:0.34, C:0.08, G:0.04, T:0.54
Consensus pattern (24 bp):
ATATATATTTTATATATATTATGT
Found at i:6710957 original size:18 final size:19
Alignment explanation
Indices: 6710917--6710958 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
6710907 ATTTTATGCT
* *
6710917 TTATTTTATTATTATATTA
1 TTATTTTAGTAATATATTA
6710936 -TATTTTAGTAATA-ATTA
1 TTATTTTAGTAATATATTA
6710953 TTATTT
1 TTATTT
6710959 ACTTAAATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
17 4 0.20
18 16 0.80
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.64
Consensus pattern (19 bp):
TTATTTTAGTAATATATTA
Found at i:6718155 original size:14 final size:14
Alignment explanation
Indices: 6718136--6718162 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
6718126 CATGCCCGTG
6718136 CCCGTGTGACTCAA
1 CCCGTGTGACTCAA
6718150 CCCGTGTGACTCA
1 CCCGTGTGACTCA
6718163 CTGACTTGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.19, C:0.37, G:0.22, T:0.22
Consensus pattern (14 bp):
CCCGTGTGACTCAA
Found at i:6720076 original size:13 final size:14
Alignment explanation
Indices: 6720060--6720095 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
6720050 CAATCTCATA
6720060 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
6720073 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
6720086 TCTC-ATTTCA
1 TCTCAATTTCA
6720096 TTCCAATAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:6720085 original size:18 final size:19
Alignment explanation
Indices: 6720047--6720087 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
6720037 TGGTTCATGT
6720047 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
6720066 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
6720084 TTTC
1 TTTC
6720088 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:6720610 original size:18 final size:19
Alignment explanation
Indices: 6720584--6720622 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
6720574 TTTCAATTCA
6720584 ATTCAAATAATCAATATAT
1 ATTCAAATAATCAATATAT
*
6720603 ATTC-AATATTCAATATAT
1 ATTCAAATAATCAATATAT
6720621 AT
1 AT
6720623 ATCTATATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.49, C:0.10, G:0.00, T:0.41
Consensus pattern (19 bp):
ATTCAAATAATCAATATAT
Found at i:6721940 original size:5 final size:5
Alignment explanation
Indices: 6721930--6721966 Score: 65
Period size: 5 Copynumber: 7.4 Consensus size: 5
6721920 TTATGTTTAT
*
6721930 ATATA ATATA ATATA ATATA ATATA ATGTA ATATA AT
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA AT
6721967 TAAAACATAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.41
Consensus pattern (5 bp):
ATATA
Found at i:6728941 original size:74 final size:75
Alignment explanation
Indices: 6728793--6728958 Score: 204
Period size: 74 Copynumber: 2.3 Consensus size: 75
6728783 GCAAAGTGTG
** *
6728793 AAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTATCCATA
1 AAATGTAGGTATGGTATTATCAAATCCATACTGAGTTGAAAAATGTAGGTATGGCATTATCCATA
* **
6728853 CTGAGCTGTG
66 CCGAGCTGAA
6728863 AAATGTAGGTATGGTATTATCAAATCCATACTGAGTT-AAAAATGTAGGTATGGCATT-TCCCAT
1 AAATGTAGGTATGGTATTATCAAATCCATACTGAGTTGAAAAATGTAGGTATGGCATTAT-CCAT
*
6728926 ACCGAGTTGAA
65 ACCGAGCTGAA
6728937 AAATGTAGGTATGGTATT-TCAA
1 AAATGTAGGTATGGTATTATCAA
6728959 TGAGGAAAAC
Statistics
Matches: 83, Mismatches: 7, Indels: 9
0.84 0.07 0.09
Matches are distributed among these distances:
70 14 0.17
73 9 0.11
74 46 0.55
75 14 0.17
ACGTcount: A:0.33, C:0.11, G:0.23, T:0.33
Consensus pattern (75 bp):
AAATGTAGGTATGGTATTATCAAATCCATACTGAGTTGAAAAATGTAGGTATGGCATTATCCATA
CCGAGCTGAA
Found at i:6728956 original size:35 final size:35
Alignment explanation
Indices: 6728793--6728956 Score: 172
Period size: 35 Copynumber: 4.6 Consensus size: 35
6728783 GCAAAGTGTG
* **
6728793 AAATGTAGGTATGGTATCAT-CCATACTGAGTTGTG
1 AAATGTAGGTATGGTAT-TTCCCATACTGAGTTGAA
* **
6728828 AAATGTAGGTATGGTATTAT-CCATACTGAGCTGTG
1 AAATGTAGGTATGGTATT-TCCCATACTGAGTTGAA
6728863 AAATGTAGGTATGGTATTATCAAATCCATACTGAGTT-AA
1 AAATGTAGGTATGGTATT-TC----CCATACTGAGTTGAA
* *
6728902 AAATGTAGGTATGGCATTTCCCATACCGAGTTGAA
1 AAATGTAGGTATGGTATTTCCCATACTGAGTTGAA
6728937 AAATGTAGGTATGGTATTTC
1 AAATGTAGGTATGGTATTTC
6728957 AATGAGGAAA
Statistics
Matches: 114, Mismatches: 8, Indels: 14
0.84 0.06 0.10
Matches are distributed among these distances:
34 11 0.10
35 73 0.64
38 2 0.02
39 17 0.15
40 11 0.10
ACGTcount: A:0.32, C:0.12, G:0.23, T:0.34
Consensus pattern (35 bp):
AAATGTAGGTATGGTATTTCCCATACTGAGTTGAA
Found at i:6736350 original size:74 final size:75
Alignment explanation
Indices: 6736202--6736367 Score: 204
Period size: 74 Copynumber: 2.3 Consensus size: 75
6736192 GCAAAGTGTG
** *
6736202 AAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTATCCATA
1 AAATGTAGGTATGGTATTATCAAATCCATACTGAGTTGAAAAATGTAGGTATGGCATTATCCATA
* **
6736262 CTGAGCTGTG
66 CCGAGCTGAA
6736272 AAATGTAGGTATGGTATTATCAAATCCATACTGAGTT-AAAAATGTAGGTATGGCATT-TCCCAT
1 AAATGTAGGTATGGTATTATCAAATCCATACTGAGTTGAAAAATGTAGGTATGGCATTAT-CCAT
*
6736335 ACCGAGTTGAA
65 ACCGAGCTGAA
6736346 AAATGTAGGTATGGTATT-TCAA
1 AAATGTAGGTATGGTATTATCAA
6736368 TGAGGAAAAC
Statistics
Matches: 83, Mismatches: 7, Indels: 9
0.84 0.07 0.09
Matches are distributed among these distances:
70 14 0.17
73 9 0.11
74 46 0.55
75 14 0.17
ACGTcount: A:0.33, C:0.11, G:0.23, T:0.33
Consensus pattern (75 bp):
AAATGTAGGTATGGTATTATCAAATCCATACTGAGTTGAAAAATGTAGGTATGGCATTATCCATA
CCGAGCTGAA
Found at i:6736365 original size:35 final size:35
Alignment explanation
Indices: 6736202--6736365 Score: 172
Period size: 35 Copynumber: 4.6 Consensus size: 35
6736192 GCAAAGTGTG
* **
6736202 AAATGTAGGTATGGTATCAT-CCATACTGAGTTGTG
1 AAATGTAGGTATGGTAT-TTCCCATACTGAGTTGAA
* **
6736237 AAATGTAGGTATGGTATTAT-CCATACTGAGCTGTG
1 AAATGTAGGTATGGTATT-TCCCATACTGAGTTGAA
6736272 AAATGTAGGTATGGTATTATCAAATCCATACTGAGTT-AA
1 AAATGTAGGTATGGTATT-TC----CCATACTGAGTTGAA
* *
6736311 AAATGTAGGTATGGCATTTCCCATACCGAGTTGAA
1 AAATGTAGGTATGGTATTTCCCATACTGAGTTGAA
6736346 AAATGTAGGTATGGTATTTC
1 AAATGTAGGTATGGTATTTC
6736366 AATGAGGAAA
Statistics
Matches: 114, Mismatches: 8, Indels: 14
0.84 0.06 0.10
Matches are distributed among these distances:
34 11 0.10
35 73 0.64
38 2 0.02
39 17 0.15
40 11 0.10
ACGTcount: A:0.32, C:0.12, G:0.23, T:0.34
Consensus pattern (35 bp):
AAATGTAGGTATGGTATTTCCCATACTGAGTTGAA
Found at i:6740154 original size:18 final size:18
Alignment explanation
Indices: 6740131--6740190 Score: 65
Period size: 18 Copynumber: 3.6 Consensus size: 18
6740121 TTATTTGTTT
6740131 GTTATTCAATAACAATCA
1 GTTATTCAATAACAATCA
* * *
6740149 GTTATTCAGTATCAAACA
1 GTTATTCAATAACAATCA
6740167 ---A-TCAATAACAATCA
1 GTTATTCAATAACAATCA
6740181 GTTATTCAAT
1 GTTATTCAAT
6740191 CCAGTAATAC
Statistics
Matches: 32, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
14 10 0.31
15 1 0.03
17 1 0.03
18 20 0.62
ACGTcount: A:0.43, C:0.17, G:0.07, T:0.33
Consensus pattern (18 bp):
GTTATTCAATAACAATCA
Found at i:6741520 original size:13 final size:13
Alignment explanation
Indices: 6741473--6741544 Score: 53
Period size: 15 Copynumber: 5.5 Consensus size: 13
6741463 AATTTATTTG
6741473 ATAATATTAATAATA
1 ATAAT-TTAAT-ATA
* *
6741488 ATAATTATTATGACA
1 ATAATT-TAAT-ATA
6741503 ATAATTTAATATA
1 ATAATTTAATATA
6741516 ATAATTTAA-ATA
1 ATAATTTAATATA
6741528 A-ATATTT-AT-TA
1 ATA-ATTTAATATA
6741539 ATAATT
1 ATAATT
6741545 AATTATAAGT
Statistics
Matches: 48, Mismatches: 5, Indels: 12
0.74 0.08 0.18
Matches are distributed among these distances:
11 8 0.17
12 9 0.19
13 11 0.23
14 4 0.08
15 16 0.33
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.44
Consensus pattern (13 bp):
ATAATTTAATATA
Found at i:6741649 original size:14 final size:17
Alignment explanation
Indices: 6741630--6741667 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 17
6741620 ATTTATTTCT
6741630 TAATATAA-T-ATTT-A
1 TAATATAATTAATTTAA
6741644 TAATATAATTAATTTAA
1 TAATATAATTAATTTAA
6741661 TAATATA
1 TAATATA
6741668 CTTGATAATC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 8 0.38
15 1 0.05
16 4 0.19
17 8 0.38
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
TAATATAATTAATTTAA
Found at i:6741837 original size:17 final size:17
Alignment explanation
Indices: 6741814--6741852 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
6741804 AAACTTTTAC
*
6741814 CCTTTATTTAATATAGT
1 CCTTTATTCAATATAGT
* *
6741831 TCTTTATTCAATTTAGT
1 CCTTTATTCAATATAGT
6741848 CCTTT
1 CCTTT
6741853 TTCTTAATTA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.23, C:0.15, G:0.05, T:0.56
Consensus pattern (17 bp):
CCTTTATTCAATATAGT
Found at i:6743783 original size:11 final size:11
Alignment explanation
Indices: 6743769--6743808 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
6743759 GTTTTCTCCA
*
6743769 TATTTTGCTAC
1 TATTTTGCTAT
*
6743780 TATTTTACTAT
1 TATTTTGCTAT
*
6743791 TATGTTGCTAT
1 TATTTTGCTAT
6743802 TATTTTG
1 TATTTTG
6743809 TTGTTATTGT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.20, C:0.10, G:0.10, T:0.60
Consensus pattern (11 bp):
TATTTTGCTAT
Found at i:6744388 original size:2 final size:2
Alignment explanation
Indices: 6744381--6744418 Score: 58
Period size: 2 Copynumber: 19.0 Consensus size: 2
6744371 CTTATGTACC
* *
6744381 AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT GT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6744419 TAAATTTGGA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (2 bp):
AT
Found at i:6749086 original size:15 final size:15
Alignment explanation
Indices: 6749066--6749097 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
6749056 ATCAAACTAC
6749066 CTAGGTAGTAGTCTA
1 CTAGGTAGTAGTCTA
6749081 CTAGGTAGTAGTCTA
1 CTAGGTAGTAGTCTA
6749096 CT
1 CT
6749098 GTTGGTATTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.34
Consensus pattern (15 bp):
CTAGGTAGTAGTCTA
Found at i:6750443 original size:19 final size:19
Alignment explanation
Indices: 6750419--6750456 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
6750409 ATCCATCTTT
6750419 TATGTTTGCTTATCATTGA
1 TATGTTTGCTTATCATTGA
6750438 TATGTTTGCTTATCATTGA
1 TATGTTTGCTTATCATTGA
6750457 ATGGATAACC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.21, C:0.11, G:0.16, T:0.53
Consensus pattern (19 bp):
TATGTTTGCTTATCATTGA
Found at i:6754705 original size:42 final size:43
Alignment explanation
Indices: 6754645--6754727 Score: 123
Period size: 42 Copynumber: 2.0 Consensus size: 43
6754635 GAATTGAGTA
* **
6754645 CTTCATTTACTCGATGTCATAGTTCAACTATGGTCTTACACAT
1 CTTCATATACTCGATGTCATAGCCCAACTATGGTCTTACACAT
*
6754688 CTTCATATA-TCGATGTCATAGCCCAGCTATGGTCTTACAC
1 CTTCATATACTCGATGTCATAGCCCAACTATGGTCTTACAC
6754728 GTAATCACAT
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
42 28 0.78
43 8 0.22
ACGTcount: A:0.25, C:0.25, G:0.13, T:0.36
Consensus pattern (43 bp):
CTTCATATACTCGATGTCATAGCCCAACTATGGTCTTACACAT
Found at i:6754740 original size:42 final size:42
Alignment explanation
Indices: 6754655--6754788 Score: 126
Period size: 49 Copynumber: 3.0 Consensus size: 42
6754645 CTTCATTTAC
* * * ** *
6754655 TCGATGTCATAGTTCAACTATGGTCTTACACATCTTCATATA
1 TCGATGTCATAGTCCAGCTATGGTCTTACACGTAATCACATA
*
6754697 TCGATGTCATAGCCCAGCTATGGTCTTACACGTAATCACATATCACATA
1 TCGATGTCATAGTCCAGCTATGGTCTTACACG---T---A-ATCACATA
*
6754746 TCGATGCCATAGTCCAGCTATGGTCTTACACG-AATCACATA
1 TCGATGTCATAGTCCAGCTATGGTCTTACACGTAATCACATA
6754787 TC
1 TC
6754789 TCACTGATGC
Statistics
Matches: 76, Mismatches: 9, Indels: 15
0.76 0.09 0.15
Matches are distributed among these distances:
41 10 0.13
42 29 0.38
45 1 0.01
49 36 0.47
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.31
Consensus pattern (42 bp):
TCGATGTCATAGTCCAGCTATGGTCTTACACGTAATCACATA
Found at i:6754869 original size:47 final size:46
Alignment explanation
Indices: 6754699--6754866 Score: 194
Period size: 47 Copynumber: 3.6 Consensus size: 46
6754689 TTCATATATC
* * * *
6754699 GATGTCATAGCCCAGCTATGGTCTTACACGTAATCACATATCACATAT
1 GATGCCATATCCCAGATATGGTCTTACACGT-ATCACATATCACA-CT
* * *
6754747 CGATGCCATAGT-CCAGCTATGGTCTTACACGAATCACATATCTCACT
1 -GATGCCATA-TCCCAGATATGGTCTTACACGTATCACATATCACACT
* * *
6754794 GATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCACACT
1 GATGCCATATCCCAGATATGGTCTTACAC-GTATCACATATCACACT
6754841 GATGCCATATCCCAGATATGGTCTTA
1 GATGCCATATCCCAGATATGGTCTTA
6754867 TACGGAAATC
Statistics
Matches: 105, Mismatches: 11, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
45 1 0.01
46 25 0.24
47 40 0.38
48 12 0.11
49 27 0.26
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (46 bp):
GATGCCATATCCCAGATATGGTCTTACACGTATCACATATCACACT
Found at i:6754923 original size:31 final size:31
Alignment explanation
Indices: 6754888--6755098 Score: 282
Period size: 31 Copynumber: 6.8 Consensus size: 31
6754878 CTTGTCACTT
*
6754888 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
6754919 GTAGCC-AGAGCTACCATTTTTCATTGATCAG
1 GTAGCCGA-AGCTACCACTTTTCACTGATCAG
* * * *
6754950 GTAGTCGGAGCTACCATTTTTCATTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
6754981 GTAG-CAAGAGCTACCACTTTTCACTTATCAG
1 GTAGCCGA-AGCTACCACTTTTCACTGATCAG
*
6755012 GTAGCAGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
6755043 GTAGTCGAAGCTACCACTTTTCAATGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
6755074 GTAGCCGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
6755099 TGTCATTTGT
Statistics
Matches: 158, Mismatches: 18, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
30 2 0.01
31 155 0.98
32 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:6755047 original size:93 final size:93
Alignment explanation
Indices: 6754888--6755099 Score: 311
Period size: 93 Copynumber: 2.3 Consensus size: 93
6754878 CTTGTCACTT
* * * * *
6754888 GTAGCCGAAGCTACCACTATTCACTGATCAGGTAGCCAGAGCTACCATTTTTCATTGATCAGGTA
1 GTAGCAGAAGCTACCACTTTTCACTTATCAGGTAGCCAGAGCTACCACTTTTCACTGATCAGGTA
* * *
6754953 GTCGGAGCTACCATTTTTCATTGATCAG
66 GTCGAAGCTACCACTTTTCAATGATCAG
6754981 GTAGCA-AGAGCTACCACTTTTCACTTATCAGGTAG-CAGAAGCTACCACTTTTCACTGATCAGG
1 GTAGCAGA-AGCTACCACTTTTCACTTATCAGGTAGCCAG-AGCTACCACTTTTCACTGATCAGG
6755044 TAGTCGAAGCTACCACTTTTCAATGATCAG
64 TAGTCGAAGCTACCACTTTTCAATGATCAG
*
6755074 GTAGCCGAAGCTACCACTTTTCACTT
1 GTAGCAGAAGCTACCACTTTTCACTT
6755100 GTCATTTGTC
Statistics
Matches: 107, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
92 4 0.04
93 102 0.95
94 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (93 bp):
GTAGCAGAAGCTACCACTTTTCACTTATCAGGTAGCCAGAGCTACCACTTTTCACTGATCAGGTA
GTCGAAGCTACCACTTTTCAATGATCAG
Found at i:6755176 original size:50 final size:51
Alignment explanation
Indices: 6755074--6755202 Score: 206
Period size: 50 Copynumber: 2.5 Consensus size: 51
6755064 CAATGATCAG
* * * *
6755074 GTAGCCGAAGCTACCACTTTTCACTTGTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCACTTATCCTTGATCAGATAAGT
*
6755125 GTAGCCGAAGCTATTACTTATCACTT-TCACTTATCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCACTTATCCTTGATCAGATAAGT
6755175 GTAGCCGAAGCTATCACTTATCACTTGT
1 GTAGCCGAAGCTATCACTTATCACTTGT
6755203 TGCCATGGTC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
50 47 0.66
51 24 0.34
ACGTcount: A:0.26, C:0.23, G:0.16, T:0.35
Consensus pattern (51 bp):
GTAGCCGAAGCTATCACTTATCACTTGTCACTTATCCTTGATCAGATAAGT
Found at i:6760977 original size:17 final size:17
Alignment explanation
Indices: 6760955--6760989 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
6760945 CAGAATTAAG
6760955 AAAATTTGTATTTGGAA
1 AAAATTTGTATTTGGAA
6760972 AAAATTTGTATTTGGAA
1 AAAATTTGTATTTGGAA
6760989 A
1 A
6760990 GTACTTAGCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.43, C:0.00, G:0.17, T:0.40
Consensus pattern (17 bp):
AAAATTTGTATTTGGAA
Found at i:6761327 original size:15 final size:15
Alignment explanation
Indices: 6761307--6761337 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
6761297 CTCTTTGAGA
6761307 AAGGAATCTCACACT
1 AAGGAATCTCACACT
6761322 AAGGAATCTCACACT
1 AAGGAATCTCACACT
6761337 A
1 A
6761338 CAATTTTCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.42, C:0.26, G:0.13, T:0.19
Consensus pattern (15 bp):
AAGGAATCTCACACT
Found at i:6765910 original size:138 final size:138
Alignment explanation
Indices: 6765662--6765923 Score: 375
Period size: 138 Copynumber: 1.9 Consensus size: 138
6765652 TGATGTTATA
* * * *
6765662 GTATCTTTCAACTATGGTTTTACTCGTTTTCTGTCATGTTGCCATGGTATCTTTCAACCATGGTC
1 GTATCTTTCAACTATGGTCTTACTCGATTTCTATCACGTTGCCATGGTATCTTTCAACCATGGTC
** * * * * *
6765727 TTATTCATTTTCCGTCATGTTGCCATGGTATCTTTCAACTATGGTCTTACTCATTTCATGTTAGA
66 TTACACATTTTCCATCAGGTTGCCATGGTATCGTTCAACCATGGTCTTACACATTTCATGTTAGA
6765792 TTGCCATG
131 TTGCCATG
*
6765800 GTATCTTTCAACTATGGTCTTATTC-ATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGT
1 GTATCTTTCAACTATGGTCTTACTCGATTTC-TATCACGTTGCCATGGTATCTTTCAACCATGGT
*
6765864 CTTACACA-TTTCATATCAGGTTGCCATGGTATCGTTCAACCATGGTCTTACACATTTCAT
65 CTTACACATTTTC-CATCAGGTTGCCATGGTATCGTTCAACCATGGTCTTACACATTTCAT
6765924 ATCAGGGAGC
Statistics
Matches: 109, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
137 8 0.07
138 101 0.93
ACGTcount: A:0.21, C:0.22, G:0.15, T:0.42
Consensus pattern (138 bp):
GTATCTTTCAACTATGGTCTTACTCGATTTCTATCACGTTGCCATGGTATCTTTCAACCATGGTC
TTACACATTTTCCATCAGGTTGCCATGGTATCGTTCAACCATGGTCTTACACATTTCATGTTAGA
TTGCCATG
Found at i:6765924 original size:46 final size:46
Alignment explanation
Indices: 6765662--6765929 Score: 333
Period size: 46 Copynumber: 5.8 Consensus size: 46
6765652 TGATGTTATA
* * * * *
6765662 GTATCTTTCAACTATGGTTTTACTCGTTTTC-TGTCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTC-ATTTCATATCAGGTTGCCATG
* ** *
6765708 GTATCTTTCAACCATGGTCTTATTCATTTTC-CGTCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCA-TTTCATATCAGGTTGCCATG
* * * *
6765754 GTATCTTTCAACTATGGTCTTACTCATTTCATGTTAGATTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATG
* * *
6765800 GTATCTTTCAACTATGGTCTTATTCATTTCATATCACGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATG
*
6765846 GTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATG
* *
6765892 GTATCGTTCAACCATGGTCTTACACATTTCATATCAGG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCAGG
6765930 GAGCACACTA
Statistics
Matches: 199, Mismatches: 21, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
45 4 0.02
46 195 0.98
ACGTcount: A:0.21, C:0.22, G:0.15, T:0.42
Consensus pattern (46 bp):
GTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATG
Found at i:6768394 original size:16 final size:16
Alignment explanation
Indices: 6768374--6768430 Score: 53
Period size: 16 Copynumber: 3.4 Consensus size: 16
6768364 ATATATAACC
6768374 AATAATAGAAAATAAA
1 AATAATAGAAAATAAA
* *
6768390 CATAA-AGCAAATTAAA
1 AATAATAG-AAAATAAA
*
6768406 AATAAATAGAATATAAA
1 AAT-AATAGAAAATAAA
6768423 TAATAATA
1 -AATAATA
6768431 AATAAATTTA
Statistics
Matches: 32, Mismatches: 5, Indels: 7
0.73 0.11 0.16
Matches are distributed among these distances:
15 2 0.06
16 13 0.41
17 12 0.38
18 5 0.16
ACGTcount: A:0.68, C:0.04, G:0.05, T:0.23
Consensus pattern (16 bp):
AATAATAGAAAATAAA
Found at i:6768790 original size:28 final size:27
Alignment explanation
Indices: 6768730--6768794 Score: 78
Period size: 28 Copynumber: 2.3 Consensus size: 27
6768720 AAAAAATCTA
6768730 AAATAAATAATATATATATAAAAGTTT
1 AAATAAATAATATATATATAAAAGTTT
* *
6768757 AGAATAAATAATGTATATA-AAATTATTTT
1 A-AATAAATAATATATATATAAA--AGTTT
6768786 AAATAAATA
1 AAATAAATA
6768795 GTAAAACAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
27 4 0.12
28 24 0.73
29 5 0.15
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (27 bp):
AAATAAATAATATATATATAAAAGTTT
Found at i:6768854 original size:27 final size:27
Alignment explanation
Indices: 6768824--6768880 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
6768814 GCATTACATT
6768824 AAAACAAGTTAAAATAAATAATATATA
1 AAAACAAGTTAAAATAAATAATATATA
* * * **
6768851 AAAATAATTTAAAATGAATGGTATATA
1 AAAACAAGTTAAAATAAATAATATATA
6768878 AAA
1 AAA
6768881 TATTTTTTTA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.63, C:0.02, G:0.07, T:0.28
Consensus pattern (27 bp):
AAAACAAGTTAAAATAAATAATATATA
Found at i:6770509 original size:44 final size:44
Alignment explanation
Indices: 6770427--6770580 Score: 148
Period size: 44 Copynumber: 3.5 Consensus size: 44
6770417 CTTTTACCTG
* * * * *
6770427 CTCCATTGCAATTTCAGGGAGAAGAGATTTGTATCTTCGATCTA
1 CTCCAATGGAATTTCAAGGAGAAGAGAATTGTAGCTTCGATCTA
** * * *
6770471 CTCCGCTGGAATTTCAAGGAGATGAGAATTGTGGCTTCGAACTA
1 CTCCAATGGAATTTCAAGGAGAAGAGAATTGTAGCTTCGATCTA
* * * *
6770515 CTCCAATGTAGTTTCAAGGAGAAGA-AATTTTTAGTTTCGATCTA
1 CTCCAATGGAATTTCAAGGAGAAGAGAA-TTGTAGCTTCGATCTA
* *
6770559 CTCCAATGGAACTTGAAGGAGA
1 CTCCAATGGAATTTCAAGGAGA
6770581 TAAAAGCTGA
Statistics
Matches: 87, Mismatches: 22, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
43 2 0.02
44 85 0.98
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.31
Consensus pattern (44 bp):
CTCCAATGGAATTTCAAGGAGAAGAGAATTGTAGCTTCGATCTA
Found at i:6770866 original size:131 final size:133
Alignment explanation
Indices: 6770621--6770892 Score: 324
Period size: 131 Copynumber: 2.1 Consensus size: 133
6770611 GCAACACAAT
* * *
6770621 GAGATAAAATCTACAATTTTCAGTCTGCTCCCTTGCTACTTCAGAAAGATAAGACTGGTGGCTTA
1 GAGATAAGATCTACAATTTTCAGCCTGCTCCCTTGCTACTTCAGAAAGATAAGACTAGTGGCTTA
* *
6770686 AATCTGCTCCCTTACTACCTTGGGAAGATAAGACTCGTTATCCTCGATCTGCTCCACTACTGCTT
66 AATCTGCTCCCTTACTACCTTGGGAAGATAAGACTCGTCATCCTCGATCTGCTCCACTACTGCTC
6770751 AGG
131 AGG
* * *
6770754 GAGATAAGATCTACAATCTTT-AGCCTGCTCCAC-TGTTGC-TCAGGAAGATAAG-CTAGTGGCT
1 GAGATAAGATCTACAAT-TTTCAGCCTGCTCC-CTTGCTACTTCAGAAAGATAAGACTAGTGGCT
* * * * *
6770815 TAAATCTGCTTCCC-TACTACCTCT-GGAAGATAAGATTCG-CAGTCTTTGATCTGTTCCACTGC
64 TAAATCTGC-TCCCTTACTACCT-TGGGAAGATAAGACTCGTCA-TCCTCGATCTGCTCCACTAC
6770877 TGCTCAGG
126 TGCTCAGG
*
6770885 GAAATAAG
1 GAGATAAG
6770893 GCTGGTGGCT
Statistics
Matches: 120, Mismatches: 14, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
130 1 0.01
131 69 0.57
132 17 0.14
133 29 0.24
134 4 0.03
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.30
Consensus pattern (133 bp):
GAGATAAGATCTACAATTTTCAGCCTGCTCCCTTGCTACTTCAGAAAGATAAGACTAGTGGCTTA
AATCTGCTCCCTTACTACCTTGGGAAGATAAGACTCGTCATCCTCGATCTGCTCCACTACTGCTC
AGG
Found at i:6770962 original size:88 final size:87
Alignment explanation
Indices: 6770778--6770962 Score: 248
Period size: 88 Copynumber: 2.1 Consensus size: 87
6770768 AATCTTTAGC
* * * *
6770778 CTGCTCCACTGTTGCTCAGGAAGATAAGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCTGGAA
1 CTGCTCCACTGCTGCTCAGGAAGATAAGCTAGTGGCTAAAATCTGCTCCCCTACTACCTCAGGAA
6770843 GATAAGATTCGCAGTCTTTGAT
66 GATAAGATTCGCAGTCTTTGAT
* * *
6770865 CTGTTCCACTGCTGCTCAGGGAA-ATAAGGCTGGTGGCTAAAATCTGCTCCCCTGCTACCTCAGG
1 CTGCTCCACTGCTGCTCA-GGAAGATAA-GCTAGTGGCTAAAATCTGCTCCCCTACTACCTCAGG
*
6770929 AAGATAAGATTCGCCG-CTTTTGAT
64 AAGATAAGATTCGCAGTC-TTTGAT
*
6770953 CTGCCCCACT
1 CTGCTCCACT
6770963 ACTATTTTAA
Statistics
Matches: 85, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
87 21 0.25
88 64 0.75
ACGTcount: A:0.23, C:0.27, G:0.22, T:0.29
Consensus pattern (87 bp):
CTGCTCCACTGCTGCTCAGGAAGATAAGCTAGTGGCTAAAATCTGCTCCCCTACTACCTCAGGAA
GATAAGATTCGCAGTCTTTGAT
Found at i:6771070 original size:44 final size:44
Alignment explanation
Indices: 6770984--6771070 Score: 113
Period size: 44 Copynumber: 2.0 Consensus size: 44
6770974 GAGACAAAAT
*** *
6770984 CTACAATCTTCAGTTTGCTCCCTTGCTACCTCAGAAAGATAAGA
1 CTACAATCTTCAACCTGCTCCCTTGCTACCTCAGAAAAATAAGA
*
6771028 CTACAATCTTCAACCTGCTCCCTTGGTACCTCA-AAGAAATAAG
1 CTACAATCTTCAACCTGCTCCCTTGCTACCTCAGAA-AAATAAG
6771071 GCTGGTGGCT
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
43 2 0.05
44 35 0.95
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.28
Consensus pattern (44 bp):
CTACAATCTTCAACCTGCTCCCTTGCTACCTCAGAAAAATAAGA
Found at i:6771134 original size:178 final size:178
Alignment explanation
Indices: 6770885--6771340 Score: 614
Period size: 178 Copynumber: 2.6 Consensus size: 178
6770875 GCTGCTCAGG
* *
6770885 GAAATAAGGCTGGTGGCTAAAATCTGCTCCCCTGCTACC-TCAGGAAGATAAGATTCGCCGCTTT
1 GAAATAAGGCTGGTGGCTAAAATCTGCTCCCCTGCTACCTTGA-GAAGATAAGATTCGCC-ATTT
* * * * *
6770949 T-GATCTGCCCCACTACTATTTTAAGGAGACAAAATCTACAATCTTCAGTTTGCTCCCTTGCTAC
64 TCGATCTGCCCCACTGCTATTTCAAGGAGACAAAATCTACAATCTTCAGTCTGCTCCATTACTAC
* *
6771013 CTCAGAAAGATAAGACTACAATCTTCAACCTGCTCCCTTGGTACCTCAAA
129 CTCAGAAAGATAAGACTACAATCTTCAACCTGCTCCCTTGCTACATCAAA
* * *
6771063 GAAATAAGGCTGGTGGCTAAAATCTGCTTCCCTCCTACCTTGAGAAGATAAGATTCACCATTTTC
1 GAAATAAGGCTGGTGGCTAAAATCTGCTCCCCTGCTACCTTGAGAAGATAAGATTCGCCATTTTC
* * * * *
6771128 GATCTGCCTCACTGCTATCTCGAGGAGACAAAACCTATAATCTTCAGTCTGCTCCATTACTACCT
66 GATCTGCCCCACTGCTATTTCAAGGAGACAAAATCTACAATCTTCAGTCTGCTCCATTACTACCT
* * *
6771193 CAGGAAGATAAGACTACAATCTTTAGCCTGCTCCCTTGCTACATCAAA
131 CAGAAAGATAAGACTACAATCTTCAACCTGCTCCCTTGCTACATCAAA
* * * * *
6771241 G--ATAAGGCTAGTGGCTAAAATCTGCTCCCCTGCTACCTCGGGAAGATAAGATTCGCCGTTCTC
1 GAAATAAGGCTGGTGGCTAAAATCTGCTCCCCTGCTACCTTGAGAAGATAAGATTCGCCATTTTC
* * *
6771304 GATCTGCTCCACTGCAATTTCAGGGAGACAAAATCTA
66 GATCTGCCCCACTGCTATTTCAAGGAGACAAAATCTA
6771341 AATTCACCGA
Statistics
Matches: 241, Mismatches: 35, Indels: 6
0.85 0.12 0.02
Matches are distributed among these distances:
176 84 0.35
177 4 0.02
178 151 0.63
179 2 0.01
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (178 bp):
GAAATAAGGCTGGTGGCTAAAATCTGCTCCCCTGCTACCTTGAGAAGATAAGATTCGCCATTTTC
GATCTGCCCCACTGCTATTTCAAGGAGACAAAATCTACAATCTTCAGTCTGCTCCATTACTACCT
CAGAAAGATAAGACTACAATCTTCAACCTGCTCCCTTGCTACATCAAA
Found at i:6779874 original size:19 final size:20
Alignment explanation
Indices: 6779850--6779894 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
6779840 TTGGTGGACT
* *
6779850 TAATGCATATG-ATGTAATG
1 TAATGCAGATGCATGAAATG
6779869 TAATGCAGATGCATGAAATG
1 TAATGCAGATGCATGAAATG
6779889 -AATGCA
1 TAATGCA
6779895 AAAAAAGTGT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 16 0.70
20 7 0.30
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.29
Consensus pattern (20 bp):
TAATGCAGATGCATGAAATG
Found at i:6783470 original size:16 final size:16
Alignment explanation
Indices: 6783450--6783506 Score: 53
Period size: 16 Copynumber: 3.4 Consensus size: 16
6783440 ATATATAACC
6783450 AATAATAGAAAATAAA
1 AATAATAGAAAATAAA
* *
6783466 CATAA-AGCAAATTAAA
1 AATAATAG-AAAATAAA
*
6783482 AATAAATAGAATATAAA
1 AAT-AATAGAAAATAAA
6783499 TAATAATA
1 -AATAATA
6783507 AATAAATTTA
Statistics
Matches: 32, Mismatches: 5, Indels: 7
0.73 0.11 0.16
Matches are distributed among these distances:
15 2 0.06
16 13 0.41
17 12 0.38
18 5 0.16
ACGTcount: A:0.68, C:0.04, G:0.05, T:0.23
Consensus pattern (16 bp):
AATAATAGAAAATAAA
Found at i:6783869 original size:28 final size:29
Alignment explanation
Indices: 6783807--6783873 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 29
6783797 AAAAAATCTA
*
6783807 AAATAAATAATATATATATATAAAAGTTT
1 AAATAAATAATATATATATAAAAAAGTTT
*
6783836 AGAATAAATAATATATA-A-AAAATAATTTT
1 A-AATAAATAATATATATATAAAA-AAGTTT
6783865 AAATAAATA
1 AAATAAATA
6783874 GTAAAACAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
28 11 0.32
29 8 0.24
30 15 0.44
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (29 bp):
AAATAAATAATATATATATAAAAAAGTTT
Found at i:6783872 original size:14 final size:15
Alignment explanation
Indices: 6783807--6783873 Score: 52
Period size: 14 Copynumber: 4.6 Consensus size: 15
6783797 AAAAAATCTA
*
6783807 AAATAAATAATATAT
1 AAATAAATAATATTT
* *
6783822 ATATATAA-AA-GTTT
1 AAATA-AATAATATTT
*
6783836 AGAATAAATAATATAT
1 A-AATAAATAATATTT
6783852 AAA-AAATAAT-TTT
1 AAATAAATAATATTT
6783865 AAATAAATA
1 AAATAAATA
6783874 GTAAAACAAA
Statistics
Matches: 40, Mismatches: 7, Indels: 11
0.69 0.12 0.19
Matches are distributed among these distances:
13 5 0.12
14 17 0.43
15 13 0.32
16 5 0.12
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (15 bp):
AAATAAATAATATTT
Found at i:6783885 original size:23 final size:24
Alignment explanation
Indices: 6783840--6783889 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
6783830 AAGTTTAGAA
6783840 TAAATAATATATAAAAAATAATTT
1 TAAATAATATATAAAAAATAATTT
*
6783864 TAAATAA-ATAGTAAAACA-AATTT
1 TAAATAATATA-TAAAAAATAATTT
6783887 TAA
1 TAA
6783890 TAAGCATTAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
23 11 0.46
24 13 0.54
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (24 bp):
TAAATAATATATAAAAAATAATTT
Found at i:6783936 original size:13 final size:14
Alignment explanation
Indices: 6783911--6783944 Score: 61
Period size: 13 Copynumber: 2.5 Consensus size: 14
6783901 TTAAAACAAG
6783911 TTAAAATAAATAAT
1 TTAAAATAAATAAT
6783925 TTAAAA-AAATAAT
1 TTAAAATAAATAAT
6783938 TTAAAAT
1 TTAAAAT
6783945 GAATGGTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 13 0.68
14 6 0.32
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (14 bp):
TTAAAATAAATAAT
Found at i:6786315 original size:42 final size:43
Alignment explanation
Indices: 6786213--6786332 Score: 136
Period size: 43 Copynumber: 2.8 Consensus size: 43
6786203 ATCAAGTACA
* * *
6786213 ATGCCGATGTCCTAGACGTGGTCTTACATGTAATTCAATATCG
1 ATGCCGATGTCCTAGACATGGTCTTACACGTAAATCAATATCG
** * *
6786256 ATGCCTCTGTCGTAGACAAGGTCTTACACG-AAATCAGATAT-G
1 ATGCCGATGTCCTAGACATGGTCTTACACGTAAATCA-ATATCG
* *
6786298 ATGCCGATGTCCCAGACATGGTCTTATACGTAAAT
1 ATGCCGATGTCCTAGACATGGTCTTACACGTAAAT
6786333 TTCAATCGAG
Statistics
Matches: 62, Mismatches: 13, Indels: 4
0.78 0.16 0.05
Matches are distributed among these distances:
42 30 0.48
43 32 0.52
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (43 bp):
ATGCCGATGTCCTAGACATGGTCTTACACGTAAATCAATATCG
Found at i:6789053 original size:28 final size:28
Alignment explanation
Indices: 6789013--6789076 Score: 110
Period size: 28 Copynumber: 2.3 Consensus size: 28
6789003 CAAGGGGAGA
* *
6789013 GGGGATCACCTTGACGGAGTCCCCTCTT
1 GGGGATAACCTTGACGGAGTCCCCTCTC
6789041 GGGGATAACCTTGACGGAGTCCCCTCTC
1 GGGGATAACCTTGACGGAGTCCCCTCTC
6789069 GGGGATAA
1 GGGGATAA
6789077 AATATTCGAT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (28 bp):
GGGGATAACCTTGACGGAGTCCCCTCTC
Found at i:6797895 original size:19 final size:18
Alignment explanation
Indices: 6797864--6797916 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
6797854 GTCATACCCA
*
6797864 ATATATGTTTTTATTTAT
1 ATATATATTTTTATTTAT
*
6797882 ATATATACTTTTTATTTTT
1 ATATATA-TTTTTATTTAT
* *
6797901 ATTTTTATTTTTATTT
1 ATATATATTTTTATTT
6797917 TTATTTTTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
18 15 0.50
19 15 0.50
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.72
Consensus pattern (18 bp):
ATATATATTTTTATTTAT
Found at i:6797899 original size:6 final size:6
Alignment explanation
Indices: 6797871--6797938 Score: 73
Period size: 6 Copynumber: 10.8 Consensus size: 6
6797861 CCAATATATG
* * *
6797871 TTTTTA TTTATA TATATA CTTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
1 TTTTTA TTTTTA TTTTTA -TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
*
6797920 TTTTTTTG TTTTTA TTTTT
1 --TTTTTA TTTTTA TTTTT
6797939 TTCAAACGTA
Statistics
Matches: 53, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
6 44 0.83
7 4 0.08
8 5 0.09
ACGTcount: A:0.18, C:0.01, G:0.01, T:0.79
Consensus pattern (6 bp):
TTTTTA
Found at i:6797918 original size:19 final size:18
Alignment explanation
Indices: 6797871--6797938 Score: 73
Period size: 20 Copynumber: 3.6 Consensus size: 18
6797861 CCAATATATG
* * *
6797871 TTTTTATTTATATATATA
1 TTTTTATTTTTATTTTTA
6797889 CTTTTTATTTTTATTTTTA
1 -TTTTTATTTTTATTTTTA
*
6797908 TTTTTATTTTTATTTTTTTG
1 TTTTTATTTTTA--TTTTTA
6797928 TTTTTATTTTT
1 TTTTTATTTTT
6797939 TTCAAACGTA
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
18 12 0.28
19 15 0.35
20 16 0.37
ACGTcount: A:0.18, C:0.01, G:0.01, T:0.79
Consensus pattern (18 bp):
TTTTTATTTTTATTTTTA
Found at i:6797931 original size:14 final size:14
Alignment explanation
Indices: 6797896--6797940 Score: 67
Period size: 14 Copynumber: 3.4 Consensus size: 14
6797886 ATACTTTTTA
6797896 TTTTTATTTTTA--
1 TTTTTATTTTTATT
6797908 TTTTTATTTTTATT
1 TTTTTATTTTTATT
*
6797922 TTTTTGTTTTTATT
1 TTTTTATTTTTATT
6797936 TTTTT
1 TTTTT
6797941 CAAACGTAGT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
12 12 0.40
14 18 0.60
ACGTcount: A:0.11, C:0.00, G:0.02, T:0.87
Consensus pattern (14 bp):
TTTTTATTTTTATT
Found at i:6800444 original size:18 final size:18
Alignment explanation
Indices: 6800423--6800465 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
6800413 ATAATCAATT
* *
6800423 ATACATATGTATCTATAG
1 ATACATATATATCCATAG
*
6800441 ATACATATATATCCATAT
1 ATACATATATATCCATAG
6800459 ATACATA
1 ATACATA
6800466 CTCATGAATC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.44, C:0.14, G:0.05, T:0.37
Consensus pattern (18 bp):
ATACATATATATCCATAG
Found at i:6800750 original size:41 final size:41
Alignment explanation
Indices: 6800687--6800871 Score: 223
Period size: 42 Copynumber: 4.5 Consensus size: 41
6800677 AAAAATTTGT
* * *
6800687 TAGGC-ATAAAGCCT-AGTATAATACACCAGTACAGAGCCTGC
1 TAGGCAAT-AAGCCTGA-TATAATACACCGGCACAAAGCCTGC
* * *
6800728 TAGGCAATAAACCTGAGT-TAATACACCGGCATAAAGTCTGC
1 TAGGCAATAAGCCTGA-TATAATACACCGGCACAAAGCCTGC
* *
6800769 TAGGCATTAAGCCTGATATCATACACCGGCAACAAAGCCTGC
1 TAGGCAATAAGCCTGATATAATACACCGGC-ACAAAGCCTGC
*
6800811 TAGGCAATAAGCCTGATATCATACACCGGCATCAAAGCCTGC
1 TAGGCAATAAGCCTGATATAATACACCGGCA-CAAAGCCTGC
6800853 TAGGCAATAAGCCTGATAT
1 TAGGCAATAAGCCTGATAT
6800872 TATATCACTA
Statistics
Matches: 127, Mismatches: 12, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
40 1 0.01
41 54 0.43
42 72 0.57
ACGTcount: A:0.35, C:0.25, G:0.19, T:0.21
Consensus pattern (41 bp):
TAGGCAATAAGCCTGATATAATACACCGGCACAAAGCCTGC
Found at i:6800823 original size:42 final size:42
Alignment explanation
Indices: 6800721--6800871 Score: 225
Period size: 42 Copynumber: 3.6 Consensus size: 42
6800711 ACCAGTACAG
* * *
6800721 AGCCTGCTAGGCAATAAACCTGAGT-TAATACACCGGC-ATAA
1 AGCCTGCTAGGCAATAAGCCTGA-TATCATACACCGGCAACAA
* *
6800762 AGTCTGCTAGGCATTAAGCCTGATATCATACACCGGCAACAA
1 AGCCTGCTAGGCAATAAGCCTGATATCATACACCGGCAACAA
*
6800804 AGCCTGCTAGGCAATAAGCCTGATATCATACACCGGCATCAA
1 AGCCTGCTAGGCAATAAGCCTGATATCATACACCGGCAACAA
6800846 AGCCTGCTAGGCAATAAGCCTGATAT
1 AGCCTGCTAGGCAATAAGCCTGATAT
6800872 TATATCACTA
Statistics
Matches: 100, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
40 1 0.01
41 31 0.31
42 68 0.68
ACGTcount: A:0.34, C:0.26, G:0.20, T:0.21
Consensus pattern (42 bp):
AGCCTGCTAGGCAATAAGCCTGATATCATACACCGGCAACAA
Found at i:6800826 original size:83 final size:83
Alignment explanation
Indices: 6800687--6800871 Score: 241
Period size: 83 Copynumber: 2.2 Consensus size: 83
6800677 AAAAATTTGT
* * *
6800687 TAGGCATAAAGCCT-AGTATAATACACCAGTACAGAGCCTGCTAGGCAATAAACCTGAGT-TAAT
1 TAGGCATTAAGCCTGA-TATAATACACCAGAACAAAGCCTGCTAGGCAATAAACCTGA-TATAAT
*
6800750 ACACCGGCAT-AAAGTCTGC
64 ACACCGGCATCAAAGCCTGC
* * * *
6800769 TAGGCATTAAGCCTGATATCATACACCGGCAACAAAGCCTGCTAGGCAATAAGCCTGATATCATA
1 TAGGCATTAAGCCTGATATAATACACCAG-AACAAAGCCTGCTAGGCAATAAACCTGATATAATA
6800834 CACCGGCATCAAAGCCTGC
65 CACCGGCATCAAAGCCTGC
*
6800853 TAGGCAATAAGCCTGATAT
1 TAGGCATTAAGCCTGATAT
6800872 TATATCACTA
Statistics
Matches: 90, Mismatches: 9, Indels: 6
0.86 0.09 0.06
Matches are distributed among these distances:
82 25 0.28
83 39 0.43
84 26 0.29
ACGTcount: A:0.35, C:0.25, G:0.19, T:0.21
Consensus pattern (83 bp):
TAGGCATTAAGCCTGATATAATACACCAGAACAAAGCCTGCTAGGCAATAAACCTGATATAATAC
ACCGGCATCAAAGCCTGC
Found at i:6809081 original size:20 final size:20
Alignment explanation
Indices: 6809040--6809082 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
6809030 ATTAACTTTA
* *
6809040 TTAAATAATAAATAATATTT
1 TTAAATAACAAATAATAATT
*
6809060 TTAAATAACAAATATTAATT
1 TTAAATAACAAATAATAATT
6809080 TTA
1 TTA
6809083 TCAAAATTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (20 bp):
TTAAATAACAAATAATAATT
Found at i:6812475 original size:18 final size:18
Alignment explanation
Indices: 6812440--6812474 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
6812430 TTTTATTTTT
6812440 TATATAAATAAATTAAAA
1 TATATAAATAAATTAAAA
*
6812458 TATAT-AATACATTAAAA
1 TATATAAATAAATTAAAA
6812475 ACATTAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (18 bp):
TATATAAATAAATTAAAA
Found at i:6826069 original size:18 final size:19
Alignment explanation
Indices: 6826032--6826068 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
6826022 GGGTCATTAT
6826032 TGGCTTGTTACGTAAAAAA
1 TGGCTTGTTACGTAAAAAA
6826051 TGGCTTGTTACGTAAAAA
1 TGGCTTGTTACGTAAAAA
6826069 TAACTTGCAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.35, C:0.11, G:0.22, T:0.32
Consensus pattern (19 bp):
TGGCTTGTTACGTAAAAAA
Found at i:6826075 original size:18 final size:19
Alignment explanation
Indices: 6826035--6826075 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
6826025 TCATTATTGG
**
6826035 CTTGTTACGTAAAAAATGG
1 CTTGTTACGTAAAAAATAA
6826054 CTTGTTACGT-AAAAATAA
1 CTTGTTACGTAAAAAATAA
6826072 CTTG
1 CTTG
6826076 CAGTCCATTG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 10 0.50
19 10 0.50
ACGTcount: A:0.37, C:0.12, G:0.17, T:0.34
Consensus pattern (19 bp):
CTTGTTACGTAAAAAATAA
Found at i:6826963 original size:24 final size:24
Alignment explanation
Indices: 6826936--6827015 Score: 78
Period size: 24 Copynumber: 3.3 Consensus size: 24
6826926 ATATGTAGAA
6826936 GACAATTTCCATATTTAAGGTACT
1 GACAATTTCCATATTTAAGGTACT
* *
6826960 GACAA-TT---TATTGAATGGTTTATAT
1 GACAATTTCCATATTTAA-GG--TA-CT
6826984 GACAATTTCCATATTTAAGGTACT
1 GACAATTTCCATATTTAAGGTACT
6827008 GACAATTT
1 GACAATTT
6827016 ATTGAATGGT
Statistics
Matches: 44, Mismatches: 4, Indels: 16
0.69 0.06 0.25
Matches are distributed among these distances:
20 6 0.14
21 2 0.05
23 4 0.09
24 20 0.45
25 4 0.09
27 2 0.05
28 6 0.14
ACGTcount: A:0.34, C:0.12, G:0.14, T:0.40
Consensus pattern (24 bp):
GACAATTTCCATATTTAAGGTACT
Found at i:6826992 original size:48 final size:48
Alignment explanation
Indices: 6826936--6827032 Score: 194
Period size: 48 Copynumber: 2.0 Consensus size: 48
6826926 ATATGTAGAA
6826936 GACAATTTCCATATTTAAGGTACTGACAATTTATTGAATGGTTTATAT
1 GACAATTTCCATATTTAAGGTACTGACAATTTATTGAATGGTTTATAT
6826984 GACAATTTCCATATTTAAGGTACTGACAATTTATTGAATGGTTTATAT
1 GACAATTTCCATATTTAAGGTACTGACAATTTATTGAATGGTTTATAT
6827032 G
1 G
6827033 GGCTATGTTG
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.33, C:0.10, G:0.15, T:0.41
Consensus pattern (48 bp):
GACAATTTCCATATTTAAGGTACTGACAATTTATTGAATGGTTTATAT
Found at i:6829155 original size:21 final size:21
Alignment explanation
Indices: 6829123--6829200 Score: 93
Period size: 21 Copynumber: 3.7 Consensus size: 21
6829113 ACAGAAGTTC
*
6829123 GAAAGCTGAACAGAAGCTCGT
1 GAAAGCTTAACAGAAGCTCGT
* * *
6829144 GAGAGCTAAACAGAAGCTCAT
1 GAAAGCTTAACAGAAGCTCGT
* *
6829165 GATAGCTTAACAGAAGTTCGT
1 GAAAGCTTAACAGAAGCTCGT
*
6829186 AAAAGCTTAACAGAA
1 GAAAGCTTAACAGAA
6829201 AGTAAAACAC
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 48 1.00
ACGTcount: A:0.42, C:0.17, G:0.23, T:0.18
Consensus pattern (21 bp):
GAAAGCTTAACAGAAGCTCGT
Found at i:6833522 original size:40 final size:39
Alignment explanation
Indices: 6833457--6833569 Score: 109
Period size: 40 Copynumber: 2.8 Consensus size: 39
6833447 ACGATGTTTG
* **
6833457 GCACTTAGTGTGCGTTTTGAGATAGCTTCGGTTATATACA
1 GCACTAAGTGTGCGAATTGAGATAGCTTCGGTT-TATACA
* * * ***
6833497 GCACTCAGTGTGCGAATTGAAATAGCTTTGGTTTATGTG
1 GCACTAAGTGTGCGAATTGAGATAGCTTCGGTTTATACA
**
6833536 GCACTAAGTGTGCGATACCGAGATAGCTTCGGTT
1 GCACTAAGTGTGCGA-ATTGAGATAGCTTCGGTT
6833570 CAATGTGATG
Statistics
Matches: 59, Mismatches: 13, Indels: 2
0.80 0.18 0.03
Matches are distributed among these distances:
39 17 0.29
40 42 0.71
ACGTcount: A:0.23, C:0.16, G:0.27, T:0.34
Consensus pattern (39 bp):
GCACTAAGTGTGCGAATTGAGATAGCTTCGGTTTATACA
Found at i:6833633 original size:44 final size:43
Alignment explanation
Indices: 6833536--6833635 Score: 103
Period size: 44 Copynumber: 2.3 Consensus size: 43
6833526 GGTTTATGTG
**
6833536 GCACTAAGTGTGCGATACCGAGATAGCTTCGGTTCAATGTGAT
1 GCACTAAGTGTGCGATACCGAGATAGCTTCGGTAAAATGTGAT
* * ** *
6833579 GTCACCAAGTGTGCGATATCGTTATAGCTTCGGCTAAACAT-TTAT
1 G-CACTAAGTGTGCGATACCGAGATAGCTTCGG-TAAA-ATGTGAT
6833624 GCACTAAGTGTG
1 GCACTAAGTGTG
6833636 TGAGTTCTTA
Statistics
Matches: 46, Mismatches: 8, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
43 1 0.02
44 37 0.80
45 6 0.13
46 2 0.04
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (43 bp):
GCACTAAGTGTGCGATACCGAGATAGCTTCGGTAAAATGTGAT
Found at i:6838089 original size:25 final size:25
Alignment explanation
Indices: 6838061--6838109 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
6838051 TGATTTTAGT
*
6838061 ATATGAAATGTGATGCAGAATGATA
1 ATATGAAATGTGATACAGAATGATA
6838086 ATATGAAATGTGATACAGAATGAT
1 ATATGAAATGTGATACAGAATGAT
6838110 CTATTTGATG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.45, C:0.04, G:0.22, T:0.29
Consensus pattern (25 bp):
ATATGAAATGTGATACAGAATGATA
Found at i:6841180 original size:125 final size:124
Alignment explanation
Indices: 6840906--6841266 Score: 392
Period size: 125 Copynumber: 2.9 Consensus size: 124
6840896 TAGAAAAAGT
* * * * ** *
6840906 TTTTTTCATTAATTTTGCTGATAGTGCACCCTGCTT-AATGCGTTTTTGCCACTATTTGTTCAAA
1 TTTTTTCAATAATTTTGCTAACAGTGCATCCTGCTTGAA-GCGTTTTTAACACTATTTGTTCAGA
* * * *
6840970 ATCAT-T-TTCTCAAAATTATTTTTTCAGGAACTATTATAGAAAAAAAAGGTCCATGTGGGAGC
65 A-C-TGTCTTCTCAAAATTA-TTTTTCAAGAACTACTGTAG-AAAAAAAGGTCCACGTGGGAGC
* * * *
6841032 TTTTCTCAATATTTTTGCTAACAGTGCATCATGCTTGAAGCGTTTTTAACACTCTTTGTTCAGAA
1 TTTTTTCAATAATTTTGCTAACAGTGCATCCTGCTTGAAGCGTTTTTAACACTATTTGTTCAGAA
* * * *
6841097 CTGTCTTTTCAAAACTATTTTTCAAGAACTACTGTAGAAAAAGAGCGTTCACGTGGGAGC
66 CTGTCTTCTCAAAATTATTTTTCAAGAACTACTGTAGAAAAAAAG-GTCCACGTGGGAGC
* * *
6841157 TTTTTTCAGTAATTTTGCTAACAGTGCATCCTACTTGAAGCGTTTTTAACATTATCTT-TTCAGA
1 TTTTTTCAATAATTTTGCTAACAGTGCATCCTGCTTGAAGCGTTTTTAACACTAT-TTGTTCAGA
6841221 A-TCGTCTTCTCAAAATTAATTTTTCTAA-AACTACTGTAGAAAAAAA
65 ACT-GTCTTCTCAAAATT-ATTTTTC-AAGAACTACTGTAGAAAAAAA
6841267 AAACAAAATC
Statistics
Matches: 198, Mismatches: 29, Indels: 16
0.81 0.12 0.07
Matches are distributed among these distances:
124 9 0.05
125 98 0.49
126 87 0.44
127 4 0.02
ACGTcount: A:0.30, C:0.17, G:0.14, T:0.39
Consensus pattern (124 bp):
TTTTTTCAATAATTTTGCTAACAGTGCATCCTGCTTGAAGCGTTTTTAACACTATTTGTTCAGAA
CTGTCTTCTCAAAATTATTTTTCAAGAACTACTGTAGAAAAAAAGGTCCACGTGGGAGC
Found at i:6841389 original size:34 final size:33
Alignment explanation
Indices: 6841341--6841446 Score: 131
Period size: 34 Copynumber: 3.1 Consensus size: 33
6841331 TAACAAAACT
*
6841341 AACCTTAATTTAATTAATTTTCTTAAAAACTCTA
1 AACCCTAATTTAATTAATTTT-TTAAAAACTCTA
* * *
6841375 AACCCTAATTTAATTTATTTATTTAAAACCCCTA
1 AACCCTAATTTAATTAATTT-TTTAAAAACTCTA
* *
6841409 AAACCTAATTTAATTACTTTTTTAAAAAACTCTA
1 AACCCTAATTTAATTAATTTTTT-AAAAACTCTA
6841443 AACC
1 AACC
6841447 TTGATTTATT
Statistics
Matches: 60, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
33 3 0.05
34 56 0.93
35 1 0.02
ACGTcount: A:0.42, C:0.18, G:0.00, T:0.41
Consensus pattern (33 bp):
AACCCTAATTTAATTAATTTTTTAAAAACTCTA
Found at i:6841508 original size:34 final size:34
Alignment explanation
Indices: 6841470--6841555 Score: 120
Period size: 34 Copynumber: 2.6 Consensus size: 34
6841460 TAAAATTCTT
* *
6841470 AAACCCTACACCCTACACCTAAATTATTTTAACA
1 AAACCCTAAACCCTAAACCTAAATTATTTTAACA
*
6841504 AAACCCTAAACTCTAAACCTAAATTATTTTAACA
1 AAACCCTAAACCCTAAACCTAAATTATTTTAACA
* *
6841538 AAATCAT-AACCCTAAACC
1 AAACCCTAAACCCTAAACC
6841556 AAAAAACCCT
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
33 10 0.22
34 36 0.78
ACGTcount: A:0.45, C:0.29, G:0.00, T:0.26
Consensus pattern (34 bp):
AAACCCTAAACCCTAAACCTAAATTATTTTAACA
Found at i:6852448 original size:19 final size:19
Alignment explanation
Indices: 6852402--6852449 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 19
6852392 GTATATATTT
6852402 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
* *
6852420 TAAATCTTATTTGGGTAGA
1 TAAATTTTATTTAGGTAGA
*
6852439 TAAGTTTTATT
1 TAAATTTTATT
6852450 CATATTCTAG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
18 4 0.16
19 21 0.84
ACGTcount: A:0.33, C:0.02, G:0.17, T:0.48
Consensus pattern (19 bp):
TAAATTTTATTTAGGTAGA
Found at i:6852524 original size:42 final size:42
Alignment explanation
Indices: 6852466--6852554 Score: 151
Period size: 42 Copynumber: 2.1 Consensus size: 42
6852456 CTAGGAATAT
*
6852466 TTTTATTTTATATTTTAGTAGTTTATTAGAAGAAGGAAACTA
1 TTTTCTTTTATATTTTAGTAGTTTATTAGAAGAAGGAAACTA
* *
6852508 TTTTCTTTTATATTTTAGTAGTTTATTAGAATAAGGGAACTA
1 TTTTCTTTTATATTTTAGTAGTTTATTAGAAGAAGGAAACTA
6852550 TTTTC
1 TTTTC
6852555 CCAATTAGGA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.31, C:0.04, G:0.13, T:0.51
Consensus pattern (42 bp):
TTTTCTTTTATATTTTAGTAGTTTATTAGAAGAAGGAAACTA
Found at i:6856427 original size:42 final size:42
Alignment explanation
Indices: 6856368--6856455 Score: 149
Period size: 42 Copynumber: 2.1 Consensus size: 42
6856358 CTATGAATAT
*
6856368 TTTTATTTTATCTTTTAGTAGTTTATTAGAAGAAGGGAACTA
1 TTTTATTTTATATTTTAGTAGTTTATTAGAAGAAGGGAACTA
* *
6856410 TTTTCTTTTATATTTTAGTAGTTTATTAGAATAAGGGAACTA
1 TTTTATTTTATATTTTAGTAGTTTATTAGAAGAAGGGAACTA
6856452 TTTT
1 TTTT
6856456 TCCAATTAGG
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.30, C:0.05, G:0.15, T:0.51
Consensus pattern (42 bp):
TTTTATTTTATATTTTAGTAGTTTATTAGAAGAAGGGAACTA
Found at i:6860346 original size:43 final size:43
Alignment explanation
Indices: 6860292--6860377 Score: 172
Period size: 43 Copynumber: 2.0 Consensus size: 43
6860282 CAGATGGAAG
6860292 AAAGAATGGTTTACAATAACAAATTTTGTATTTGTCATGGAGA
1 AAAGAATGGTTTACAATAACAAATTTTGTATTTGTCATGGAGA
6860335 AAAGAATGGTTTACAATAACAAATTTTGTATTTGTCATGGAGA
1 AAAGAATGGTTTACAATAACAAATTTTGTATTTGTCATGGAGA
6860378 CTTACTGCAA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.40, C:0.07, G:0.19, T:0.35
Consensus pattern (43 bp):
AAAGAATGGTTTACAATAACAAATTTTGTATTTGTCATGGAGA
Found at i:6861967 original size:13 final size:13
Alignment explanation
Indices: 6861949--6861973 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6861939 TTTTTCTCTC
6861949 TTTTTTATTTTTA
1 TTTTTTATTTTTA
6861962 TTTTTTATTTTT
1 TTTTTTATTTTT
6861974 TGGGGTTATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (13 bp):
TTTTTTATTTTTA
Found at i:6862533 original size:6 final size:5
Alignment explanation
Indices: 6862500--6862531 Score: 55
Period size: 5 Copynumber: 6.2 Consensus size: 5
6862490 ATATATAGAT
6862500 TTTTA TTTTA TTTTA TTTTA TTTTA TCTTTA T
1 TTTTA TTTTA TTTTA TTTTA TTTTA T-TTTA T
6862532 CTATATCTAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 21 0.81
6 5 0.19
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.78
Consensus pattern (5 bp):
TTTTA
Found at i:6865334 original size:26 final size:26
Alignment explanation
Indices: 6865305--6865364 Score: 66
Period size: 28 Copynumber: 2.2 Consensus size: 26
6865295 TCCCTTTGAA
* * *
6865305 TCATTCGATATTTTGCACACTAAGTG
1 TCATTCAATATCTCGCACACTAAGTG
6865331 TCATTCTCAATATCTCGCACACTAAGTG
1 TCA-T-TCAATATCTCGCACACTAAGTG
*
6865359 CCATTC
1 TCATTC
6865365 TCAATATTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
26 5 0.18
27 2 0.07
28 21 0.75
ACGTcount: A:0.27, C:0.27, G:0.12, T:0.35
Consensus pattern (26 bp):
TCATTCAATATCTCGCACACTAAGTG
Found at i:6865350 original size:28 final size:28
Alignment explanation
Indices: 6865319--6865390 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
6865309 TCGATATTTT
*
6865319 GCACACTAAGTGTCATTCTCAATATCTC
1 GCACACTAAGTGCCATTCTCAATATCTC
*
6865347 GCACACTAAGTGCCATTCTCAATATTTC
1 GCACACTAAGTGCCATTCTCAATATCTC
* * *
6865375 GTACACTGAGTACCAT
1 GCACACTAAGTGCCAT
6865391 ATTTGATTGC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.29, C:0.28, G:0.12, T:0.31
Consensus pattern (28 bp):
GCACACTAAGTGCCATTCTCAATATCTC
Found at i:6869477 original size:24 final size:24
Alignment explanation
Indices: 6869445--6869498 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
6869435 CACATCACAC
6869445 ATACTATTATGAACGAACAGTTCA
1 ATACTATTATGAACGAACAGTTCA
*
6869469 ATACTATTATGAACGAATAGTTCA
1 ATACTATTATGAACGAACAGTTCA
*
6869493 TTACTA
1 ATACTA
6869499 ATTCTGCATT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.41, C:0.15, G:0.11, T:0.33
Consensus pattern (24 bp):
ATACTATTATGAACGAACAGTTCA
Found at i:6870417 original size:57 final size:57
Alignment explanation
Indices: 6870325--6870564 Score: 371
Period size: 57 Copynumber: 4.2 Consensus size: 57
6870315 GATCTCATTT
* * *
6870325 CACACACTTAGTGCCCCAACAACCGATCTTGCACACACAGTGCTTGGTTACGGAACTCG
1 CACACAC--AGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCG
*
6870384 CACACACAGTGCCTCAACAACCGATCTCACACACACAGTGCTCGGTTACGGAACTCG
1 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCG
6870441 CACACAC--TGCCTCAACAA-CGATCTCGCACACACAGTGCTCGGTTACGGAACTCG
1 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCG
* * *
6870495 CACACACAGTGCCTCAACAACTGATCTCGCACACACAGTGCT-AGTTACGGAACTCA
1 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCG
6870551 CACACACAGTGCCT
1 CACACACAGTGCCT
6870565 ACGTTCACTT
Statistics
Matches: 170, Mismatches: 8, Indels: 9
0.91 0.04 0.05
Matches are distributed among these distances:
54 42 0.25
55 11 0.06
56 37 0.22
57 73 0.43
59 7 0.04
ACGTcount: A:0.29, C:0.36, G:0.17, T:0.17
Consensus pattern (57 bp):
CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCG
Found at i:6870472 original size:111 final size:111
Alignment explanation
Indices: 6870336--6870557 Score: 365
Period size: 111 Copynumber: 2.0 Consensus size: 111
6870326 ACACACTTAG
* *
6870336 TGCCCCAACAACCGATCTTGCACACACAGTGCTTGGTTACGGAACTCGCACACACAGTGCCTCAA
1 TGCCCCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCGCACACACAGTGCCTCAA
* *
6870401 CAACCGATCTCACACACACAGTGCTCGGTTACGGAACTCGCACACAC
66 CAACCGATCTCACACACACAGTGCT-AGTTACGGAACTCACACACAC
*
6870448 TGCCTCAACAA-CGATCTCGCACACACAGTGCTCGGTTACGGAACTCGCACACACAGTGCCTCAA
1 TGCCCCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCGCACACACAGTGCCTCAA
* *
6870512 CAACTGATCTCGCACACACAGTGCTAGTTACGGAACTCACACACAC
66 CAACCGATCTCACACACACAGTGCTAGTTACGGAACTCACACACAC
6870558 AGTGCCTACG
Statistics
Matches: 103, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
110 19 0.18
111 74 0.72
112 10 0.10
ACGTcount: A:0.29, C:0.36, G:0.18, T:0.17
Consensus pattern (111 bp):
TGCCCCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCGCACACACAGTGCCTCAA
CAACCGATCTCACACACACAGTGCTAGTTACGGAACTCACACACAC
Found at i:6870907 original size:20 final size:20
Alignment explanation
Indices: 6870882--6870922 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
6870872 TCACATACGC
6870882 CATGGTAGTCCTAAAACCGA
1 CATGGTAGTCCTAAAACCGA
*
6870902 CATGGTAGTCCTAGAACCGA
1 CATGGTAGTCCTAAAACCGA
6870922 C
1 C
6870923 TAAACTATGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.32, C:0.27, G:0.22, T:0.20
Consensus pattern (20 bp):
CATGGTAGTCCTAAAACCGA
Found at i:6872554 original size:26 final size:26
Alignment explanation
Indices: 6872525--6872584 Score: 75
Period size: 28 Copynumber: 2.2 Consensus size: 26
6872515 TTCCTTTGAA
* * *
6872525 TCATTCGATATTTTGCACACTAAGTG
1 TCATTCAATATCTCGCACACTAAGTG
6872551 TCATTCTCAATATCTCGCACACTAAGTG
1 TCA-T-TCAATATCTCGCACACTAAGTG
6872579 TCATTC
1 TCATTC
6872585 TCAATATTTC
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
26 5 0.17
27 2 0.07
28 22 0.76
ACGTcount: A:0.27, C:0.25, G:0.12, T:0.37
Consensus pattern (26 bp):
TCATTCAATATCTCGCACACTAAGTG
Found at i:6872563 original size:28 final size:28
Alignment explanation
Indices: 6872532--6872601 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
6872522 GAATCATTCG
*
6872532 ATATTTTGCACACTAAGTGTCATTCTCA
1 ATATTTCGCACACTAAGTGTCATTCTCA
*
6872560 ATATCTCGCACACTAAGTGTCATTCTCA
1 ATATTTCGCACACTAAGTGTCATTCTCA
*
6872588 ATATTTCGTACACT
1 ATATTTCGCACACT
6872602 GAGTACCATA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.29, C:0.24, G:0.10, T:0.37
Consensus pattern (28 bp):
ATATTTCGCACACTAAGTGTCATTCTCA
Found at i:6879646 original size:26 final size:26
Alignment explanation
Indices: 6879581--6879639 Score: 82
Period size: 26 Copynumber: 2.2 Consensus size: 26
6879571 ATTATCAAGT
* *
6879581 AGCTCACAAAGAGCCTTAAATCGGGA
1 AGCTCACGAAGAGCCATAAATCGGGA
*
6879607 AGGTCACGAAGAGCCATATAATCGGGA
1 AGCTCACGAAGAGCCATA-AATCGGGA
6879634 AGCTCA
1 AGCTCA
6879640 TAAGAGCTAA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 15 0.54
27 13 0.46
ACGTcount: A:0.37, C:0.22, G:0.25, T:0.15
Consensus pattern (26 bp):
AGCTCACGAAGAGCCATAAATCGGGA
Found at i:6887746 original size:24 final size:25
Alignment explanation
Indices: 6887717--6887771 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 25
6887707 TGCATACTTA
* * *
6887717 ACAATTACACAAATTACATACATAT
1 ACAATTAAACAAATCACATAAATAT
*
6887742 A-AATTAAACATATCACATAAATAT
1 ACAATTAAACAAATCACATAAATAT
6887766 ACAATT
1 ACAATT
6887772 TAGTTACACG
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
24 20 0.80
25 5 0.20
ACGTcount: A:0.55, C:0.16, G:0.00, T:0.29
Consensus pattern (25 bp):
ACAATTAAACAAATCACATAAATAT
Found at i:6892112 original size:72 final size:71
Alignment explanation
Indices: 6892029--6892171 Score: 223
Period size: 71 Copynumber: 2.0 Consensus size: 71
6892019 TATGTTGTAA
* * *
6892029 TGTTAAGGTAAGTTAAGTAAATTTCATATGGACTTACTAAGCATTCAATATGTTTACTCTGTTGC
1 TGTTAAGGTAAGTTAAGTAAATTTCATAT-AAATTACTAAGCATTCAATATGTTTACTCCGTTGC
6892094 CTCCCTT
65 CTCCCTT
* * *
6892101 TGTTAAGGTAAGTTAAGTAAATTTCATATAAATTACTTAGCCTTCAGTATGTTTACTCCGTTGCC
1 TGTTAAGGTAAGTTAAGTAAATTTCATATAAATTACTAAGCATTCAATATGTTTACTCCGTTGCC
6892166 TCCCTT
66 TCCCTT
6892172 AGTTCCCTTG
Statistics
Matches: 65, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
71 36 0.55
72 29 0.45
ACGTcount: A:0.27, C:0.17, G:0.15, T:0.41
Consensus pattern (71 bp):
TGTTAAGGTAAGTTAAGTAAATTTCATATAAATTACTAAGCATTCAATATGTTTACTCCGTTGCC
TCCCTT
Found at i:6894695 original size:11 final size:11
Alignment explanation
Indices: 6894679--6894705 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
6894669 TAACCTCTAC
6894679 AAAAAAATATT
1 AAAAAAATATT
6894690 AAAAAAATATT
1 AAAAAAATATT
6894701 AAAAA
1 AAAAA
6894706 TAATTAATTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (11 bp):
AAAAAAATATT
Found at i:6895559 original size:19 final size:21
Alignment explanation
Indices: 6895535--6895579 Score: 67
Period size: 19 Copynumber: 2.2 Consensus size: 21
6895525 TTTTTATAAT
6895535 TTTTAAAAGATT-AAAT-TAA
1 TTTTAAAAGATTAAAATGTAA
*
6895554 TTTTAAAAGGTTAAAATGTAA
1 TTTTAAAAGATTAAAATGTAA
6895575 TTTTA
1 TTTTA
6895580 TTTTTATAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 11 0.48
20 4 0.17
21 8 0.35
ACGTcount: A:0.47, C:0.00, G:0.09, T:0.44
Consensus pattern (21 bp):
TTTTAAAAGATTAAAATGTAA
Found at i:6904577 original size:9 final size:9
Alignment explanation
Indices: 6904550--6904586 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
6904540 TGAGTTTTCG
6904550 AATTCGAAT
1 AATTCGAAT
* *
6904559 AACTCAAAT
1 AATTCGAAT
6904568 AATTCGAAT
1 AATTCGAAT
6904577 AATTCGAAT
1 AATTCGAAT
6904586 A
1 A
6904587 TTAAACTATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.49, C:0.14, G:0.08, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:6905111 original size:17 final size:17
Alignment explanation
Indices: 6905057--6905137 Score: 69
Period size: 17 Copynumber: 4.6 Consensus size: 17
6905047 TTATATCTAA
6905057 TATTTATATTATTAAAT
1 TATTTATATTATTAAAT
* *
6905074 TAAATTTCACATT-TTATAT
1 T--ATTT-ATATTATTAAAT
6905093 TATTTATATTATTAAAT
1 TATTTATATTATTAAAT
*
6905110 TATTTAGTCA-TATTGAA-
1 TATTTA-T-ATTATTAAAT
6905127 TATTTATATTA
1 TATTTATATTA
6905138 AAATTAAATT
Statistics
Matches: 52, Mismatches: 5, Indels: 15
0.72 0.07 0.21
Matches are distributed among these distances:
15 1 0.02
16 7 0.13
17 22 0.42
18 7 0.13
19 11 0.21
20 4 0.08
ACGTcount: A:0.38, C:0.04, G:0.02, T:0.56
Consensus pattern (17 bp):
TATTTATATTATTAAAT
Found at i:6905413 original size:19 final size:20
Alignment explanation
Indices: 6905376--6905414 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
6905366 AAGTTAATAA
*
6905376 AAATTTTGATTAAGGTGGAT
1 AAATTTTGATTAAGATGGAT
*
6905396 AAATTTT-ATTATGATGGAT
1 AAATTTTGATTAAGATGGAT
6905415 GACAGTTATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.36, C:0.00, G:0.21, T:0.44
Consensus pattern (20 bp):
AAATTTTGATTAAGATGGAT
Found at i:6911771 original size:38 final size:38
Alignment explanation
Indices: 6911729--6911808 Score: 160
Period size: 38 Copynumber: 2.1 Consensus size: 38
6911719 TTCGTTTATG
6911729 TTTGTTTATTAAGCTAAATAAATTAACATGAATAAAAT
1 TTTGTTTATTAAGCTAAATAAATTAACATGAATAAAAT
6911767 TTTGTTTATTAAGCTAAATAAATTAACATGAATAAAAT
1 TTTGTTTATTAAGCTAAATAAATTAACATGAATAAAAT
6911805 TTTG
1 TTTG
6911809 AGGCTTCGAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 42 1.00
ACGTcount: A:0.45, C:0.05, G:0.09, T:0.41
Consensus pattern (38 bp):
TTTGTTTATTAAGCTAAATAAATTAACATGAATAAAAT
Found at i:6912021 original size:2 final size:2
Alignment explanation
Indices: 6912014--6912055 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
6912004 TTTTAAAATA
6912014 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6912056 GCATATGCTT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6913636 original size:17 final size:18
Alignment explanation
Indices: 6913611--6913648 Score: 53
Period size: 16 Copynumber: 2.2 Consensus size: 18
6913601 TTAAATATTA
6913611 TTTAGAATTTTAAAAT-AT
1 TTTAGAA-TTTAAAATAAT
6913629 TTTA-AATTTAAAATAAT
1 TTTAGAATTTAAAATAAT
6913646 TTT
1 TTT
6913649 TCATTTATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 8 0.42
17 7 0.37
18 4 0.21
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (18 bp):
TTTAGAATTTAAAATAAT
Found at i:6916841 original size:94 final size:92
Alignment explanation
Indices: 6916613--6916888 Score: 296
Period size: 94 Copynumber: 2.9 Consensus size: 92
6916603 ACACAGGGTA
* *
6916613 TAATGCCGATGCCATGTCCCAGACATAGTCTTACACTAGCTCTCACATATCCGTGCCGATGCCAT
1 TAATGCCGATGCCATGTCCCAGACATAGTCTTACACTGGCT-T-ACATA--CGGGCCGATG-CAT
6916678 GTCCCAGACATGGTCTTACACTGACACATCTCG
61 GTCCCAGACAT-GTCTTACACTGACACATCTCG
*
6916711 TAA--CCGATG-CATGTCCCAGA-AT-GTCTTACACTGGCTTACGTCACGAGGCCGATGCATGTC
1 TAATGCCGATGCCATGTCCCAGACATAGTCTTACACTGGCTTACAT-ACG-GGCCGATGCATGTC
* * * *
6916771 CTAAACATGTCTTACACT-ATCTC-TCGTCT
64 CCAGACATGTCTTACACTGA-CACATC-TCG
** *
6916800 TAATGCCGATGCCATGTCCCAGACATAGTCTTACACTGGCTTTTATAATGTGGCCGATGCATGTC
1 TAATGCCGATGCCATGTCCCAGACATAGTCTTACACTGGCTTACAT-ACG-GGCCGATGCATGTC
*
6916865 CCAGACATGTCTTACACTGGCACA
64 CCAGACATGTCTTACACTGACACA
6916889 CAAATAACCC
Statistics
Matches: 150, Mismatches: 17, Indels: 25
0.78 0.09 0.13
Matches are distributed among these distances:
88 3 0.02
89 17 0.11
90 14 0.09
91 16 0.11
92 13 0.09
93 15 0.10
94 52 0.35
95 11 0.07
96 6 0.04
98 3 0.02
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (92 bp):
TAATGCCGATGCCATGTCCCAGACATAGTCTTACACTGGCTTACATACGGGCCGATGCATGTCCC
AGACATGTCTTACACTGACACATCTCG
Found at i:6920347 original size:15 final size:15
Alignment explanation
Indices: 6920327--6920358 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
6920317 TTTATTGAGC
6920327 TTGGCATATAATTGT
1 TTGGCATATAATTGT
6920342 TTGGCATATAATTGT
1 TTGGCATATAATTGT
6920357 TT
1 TT
6920359 ATCTCTCAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.25, C:0.06, G:0.19, T:0.50
Consensus pattern (15 bp):
TTGGCATATAATTGT
Found at i:6921849 original size:7 final size:7
Alignment explanation
Indices: 6921837--6921870 Score: 68
Period size: 7 Copynumber: 4.9 Consensus size: 7
6921827 GTGTTATCAA
6921837 TTGCAAC
1 TTGCAAC
6921844 TTGCAAC
1 TTGCAAC
6921851 TTGCAAC
1 TTGCAAC
6921858 TTGCAAC
1 TTGCAAC
6921865 TTGCAA
1 TTGCAA
6921871 GTTGTAGCTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.29
Consensus pattern (7 bp):
TTGCAAC
Found at i:6927061 original size:5 final size:6
Alignment explanation
Indices: 6927045--6927075 Score: 53
Period size: 6 Copynumber: 5.0 Consensus size: 6
6927035 AATACTCCAA
6927045 ATTTTT ATTTTT ATTTTT ATTTTTT ATTTTT
1 ATTTTT ATTTTT ATTTTT A-TTTTT ATTTTT
6927076 TATAAAATTC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 18 0.75
7 6 0.25
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
ATTTTT
Found at i:6927062 original size:7 final size:7
Alignment explanation
Indices: 6927046--6927078 Score: 52
Period size: 7 Copynumber: 5.0 Consensus size: 7
6927036 ATACTCCAAA
6927046 TTTTTA-
1 TTTTTAT
6927052 TTTTTA-
1 TTTTTAT
6927058 TTTTTAT
1 TTTTTAT
6927065 TTTTTAT
1 TTTTTAT
6927072 TTTTTAT
1 TTTTTAT
6927079 AAAATTCGAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 12 0.46
7 14 0.54
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (7 bp):
TTTTTAT
Found at i:6927062 original size:12 final size:13
Alignment explanation
Indices: 6927045--6927075 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
6927035 AATACTCCAA
6927045 ATTTTTA-TTTTT
1 ATTTTTATTTTTT
6927057 ATTTTTATTTTTT
1 ATTTTTATTTTTT
6927070 ATTTTT
1 ATTTTT
6927076 TATAAAATTC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 7 0.39
13 11 0.61
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (13 bp):
ATTTTTATTTTTT
Found at i:6927826 original size:6 final size:6
Alignment explanation
Indices: 6927811--6927849 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
6927801 TAAGTAATCG
* * *
6927811 GTAACG GTAGCA GTAGCA GTAACA GTAACA GTAACA GTA
1 GTAACA GTAACA GTAACA GTAACA GTAACA GTAACA GTA
6927850 TTCAACACAC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.41, C:0.15, G:0.26, T:0.18
Consensus pattern (6 bp):
GTAACA
Found at i:6927893 original size:45 final size:45
Alignment explanation
Indices: 6927829--6927936 Score: 164
Period size: 45 Copynumber: 2.4 Consensus size: 45
6927819 AGCAGTAGCA
*
6927829 GTAACAGTAACAGTAACAGTATTCAACACACAAAATG-CTGAATCT
1 GTAACAGTAACAGTAACAGTATTCAACACACAAAATGTC-GAATCG
* * *
6927874 GTAACAGTAACGGTAACAGTATTCGACACACAAAGTGTCGAATCG
1 GTAACAGTAACAGTAACAGTATTCAACACACAAAATGTCGAATCG
6927919 GTAACAGTAACAGTAACA
1 GTAACAGTAACAGTAACA
6927937 ATGTTCGGCA
Statistics
Matches: 57, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
45 56 0.98
46 1 0.02
ACGTcount: A:0.43, C:0.19, G:0.18, T:0.20
Consensus pattern (45 bp):
GTAACAGTAACAGTAACAGTATTCAACACACAAAATGTCGAATCG
Found at i:6929031 original size:3 final size:3
Alignment explanation
Indices: 6929025--6929064 Score: 71
Period size: 3 Copynumber: 13.3 Consensus size: 3
6929015 TAACTTTATT
*
6929025 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATT ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
6929065 ATATCTTATT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Done.