Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 250 of 318
Found at i:78782892 original size:15 final size:15
Alignment explanation
Indices: 78782872--78782901 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
78782862 ATTATGAAAG
78782872 ATATGTTTTGGATTA
1 ATATGTTTTGGATTA
*
78782887 ATATGTTTTGTATTA
1 ATATGTTTTGGATTA
78782902 GAATTTTTGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.27, C:0.00, G:0.17, T:0.57
Consensus pattern (15 bp):
ATATGTTTTGGATTA
Found at i:78783545 original size:43 final size:43
Alignment explanation
Indices: 78783498--78783650 Score: 211
Period size: 43 Copynumber: 3.6 Consensus size: 43
78783488 TATGTTCTCA
*
78783498 TGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTATG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACG
* *
78783541 TGTAAGACCACGTCTGGGACATTAGCATCGATATGTGATTACG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACG
* * * *
78783584 TGTAAGGCC-CAGTCTGGGATAG-TGGCATTGATATGTGATTACA
1 TGTAAGACCAC-GTCTGGGA-CGTTGGCATCGATATGTGATTACG
78783627 TGTAAGACCACGTCTGGGACGTTG
1 TGTAAGACCACGTCTGGGACGTTG
78783651 ACATTGTATG
Statistics
Matches: 95, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
42 2 0.02
43 92 0.97
44 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACG
Found at i:78790113 original size:46 final size:46
Alignment explanation
Indices: 78790046--78790221 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
78790036 TATTTGGGCA
78790046 TCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
78790092 TCTGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
78790137 CATCTGAACTCGTTGAATTGAGTCCGAGTTCACTCATGGATGCGAACG
1 --TCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
78790185 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
78790222 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.56
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:78790201 original size:93 final size:93
Alignment explanation
Indices: 78790042--78790213 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
78790032 AGGATATTTG
* * * * *
78790042 GGCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAG
1 GGCATCTGAACTCGTTGAATTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAACTCGTTGAG
78790107 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
78790135 GGCATCTGAACTCGTTGAATTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCTGAACTCGTTGAATTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAACTCGTTGAG
78790200 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
78790214 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GGCATCTGAACTCGTTGAATTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:78794086 original size:39 final size:39
Alignment explanation
Indices: 78794032--78794155 Score: 196
Period size: 39 Copynumber: 3.2 Consensus size: 39
78794022 ATTTGATGTG
*
78794032 TATCCGGACTTAGGGTCTGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
*
78794071 TATCCGGACTTAGGGTCCGCAGGCTATGTACTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
* *
78794110 TATCCGGACTTAGGGTCCGCAGGCT-TCGTGCTGGAAATG
1 TATCCGGACTTAGGGTCCGCAGGCTAT-GTGCTGGAATTA
78794149 TATCCGG
1 TATCCGG
78794156 GCTAAAGTCC
Statistics
Matches: 79, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
38 1 0.01
39 78 0.99
ACGTcount: A:0.20, C:0.21, G:0.31, T:0.28
Consensus pattern (39 bp):
TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
Found at i:78794169 original size:39 final size:39
Alignment explanation
Indices: 78794126--78794298 Score: 301
Period size: 39 Copynumber: 4.4 Consensus size: 39
78794116 GACTTAGGGT
78794126 CCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTC
1 CCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTC
*
78794165 CCGCATGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTC
1 CCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTC
*
78794204 CCGCAGGCTTCGTGCTGGAAATGTATCCGGGCCAAAGTC
1 CCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTC
* *
78794243 CCACAGGCTTCGTGCTGGAAATGTATCCGGGTTAAAGTC
1 CCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTC
*
78794282 CCGCAGGCTTTGTGCTG
1 CCGCAGGCTTCGTGCTG
78794299 ATAATATAAT
Statistics
Matches: 126, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 126 1.00
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (39 bp):
CCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTC
Found at i:78794169 original size:78 final size:78
Alignment explanation
Indices: 78794032--78794298 Score: 265
Period size: 78 Copynumber: 3.4 Consensus size: 78
78794022 ATTTGATGTG
* * * * **
78794032 TATCCGGACTTAGGGTCTGCAGGCTAT-GTGCTGGAATTATATCCGGACTTAGGGT-CCGCAGGC
1 TATCCGGACTTAGGGTCCGCAGGCT-TCGTGCTGGAAATGTATCCGGGC-TAAAGTCCCGCAGGC
*
78794095 TAT-GTACTGGAATTA
64 T-TCGTACTGGAAATA
*
78794110 TATCCGGACTTAGGGTCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTCCCGCATGCTT
1 TATCCGGACTTAGGGTCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTT
* *
78794175 CGTGCTGGAAATG
66 CGTACTGGAAATA
* ** * *
78794188 TATCCGGGC-TAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCCAAAGTCCCACAGGCT
1 TATCCGGACTTAGGGT-CCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCT
* *
78794252 TCGTGCTGGAAATG
65 TCGTACTGGAAATA
* ** *
78794266 TATCCGG-GTTAAAGTCCCGCAGGCTTTGTGCTG
1 TATCCGGACTTAGGGT-CCGCAGGCTTCGTGCTG
78794299 ATAATATAAT
Statistics
Matches: 166, Mismatches: 18, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
77 10 0.06
78 156 0.94
ACGTcount: A:0.20, C:0.24, G:0.30, T:0.26
Consensus pattern (78 bp):
TATCCGGACTTAGGGTCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTT
CGTACTGGAAATA
Found at i:78804594 original size:40 final size:40
Alignment explanation
Indices: 78804545--78804748 Score: 232
Period size: 40 Copynumber: 5.1 Consensus size: 40
78804535 TCTTCGGAAT
* * *
78804545 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* * ** * *
78804584 TTAACCCGGATTTGGTGACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* * *
78804624 TTAGCCCGGATATAA-CAACTCGCACGAATGGCTTCGGGTC
1 TTAGCCCGGATATAATC-ACTAGCACAAATGCCTTCGGGTC
* *
78804664 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* * *
78804704 TTAGCCCGGATATAATCACTAGCATAAATGCCTTTGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
78804744 TTAGC
1 TTAGC
78804749 TCGGGTATCA
Statistics
Matches: 139, Mismatches: 23, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
39 3 0.02
40 135 0.97
41 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
Found at i:78819504 original size:43 final size:43
Alignment explanation
Indices: 78819457--78819612 Score: 199
Period size: 43 Copynumber: 3.7 Consensus size: 43
78819447 TGTATTCTCG
*
78819457 TGTAAGACCACGCCTGGGACGTTGGCATCGATATGTGATTACA
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACA
* **
78819500 TGTAAGACCACGTCTTGGACGTTGGCATCGATATGTG-TTATG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACA
* ** *
78819542 TGTAAGACC-CTGTTTGGGACAATGGCATCGATATGTAATTACA
1 TGTAAGACCAC-GTCTGGGACGTTGGCATCGATATGTGATTACA
* *
78819585 TGTCAGACCACGTTTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
78819613 TGTATGATAT
Statistics
Matches: 96, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
41 1 0.01
42 33 0.34
43 61 0.64
44 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.29
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACA
Found at i:78821999 original size:80 final size:80
Alignment explanation
Indices: 78821915--78822063 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
78821905 TATGGTAACC
* * * * *
78821915 CGCACTAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACGAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
78821979 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * *
78821995 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACGAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
78822060 CCGG
66 CCGG
78822064 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.23
Consensus pattern (80 bp):
CGCACGAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:78822005 original size:40 final size:38
Alignment explanation
Indices: 78821956--78822063 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
78821946 ATCACGATTT
*
78821956 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
78821996 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
78822036 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
78822064 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:78838482 original size:39 final size:39
Alignment explanation
Indices: 78838401--78838566 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 39
78838391 AAATTGAATG
* *
78838401 ATATCCGGGCTAAG-CCCGAAGACAATTATGC--TGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAGTGG---TT
* *
78838440 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAGTGGTT
**
78838479 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGC-AGTGGTT
* * *
78838519 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCA-GTGGTT
78838559 ATATCCGG
1 ATATCCGG
78838567 TTATATTCCG
Statistics
Matches: 106, Mismatches: 14, Indels: 13
0.80 0.11 0.10
Matches are distributed among these distances:
38 3 0.03
39 42 0.40
40 56 0.53
41 2 0.02
42 3 0.03
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAGTGGTT
Found at i:78845291 original size:29 final size:30
Alignment explanation
Indices: 78845256--78845331 Score: 91
Period size: 29 Copynumber: 2.6 Consensus size: 30
78845246 AATGTGACTA
* *
78845256 GGCCTAACGGGCCTTATAAATGTGA-TTTG
1 GGCCTAATGGGCCTTATAAATGTCATTTTG
* *
78845285 GGCCTAATGGGCCATATACATGTCATTTTG
1 GGCCTAATGGGCCTTATAAATGTCATTTTG
* *
78845315 GGCTTAATTGGCCTTAT
1 GGCCTAATGGGCCTTAT
78845332 GAATATAATT
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
29 21 0.54
30 18 0.46
ACGTcount: A:0.22, C:0.18, G:0.25, T:0.34
Consensus pattern (30 bp):
GGCCTAATGGGCCTTATAAATGTCATTTTG
Found at i:78845317 original size:30 final size:29
Alignment explanation
Indices: 78845256--78845356 Score: 87
Period size: 29 Copynumber: 3.5 Consensus size: 29
78845246 AATGTGACTA
* * *
78845256 GGCCTAACGGGCCTTATAAATGTGATTTG
1 GGCCTAATGGGCCATATAAATGTCATTTG
*
78845285 GGCCTAATGGGCCATATACATGTCATTTTG
1 GGCCTAATGGGCCATATAAATGTCA-TTTG
* * * * * *
78845315 GGCTTAATTGGCCTTATGAATAT-AATTG
1 GGCCTAATGGGCCATATAAATGTCATTTG
*
78845343 GGCTTAATGGGCCA
1 GGCCTAATGGGCCA
78845357 GATACAGGTA
Statistics
Matches: 58, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
28 15 0.26
29 22 0.38
30 21 0.36
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.33
Consensus pattern (29 bp):
GGCCTAATGGGCCATATAAATGTCATTTG
Found at i:78849920 original size:34 final size:34
Alignment explanation
Indices: 78849877--78849953 Score: 111
Period size: 34 Copynumber: 2.3 Consensus size: 34
78849867 TGTTGCATTG
*
78849877 CTGACACTGTAACTG-TAATGGGCTAAGGCCCACA
1 CTGATACTGTAACTGCT-ATGGGCTAAGGCCCACA
* *
78849911 TTGATACTGTAACTGCTATGGGCTAAGGCCTACA
1 CTGATACTGTAACTGCTATGGGCTAAGGCCCACA
78849945 CTGATACTG
1 CTGATACTG
78849954 GACTGTCACT
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
34 37 0.97
35 1 0.03
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.26
Consensus pattern (34 bp):
CTGATACTGTAACTGCTATGGGCTAAGGCCCACA
Found at i:78850228 original size:20 final size:21
Alignment explanation
Indices: 78850190--78850231 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
78850180 CTTTAAATTT
*
78850190 TTACTTTAAATTTGGATTTGC
1 TTACTTTAAATTTAGATTTGC
*
78850211 TTAC-TTAAATTTATATTTGC
1 TTACTTTAAATTTAGATTTGC
78850231 T
1 T
78850232 AGAAGTAGGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 15 0.79
21 4 0.21
ACGTcount: A:0.26, C:0.10, G:0.10, T:0.55
Consensus pattern (21 bp):
TTACTTTAAATTTAGATTTGC
Found at i:78852399 original size:46 final size:46
Alignment explanation
Indices: 78852304--78852516 Score: 154
Period size: 46 Copynumber: 4.6 Consensus size: 46
78852294 ATGTCGATGC
* * *
78852304 CATGTCCC-GAACATGGTCTTACACTAGCTT-TA-CTC-GTAGCTGATG
1 CATGTCCCAG-ACAT-GTCTTACACTGGCTTACATCTCAGT-GCTAATG
* *
78852349 CATGTCCCAGAGATGTCTTACAATGGCTTACATCTCGAG-GCTAATG
1 CATGTCCCAGACATGTCTTACACTGGCTTACATCTC-AGTGCTAATG
* * * * *
78852395 CATGTCTCAGACATGTCTTACACTAGCTTTCGTCTCAGTGCTGATG
1 CATGTCCCAGACATGTCTTACACTGGCTTACATCTCAGTGCTAATG
* * **
78852441 CCATGTCCCAAACATGGTCTTACACTGGCTT---TCGTAATGTGGCCGATG
1 -CATGTCCCAGACAT-GTCTTACACTGGCTTACATC-TCA-GT-GCTAATG
*
78852489 CATGTCCCAAACATGTCTTACACTGGCT
1 CATGTCCCAGACATGTCTTACACTGGCT
78852517 CACAATAGTC
Statistics
Matches: 140, Mismatches: 17, Indels: 21
0.79 0.10 0.12
Matches are distributed among these distances:
44 13 0.09
45 16 0.11
46 62 0.44
47 28 0.20
48 21 0.15
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.31
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTGGCTTACATCTCAGTGCTAATG
Found at i:78857107 original size:25 final size:24
Alignment explanation
Indices: 78857025--78857181 Score: 103
Period size: 25 Copynumber: 6.5 Consensus size: 24
78857015 TTTTAAATTG
* *
78857025 TATA-TATATTA-TTTTATTTTAA
1 TATATTATATTACTTATATTTTAT
* *
78857047 TATAAATATATGTA-TTATATATT-T
1 TAT-ATTATAT-TACTTATATTTTAT
78857071 TATATTATTATTTACTTATATTTTAT
1 TATATTA-TA-TTACTTATATTTTAT
*
78857097 TATATTATATTACTTCATATTTT-C
1 TATATTATATTACTT-ATATTTTAT
* * *
78857121 TATTATCATATTAATATATATTTTAA
1 TA-TATTATATTACT-TATATTTTAT
*
78857147 CATA-TATCATTACTTAT-TATTTAT
1 TATATTAT-ATTACTTATAT-TTTAT
78857171 TATATTATATT
1 TATATTATATT
78857182 TTTATCACAT
Statistics
Matches: 107, Mismatches: 14, Indels: 26
0.73 0.10 0.18
Matches are distributed among these distances:
22 3 0.03
23 5 0.05
24 35 0.33
25 54 0.50
26 10 0.09
ACGTcount: A:0.36, C:0.05, G:0.01, T:0.59
Consensus pattern (24 bp):
TATATTATATTACTTATATTTTAT
Found at i:78857108 original size:5 final size:5
Alignment explanation
Indices: 78857059--78857108 Score: 50
Period size: 5 Copynumber: 10.0 Consensus size: 5
78857049 TAAATATATG
* *
78857059 TATTA TA-TA TTTTA TATTA TTATT- TACTTA TATTT TATTA TATTA TATTA
1 TATTA TATTA TATTA TATTA -TATTA TA-TTA TATTA TATTA TATTA TATTA
78857109 CTTCATATTT
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
4 5 0.14
5 26 0.70
6 6 0.16
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (5 bp):
TATTA
Found at i:78857168 original size:50 final size:48
Alignment explanation
Indices: 78857039--78857182 Score: 116
Period size: 50 Copynumber: 2.9 Consensus size: 48
78857029 TATATTATTT
* * * *
78857039 TATTTTAATATAAATATATGTA-TTATATATTTTATATTATTATTTACTTA
1 TATTTTAACAT-ATTATAT-TACTTAT-TATTTTATATTATCATTTAATTA
** *
78857089 TATTTTATTATATTATATTACTTCA-TATTTTCTATTATCATATTAATATA
1 TATTTTAACATATTATATTACTT-ATTATTTTATATTATCAT-TTAAT-TA
78857139 TATTTTAACATA-TATCATTACTTATTATTTATTATATTAT-ATTT
1 TATTTTAACATATTAT-ATTACTTATTA-TT-TTATATTATCATTT
78857183 TTATCACATA
Statistics
Matches: 78, Mismatches: 8, Indels: 16
0.76 0.08 0.16
Matches are distributed among these distances:
48 16 0.21
49 16 0.21
50 34 0.44
51 4 0.05
52 8 0.10
ACGTcount: A:0.35, C:0.06, G:0.01, T:0.58
Consensus pattern (48 bp):
TATTTTAACATATTATATTACTTATTATTTTATATTATCATTTAATTA
Found at i:78857220 original size:24 final size:26
Alignment explanation
Indices: 78857161--78857223 Score: 71
Period size: 24 Copynumber: 2.5 Consensus size: 26
78857151 TATCATTACT
78857161 TATTATT-TATTATATTATATTTTTA
1 TATTATTATATTATATTATATTTTTA
* *
78857186 TCA-CATAATATT-TA-TATATTTTTA
1 T-ATTATTATATTATATTATATTTTTA
78857210 TATTATTATATTAT
1 TATTATTATATTAT
78857224 TGTACATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 8
0.71 0.10 0.19
Matches are distributed among these distances:
23 1 0.03
24 18 0.60
25 6 0.20
26 5 0.17
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (26 bp):
TATTATTATATTATATTATATTTTTA
Found at i:78857468 original size:21 final size:22
Alignment explanation
Indices: 78857434--78857477 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
78857424 TATTTCAAAA
*
78857434 TTCATTATTAATT-ACTATGTT
1 TTCATTATTAATTAAATATGTT
78857455 TTCATGTATT-ATTAAATATGTT
1 TTCAT-TATTAATTAAATATGTT
78857477 T
1 T
78857478 ATTATCTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.30, C:0.07, G:0.07, T:0.57
Consensus pattern (22 bp):
TTCATTATTAATTAAATATGTT
Found at i:78860130 original size:38 final size:38
Alignment explanation
Indices: 78860087--78860285 Score: 236
Period size: 38 Copynumber: 5.0 Consensus size: 38
78860077 TTTAAAATTA
*
78860087 ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
1 ACATGTATAACCGTGGTATATCCACTTAGCACCACGTT
* *
78860125 ACATGTTTAACCGTTGTATATCCACTTAGCACCACGTT
1 ACATGTATAACCGTGGTATATCCACTTAGCACCACGTT
*
78860163 ACATGTTTAACCGTGGTATATCCACTTAGCACCACGTTAAT
1 ACATGTATAACCGTGGTATATCCACTTAGCACCACG-T--T
* **
78860204 GAATCAATATATGTAACCGTGGCGTATCCACTTAGCACCACGTT
1 --A-C-ATGTA--TAACCGTGGTATATCCACTTAGCACCACGTT
* *
78860248 ACATGTATAACCATGGTATATCCACTTAGCATCACGTT
1 ACATGTATAACCGTGGTATATCCACTTAGCACCACGTT
78860286 TTTTTCATTC
Statistics
Matches: 139, Mismatches: 13, Indels: 18
0.82 0.08 0.11
Matches are distributed among these distances:
38 97 0.70
39 1 0.01
40 4 0.03
41 2 0.01
42 1 0.01
43 1 0.01
44 2 0.01
45 3 0.02
46 1 0.01
47 27 0.19
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.30
Consensus pattern (38 bp):
ACATGTATAACCGTGGTATATCCACTTAGCACCACGTT
Found at i:78867343 original size:42 final size:41
Alignment explanation
Indices: 78867282--78867395 Score: 140
Period size: 42 Copynumber: 2.7 Consensus size: 41
78867272 CTTCGTTTTC
* *
78867282 TCGATGCCATAGTTCAACTATGGTCTTACACATCTTCACATAA
1 TCGATGCCATAG-CCAACTATGGTCTTACACATATTCACAT-A
*
78867325 T-GATGCCATAGCCGAACTATGGTCTTACACATATTCATATA
1 TCGATGCCATAGCC-AACTATGGTCTTACACATATTCACATA
* *
78867366 TCGATGCCATATCCCAGCTATGGTCTTACA
1 TCGATGCCATA-GCCAACTATGGTCTTACA
78867396 TGAATCACAT
Statistics
Matches: 63, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
41 3 0.05
42 57 0.90
43 3 0.05
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.32
Consensus pattern (41 bp):
TCGATGCCATAGCCAACTATGGTCTTACACATATTCACATA
Found at i:78867471 original size:47 final size:47
Alignment explanation
Indices: 78867368--78867487 Score: 163
Period size: 47 Copynumber: 2.6 Consensus size: 47
78867358 TTCATATATC
* * *
78867368 GATGCCATATCCCAGCTATGGTCTTA-CATGAATCACATATCTCACT
1 GATGCCATATCCCAGATATGGTCTTATCATGAAGCACATATCACACT
* * *
78867414 GATGCCATATCCTAGATATGGTCTTATTCA-GTAGCATATATCACACT
1 GATGCCATATCCCAGATATGGTCTTA-TCATGAAGCACATATCACACT
78867461 GATGCCATATCCCAGATATGGTCTTAT
1 GATGCCATATCCCAGATATGGTCTTAT
78867488 ACGGAAATCA
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
46 25 0.38
47 38 0.58
48 2 0.03
ACGTcount: A:0.28, C:0.24, G:0.15, T:0.33
Consensus pattern (47 bp):
GATGCCATATCCCAGATATGGTCTTATCATGAAGCACATATCACACT
Found at i:78867555 original size:31 final size:31
Alignment explanation
Indices: 78867515--78867694 Score: 231
Period size: 31 Copynumber: 5.8 Consensus size: 31
78867505 CTTGTCACTT
* *
78867515 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCAGAAGCTACCACTTTTCACTGATCAG
* *
78867546 GTAGTC-GAAGCTACCATTTTTCACTAATCAG
1 GTAG-CAGAAGCTACCACTTTTCACTGATCAG
* * *
78867577 GTAGCCGGAGCTACCACTTTTCA-TTATTCAG
1 GTAGCAGAAGCTACCACTTTTCACTGA-TCAG
*
78867608 GTAGTCGGAA-CTACCACTTTTCACTGATCAG
1 GTAG-CAGAAGCTACCACTTTTCACTGATCAG
78867639 GTAGCAGAAGCTACCACTTTTCACTGATCAG
1 GTAGCAGAAGCTACCACTTTTCACTGATCAG
*
78867670 GTAGCTGAAGCTACCACTTTTCACT
1 GTAGCAGAAGCTACCACTTTTCACT
78867695 TGTCATTTGT
Statistics
Matches: 132, Mismatches: 11, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
30 7 0.05
31 119 0.90
32 6 0.05
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (31 bp):
GTAGCAGAAGCTACCACTTTTCACTGATCAG
Found at i:78867612 original size:62 final size:63
Alignment explanation
Indices: 78867515--78867694 Score: 260
Period size: 62 Copynumber: 2.9 Consensus size: 63
78867505 CTTGTCACTT
* *
78867515 GTAGCCGAAGCTACCACTATTCACTGATCAGGTAGTC-GAAGCTACCATTTTTCACTAATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAGGTAGTCGGAAGCTACCACTTTTCACTAATCAG
* * *
78867577 GTAGCCGGAGCTACCACTTTTCA-TTATTCAGGTAGTCGGAA-CTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGA-TCAGGTAGTCGGAAGCTACCACTTTTCACTAATCAG
* *
78867639 GTAGCAGAAGCTACCACTTTTCACTGATCAGGTAG-CTGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACTGATCAGGTAGTCGGAAGCTACCACTTTTCACT
78867695 TGTCATTTGT
Statistics
Matches: 105, Mismatches: 9, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
61 6 0.06
62 94 0.90
63 5 0.05
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (63 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAGGTAGTCGGAAGCTACCACTTTTCACTAATCAG
Found at i:78867776 original size:50 final size:51
Alignment explanation
Indices: 78867677--78867798 Score: 185
Period size: 50 Copynumber: 2.4 Consensus size: 51
78867667 CAGGTAGCTG
* *
78867677 AAGCTACCACTTTTCACTTGTCATTTGTCATTGATCAGATAAGTGTAGCCA
1 AAGCTATCACTTATCACTTGTCATTTGTCATTGATCAGATAAGTGTAGCCA
* *
78867728 AAGCTATCACTTATCACTT-TCACTTT-TCCTTGATCAGATAAGTGTAGCCG
1 AAGCTATCACTTATCACTTGTCA-TTTGTCATTGATCAGATAAGTGTAGCCA
78867778 AAGCTATCACTTATCACTTGT
1 AAGCTATCACTTATCACTTGT
78867799 TGCCATGGTC
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
50 44 0.68
51 21 0.32
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.36
Consensus pattern (51 bp):
AAGCTATCACTTATCACTTGTCATTTGTCATTGATCAGATAAGTGTAGCCA
Found at i:78877112 original size:29 final size:28
Alignment explanation
Indices: 78877023--78877138 Score: 92
Period size: 28 Copynumber: 4.1 Consensus size: 28
78877013 GAGGCTCTTT
* * **
78877023 TTTAACAGAGATCGCCACAAAGGCTTCC
1 TTTAACAAAGATAGCCACAAAACCTTCC
* *
78877051 TTTAACAAAGATAG-CAAAAAAGGCC-TCT
1 TTTAACAAAGATAGCCACAAAA--CCTTCC
*
78877079 TTTAACAAAGATAGCCATAAAACCTTCC
1 TTTAACAAAGATAGCCACAAAACCTTCC
* * * *
78877107 GTTTAACAGAGATCGCCACAAAAACTTAC
1 -TTTAACAAAGATAGCCACAAAACCTTCC
78877136 TTT
1 TTT
78877139 TATGAAATTT
Statistics
Matches: 70, Mismatches: 13, Indels: 10
0.75 0.14 0.11
Matches are distributed among these distances:
27 7 0.10
28 33 0.47
29 30 0.43
ACGTcount: A:0.40, C:0.23, G:0.13, T:0.24
Consensus pattern (28 bp):
TTTAACAAAGATAGCCACAAAACCTTCC
Found at i:78883762 original size:49 final size:48
Alignment explanation
Indices: 78883702--78883897 Score: 207
Period size: 49 Copynumber: 3.9 Consensus size: 48
78883692 TATGTAGCTA
* *
78883702 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTT
1 GGTC-CATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAA-TT
* * * *
78883752 CGAT-CATGTGTCTAGTACTAAGT-CAAGGCTACTACGTGTATCAGATAGTT
1 -GGTCCATGTG--TAGTACTAAGTGC-AGGCTACTACGCGTACCAGATAATT
* **
78883802 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATT
1 -GGTC-CATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
*
78883852 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 GGTC-CATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATA
78883898 GTTTGGCTAC
Statistics
Matches: 122, Mismatches: 17, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
49 47 0.39
50 37 0.30
51 32 0.26
52 6 0.05
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.29
Consensus pattern (48 bp):
GGTCCATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
Found at i:78883914 original size:101 final size:99
Alignment explanation
Indices: 78883700--78883900 Score: 255
Period size: 101 Copynumber: 2.0 Consensus size: 99
78883690 TATATGTAGC
* *
78883700 TAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCATGTGTCT
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGATAACTTCGA-CATGTG-CT
* *
78883765 AGTACTAAGTCAAGGCTACTACGTGTATCAGATAGT
64 AGTACTAAGTCAAGGCTACTACGCGTACCAGATAGT
* ** *
78883801 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATTGGTCG-CATGTG-T
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGATAACT--TCGACATGTGCT
*
78883864 AGTACTAAGTGC-AGGCTACTATGCGTACCAGATAGT
64 AGTACTAAGT-CAAGGCTACTACGCGTACCAGATAGT
78883900 T
1 T
78883901 TGGCTACATA
Statistics
Matches: 88, Mismatches: 9, Indels: 8
0.84 0.09 0.08
Matches are distributed among these distances:
99 33 0.38
100 1 0.01
101 51 0.58
103 3 0.03
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.30
Consensus pattern (99 bp):
TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGATAACTTCGACATGTGCTAG
TACTAAGTCAAGGCTACTACGCGTACCAGATAGT
Found at i:78887799 original size:40 final size:40
Alignment explanation
Indices: 78887720--78887937 Score: 271
Period size: 40 Copynumber: 5.5 Consensus size: 40
78887710 AAGCCAGGTA
* * * * *
78887720 CCTTCGGGATTTA-ACCGAATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
78887759 CCTTCGGGACATAGCCCGGATGTAGTAACTCGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
78887799 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
78887839 CCTTCGGGACTTAACCCAGATATATTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
78887879 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
78887919 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
78887938 TTATCATCCG
Statistics
Matches: 157, Mismatches: 19, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
39 13 0.08
40 144 0.92
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:78890318 original size:91 final size:93
Alignment explanation
Indices: 78890171--78890344 Score: 316
Period size: 91 Copynumber: 1.9 Consensus size: 93
78890161 CACTAAACCG
*
78890171 AGTCATAAAAATAATTAAATGTTTATAGTTGATGCTCATTATATGTACATATGCATGTGTGAAAA
1 AGTCATAAAAATAATTAAATGTTCATAGTTGATGCTCATTATATGTACATATGCATGTGTGAAAA
78890236 TTTCATGTTTGAATTTTGGGACCACTAA
66 TTTCATGTTTGAATTTTGGGACCACTAA
*
78890264 AGTCATAAAAAT-ATTAACTG-TCATAGTTGATGCTCATTATATGTACATATGCATGTGTGAAAA
1 AGTCATAAAAATAATTAAATGTTCATAGTTGATGCTCATTATATGTACATATGCATGTGTGAAAA
78890327 TTTCATGTTTGAATTTTG
66 TTTCATGTTTGAATTTTG
78890345 TTAATTATAA
Statistics
Matches: 79, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
91 60 0.76
92 7 0.09
93 12 0.15
ACGTcount: A:0.34, C:0.10, G:0.16, T:0.40
Consensus pattern (93 bp):
AGTCATAAAAATAATTAAATGTTCATAGTTGATGCTCATTATATGTACATATGCATGTGTGAAAA
TTTCATGTTTGAATTTTGGGACCACTAA
Found at i:78891870 original size:24 final size:24
Alignment explanation
Indices: 78891838--78891924 Score: 165
Period size: 24 Copynumber: 3.6 Consensus size: 24
78891828 AATCTCAAAT
78891838 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
78891862 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
78891886 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
78891910 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
78891925 ACATAATAAG
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 61 1.00
ACGTcount: A:0.22, C:0.17, G:0.25, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:78891890 original size:48 final size:48
Alignment explanation
Indices: 78891838--78891946 Score: 175
Period size: 48 Copynumber: 2.3 Consensus size: 48
78891828 AATCTCAAAT
** *
78891838 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCG-ATTTACTATA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATA-A
78891886 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
78891934 GCACTATGTGTGC
1 GCACTATGTGTGC
78891947 AACGTTTGGT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
48 52 0.91
49 5 0.09
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (48 bp):
GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
Found at i:78891937 original size:24 final size:24
Alignment explanation
Indices: 78891838--78891946 Score: 157
Period size: 24 Copynumber: 4.5 Consensus size: 24
78891828 AATCTCAAAT
*
78891838 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
78891862 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATA
*
78891886 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
** *
78891910 GCACTATGTGTGCGAACATAATA-A
1 GCACTATGTGTGCG-ATTTACTATA
78891934 GCACTATGTGTGC
1 GCACTATGTGTGC
78891947 AACGTTTGGT
Statistics
Matches: 78, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
24 73 0.94
25 5 0.06
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATA
Found at i:78907892 original size:40 final size:40
Alignment explanation
Indices: 78907843--78907935 Score: 107
Period size: 40 Copynumber: 2.3 Consensus size: 40
78907833 GCGACTCTCT
* * * * *
78907843 CAAAAGCCTTTGGGACATAGCCCGG-TTATAATAGCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATT-TAAGAACTCGCA
* *
78907883 CAAATGCCTTCGGGACTTAACCCGGATTTAGGAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAAGAACTCGCA
78907923 CAAATGCCTTCGG
1 CAAATGCCTTCGG
78907936 ATCTTAGTCC
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
40 43 0.96
41 2 0.04
ACGTcount: A:0.28, C:0.27, G:0.23, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAAGAACTCGCA
Found at i:78915751 original size:40 final size:40
Alignment explanation
Indices: 78915684--78915835 Score: 146
Period size: 40 Copynumber: 3.8 Consensus size: 40
78915674 AAATTGAATG
* * * *
78915684 ATATCCGGGCTAAGCCCCAAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* * ****
78915724 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGCGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
**
78915764 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GAAATT
* *
78915804 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
78915836 ACATGCTTAT
Statistics
Matches: 91, Mismatches: 18, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 3 0.03
40 86 0.95
41 2 0.02
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
Found at i:78915849 original size:40 final size:39
Alignment explanation
Indices: 78915722--78915851 Score: 147
Period size: 40 Copynumber: 3.3 Consensus size: 39
78915712 ATGCTGGAAA
* * *
78915722 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGCGGC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-A-CAGC
* *
78915763 -TATATCCGGGCTAAGACCCGAAGGCATTCGTGC-GAGTC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACAG-C
*
78915801 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGC
1 -TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACA-GC
78915842 TTATATCCGG
1 TTATATCCGG
78915852 TTATATTCCG
Statistics
Matches: 75, Mismatches: 9, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
37 1 0.01
38 1 0.01
40 70 0.93
41 2 0.03
42 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACAGC
Found at i:78924867 original size:34 final size:34
Alignment explanation
Indices: 78924820--78924891 Score: 119
Period size: 34 Copynumber: 2.1 Consensus size: 34
78924810 AGTGATAGTC
*
78924820 CAGTATCAGTGTGGGCCTTAGCCCA-TAGCAGTTA
1 CAGTATCAATGTGGGCCTTAGCCCATTA-CAGTTA
78924854 CAGTATCAATGTGGGCCTTAGCCCATTACAGTTA
1 CAGTATCAATGTGGGCCTTAGCCCATTACAGTTA
78924888 CAGT
1 CAGT
78924892 GTCAGCAATG
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
34 34 0.94
35 2 0.06
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.28
Consensus pattern (34 bp):
CAGTATCAATGTGGGCCTTAGCCCATTACAGTTA
Found at i:78928673 original size:20 final size:21
Alignment explanation
Indices: 78928643--78928685 Score: 70
Period size: 20 Copynumber: 2.1 Consensus size: 21
78928633 AAGAATAAGG
*
78928643 AAAGAAAGAAAGGAAAAAATA
1 AAAGAAAGAAAAGAAAAAATA
78928664 AAAG-AAGAAAAGAAAAAATA
1 AAAGAAAGAAAAGAAAAAATA
78928684 AA
1 AA
78928686 TAAAACTACC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
20 17 0.81
21 4 0.19
ACGTcount: A:0.79, C:0.00, G:0.16, T:0.05
Consensus pattern (21 bp):
AAAGAAAGAAAAGAAAAAATA
Found at i:78931365 original size:23 final size:23
Alignment explanation
Indices: 78931339--78931389 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
78931329 CAGGCATCAT
*
78931339 AGAATACGCCATAAAAGCTTTAC
1 AGAATACGCCACAAAAGCTTTAC
* * *
78931362 AGAATATGCCACAAAGGCTTTAT
1 AGAATACGCCACAAAAGCTTTAC
78931385 AGAAT
1 AGAAT
78931390 GTTATGTGTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.43, C:0.18, G:0.16, T:0.24
Consensus pattern (23 bp):
AGAATACGCCACAAAAGCTTTAC
Found at i:78937431 original size:2 final size:2
Alignment explanation
Indices: 78937424--78937455 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
78937414 CGGCTCTAGC
78937424 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
78937456 GTTTGCACAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:78938261 original size:40 final size:40
Alignment explanation
Indices: 78938165--78938423 Score: 329
Period size: 40 Copynumber: 6.5 Consensus size: 40
78938155 CGAATGGTGT
* * * * ** *
78938165 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGATTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACCAAAA
* *
78938206 CCGGGTCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
78938246 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
*
78938286 CCGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* *
78938326 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * * * * *
78938366 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATTACTATAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* *
78938406 CCGGGCTATGTCCCGAAG
1 CCGGGTTAAGTCCCGAAG
78938424 ACAATCGAGC
Statistics
Matches: 195, Mismatches: 23, Indels: 1
0.89 0.11 0.00
Matches are distributed among these distances:
40 171 0.88
41 24 0.12
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
Found at i:78944259 original size:46 final size:46
Alignment explanation
Indices: 78944209--78944381 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
78944199 TGGTTGAGCA
*
78944209 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
78944255 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
78944302 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
78944348 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
78944382 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 61 0.57
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:78944365 original size:93 final size:93
Alignment explanation
Indices: 78944206--78944376 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
78944196 GGATGGTTGA
* *
78944206 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
78944271 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
78944299 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
78944364 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
78944377 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:78944643 original size:19 final size:20
Alignment explanation
Indices: 78944606--78944643 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
78944596 ATAAGGTGGT
78944606 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
78944626 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
78944644 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:78951371 original size:46 final size:46
Alignment explanation
Indices: 78951321--78951493 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
78951311 TGGTTGAGCA
*
78951321 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
78951367 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* * *
78951414 TCCGAACTCGTTGAGTTGAGTCTGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
78951460 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCCCTTA
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
78951494 GGGGCGGGTT
Statistics
Matches: 104, Mismatches: 15, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
43 6 0.06
45 5 0.05
46 57 0.55
47 28 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.21, C:0.20, G:0.28, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:78951477 original size:93 final size:93
Alignment explanation
Indices: 78951318--78951488 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
78951308 GGATGGTTGA
*
78951318 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCGTTGAGT
78951383 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * *
78951411 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCATTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCC-GAACTCGTTGAG
78951475 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
78951489 CCTTAGGGGC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:78951755 original size:19 final size:20
Alignment explanation
Indices: 78951718--78951755 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
78951708 ATAAGGTGGT
78951718 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
78951738 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
78951756 TGGTGGCACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:78954401 original size:40 final size:39
Alignment explanation
Indices: 78954356--78954563 Score: 200
Period size: 40 Copynumber: 5.2 Consensus size: 39
78954346 CGGAATACAA
*
78954356 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
78954396 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
78954436 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
78954476 CCGGATGTAGTCACTAGCACAATTGCCTTTGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
* ** * * *
78954516 CGGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
78954556 CCGGATAT
1 CCGGATAT
78954564 CATTCAATTG
Statistics
Matches: 138, Mismatches: 29, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
39 1 0.01
40 137 0.99
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:78954496 original size:80 final size:81
Alignment explanation
Indices: 78954356--78954561 Score: 229
Period size: 80 Copynumber: 2.6 Consensus size: 81
78954346 CGGAATACAA
* * *
78954356 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
78954420 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
78954436 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAA
* *
78954499 TGCCTTTGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
* ** * ** * *
78954516 CGGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
78954562 ATCATTCAAT
Statistics
Matches: 106, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
80 102 0.96
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.26
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:78956435 original size:44 final size:43
Alignment explanation
Indices: 78956358--78956446 Score: 151
Period size: 44 Copynumber: 2.0 Consensus size: 43
78956348 TTGCCTTCAG
78956358 GTTTGCTACAGCCTATAAGATTCCCTTATAGAAGTGGGAACGA
1 GTTTGCTACAGCCTATAAGATTCCCTTATAGAAGTGGGAACGA
* *
78956401 GTTTGCTACAGCCTGTTAAGGTTCCCTTATAGAAGTGGGAACGA
1 GTTTGCTACAGCCT-ATAAGATTCCCTTATAGAAGTGGGAACGA
78956445 GT
1 GT
78956447 GACAATGGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
43 14 0.33
44 29 0.67
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (43 bp):
GTTTGCTACAGCCTATAAGATTCCCTTATAGAAGTGGGAACGA
Found at i:78958228 original size:48 final size:47
Alignment explanation
Indices: 78958107--78958245 Score: 172
Period size: 48 Copynumber: 2.9 Consensus size: 47
78958097 ACCACGTTAC
* * **
78958107 ATGTTTAACCGTGGTATATCCACTTAGCACCACATTA-ATGAATTGAT
1 ATGTGTAA-CGTGGTATATCCACTTAGCACCACATTACATGTATCAAT
* * *
78958154 ATATGTAACTGTGGCATATCCACTTAGCACCACGTTACATGTATCAAT
1 ATGTGTAAC-GTGGTATATCCACTTAGCACCACATTACATGTATCAAT
*
78958202 ATGTGTAATCGTGGTATATCCACTTAGCACCACATTACACGTAT
1 ATGTGTAA-CGTGGTATATCCACTTAGCACCACATTACATGTAT
78958246 AACCATGGTA
Statistics
Matches: 78, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
46 1 0.01
47 31 0.40
48 45 0.58
49 1 0.01
ACGTcount: A:0.31, C:0.22, G:0.15, T:0.32
Consensus pattern (47 bp):
ATGTGTAACGTGGTATATCCACTTAGCACCACATTACATGTATCAAT
Found at i:78959017 original size:41 final size:40
Alignment explanation
Indices: 78958931--78959203 Score: 415
Period size: 41 Copynumber: 6.8 Consensus size: 40
78958921 AAATAGGGCT
* * *
78958931 TTAGCGGCGTTTTTGTTAAACGCCGCTAAA-AACAGAGCA
1 TTAGCGGCGCTTTTGTAAAACGCCGCTAAAGACCAGAGCA
78958970 TTAGCGGCGCTTTTGTTAAAACGCCGCTAAAGACCAGAGCA
1 TTAGCGGCGCTTTTG-TAAAACGCCGCTAAAGACCAGAGCA
*
78959011 TTAGCGGCGCTTTTGGCAAAACGCCGCTAAAGACCAGAGCA
1 TTAGCGGCGCTTTT-GTAAAACGCCGCTAAAGACCAGAGCA
78959052 TTAGCGGCGCTTTTGCTAAAACGCCGCTAAAGACCAGAGCA
1 TTAGCGGCGCTTTTG-TAAAACGCCGCTAAAGACCAGAGCA
* *
78959093 TTAGCGGCGCTTTTGGCAAAACGCCGCTAAAGACCAGACCA
1 TTAGCGGCGCTTTT-GTAAAACGCCGCTAAAGACCAGAGCA
* *
78959134 TTAGCGGCGCTTTTG-GAAACGCCGCTAAAAACCAGAGCA
1 TTAGCGGCGCTTTTGTAAAACGCCGCTAAAGACCAGAGCA
78959173 TTAGCGGCGCTTTCTGTAAAACGCCGCTAAA
1 TTAGCGGCGCTTT-TGTAAAACGCCGCTAAA
78959204 AGTCATATAA
Statistics
Matches: 216, Mismatches: 11, Indels: 12
0.90 0.05 0.05
Matches are distributed among these distances:
39 48 0.22
40 18 0.08
41 148 0.69
42 2 0.01
ACGTcount: A:0.29, C:0.26, G:0.25, T:0.21
Consensus pattern (40 bp):
TTAGCGGCGCTTTTGTAAAACGCCGCTAAAGACCAGAGCA
Found at i:78959267 original size:46 final size:47
Alignment explanation
Indices: 78959217--78959340 Score: 108
Period size: 53 Copynumber: 2.5 Consensus size: 47
78959207 CATATAATTT
*
78959217 CTAAAACCCTAAACCCTAAAAAATAA-TAAACACTAATCTATAACCC
1 CTAAAACCCTAAACCCTAAAAAATAACTAAACACTAAACTATAACCC
** * *
78959263 CTAAAATACTAAACCTTGAAATCCTAAA-AACCTTAAACACTAAACTATAACTC
1 CTAAAACCCTAAACCCT-AAA----AAATAA-C-TAAACACTAAACTATAACCC
* *
78959316 CTAAAACCTTAAACTCTAAAAAATA
1 CTAAAACCCTAAACCCTAAAAAATA
78959341 TCATATGGAT
Statistics
Matches: 59, Mismatches: 10, Indels: 15
0.70 0.12 0.18
Matches are distributed among these distances:
46 14 0.24
47 3 0.05
48 3 0.05
49 1 0.02
50 2 0.03
51 3 0.05
52 3 0.05
53 30 0.51
ACGTcount: A:0.52, C:0.25, G:0.01, T:0.23
Consensus pattern (47 bp):
CTAAAACCCTAAACCCTAAAAAATAACTAAACACTAAACTATAACCC
Found at i:78959337 original size:16 final size:16
Alignment explanation
Indices: 78959273--78959336 Score: 50
Period size: 16 Copynumber: 4.2 Consensus size: 16
78959263 CTAAAATACT
78959273 AAACCTTGAAA-TCCTAA
1 AAACCTT-AAACTCCT-A
*
78959290 AAACCTTAAAC-ACT-
1 AAACCTTAAACTCCTA
78959304 AAA-C-TATAACTCCTA
1 AAACCTTA-AACTCCTA
78959319 AAACCTTAAACT-CTA
1 AAACCTTAAACTCCTA
78959334 AAA
1 AAA
78959337 AATATCATAT
Statistics
Matches: 39, Mismatches: 2, Indels: 14
0.71 0.04 0.25
Matches are distributed among these distances:
12 2 0.05
13 4 0.10
14 5 0.13
15 9 0.23
16 10 0.26
17 9 0.23
ACGTcount: A:0.50, C:0.25, G:0.02, T:0.23
Consensus pattern (16 bp):
AAACCTTAAACTCCTA
Found at i:78963875 original size:2 final size:2
Alignment explanation
Indices: 78963868--78963903 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
78963858 TGTTACTCTG
78963868 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
78963904 TTAATAAGCT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:78964311 original size:43 final size:43
Alignment explanation
Indices: 78964246--78964341 Score: 185
Period size: 43 Copynumber: 2.3 Consensus size: 43
78964236 ATTTAGCTAA
78964246 TACA-TTAAAAAAGTATTGTTCTAGTAATCATTATGCTTGTGT
1 TACAGTTAAAAAAGTATTGTTCTAGTAATCATTATGCTTGTGT
78964288 TACAGTTAAAAAAGTATTGTTCTAGTAATCATTATGCTTGTGT
1 TACAGTTAAAAAAGTATTGTTCTAGTAATCATTATGCTTGTGT
78964331 TACAGTTAAAA
1 TACAGTTAAAA
78964342 CAGTCCTTCC
Statistics
Matches: 53, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
42 4 0.08
43 49 0.92
ACGTcount: A:0.35, C:0.09, G:0.15, T:0.41
Consensus pattern (43 bp):
TACAGTTAAAAAAGTATTGTTCTAGTAATCATTATGCTTGTGT
Found at i:78966205 original size:43 final size:43
Alignment explanation
Indices: 78966171--78966308 Score: 213
Period size: 43 Copynumber: 3.2 Consensus size: 43
78966161 AGGTCATATT
* *
78966171 TTTAGCGGCGTTTTTAGGAAAAGCGCCGCTAAAAGTCATGACC
1 TTTAGCGGCGTTTGTAGGAAAAGCGCCGCTAAAGGTCATGACC
*
78966214 TTTAGCGGCGTTTGTAGGAAAAGCGCCGCTACAGGTCATGACC
1 TTTAGCGGCGTTTGTAGGAAAAGCGCCGCTAAAGGTCATGACC
* * **
78966257 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGGTC
1 TTTAGCGGCGTTTGTAGGAAAAGCGCCGCTAAAGGTCATGACC
78966300 TTTAGCGGC
1 TTTAGCGGC
78966309 ATTTTTTCTA
Statistics
Matches: 87, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 87 1.00
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.25
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTAGGAAAAGCGCCGCTAAAGGTCATGACC
Found at i:78969762 original size:28 final size:29
Alignment explanation
Indices: 78969695--78969795 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
78969685 ATAGTGAATC
*
78969695 CGCACACTTAGTGCTATATACATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
78969724 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
78969752 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
78969782 CGCACACTTAGTGC
1 CGCACACTTAGTGC
78969796 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.36
29 20 0.31
30 19 0.30
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:78977576 original size:28 final size:29
Alignment explanation
Indices: 78977509--78977609 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
78977499 ATAGTGAATC
*
78977509 CGCACACTTAGTGCTATATACATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
78977538 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
78977566 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
78977596 CGCACACTTAGTGC
1 CGCACACTTAGTGC
78977610 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.36
29 20 0.31
30 19 0.30
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:78982181 original size:15 final size:16
Alignment explanation
Indices: 78982155--78982185 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
78982145 ATTAAAAATT
78982155 ATAAAAATATTCAAAA
1 ATAAAAATATTCAAAA
78982171 ATAAAAA-ATTCAAAA
1 ATAAAAATATTCAAAA
78982186 TATATATAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.53
16 7 0.47
ACGTcount: A:0.71, C:0.06, G:0.00, T:0.23
Consensus pattern (16 bp):
ATAAAAATATTCAAAA
Found at i:78982812 original size:22 final size:21
Alignment explanation
Indices: 78982765--78982812 Score: 51
Period size: 22 Copynumber: 2.2 Consensus size: 21
78982755 ATTAAATAAA
78982765 TTAAAAAATAATAAAAGATTT
1 TTAAAAAATAATAAAAGATTT
* * * *
78982786 ATAAATAAATAGTAATAGTTTT
1 TTAAA-AAATAATAAAAGATTT
78982808 TTAAA
1 TTAAA
78982813 CATAATTAAA
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
21 4 0.19
22 17 0.81
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (21 bp):
TTAAAAAATAATAAAAGATTT
Found at i:78987569 original size:10 final size:11
Alignment explanation
Indices: 78987549--78987573 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
78987539 TGAGAAACCC
78987549 TTTCTTTTTTT
1 TTTCTTTTTTT
78987560 TTTCTTTTTTT
1 TTTCTTTTTTT
78987571 TTT
1 TTT
78987574 TTGTAGAACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (11 bp):
TTTCTTTTTTT
Found at i:78989876 original size:49 final size:49
Alignment explanation
Indices: 78989806--78990016 Score: 381
Period size: 49 Copynumber: 4.3 Consensus size: 49
78989796 CCCTTCGGGA
78989806 CTTATCACAT-T-TATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
78989853 CTTATCACATATATATACACTTTCACATTCTTCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
78989902 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
78989951 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
78990000 CTTATCACATATATATA
1 CTTATCACATATATATA
78990017 TCTCATACAA
Statistics
Matches: 158, Mismatches: 4, Indels: 2
0.96 0.02 0.01
Matches are distributed among these distances:
47 10 0.06
48 1 0.01
49 147 0.93
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:78990598 original size:28 final size:28
Alignment explanation
Indices: 78990566--78990622 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
78990556 TTTTATAAGG
78990566 AACTAGACTAATTAAGCTTTGATTACAT
1 AACTAGACTAATTAAGCTTTGATTACAT
78990594 AACTAGACTAATTAAGCTTTGATTACAT
1 AACTAGACTAATTAAGCTTTGATTACAT
78990622 A
1 A
78990623 CTTTATTCAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.40, C:0.14, G:0.11, T:0.35
Consensus pattern (28 bp):
AACTAGACTAATTAAGCTTTGATTACAT
Found at i:78993744 original size:17 final size:16
Alignment explanation
Indices: 78993722--78993765 Score: 61
Period size: 17 Copynumber: 2.6 Consensus size: 16
78993712 TAGTAGAAGG
78993722 GTTCGCCAAACCTTAGA
1 GTTCGCCAAACC-TAGA
*
78993739 GTTCGCCGAATCCTAGA
1 GTTCGCC-AAACCTAGA
78993756 GTTCGCCAAA
1 GTTCGCCAAA
78993766 TGGCGAATCC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 2 0.08
17 18 0.75
18 4 0.17
ACGTcount: A:0.27, C:0.30, G:0.20, T:0.23
Consensus pattern (16 bp):
GTTCGCCAAACCTAGA
Found at i:78995219 original size:43 final size:42
Alignment explanation
Indices: 78995158--78995412 Score: 318
Period size: 43 Copynumber: 6.0 Consensus size: 42
78995148 AGGATTTTCA
*
78995158 ATATGTGATTACGTGTAAGACCCTGTCTGGGACAG-TGGCATCG
1 ATATGTGATTACATGTAAGACCC-GTCTGGGAC-GTTGGCATCG
* *
78995201 ATATGTGATTACATGTAAGACCAAGT-TGGGATGTTGGCATCG
1 ATATGTGATTACATGTAAGACC-CGTCTGGGACGTTGGCATCG
** * * *
78995243 ATATGTGATTATGTATAAGACTACGTCTGGGACGTTGGCATCA
1 ATATGTGATTACATGTAAGAC-CCGTCTGGGACGTTGGCATCG
78995286 ATATGTGATTACATGTAAGACCCTGTCTGGGACAG-TGGCATCG
1 ATATGTGATTACATGTAAGACCC-GTCTGGGAC-GTTGGCATCG
* *
78995329 ATATGTGATTACATGTAAGACCACGTCTAGGACGTTAGCATCG
1 ATATGTGATTACATGTAAGACC-CGTCTGGGACGTTGGCATCG
*
78995372 ATATGTGATTACATGTAAGACTACGTCTGGGACGTTGGCAT
1 ATATGTGATTACATGTAAGAC-CCGTCTGGGACGTTGGCAT
78995413 TGTACGATAT
Statistics
Matches: 183, Mismatches: 20, Indels: 18
0.83 0.09 0.08
Matches are distributed among these distances:
41 1 0.01
42 35 0.19
43 145 0.79
44 2 0.01
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (42 bp):
ATATGTGATTACATGTAAGACCCGTCTGGGACGTTGGCATCG
Found at i:78997086 original size:2 final size:2
Alignment explanation
Indices: 78997079--78997118 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
78997069 AACCATATGT
78997079 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
78997119 CATTCGAATA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:78997478 original size:22 final size:20
Alignment explanation
Indices: 78997451--78997490 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
78997441 AATCCTTTTT
78997451 ATAATACCAAAATTATATAAAA
1 ATAATA-CAAAATT-TATAAAA
78997473 ATAATACAAAATTTATAA
1 ATAATACAAAATTTATAA
78997491 TATATATACC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 5 0.28
21 7 0.39
22 6 0.33
ACGTcount: A:0.62, C:0.07, G:0.00, T:0.30
Consensus pattern (20 bp):
ATAATACAAAATTTATAAAA
Found at i:78997657 original size:41 final size:41
Alignment explanation
Indices: 78997612--78997692 Score: 153
Period size: 41 Copynumber: 2.0 Consensus size: 41
78997602 AACATTTATT
78997612 TTTACAAATAAGTATATTATAACATTTGTATAACATATAAA
1 TTTACAAATAAGTATATTATAACATTTGTATAACATATAAA
*
78997653 TTTACAAATAAGTATATTATAACATTTTTATAACATATAA
1 TTTACAAATAAGTATATTATAACATTTGTATAACATATAA
78997693 GTTATTTTTT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.48, C:0.07, G:0.04, T:0.41
Consensus pattern (41 bp):
TTTACAAATAAGTATATTATAACATTTGTATAACATATAAA
Found at i:78997838 original size:31 final size:31
Alignment explanation
Indices: 78997776--78997838 Score: 76
Period size: 30 Copynumber: 2.0 Consensus size: 31
78997766 TGTTTATGGT
*
78997776 TAAAATATAATTTTTATAACTTAAACTTGTA
1 TAAAATATAATTTTTATAACTTAAACATGTA
*
78997807 TAAAA-ATAATTTTT-TAAAGTTAAATCATGTA
1 TAAAATATAATTTTTAT-AACTTAAA-CATGTA
78997838 T
1 T
78997839 GAGTGATTGA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
29 1 0.04
30 16 0.57
31 11 0.39
ACGTcount: A:0.46, C:0.05, G:0.05, T:0.44
Consensus pattern (31 bp):
TAAAATATAATTTTTATAACTTAAACATGTA
Found at i:79000153 original size:29 final size:30
Alignment explanation
Indices: 79000107--79000165 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 30
79000097 GAATTGAATC
*
79000107 AAATCAAAATTTCATGTATAAAATTACACA
1 AAATCAAAAGTTCATGTATAAAATTACACA
* *
79000137 AAATC-AAAGTTCGTGTATACAATTACACA
1 AAATCAAAAGTTCATGTATAAAATTACACA
79000166 TTAAACCATA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 21 0.81
30 5 0.19
ACGTcount: A:0.49, C:0.15, G:0.07, T:0.29
Consensus pattern (30 bp):
AAATCAAAAGTTCATGTATAAAATTACACA
Found at i:79000868 original size:2 final size:2
Alignment explanation
Indices: 79000857--79000885 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
79000847 TCTAAATTTC
79000857 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
79000886 GAGAATAGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:79001179 original size:22 final size:24
Alignment explanation
Indices: 79001125--79001180 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
79001115 AAATGAAATT
*
79001125 ATAATAATAAATAATTTATTATATA
1 ATAAT-ATAAATAATGTATTATATA
79001150 ATTAAATATAAAT-ATGTATT-TATA
1 A-T-AATATAAATAATGTATTATATA
79001174 ATAATAT
1 ATAATAT
79001181 TGAAAATTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
22 5 0.18
23 1 0.04
24 5 0.18
25 7 0.25
26 7 0.25
27 3 0.11
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.45
Consensus pattern (24 bp):
ATAATATAAATAATGTATTATATA
Found at i:79005988 original size:21 final size:21
Alignment explanation
Indices: 79005963--79006002 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
79005953 ATTCCTTGAC
* *
79005963 TTCCTACAATATATTATCTAT
1 TTCCTAAAATAGATTATCTAT
79005984 TTCCTAAAATAGATTATCT
1 TTCCTAAAATAGATTATCT
79006003 CGTATTATTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.35, C:0.17, G:0.03, T:0.45
Consensus pattern (21 bp):
TTCCTAAAATAGATTATCTAT
Found at i:79010780 original size:26 final size:26
Alignment explanation
Indices: 79010751--79010803 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
79010741 TCAAACATGC
79010751 ATTTAGGTCAATTTA-CTCCTAGAGGT
1 ATTTAGGT-AATTTATCTCCTAGAGGT
* * *
79010777 ATTTTGGTACTTTATCTCCTAGGGGT
1 ATTTAGGTAATTTATCTCCTAGAGGT
79010803 A
1 A
79010804 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 5 0.22
26 18 0.78
ACGTcount: A:0.23, C:0.15, G:0.21, T:0.42
Consensus pattern (26 bp):
ATTTAGGTAATTTATCTCCTAGAGGT
Found at i:79012093 original size:24 final size:24
Alignment explanation
Indices: 79012056--79012156 Score: 130
Period size: 24 Copynumber: 4.2 Consensus size: 24
79012046 CCAACTCCTG
* *
79012056 CTCCTTGATCAGCTCCTAAATATT
1 CTCCTTTATCAGCTCCTAAATCTT
* *
79012080 CTCCTTTATTAGCTCCTAAATCCT
1 CTCCTTTATCAGCTCCTAAATCTT
* *
79012104 CTCCCTTATCATCTCCTAAATCTT
1 CTCCTTTATCAGCTCCTAAATCTT
* *
79012128 CTCCCTTATCAGCTCTTAAATCTT
1 CTCCTTTATCAGCTCCTAAATCTT
79012152 CTCCT
1 CTCCT
79012157 GACAGCCTTT
Statistics
Matches: 66, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 66 1.00
ACGTcount: A:0.21, C:0.35, G:0.04, T:0.41
Consensus pattern (24 bp):
CTCCTTTATCAGCTCCTAAATCTT
Found at i:79020408 original size:2 final size:2
Alignment explanation
Indices: 79020359--79020398 Score: 66
Period size: 2 Copynumber: 21.0 Consensus size: 2
79020349 AAAGTCTCTA
79020359 AT AT A- AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
79020399 GAAAATATAT
Statistics
Matches: 36, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
1 2 0.06
2 34 0.94
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:79022599 original size:29 final size:29
Alignment explanation
Indices: 79022566--79022623 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
79022556 ATTTATTTAG
79022566 GGTTTA-AGAATTTTTT-AAAAATAAATTAA
1 GGTTTAGAG-ATTTTTTAAAAAAT-AATTAA
*
79022595 GGTTTAGAGTTTTTTTAAAAAATAATTAA
1 GGTTTAGAGATTTTTTAAAAAATAATTAA
79022624 ATTAGGTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
29 18 0.69
30 8 0.31
ACGTcount: A:0.45, C:0.00, G:0.12, T:0.43
Consensus pattern (29 bp):
GGTTTAGAGATTTTTTAAAAAATAATTAA
Found at i:79022635 original size:34 final size:32
Alignment explanation
Indices: 79022587--79022721 Score: 114
Period size: 34 Copynumber: 4.0 Consensus size: 32
79022577 TTTTTAAAAA
79022587 TAAATTAAGGTTTAGAGTTTTTTTAAAAAATAAT
1 TAAATT-AGGTTTAGAG-TTTTTTAAAAAATAAT
**
79022621 TAAATTAGGTTTTAG-GGGTTTTAAATAAATAAAT
1 TAAATTAGG-TTTAGAGTTTTTTAAA-AAAT-AAT
*
79022655 TAAATTATAGTTTAGAG-TTTTTAAGAAAATTAAT
1 TAAATTA-GGTTTAGAGTTTTTTAA-AAAA-TAAT
** *
79022689 TAAATTAGGGCCTAG-TTTTTTTAAAAAATAAT
1 TAAATTA-GGTTTAGAGTTTTTTAAAAAATAAT
79022721 T
1 T
79022722 TTGTGTTTCT
Statistics
Matches: 84, Mismatches: 9, Indels: 18
0.76 0.08 0.16
Matches are distributed among these distances:
32 12 0.14
33 12 0.14
34 56 0.67
35 4 0.05
ACGTcount: A:0.42, C:0.01, G:0.13, T:0.43
Consensus pattern (32 bp):
TAAATTAGGTTTAGAGTTTTTTAAAAAATAAT
Found at i:79022711 original size:68 final size:66
Alignment explanation
Indices: 79022587--79022719 Score: 153
Period size: 68 Copynumber: 2.0 Consensus size: 66
79022577 TTTTTAAAAA
***
79022587 TAAATTAAGGTTTAGAGTTTTTTTAAAAAATAATTAAATTAGGTTTTAGGGGTTTTAAATAAATA
1 TAAATTAAGGTTTAGAG-TTTTTTAAAAAATAATTAAATTAGGGCCTAGGGGTTTTAAA-AAATA
79022652 AAT
64 AAT
***
79022655 TAAATTATA-GTTTAGAG-TTTTTAAGAAAATTAATTAAATTAGGGCCTAGTTTTTTTAAAAAAT
1 TAAATTA-AGGTTTAGAGTTTTTTAA-AAAA-TAATTAAATTAGGGCCTAGGGGTTTTAAAAAAT
79022718 AA
63 AA
79022720 TTTTGTGTTT
Statistics
Matches: 56, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
66 7 0.12
67 10 0.18
68 38 0.68
69 1 0.02
ACGTcount: A:0.43, C:0.02, G:0.14, T:0.42
Consensus pattern (66 bp):
TAAATTAAGGTTTAGAGTTTTTTAAAAAATAATTAAATTAGGGCCTAGGGGTTTTAAAAAATAAA
T
Found at i:79024773 original size:40 final size:40
Alignment explanation
Indices: 79024677--79024828 Score: 175
Period size: 40 Copynumber: 3.8 Consensus size: 40
79024667 CGAATGGTAT
* * *
79024677 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAG-TAACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGCT-ATTATAA
*
79024717 TCCGGG-TCAATTCCCGAAGGCATTTGTGCGAGCTATTATAA
1 -CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGCTATTATAA
*
79024758 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTATTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTATTATAA
* * *
79024798 CCGGGCTATGTCCCGAAGGCTTTTGAGCGAG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
79024829 TCGCTATATC
Statistics
Matches: 98, Mismatches: 9, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
40 70 0.71
41 28 0.29
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTATTATAA
Found at i:79039498 original size:40 final size:40
Alignment explanation
Indices: 79039440--79039577 Score: 131
Period size: 40 Copynumber: 3.5 Consensus size: 40
79039430 TATCCGGGCT
* *
79039440 AAGTCCCGAAAGCTTTTGTGCTAAG-TGACTA-AATCCGGGTC
1 AAGTCCCGAAGGCATTTGTGC-AAGCT-ACTATAA-CCGGGTC
* * *
79039481 AA-TTCCGAAGGCATTTGTGCAAGCTATTATAACCGGGTT
1 AAGTCCCGAAGGCATTTGTGCAAGCTACTATAACCGGGTC
* *
79039520 AAGTCCCGAAGGCATTTGTGCGAGCTATTATAACCGGG-C
1 AAGTCCCGAAGGCATTTGTGCAAGCTACTATAACCGGGTC
* *
79039559 TATGTCCCGAAGGCTTTTG
1 -AAGTCCCGAAGGCATTTG
79039578 AGCGAGTCGC
Statistics
Matches: 83, Mismatches: 10, Indels: 9
0.81 0.10 0.09
Matches are distributed among these distances:
39 14 0.17
40 67 0.81
41 2 0.02
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.28
Consensus pattern (40 bp):
AAGTCCCGAAGGCATTTGTGCAAGCTACTATAACCGGGTC
Found at i:79039583 original size:40 final size:40
Alignment explanation
Indices: 79039485--79039583 Score: 153
Period size: 40 Copynumber: 2.5 Consensus size: 40
79039475 CGGGTCAATT
* *
79039485 CCGAAGGCATTTGTGCAAGCTATTATAACCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGCTATTATAACCGGGCTAAGTC
*
79039525 CCGAAGGCATTTGTGCGAGCTATTATAACCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGCTATTATAACCGGGCTAAGTC
* *
79039565 CCGAAGGCTTTTGAGCGAG
1 CCGAAGGCATTTGTGCGAG
79039584 TCGCTATATC
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 54 1.00
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGCTATTATAACCGGGCTAAGTC
Found at i:79047533 original size:40 final size:39
Alignment explanation
Indices: 79047437--79047588 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 39
79047427 CGAATGGTAT
* * *
79047437 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAG-TGACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGCT-ATTAAA
*
79047477 TCCGGG-TCAATTCCCGAAGGCATTTGTGCGAGCTATTAGAA
1 -CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGCTATTA-AA
*
79047518 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTATTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTATTA-AA
* * *
79047558 CCGGGCTATGTCCCGAAGGCTTTTGAGCGAG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
79047589 TCGCTATATC
Statistics
Matches: 97, Mismatches: 10, Indels: 9
0.84 0.09 0.08
Matches are distributed among these distances:
40 69 0.71
41 28 0.29
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTATTAAA
Found at i:79049285 original size:125 final size:124
Alignment explanation
Indices: 79048982--79049315 Score: 372
Period size: 125 Copynumber: 2.7 Consensus size: 124
79048972 CGGGGTGTTA
* * * ** * *
79048982 CAAAAACGCTTCAAACAGGATGAACTGTCAGCAAAATTACTGAAAAAAATCCCATTTAGACTCTT
1 CAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAATTACTGAAAAAAATCCCACGT-GAATATT
** *
79049047 TTTTTCTACAGTAGTTTTTGAAAAAATAATTTTGAGAAGACAGTTCTGAAAAAATAATGC
65 TTTTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACAGTTCTGAAAAAACAATGC
*
79049107 CAAAAA--CTTCAAGCAGGATGCACTT-TTAGCAAAATTACTGAAAAAAACTCCCACGTGAATAT
1 CAAAAACGCTTCAAGCAGGATGCA-TTGTCAGCAAAATTACTGAAAAAAA-TCCCACGTGAATAT
** ** * * *
79049169 TATTTTTCTACAGTAGTTCCT-AAAATTTTTTTTTTGAGAAGACTGTTCTG-AAAAACAGTGT
64 T-TTTTTCTACAGTAGTTCCTGAAAA-AATAATTTTGAGAAGACAGTTCTGAAAAAACAATGC
* * *
79049230 CAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAATACTGAAAAAAGATCCCACGTGGACACT
1 CAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAATTACTGAAAAAA-ATCCCACGTGAATA-T
*
79049295 CTTTTTCTACAGTAGTTCCTG
64 TTTTTTCTACAGTAGTTCCTG
79049316 TTTGGCTTTA
Statistics
Matches: 176, Mismatches: 23, Indels: 19
0.81 0.11 0.09
Matches are distributed among these distances:
123 58 0.33
124 45 0.26
125 71 0.40
126 2 0.01
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.30
Consensus pattern (124 bp):
CAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAATTACTGAAAAAAATCCCACGTGAATATTT
TTTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACAGTTCTGAAAAAACAATGC
Found at i:79050017 original size:5 final size:5
Alignment explanation
Indices: 79050009--79050039 Score: 55
Period size: 5 Copynumber: 6.4 Consensus size: 5
79049999 CAAAAATAAA
79050009 ATTTT ATTTT A-TTT ATTTT ATTTT ATTTT AT
1 ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT AT
79050040 GGTTGGCATT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.16
5 21 0.84
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (5 bp):
ATTTT
Found at i:79050028 original size:14 final size:14
Alignment explanation
Indices: 79050009--79050036 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
79049999 CAAAAATAAA
79050009 ATTTTATTTTATTT
1 ATTTTATTTTATTT
79050023 ATTTTATTTTATTT
1 ATTTTATTTTATTT
79050037 TATGGTTGGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (14 bp):
ATTTTATTTTATTT
Found at i:79052976 original size:40 final size:39
Alignment explanation
Indices: 79052926--79053110 Score: 173
Period size: 40 Copynumber: 4.6 Consensus size: 39
79052916 GCTACTCGTT
* * *
79052926 CAAATACCTTCGGGATATAGCCCGG-TTATAGTAGCTCACA
1 CAAATGCCTTCGGGAT-TAGCCCGGATT-TAGTAACTCGCA
* *
79052966 CAAAGGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-TTAGCCCGGATTTAGTAACTCGCA
*
79053006 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA--TTAGCCCGGATTTAGTAACTCGCA
* * *
79053046 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTCACTTAGCA
1 CAAATGCCTTCGGGA--TTAGCCCGGATTTAGTAAC-TCGCA
79053087 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGA-TTAGCCCGGA
79053111 CATCATTCGA
Statistics
Matches: 129, Mismatches: 11, Indels: 11
0.85 0.07 0.07
Matches are distributed among these distances:
39 19 0.15
40 102 0.79
41 8 0.06
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGATTAGCCCGGATTTAGTAACTCGCA
Found at i:79053038 original size:80 final size:79
Alignment explanation
Indices: 79052932--79053110 Score: 197
Period size: 80 Copynumber: 2.3 Consensus size: 79
79052922 CGTTCAAATA
*
79052932 CCTTCGGGA-TATAGCCCGG-TTATAGTAGCTCACACAAAGGCCTTCGGGA-CTTAACCCGGATT
1 CCTTCGGGACT-TAGCCCGGATT-TAGTAACTCACACAAAGGCCTTC-GGATCTTAACCCGGATT
*
79052994 TAGTAAC-TCGCACAAATG
63 TAGTAACTTAGCAC-AA-G
* * * **
79053012 CCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATTTA
1 CCTTCGGGA-CTTAGCCCGGATTTAGTAACTCACACAAAGGCCTTCGGATCTTAACCCGGATTTA
*
79053076 GTCACTTAGCACAAG
65 GTAACTTAGCACAAG
79053091 CCTTCGGGACTTAGCCCGGA
1 CCTTCGGGACTTAGCCCGGA
79053111 CATCATTCGA
Statistics
Matches: 84, Mismatches: 9, Indels: 13
0.79 0.08 0.12
Matches are distributed among these distances:
79 22 0.26
80 54 0.64
81 8 0.10
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAAGGCCTTCGGATCTTAACCCGGATTTAG
TAACTTAGCACAAG
Found at i:79053829 original size:2 final size:2
Alignment explanation
Indices: 79053822--79053854 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
79053812 ATGTGCAAAC
79053822 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
79053855 AGTTGTTGAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:79061022 original size:39 final size:40
Alignment explanation
Indices: 79060973--79061156 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
79060963 GCTACTCGTT
* * *
79060973 CAAATACCTTCGGGACATAGCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
79061013 CAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
79061052 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * *
79061092 CAAATGCCTTC-GGATCTTAGTCCGGA-TTAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
79061132 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
79061157 CATCATTCGA
Statistics
Matches: 130, Mismatches: 9, Indels: 11
0.87 0.06 0.07
Matches are distributed among these distances:
39 58 0.45
40 72 0.55
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:79061084 original size:79 final size:79
Alignment explanation
Indices: 79060979--79061156 Score: 213
Period size: 79 Copynumber: 2.3 Consensus size: 79
79060969 CGTTCAAATA
* *
79060979 CCTTCGGGACATAGCCCGG-TTATAGTAGCTCGCACAAA-GCCTTCGGGA-CTTAACCCGGATTT
1 CCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGGA-TT
*
79061041 AGTAAC-TCGCACAAATG
63 AGTAACTTAGCACAAA-G
* **
79061058 CCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATTAG
1 CCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATTAG
*
79061122 TCACTTAGCACAAAG
65 TAACTTAGCACAAAG
79061137 CCTTCGGGACTTAGCCCGGA
1 CCTTCGGGACTTAGCCCGGA
79061157 CATCATTCGA
Statistics
Matches: 85, Mismatches: 8, Indels: 12
0.81 0.08 0.11
Matches are distributed among these distances:
78 3 0.04
79 54 0.64
80 28 0.33
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATTAGT
AACTTAGCACAAAG
Found at i:79061874 original size:2 final size:2
Alignment explanation
Indices: 79061867--79061892 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
79061857 CATGTGCAAC
79061867 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
79061893 GTGCAAGGCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:79070190 original size:29 final size:29
Alignment explanation
Indices: 79070157--79070221 Score: 121
Period size: 29 Copynumber: 2.2 Consensus size: 29
79070147 GTGACGAGAT
79070157 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
79070186 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
79070215 CGGCACT
1 TGGCACT
79070222 GGGTGTGCGA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:79096071 original size:24 final size:24
Alignment explanation
Indices: 79096044--79096129 Score: 82
Period size: 24 Copynumber: 3.5 Consensus size: 24
79096034 GCGTTTCCTT
*
79096044 GCACACATAGTGCTATATAATCTC
1 GCACACATAGTGCCATATAATCTC
* * * *
79096068 GCACACATAGTGCCATGTAGTTTTT
1 GCACACATAGTGCCATATA-ATCTC
** *
79096093 GCACACATAGTGCCGCATAACCTC
1 GCACACATAGTGCCATATAATCTC
*
79096117 GCACGCATAGTGC
1 GCACACATAGTGC
79096130 TGAAATCTCT
Statistics
Matches: 48, Mismatches: 13, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
24 30 0.62
25 18 0.38
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.26
Consensus pattern (24 bp):
GCACACATAGTGCCATATAATCTC
Found at i:79096095 original size:49 final size:47
Alignment explanation
Indices: 79096018--79096129 Score: 127
Period size: 49 Copynumber: 2.3 Consensus size: 47
79096008 TCTTACTCAT
* * * *
79096018 TCGCACACATAGTGCCGCGTTTCCTTGCACACATAGTGCTATATAATC
1 TCGCACACATAGTGCCGAGTTT-CTTGCACACATAGTGCCACATAACC
*
79096066 TCGCACACATAGTGCCATGTAGTTT-TTGCACACATAGTGCCGCATAACC
1 TCGCACACATAGTGCC--G-AGTTTCTTGCACACATAGTGCCACATAACC
*
79096115 TCGCACGCATAGTGC
1 TCGCACACATAGTGC
79096130 TGAAATCTCT
Statistics
Matches: 55, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
48 16 0.29
49 34 0.62
50 1 0.02
51 4 0.07
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (47 bp):
TCGCACACATAGTGCCGAGTTTCTTGCACACATAGTGCCACATAACC
Found at i:79102868 original size:2 final size:2
Alignment explanation
Indices: 79102863--79102918 Score: 87
Period size: 2 Copynumber: 28.5 Consensus size: 2
79102853 ACACACACAC
*
79102863 AT AT AT AT AT AT AT AT AT A- AT AA AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
79102904 AC AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT A
79102919 AATGACAAAC
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
1 1 0.02
2 48 0.98
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:79108130 original size:25 final size:25
Alignment explanation
Indices: 79108068--79108124 Score: 96
Period size: 25 Copynumber: 2.3 Consensus size: 25
79108058 TGGCCCTCTA
*
79108068 GAGCTTCTTGTTATATGGTTTTTGC
1 GAGCTTCTTGTTATATGGTTCTTGC
*
79108093 GAGGTTCTTGTTATATGGTTCTTGC
1 GAGCTTCTTGTTATATGGTTCTTGC
79108118 GAGCTTC
1 GAGCTTC
79108125 ACGTTAATAG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.12, C:0.14, G:0.26, T:0.47
Consensus pattern (25 bp):
GAGCTTCTTGTTATATGGTTCTTGC
Found at i:79112376 original size:16 final size:16
Alignment explanation
Indices: 79112355--79112387 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
79112345 GAAAGAATTT
79112355 TTAGACCATACTTGGA
1 TTAGACCATACTTGGA
79112371 TTAGACCATACTTGGA
1 TTAGACCATACTTGGA
79112387 T
1 T
79112388 AGCTTTGTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.33
Consensus pattern (16 bp):
TTAGACCATACTTGGA
Found at i:79117481 original size:23 final size:23
Alignment explanation
Indices: 79117451--79117498 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
79117441 TATCCCGATC
79117451 GGTCGTGATCTT-TCATGTGTTGT
1 GGTCGTGATCTTGT-ATGTGTTGT
*
79117474 GGTCGTGATCTTGTATTTGTTGT
1 GGTCGTGATCTTGTATGTGTTGT
79117497 GG
1 GG
79117499 GCACTCCACA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 22 0.96
24 1 0.04
ACGTcount: A:0.08, C:0.10, G:0.33, T:0.48
Consensus pattern (23 bp):
GGTCGTGATCTTGTATGTGTTGT
Found at i:79117545 original size:25 final size:25
Alignment explanation
Indices: 79117512--79117592 Score: 83
Period size: 26 Copynumber: 3.2 Consensus size: 25
79117502 CTCCACAACT
* *
79117512 TTTGTGAGCTCCC-GTTATATGGCTC
1 TTTGTGAGCTCCCAATTA-AAGGCTC
79117537 TTTGTGAGCTTCCCAATTAAAGGCTC
1 TTTGTGAGC-TCCCAATTAAAGGCTC
** *
79117563 TTTGTGAGCTTCTTAATTAATGGCTC
1 TTTGTGAGC-TCCCAATTAAAGGCTC
79117589 TTTG
1 TTTG
79117593 AAGCTTCCCG
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
25 9 0.18
26 37 0.76
27 3 0.06
ACGTcount: A:0.17, C:0.20, G:0.21, T:0.42
Consensus pattern (25 bp):
TTTGTGAGCTCCCAATTAAAGGCTC
Found at i:79117669 original size:25 final size:25
Alignment explanation
Indices: 79117530--79117670 Score: 101
Period size: 26 Copynumber: 5.6 Consensus size: 25
79117520 CTCCCGTTAT
79117530 ATGGCTCTTTGTGAGCTTCCCAATTA
1 ATGGCTCTTTG-GAGCTTCCCAATTA
* **
79117556 AAGGCTCTTTGTGAGCTTCTTAATTA
1 ATGGCTCTTTG-GAGCTTCCCAATTA
* *
79117582 ATGGCTCTTTGAAGCTTCCCGA-T-
1 ATGGCTCTTTGGAGCTTCCCAATTA
* **
79117605 ATGGCTCGCTT-GAATTTCCCAA-TA
1 ATGGCTC-TTTGGAGCTTCCCAATTA
* ** **
79117629 TATGGCTATTCAGAGCTTCCTGATTA
1 -ATGGCTCTTTGGAGCTTCCCAATTA
79117655 ATGGCTCTTTGGAGCT
1 ATGGCTCTTTGGAGCT
79117671 ACATGTTATT
Statistics
Matches: 87, Mismatches: 23, Indels: 11
0.72 0.19 0.09
Matches are distributed among these distances:
23 15 0.17
24 4 0.05
25 33 0.38
26 35 0.40
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.38
Consensus pattern (25 bp):
ATGGCTCTTTGGAGCTTCCCAATTA
Found at i:79123105 original size:29 final size:28
Alignment explanation
Indices: 79123014--79123115 Score: 80
Period size: 29 Copynumber: 3.5 Consensus size: 28
79123004 ACTCAATCAC
** **
79123014 GCACACTTAGTGCCATGTGATTCAAGCCC
1 GCACACTTAGTGCCAT-ACATTCAAGCTT
* * * *
79123043 GCACACATAGTGCCATATAGTCCAAACTCT
1 GCACACTTAGTGCCATACA-TTCAAGCT-T
79123073 -CACACTTAGTGCCATACATTACAAGCTT
1 GCACACTTAGTGCCATACATT-CAAGCTT
*
79123101 GCACACTCAGTGCCA
1 GCACACTTAGTGCCA
79123116 ATCTCGTCAC
Statistics
Matches: 57, Mismatches: 12, Indels: 8
0.74 0.16 0.10
Matches are distributed among these distances:
28 3 0.05
29 54 0.95
ACGTcount: A:0.29, C:0.31, G:0.16, T:0.24
Consensus pattern (28 bp):
GCACACTTAGTGCCATACATTCAAGCTT
Found at i:79129983 original size:27 final size:28
Alignment explanation
Indices: 79129927--79129996 Score: 133
Period size: 27 Copynumber: 2.5 Consensus size: 28
79129917 AAATTTGTAC
79129927 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
79129955 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
79129982 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
79129997 GACTCACTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 25 0.60
28 17 0.40
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:79138243 original size:22 final size:19
Alignment explanation
Indices: 79138200--79138238 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
79138190 TTAACCTTAG
79138200 TATAATAAACATTTAAGCT
1 TATAATAAACATTTAAGCT
79138219 TATAATAAACATTTAAGCT
1 TATAATAAACATTTAAGCT
79138238 T
1 T
79138239 TTTATGGATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.46, C:0.10, G:0.05, T:0.38
Consensus pattern (19 bp):
TATAATAAACATTTAAGCT
Found at i:79140344 original size:46 final size:46
Alignment explanation
Indices: 79140294--79140385 Score: 175
Period size: 46 Copynumber: 2.0 Consensus size: 46
79140284 ATTGTCTCGA
*
79140294 AGCATAAGGAACAACTTTTCCTTCTTGCATTAAAACACAACCGAGT
1 AGCATAAGGAACAACTTTTCCTTCTTACATTAAAACACAACCGAGT
79140340 AGCATAAGGAACAACTTTTCCTTCTTACATTAAAACACAACCGAGT
1 AGCATAAGGAACAACTTTTCCTTCTTACATTAAAACACAACCGAGT
79140386 CCATTCAACG
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.38, C:0.24, G:0.12, T:0.26
Consensus pattern (46 bp):
AGCATAAGGAACAACTTTTCCTTCTTACATTAAAACACAACCGAGT
Found at i:79142513 original size:46 final size:46
Alignment explanation
Indices: 79142446--79142666 Score: 263
Period size: 46 Copynumber: 4.8 Consensus size: 46
79142436 TGTAACCCGC
*
79142446 CCATAAGTGAACTCGGGCTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
*
79142492 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
*
79142538 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C-A-TTCGCAT
* * ** * *
79142588 CTC-TCA---AACTCGGACTCAACTCAACGAGTTCGTACATTTGGAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
*
79142631 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
79142667 ATGCTCAACC
Statistics
Matches: 152, Mismatches: 12, Indels: 22
0.82 0.06 0.12
Matches are distributed among these distances:
42 3 0.02
43 6 0.04
44 1 0.01
46 106 0.70
47 25 0.16
48 1 0.01
49 1 0.01
50 6 0.04
51 3 0.02
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
Found at i:79142641 original size:93 final size:93
Alignment explanation
Indices: 79142501--79142670 Score: 277
Period size: 93 Copynumber: 1.8 Consensus size: 93
79142491 TCCATAAGTG
* *
79142501 AACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
79142566 GAGCTCGGATGCCTAGTTACATCTCTCA
66 GAGCTCGGATGCCTAGTTACATCTCTCA
* * * *
79142594 AACTCGGACTCAACTCAACGAGTTCGTACATTTGGATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
*
79142659 GAGTTCGGATGC
66 GAGCTCGGATGC
79142671 TCAACCATCC
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGCTCGGATGCCTAGTTACATCTCTCA
Found at i:79151913 original size:17 final size:18
Alignment explanation
Indices: 79151880--79151927 Score: 80
Period size: 18 Copynumber: 2.7 Consensus size: 18
79151870 GTTTTAGCTT
79151880 AGTTTTTGATGATTTTTA
1 AGTTTTTGATGATTTTTA
79151898 AGTTTTTGATGATTTTTA
1 AGTTTTTGATGATTTTTA
*
79151916 CGTTTTTG-TGAT
1 AGTTTTTGATGAT
79151928 CATTGCTTTG
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
17 4 0.14
18 25 0.86
ACGTcount: A:0.19, C:0.02, G:0.19, T:0.60
Consensus pattern (18 bp):
AGTTTTTGATGATTTTTA
Found at i:79155110 original size:43 final size:43
Alignment explanation
Indices: 79155063--79155251 Score: 272
Period size: 43 Copynumber: 4.4 Consensus size: 43
79155053 TTTAACGTAA
* *
79155063 TGGCACTAAGTGTGCGATACAATTATAGTTTCGGCT-ACTAAGT
1 TGGCACTAAGTGTGCGATACAATTATAGCTTCGGCTAATTAA-T
* * * *
79155106 TGGCACTAAGTGTGCAATATAATTATAGCTTCAGCTTATTAAT
1 TGGCACTAAGTGTGCGATACAATTATAGCTTCGGCTAATTAAT
*
79155149 TGGCACTAAGTGTGCGATACAATTATAGCTTCCGCTAATTAAT
1 TGGCACTAAGTGTGCGATACAATTATAGCTTCGGCTAATTAAT
* *
79155192 TAGCACTAAGTGTGCGATACAATTATAGCTTCGGTTAATTAAT
1 TGGCACTAAGTGTGCGATACAATTATAGCTTCGGCTAATTAAT
*
79155235 TAGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
79155252 GTTCGTTGAA
Statistics
Matches: 133, Mismatches: 12, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
43 129 0.97
44 4 0.03
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33
Consensus pattern (43 bp):
TGGCACTAAGTGTGCGATACAATTATAGCTTCGGCTAATTAAT
Found at i:79161734 original size:24 final size:24
Alignment explanation
Indices: 79161707--79161769 Score: 126
Period size: 24 Copynumber: 2.6 Consensus size: 24
79161697 CTTATTATGT
79161707 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
79161731 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
79161755 TCGCACACATAGTGC
1 TCGCACACATAGTGC
79161770 ATTTGAGATT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.35, C:0.27, G:0.17, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:79165762 original size:25 final size:25
Alignment explanation
Indices: 79165732--79165782 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
79165722 CAAAAATATT
*
79165732 CAAGAAAAGCCATTAAAATCATTTA
1 CAAGAAAAGCCATTAAAATCACTTA
79165757 CAAGAAAAGCCATTAAAATCACTTA
1 CAAGAAAAGCCATTAAAATCACTTA
79165782 C
1 C
79165783 TTGTGAAGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.51, C:0.20, G:0.08, T:0.22
Consensus pattern (25 bp):
CAAGAAAAGCCATTAAAATCACTTA
Found at i:79168106 original size:50 final size:50
Alignment explanation
Indices: 79168003--79168109 Score: 133
Period size: 50 Copynumber: 2.1 Consensus size: 50
79167993 ATTTCAATCT
* *
79168003 TTTTCATTAATACATGATATAGTTCATTTGAACACTTACCGTTCCTTTCC
1 TTTTCATTAATACATGATATAGTTCATTTGAACACTTACCATTCCTTTAC
* * * ** * *
79168053 TTTTCATTAGTACTTGATATAGTTCTTTTGAATGCTTATCATTCTTTTAC
1 TTTTCATTAATACATGATATAGTTCATTTGAACACTTACCATTCCTTTAC
79168103 TTTTCAT
1 TTTTCAT
79168110 ACTTGTTGAA
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.23, C:0.18, G:0.08, T:0.50
Consensus pattern (50 bp):
TTTTCATTAATACATGATATAGTTCATTTGAACACTTACCATTCCTTTAC
Found at i:79178788 original size:46 final size:47
Alignment explanation
Indices: 79178662--79178791 Score: 144
Period size: 47 Copynumber: 2.8 Consensus size: 47
79178652 TCGGGCGTTT
*
79178662 GCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT
1 GCATCCA-AAGTGAACTCGGACTCAACTCAACGAGTTCGGATG-CTA-TC
* *
79178712 ACATCTC--A-CGAACTCGGACTCAACTCAACGAGTTCGGATG-T-TC
1 GCATC-CAAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTATC
*
79178755 GCATCCAGAAGTGAACTCGGACTTAACTCAACGAGTT
1 GCATCCA-AAGTGAACTCGGACTCAACTCAACGAGTT
79178792 TAGATGCCCA
Statistics
Matches: 69, Mismatches: 6, Indels: 14
0.78 0.07 0.16
Matches are distributed among these distances:
42 1 0.01
43 5 0.07
45 2 0.03
46 24 0.35
47 31 0.45
48 1 0.01
50 4 0.06
51 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (47 bp):
GCATCCAAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTATC
Found at i:79181575 original size:795 final size:793
Alignment explanation
Indices: 79180374--79181817 Score: 2207
Period size: 795 Copynumber: 1.8 Consensus size: 793
79180364 GCAATTAAAT
* * * * *
79180374 TTGTAACACCCTGTACCCGAGACCGTTACCGGAGTCGAACACGAGGTGCTAACCGACTAATTCAT
1 TTGTAACACCCCGTACCCGAGACCGTTACCGGAATCGAACACAAGGTGCTAACAGACTAATTAAT
*** * * * *
79180439 TTACTCTCACAGTCCATTTTAAAAATTTTCCAGGCAGTTGGCTAACTGCATCACTGTAACTTTAA
66 TTA-TCTCACAGTCCATAAAAAAAATTTTCCAGACAGCTGGATAACTGCATCACTGTAACCTTAA
* * *
79180504 AAATCATATCTTGAGTTCCAAAACTCGAAAACCAGTTTCATAATTTTTCCCTGAAACTAGACTCA
130 AAATCATATCTTGAGTTCCAAAACTCAAAAACCAGTTTCATAAATTTTACCTGAAACTAGACTCA
* * * **
79180569 TATATGCATCTACAAATTTATTTCTAGAATTTTTGGTCGGGCCAATTAGTACAGTTTATTAGTTA
195 TATATCCATCAACAAATTTATTTATAGAATTTTTGGTCGGGAAAATTAGTACAGTTTATTAGTTA
** * *
79180634 AAGTCTCCCCTGTTACAGGGTGCGACTACACTGACCTTCATGCATTACAACCTGGATATCTCCCT
260 AAGTCTCCCCTAATACAGGGTGAGACTACACTGACCTTCACGCATTACAACCTGGATATCTCCCT
*
79180699 GTACAGGGATTCAATACTGATGCCGTTTGTTTCTATAGAAACTAGACTCAAATAGAAATCTATAC
325 GTACAGGGATTCAATACTGATGCCGTTTGTTTCTATAGAAACTAGACTCAAAGAGAAATCTATAC
* *
79180764 ATATATGGAATGACTCCTAATTATCTCTGGTTAATTTACAATGAATTTCCAAAGTCAGAACAGGG
390 ATATATGGAATGACTCCTAATTATCTCCGGTAAATTTACAATGAATTTCCAAAGTCAGAACAGGG
79180829 AATCCAGAAACCGTTCTGGACCTGTTTCACGAGAACCTAAATATCTCTTAACATACAACTCATAT
455 AATCCAGAAACCGTTCTGGACCTGTTTCACGAGAACCTAAATATCTCTTAACATACAACTCATAT
*
79180894 GACCGTTTCGTTTCTTCCATATGAAAGTAGATTCATCAAGGTTAATTTAAATAATTTATTCACTA
520 GACCGTTTCATTTCTTCCATATGAAAGTAGATTCATCAAGGTTAATTTAAATAATTTATTCACTA
*
79180959 TTTAATTCCATTCCTACTATTTTTAGTGATTTTTCACATCCACATCACTGCTGCTGCCAGCATCT
585 TTTAATACCATTCCTACTATTTTTAGTGA-TTTTCACATCCACATCACTGCTGCTGCCAGCATCT
79181024 ATTTCTAGGGTAGACTTTCTCTAACACATAGTTTCTATGATTCAACTAACCCTTTTGCATATATA
649 ATTTCTAGGGTAGACTTTCTCTAACACATAGTTTCTATGATTCAACTAACCCTTTTGCATATATA
79181089 GTTCAAAATATAATCATGATGAACCATTCTAATGGCTGATCATTGCCAAACATTTCCATGCCTCT
714 GTTCAAAATATAATCATGATGAACCATTCTAATGGCTGATCATTGCCAAACATTTCCATGCCTCT
79181154 TAATGAGCATATACA
779 TAATGAGCATATACA
*
79181169 TTGTAACACCCCGTACCCGAGTCCGTTACCGGAATCGAACACAAGGTGC-ACACAGACTTAACTT
1 TTGTAACACCCCGTACCCGAGACCGTTACCGGAATCGAACACAAGGTGCTA-ACAGAC-TAA-TT
**
79181233 AATTGT-T-TCACAGTCCATAAAAAAAAATTTT-CAGACTAGCTGGAT-ACTGCATCACTGTCGC
63 AATT-TATCTCACAGTCCAT-AAAAAAAATTTTCCAGAC-AGCTGGATAACTGCATCACTGTAAC
** * * *
79181294 CTTAAAAATCATATCTTGAGTTTTAAAGCTCAAAAATCAGTTTCGTAAATTTTACCTGAAACTAG
125 CTTAAAAATCATATCTTGAGTTCCAAAACTCAAAAACCAGTTTCATAAATTTTACCTGAAACTAG
* * *
79181359 ACTCATA-ATTCCATCAACATATTTTTTTATAGAATTTTTGGTCGGGAAAATTAGTACATTTTAT
190 ACTCATATA-TCCATCAACAAATTTATTTATAGAATTTTTGGTCGGGAAAATTAGTACAGTTTAT
* * * **
79181423 TAGTTAAAGTCTCCCCTAATCCAGGGTTAGACTACACTGACCTTCACGCATTACGAGTTGGATAT
254 TAGTTAAAGTCTCCCCTAATACAGGGTGAGACTACACTGACCTTCACGCATTACAACCTGGATAT
* ** * *
79181488 CTCCCTGTACAGGGCTTCAATACTGATGTTGTTTGTTTCTATAGAAACTAGACTCAGAGAGGAAT
319 CTCCCTGTACAGGGATTCAATACTGATGCCGTTTGTTTCTATAGAAACTAGACTCAAAGAGAAAT
* *
79181553 CTATACATATATGGCATGACTCCTAATTATCTCCGGTAAATTTACAATGAATTTCCAAAGTCGGA
384 CTATACATATATGGAATGACTCCTAATTATCTCCGGTAAATTTACAATGAATTTCCAAAGTCAGA
* * * * * *
79181618 ACAGGGGATCCAGAAACTGTTCTGGCCCTGTTTCACGAGAACTTTAATATCTCTTAACATATAAC
449 ACAGGGAATCCAGAAACCGTTCTGGACCTGTTTCACGAGAACCTAAATATCTCTTAACATACAAC
* * *
79181683 TCATATGACCGTTTCATTTCTTCCATATGAAATTAGATTCATCAAGGTTCATTTACATAATTTAT
514 TCATATGACCGTTTCATTTCTTCCATATGAAAGTAGATTCATCAAGGTTAATTTAAATAATTTAT
*
79181748 TCACTATTTAATACCATTCCTACTATTTTTAGTGATTTTCACATCCACATCACTGCTGCTGTCAG
579 TCACTATTTAATACCATTCCTACTATTTTTAGTGATTTTCACATCCACATCACTGCTGCTGCCAG
79181813 CATCT
644 CATCT
79181818 GCCTTTAAGG
Statistics
Matches: 580, Mismatches: 62, Indels: 15
0.88 0.09 0.02
Matches are distributed among these distances:
794 36 0.06
795 519 0.89
796 19 0.03
797 5 0.01
798 1 0.00
ACGTcount: A:0.31, C:0.22, G:0.14, T:0.34
Consensus pattern (793 bp):
TTGTAACACCCCGTACCCGAGACCGTTACCGGAATCGAACACAAGGTGCTAACAGACTAATTAAT
TTATCTCACAGTCCATAAAAAAAATTTTCCAGACAGCTGGATAACTGCATCACTGTAACCTTAAA
AATCATATCTTGAGTTCCAAAACTCAAAAACCAGTTTCATAAATTTTACCTGAAACTAGACTCAT
ATATCCATCAACAAATTTATTTATAGAATTTTTGGTCGGGAAAATTAGTACAGTTTATTAGTTAA
AGTCTCCCCTAATACAGGGTGAGACTACACTGACCTTCACGCATTACAACCTGGATATCTCCCTG
TACAGGGATTCAATACTGATGCCGTTTGTTTCTATAGAAACTAGACTCAAAGAGAAATCTATACA
TATATGGAATGACTCCTAATTATCTCCGGTAAATTTACAATGAATTTCCAAAGTCAGAACAGGGA
ATCCAGAAACCGTTCTGGACCTGTTTCACGAGAACCTAAATATCTCTTAACATACAACTCATATG
ACCGTTTCATTTCTTCCATATGAAAGTAGATTCATCAAGGTTAATTTAAATAATTTATTCACTAT
TTAATACCATTCCTACTATTTTTAGTGATTTTCACATCCACATCACTGCTGCTGCCAGCATCTAT
TTCTAGGGTAGACTTTCTCTAACACATAGTTTCTATGATTCAACTAACCCTTTTGCATATATAGT
TCAAAATATAATCATGATGAACCATTCTAATGGCTGATCATTGCCAAACATTTCCATGCCTCTTA
ATGAGCATATACA
Found at i:79182585 original size:37 final size:36
Alignment explanation
Indices: 79182535--79182621 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
79182525 TACGAAGTCT
79182535 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
79182571 GTACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
79182608 TCACCCGGAACATA
1 T-ACCCGG-ACATA
79182622 TTTCCAAGTT
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 42 0.88
38 5 0.10
ACGTcount: A:0.26, C:0.33, G:0.20, T:0.21
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:79182755 original size:49 final size:49
Alignment explanation
Indices: 79182690--79182939 Score: 421
Period size: 49 Copynumber: 5.1 Consensus size: 49
79182680 TTTACCACAT
* * *
79182690 ATATATATACACTTTCACATTCATCACGTCGGGCATTAGGCCTCATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
79182739 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
*
79182788 ATATATATACATTTTCATATTCATCACATCGGCCATTAGGCCTCATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
* * *
79182837 ATATATATATA-TTTCATATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
*
79182885 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
79182934 ATATAT
1 ATATAT
79182940 TATTATGTAC
Statistics
Matches: 192, Mismatches: 8, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
48 46 0.24
49 146 0.76
ACGTcount: A:0.31, C:0.26, G:0.09, T:0.34
Consensus pattern (49 bp):
ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
Done.