Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 251 of 318
Found at i:79182896 original size:97 final size:98
Alignment explanation
Indices: 79182690--79182939 Score: 421
Period size: 97 Copynumber: 2.6 Consensus size: 98
79182680 TTTACCACAT
* * *
79182690 ATATATATACACTTTCACATTCATCACGTCGGGCATTAGGCCTCATCACATATATATACATTTTC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATATACATTTTC
79182755 ACATTCATCACATCGGCCATTAGGCCTCATCAC
66 ACATTCATCACATCGGCCATTAGGCCTCATCAC
* *
79182788 ATATATATACATTTTCATATTCATCACATCGGCCATTAGGCCTCATCACATATATATATA-TTTC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATATACATTTTC
* *
79182852 ATATTCATCACATCGGCCATTAGGCCTTATCAC
66 ACATTCATCACATCGGCCATTAGGCCTCATCAC
*
79182885 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATAT
79182940 TATTATGTAC
Statistics
Matches: 143, Mismatches: 9, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
97 88 0.62
98 55 0.38
ACGTcount: A:0.31, C:0.26, G:0.09, T:0.34
Consensus pattern (98 bp):
ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATATACATTTTC
ACATTCATCACATCGGCCATTAGGCCTCATCAC
Found at i:79186633 original size:40 final size:40
Alignment explanation
Indices: 79186564--79186714 Score: 241
Period size: 40 Copynumber: 3.8 Consensus size: 40
79186554 CCAGCATGAT
* * *
79186564 TGCTCTTCGGGACCTAG-CCCGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
79186603 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
79186643 TGCTCTTCGGAAATTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
79186683 TGCTCTTCGGAACTTAGTCCGGATATATCACT
1 TGCTCTTCGGAACTTAGTCCGGATACATCACT
79186715 CTCAATTCTC
Statistics
Matches: 103, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 15 0.15
40 88 0.85
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:79188578 original size:37 final size:36
Alignment explanation
Indices: 79188528--79188614 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
79188518 TACGAAGTCT
79188528 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
79188564 GTACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
79188601 TCACCCGGAACATA
1 T-ACCCGG-ACATA
79188615 TTTCCAAGTT
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 42 0.88
38 5 0.10
ACGTcount: A:0.26, C:0.33, G:0.20, T:0.21
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:79188750 original size:49 final size:49
Alignment explanation
Indices: 79188683--79188883 Score: 350
Period size: 49 Copynumber: 4.1 Consensus size: 49
79188673 TTTACCACAT
* * *
79188683 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTCATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
79188732 ATATATATACATTTTCACATTCATCACGTC-GACATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
79188780 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
79188829 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
79188878 ATATAT
1 ATATAT
79188884 TATTATGTAC
Statistics
Matches: 146, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
48 45 0.31
49 101 0.69
ACGTcount: A:0.31, C:0.26, G:0.08, T:0.34
Consensus pattern (49 bp):
ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:79188817 original size:97 final size:98
Alignment explanation
Indices: 79188683--79188883 Score: 350
Period size: 97 Copynumber: 2.1 Consensus size: 98
79188673 TTTACCACAT
*
79188683 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTCATCACATATATATACATTTTC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATATACATTTTC
*
79188748 ACATTCATCACGTC-GACATTAGGCCTTATCAC
66 ACATTCATCACATCGGACATTAGGCCTTATCAC
* *
79188780 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATATACATTTTC
*
79188845 ACATTCATCACATCGGCCATTAGGCCTTATCAC
66 ACATTCATCACATCGGACATTAGGCCTTATCAC
79188878 ATATAT
1 ATATAT
79188884 TATTATGTAC
Statistics
Matches: 98, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
97 75 0.77
98 23 0.23
ACGTcount: A:0.31, C:0.26, G:0.08, T:0.34
Consensus pattern (98 bp):
ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATATACATTTTC
ACATTCATCACATCGGACATTAGGCCTTATCAC
Found at i:79192541 original size:40 final size:40
Alignment explanation
Indices: 79192497--79192648 Score: 241
Period size: 40 Copynumber: 3.8 Consensus size: 40
79192487 CCAGCATGAT
* * * *
79192497 TGCTCTTCGGGACCTAGCCCAGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
79192537 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
79192577 TGCTCTTCGGAAATTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
79192617 TGCTCTTCGGAACTTAGTCCGGATATATCACT
1 TGCTCTTCGGAACTTAGTCCGGATACATCACT
79192649 CTCAATTCTC
Statistics
Matches: 103, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 103 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:79194517 original size:37 final size:36
Alignment explanation
Indices: 79194467--79194553 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
79194457 TACGAAGTCT
79194467 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
79194503 GTACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
79194540 TCACCCGGAACATA
1 T-ACCCGG-ACATA
79194554 TTTCCAAGTT
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 42 0.88
38 5 0.10
ACGTcount: A:0.26, C:0.33, G:0.20, T:0.21
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:79194687 original size:49 final size:49
Alignment explanation
Indices: 79194622--79194822 Score: 368
Period size: 49 Copynumber: 4.1 Consensus size: 49
79194612 TTTACCACGT
* * *
79194622 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTCATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
79194671 ATATATATACATTTTCACATTCATCACATC-GCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
79194719 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
79194768 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
79194817 ATATAT
1 ATATAT
79194823 TATTATGTAC
Statistics
Matches: 148, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
48 47 0.32
49 101 0.68
ACGTcount: A:0.31, C:0.27, G:0.08, T:0.34
Consensus pattern (49 bp):
ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:79194756 original size:97 final size:98
Alignment explanation
Indices: 79194622--79194822 Score: 368
Period size: 97 Copynumber: 2.1 Consensus size: 98
79194612 TTTACCACGT
*
79194622 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTCATCACATATATATACATTTTC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATATACATTTTC
79194687 ACATTCATCACATC-GCCATTAGGCCTTATCAC
66 ACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
79194719 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATATACATTTTC
79194784 ACATTCATCACATCGGCCATTAGGCCTTATCAC
66 ACATTCATCACATCGGCCATTAGGCCTTATCAC
79194817 ATATAT
1 ATATAT
79194823 TATTATGTAC
Statistics
Matches: 100, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
97 76 0.76
98 24 0.24
ACGTcount: A:0.31, C:0.27, G:0.08, T:0.34
Consensus pattern (98 bp):
ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATATACATTTTC
ACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:79197630 original size:37 final size:37
Alignment explanation
Indices: 79197580--79197663 Score: 143
Period size: 37 Copynumber: 2.2 Consensus size: 37
79197570 CGAAGTCTTA
79197580 CCGGACATAATCTCCACACGTAGTCATCGGGTCGT-AC
1 CCGGACATAATCTCCACACGTAGTCATCGGGTC-TCAC
79197617 CCGGACATAATCTCCACACGTAGTCATCGGGTCTCAC
1 CCGGACATAATCTCCACACGTAGTCATCGGGTCTCAC
79197654 CCGGAACATA
1 CCGG-ACATA
79197664 TTTCCAAGTT
Statistics
Matches: 45, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 39 0.87
38 5 0.11
ACGTcount: A:0.26, C:0.33, G:0.20, T:0.20
Consensus pattern (37 bp):
CCGGACATAATCTCCACACGTAGTCATCGGGTCTCAC
Found at i:79197799 original size:49 final size:49
Alignment explanation
Indices: 79197732--79197933 Score: 350
Period size: 49 Copynumber: 4.1 Consensus size: 49
79197722 TTTACCACAT
* * *
79197732 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
79197781 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
79197830 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
** *
79197879 ATACGTATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
79197928 ATATAT
1 ATATAT
79197934 TATTATGTAC
Statistics
Matches: 145, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
49 145 1.00
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.33
Consensus pattern (49 bp):
ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
Found at i:79200741 original size:37 final size:37
Alignment explanation
Indices: 79200691--79200772 Score: 128
Period size: 37 Copynumber: 2.2 Consensus size: 37
79200681 TACGAAGTCT
* *
79200691 TACCCGGACATAATCTCCATACGTAGTCATCGGGTCG
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTCA
*
79200728 TACCCGGACATAATCTCCACACGTTGTCATCGGGTCA
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTCA
*
79200765 CACCCGGA
1 TACCCGGA
79200773 ACATGTTTCC
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.24, C:0.33, G:0.21, T:0.22
Consensus pattern (37 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTCA
Found at i:79200912 original size:49 final size:49
Alignment explanation
Indices: 79200846--79201047 Score: 359
Period size: 49 Copynumber: 4.1 Consensus size: 49
79200836 TTTACCACAT
* * *
79200846 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
79200895 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
79200944 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
* *
79200993 ATATGTATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
79201042 ATATAT
1 ATATAT
79201048 TATTATGTAC
Statistics
Matches: 147, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 147 1.00
ACGTcount: A:0.30, C:0.27, G:0.09, T:0.34
Consensus pattern (49 bp):
ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
Found at i:79207952 original size:40 final size:40
Alignment explanation
Indices: 79207893--79208034 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
79207883 AAATTGAATG
* * *
79207893 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
79207933 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
79207973 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
79208013 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
79208035 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:79208035 original size:40 final size:39
Alignment explanation
Indices: 79207932--79208060 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
79207922 TGCTGGAAAT
* * *
79207932 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
79207972 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
79208012 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
79208052 TATATCCGG
1 TATATCCGG
79208061 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:79213779 original size:13 final size:13
Alignment explanation
Indices: 79213763--79213795 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
79213753 TTTAATTAAA
*
79213763 TTAGTTAATTAGT
1 TTAGATAATTAGT
79213776 TTAGATAATTAGT
1 TTAGATAATTAGT
79213789 TTA-ATAA
1 TTAGATAA
79213796 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:79214572 original size:21 final size:21
Alignment explanation
Indices: 79214547--79214586 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
79214537 AATGGTTTCA
79214547 TAAAATAGAAAT-AATAAAAGT
1 TAAAA-AGAAATGAATAAAAGT
*
79214568 TAAAAATAAATGAATAAAA
1 TAAAAAGAAATGAATAAAA
79214587 TATGTTTGAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.70, C:0.00, G:0.07, T:0.23
Consensus pattern (21 bp):
TAAAAAGAAATGAATAAAAGT
Found at i:79216656 original size:47 final size:47
Alignment explanation
Indices: 79216599--79217268 Score: 1045
Period size: 47 Copynumber: 14.3 Consensus size: 47
79216589 ACAAGATATG
79216599 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
79216646 TATATATGATAAAGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
79216693 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
79216740 TATATGAGATAAGACCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
79216787 TATATGAGATAAGACCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
79216834 TATATGTGATAAAGCCTAATGACCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
79216881 TATATGTGATAAGACCGAATGGCCAACGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
79216928 TATATGTGGTAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* * **
79216975 TATATGAGATAA-ACCTAATGGCTGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
79217021 TATATGTGATAAAGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
79217068 TATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
79217115 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* * * * *
79217162 TATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAGGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
79217209 TATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
79217256 TAAATGTGATAAG
1 TATATGTGATAAG
79217269 TCCCGAAGGG
Statistics
Matches: 572, Mismatches: 50, Indels: 2
0.92 0.08 0.00
Matches are distributed among these distances:
46 41 0.07
47 531 0.93
ACGTcount: A:0.35, C:0.09, G:0.28, T:0.28
Consensus pattern (47 bp):
TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:79222074 original size:20 final size:21
Alignment explanation
Indices: 79222049--79222088 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 21
79222039 CTCTCTGCGT
79222049 CACACGCCCGTGC-TCGCCAC
1 CACACGCCCGTGCATCGCCAC
79222069 CACACGCCCGTGCATCGCCA
1 CACACGCCCGTGCATCGCCA
79222089 TACAACAGCC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 13 0.68
21 6 0.32
ACGTcount: A:0.17, C:0.53, G:0.20, T:0.10
Consensus pattern (21 bp):
CACACGCCCGTGCATCGCCAC
Found at i:79223607 original size:32 final size:31
Alignment explanation
Indices: 79223561--79223633 Score: 85
Period size: 32 Copynumber: 2.3 Consensus size: 31
79223551 TGAATCCTCC
79223561 TATTTT-TTTATTTATTCTTATTCTTATTTT
1 TATTTTATTTATTTATTCTTATTCTTATTTT
* * *
79223591 TATTTTATTTAATTTATTTTTATTTTTCTTTT
1 TATTTTATTT-ATTTATTCTTATTCTTATTTT
*
79223623 GATTTTTATTT
1 TA-TTTTATTT
79223634 TCATTTAAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
30 6 0.17
31 3 0.08
32 19 0.53
33 8 0.22
ACGTcount: A:0.18, C:0.04, G:0.01, T:0.77
Consensus pattern (31 bp):
TATTTTATTTATTTATTCTTATTCTTATTTT
Found at i:79223614 original size:26 final size:27
Alignment explanation
Indices: 79223566--79223627 Score: 81
Period size: 26 Copynumber: 2.3 Consensus size: 27
79223556 CCTCCTATTT
*
79223566 TTTTATTTATTCTTATTCTTATTTTTA
1 TTTTATTTAATCTTATTCTTATTTTTA
* *
79223593 TTTTATTTAAT-TTATTTTTATTTTTC
1 TTTTATTTAATCTTATTCTTATTTTTA
79223619 TTTTGATTT
1 TTTT-ATTT
79223628 TTATTTTCAT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
26 17 0.55
27 14 0.45
ACGTcount: A:0.18, C:0.05, G:0.02, T:0.76
Consensus pattern (27 bp):
TTTTATTTAATCTTATTCTTATTTTTA
Found at i:79223629 original size:7 final size:6
Alignment explanation
Indices: 79223561--79223639 Score: 63
Period size: 6 Copynumber: 12.8 Consensus size: 6
79223551 TGAATCCTCC
* *
79223561 TATTTT T-TTATT TATTCT TATTCT TATTTT TA-TTT TATTTAATT TATTTT
1 TATTTT TATT-TT TATTTT TATTTT TATTTT TATTTT TA-TT--TT TATTTT
* * *
79223611 TATTTT TCTTTT GATTTT TATTTT CATTT
1 TATTTT TATTTT TATTTT TATTTT TATTT
79223640 AAATTTTATT
Statistics
Matches: 60, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
5 7 0.12
6 44 0.73
7 3 0.05
8 2 0.03
9 4 0.07
ACGTcount: A:0.18, C:0.05, G:0.01, T:0.76
Consensus pattern (6 bp):
TATTTT
Found at i:79223645 original size:18 final size:18
Alignment explanation
Indices: 79223586--79223646 Score: 54
Period size: 18 Copynumber: 3.3 Consensus size: 18
79223576 TCTTATTCTT
79223586 ATTTTTATTTT-ATTTAA
1 ATTTTTATTTTCATTTAA
**
79223603 TTTATTTTTATTTTTC-TTTTG
1 ---ATTTTTA-TTTTCATTTAA
79223624 ATTTTTATTTTCATTTAA
1 ATTTTTATTTTCATTTAA
79223642 ATTTT
1 ATTTT
79223647 ATTATTTTCT
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
17 5 0.15
18 15 0.44
20 7 0.21
21 7 0.21
ACGTcount: A:0.21, C:0.03, G:0.02, T:0.74
Consensus pattern (18 bp):
ATTTTTATTTTCATTTAA
Found at i:79226504 original size:17 final size:18
Alignment explanation
Indices: 79226462--79226510 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
79226452 AGTTGAAAAG
79226462 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
79226481 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
79226498 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
79226511 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:79227398 original size:40 final size:40
Alignment explanation
Indices: 79227332--79227498 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
79227322 AAATTGAATG
* * *
79227332 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
79227371 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
79227411 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
79227451 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
79227491 ATATCCGG
1 ATATCCGG
79227499 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:79236137 original size:27 final size:28
Alignment explanation
Indices: 79236106--79236205 Score: 103
Period size: 27 Copynumber: 3.5 Consensus size: 28
79236096 ATAATAAGTC
*
79236106 CGCACACTTAGTGCTATAAAATC-AGCT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
79236133 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
79236161 CGCACACTTAGTGCTGTACAAATTTTAAACC
1 CGCACACTTAGTGCTATA-AAA--TCAAACT
79236192 CGCACACTTAGTGC
1 CGCACACTTAGTGC
79236206 CAATCTTGTT
Statistics
Matches: 59, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
27 21 0.36
28 18 0.31
29 2 0.03
31 18 0.31
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:79238262 original size:40 final size:40
Alignment explanation
Indices: 79238195--79238339 Score: 123
Period size: 40 Copynumber: 3.6 Consensus size: 40
79238185 AAATTGAATA
* * *
79238195 ATATCCGGGCTAAG-CCCTGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCC-GAAGGCAATTATGCTAGAAACT
* * ***
79238235 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGAAACT
* * ** *
79238275 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-ATGCTAGAAACT
* *
79238315 CTATCCGGGCTAAGACTCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
79238340 TTTGTGCACG
Statistics
Matches: 87, Mismatches: 15, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
39 3 0.03
40 81 0.93
41 3 0.03
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGAAACT
Found at i:79238340 original size:40 final size:39
Alignment explanation
Indices: 79238234--79238362 Score: 143
Period size: 40 Copynumber: 3.2 Consensus size: 39
79238224 TGCTGGAAAT
* * *
79238234 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
79238274 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* * *
79238314 TCTATCCGGGCTAAGACTCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
79238354 TATATCCGG
1 TATATCCGG
79238363 TTATATTCCG
Statistics
Matches: 77, Mismatches: 9, Indels: 6
0.84 0.10 0.07
Matches are distributed among these distances:
39 4 0.05
40 71 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:79244007 original size:40 final size:40
Alignment explanation
Indices: 79243948--79244089 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
79243938 AAATTGAATA
* * *
79243948 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
79243988 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
79244028 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
79244068 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
79244090 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:79244090 original size:40 final size:39
Alignment explanation
Indices: 79243987--79244115 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
79243977 TGCTGGAAAT
* * *
79243987 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
79244027 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
79244067 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
79244107 TATATCCGG
1 TATATCCGG
79244116 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:79247541 original size:26 final size:26
Alignment explanation
Indices: 79247507--79247562 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
79247497 TGAAATTCCC
79247507 ATCACGGAACATTTACCTAACCCATT
1 ATCACGGAACATTTACCTAACCCATT
*
79247533 ATCATGGAACATTTACCTAACCCATT
1 ATCACGGAACATTTACCTAACCCATT
79247559 ATCA
1 ATCA
79247563 ATTTGTATCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.36, C:0.29, G:0.07, T:0.29
Consensus pattern (26 bp):
ATCACGGAACATTTACCTAACCCATT
Found at i:79250098 original size:20 final size:20
Alignment explanation
Indices: 79250073--79250124 Score: 56
Period size: 19 Copynumber: 2.6 Consensus size: 20
79250063 AGTCATACAC
79250073 TAAAATCAAATACA-TTAAAA
1 TAAAATCAAATA-ATTTAAAA
*
79250093 TAAAAT-TAATAATTTAAAA
1 TAAAATCAAATAATTTAAAA
79250112 -ATAAATCAAATAA
1 TA-AAATCAAATAA
79250125 AAATAACTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
18 2 0.07
19 14 0.52
20 11 0.41
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (20 bp):
TAAAATCAAATAATTTAAAA
Found at i:79254117 original size:25 final size:26
Alignment explanation
Indices: 79254074--79254130 Score: 64
Period size: 25 Copynumber: 2.2 Consensus size: 26
79254064 ATTATTGGTT
* *
79254074 TGGGCTAAGCCCAATTGAT-TCTGTTA
1 TGGGCTAAGCCCAAATGATAT-TGTAA
*
79254100 TGGGCTGA-CCCAAATGATATTGTAA
1 TGGGCTAAGCCCAAATGATATTGTAA
79254125 TGGGCT
1 TGGGCT
79254131 TTGGCCCACG
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
25 19 0.70
26 8 0.30
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.32
Consensus pattern (26 bp):
TGGGCTAAGCCCAAATGATATTGTAA
Found at i:79258121 original size:54 final size:55
Alignment explanation
Indices: 79258050--79258178 Score: 149
Period size: 54 Copynumber: 2.4 Consensus size: 55
79258040 CCCCAACTTC
**
79258050 TAAAACTTACTAAAATACCCTC-GGGTTATAAAATTA-TCAAAATACCC-CTAATTTG
1 TAAAA-TTACTAAAATACCCTCTGACTTATAAAATTACT-AAAATACCCTC-AATTTG
* * *
79258105 TAAAATTACTGAAATACCC-CTGACTTGTAAAATTACTAAAATACCCTCATTTTG
1 TAAAATTACTAAAATACCCTCTGACTTATAAAATTACTAAAATACCCTCAATTTG
*
79258159 TAAAATTACCAAAATACCCT
1 TAAAATTACTAAAATACCCT
79258179 TTGTAGTGTA
Statistics
Matches: 63, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
53 1 0.02
54 55 0.87
55 7 0.11
ACGTcount: A:0.42, C:0.21, G:0.06, T:0.31
Consensus pattern (55 bp):
TAAAATTACTAAAATACCCTCTGACTTATAAAATTACTAAAATACCCTCAATTTG
Found at i:79258178 original size:27 final size:26
Alignment explanation
Indices: 79258050--79258178 Score: 125
Period size: 27 Copynumber: 4.8 Consensus size: 26
79258040 CCCCAACTTC
** *
79258050 TAAAACTTACTAAAATACCCTCGGGTTA
1 TAAAA-TTACTAAAATACCCTC-ATTTG
*
79258078 TAAAATTA-TCAAAATACCCCTAATTTG
1 TAAAATTACT-AAAATA-CCCTCATTTG
* * *
79258105 TAAAATTACTGAAATACCCCTGACTTG
1 TAAAATTACTAAAATA-CCCTCATTTG
79258132 TAAAATTACTAAAATACCCTCATTTTG
1 TAAAATTACTAAAATACCCTCA-TTTG
*
79258159 TAAAATTACCAAAATACCCT
1 TAAAATTACTAAAATACCCT
79258179 TTGTAGTGTA
Statistics
Matches: 86, Mismatches: 11, Indels: 9
0.81 0.10 0.08
Matches are distributed among these distances:
26 6 0.07
27 70 0.81
28 10 0.12
ACGTcount: A:0.42, C:0.21, G:0.06, T:0.31
Consensus pattern (26 bp):
TAAAATTACTAAAATACCCTCATTTG
Found at i:79258216 original size:81 final size:81
Alignment explanation
Indices: 79258050--79258223 Score: 190
Period size: 81 Copynumber: 2.1 Consensus size: 81
79258040 CCCCAACTTC
* * * *
79258050 TAAAACTTACTAAAATACCCTCGGGTTATAAAATTATCAAAATACCCCTAATTTGTAAAATTACT
1 TAAAA-TTACTAAAATACCCTCAGGTTATAAAATTACCAAAATACCCCTAATGTGTAAAATTACC
*
79258115 GAAATACCCCTGACTTG
65 GAAATACCCCTGACTGG
** * * ** *
79258132 TAAAATTACTAAAATACCCTCATTTTGTAAAATTACCAAAATACCCTTTGTAGTGTAAAGTTACC
1 TAAAATTACTAAAATACCCTCAGGTTATAAAATTACCAAAATACCCCTAAT-GTGTAAAATTACC
79258197 GAAATACCCCT-A-TAGG
65 GAAATACCCCTGACT-GG
*
79258213 TAAAATGACTA
1 TAAAATTACTA
79258224 TTTTGCCCTT
Statistics
Matches: 77, Mismatches: 13, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
80 1 0.01
81 50 0.65
82 26 0.34
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (81 bp):
TAAAATTACTAAAATACCCTCAGGTTATAAAATTACCAAAATACCCCTAATGTGTAAAATTACCG
AAATACCCCTGACTGG
Found at i:79260202 original size:9 final size:9
Alignment explanation
Indices: 79260188--79260220 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
79260178 TGGGTTAAAT
79260188 TGAATTTTG
1 TGAATTTTG
79260197 TGAATTTTG
1 TGAATTTTG
*
79260206 TGTA-TTTG
1 TGAATTTTG
79260214 TGAATTT
1 TGAATTT
79260221 GGGGACTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
8 7 0.33
9 14 0.67
ACGTcount: A:0.21, C:0.00, G:0.21, T:0.58
Consensus pattern (9 bp):
TGAATTTTG
Found at i:79260657 original size:43 final size:44
Alignment explanation
Indices: 79260579--79260733 Score: 145
Period size: 43 Copynumber: 3.6 Consensus size: 44
79260569 GATTACCAAG
* * * *
79260579 ATGTGATTACATGTAAGACCATATGTAGCAAATTGGCATTGTAT
1 ATGTGATTACATGTAAGACCATATCTAGGACATTGGCATCGTAT
* *
79260623 -TGTGATTACGTGTAAGACCATGTCTAGGACATTGGCATCGT-T
1 ATGTGATTACATGTAAGACCATATCTAGGACATTGGCATCGTAT
* * * * * * * *
79260665 ATATGATTTCGTATAAGACCCTGTCTGGGACAATGGCATCG-AT
1 ATGTGATTACATGTAAGACCATATCTAGGACATTGGCATCGTAT
* *
79260708 ATGTGATAACATGTAAGACTATATCT
1 ATGTGATTACATGTAAGACCATATCT
79260734 GGGATATGGC
Statistics
Matches: 89, Mismatches: 20, Indels: 5
0.78 0.18 0.04
Matches are distributed among these distances:
42 1 0.01
43 88 0.99
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (44 bp):
ATGTGATTACATGTAAGACCATATCTAGGACATTGGCATCGTAT
Found at i:79262339 original size:50 final size:50
Alignment explanation
Indices: 79262264--79262387 Score: 167
Period size: 50 Copynumber: 2.5 Consensus size: 50
79262254 CTTAAGGTTT
* *
79262264 GGCACTTGGTGTTGAGGCATGTTACAAGAGGGATACTAGCGTACAGGCTA
1 GGCACTTGGTGCTGAGGCATGTTACAAGAGGGATACTAGCCTACAGGCTA
* ** * *
79262314 GGCACTTGGTGCTGAGGCGTGTTACAAGAGGGATGTTAGCCTACGGGTTA
1 GGCACTTGGTGCTGAGGCATGTTACAAGAGGGATACTAGCCTACAGGCTA
**
79262364 GGCACTTGGTGCCAAGGCATGTTA
1 GGCACTTGGTGCTGAGGCATGTTA
79262388 TCGATTGGCT
Statistics
Matches: 64, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
50 64 1.00
ACGTcount: A:0.23, C:0.17, G:0.35, T:0.25
Consensus pattern (50 bp):
GGCACTTGGTGCTGAGGCATGTTACAAGAGGGATACTAGCCTACAGGCTA
Found at i:79267289 original size:34 final size:34
Alignment explanation
Indices: 79267223--79267290 Score: 86
Period size: 34 Copynumber: 2.0 Consensus size: 34
79267213 CCTAGCTACA
*
79267223 GTCTCAATCTTCTAAAGTTTTCAGTTTTCCCTAAT
1 GTCTCAATCTTCTAAAG-TTTCAGTTTACCCTAAT
79267258 GTCTCAAT-TTCTACAA-TTTCAGTATTACCCTAA
1 GTCTCAATCTTCTA-AAGTTTCAGT-TTACCCTAA
79267291 CTACAGAATC
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
33 7 0.23
34 13 0.43
35 10 0.33
ACGTcount: A:0.26, C:0.24, G:0.07, T:0.43
Consensus pattern (34 bp):
GTCTCAATCTTCTAAAGTTTCAGTTTACCCTAAT
Found at i:79270196 original size:28 final size:28
Alignment explanation
Indices: 79270150--79270218 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
79270140 TTTAAAACCC
*
79270150 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
79270177 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
79270205 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
79270219 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:79271870 original size:20 final size:20
Alignment explanation
Indices: 79271847--79271884 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
79271837 CACATCCAAA
*
79271847 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
79271867 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
79271885 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:79278205 original size:28 final size:28
Alignment explanation
Indices: 79278159--79278227 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
79278149 TTTAAAACCC
*
79278159 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
79278186 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
79278214 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
79278228 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:79279879 original size:20 final size:20
Alignment explanation
Indices: 79279856--79279893 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
79279846 CACATCCAAA
*
79279856 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
79279876 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
79279894 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:79282575 original size:14 final size:15
Alignment explanation
Indices: 79282549--79282589 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
79282539 CAATTTGGTT
*
79282549 TATTTTTATTTTTAC
1 TATTTTTATTTTAAC
79282564 TATTTTTATTTTAAC
1 TATTTTTATTTTAAC
*
79282579 T-TATTTATTTT
1 TATTTTTATTTT
79282590 CGTGATTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
14 9 0.38
15 15 0.62
ACGTcount: A:0.22, C:0.05, G:0.00, T:0.73
Consensus pattern (15 bp):
TATTTTTATTTTAAC
Found at i:79289723 original size:28 final size:28
Alignment explanation
Indices: 79289675--79289771 Score: 169
Period size: 28 Copynumber: 3.5 Consensus size: 28
79289665 TTTAAAACCC
* *
79289675 TAGGGGT-ATATCAGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
79289702 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
79289730 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
79289758 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
79289772 TGATCTACGC
Statistics
Matches: 67, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
27 7 0.10
28 60 0.90
ACGTcount: A:0.20, C:0.10, G:0.26, T:0.44
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:79291424 original size:20 final size:20
Alignment explanation
Indices: 79291401--79291438 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
79291391 CACATCCAAA
*
79291401 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
79291421 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
79291439 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:79298086 original size:23 final size:22
Alignment explanation
Indices: 79298055--79298098 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
79298045 TTGATCGTAT
*
79298055 GTTTAGGTATGATTTTAGTTTAA
1 GTTTAGGTATGAATTTA-TTTAA
*
79298078 GTTTTGGTATGAATTTATTTA
1 GTTTAGGTATGAATTTATTTA
79298099 TGAATTGAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.25, C:0.00, G:0.20, T:0.55
Consensus pattern (22 bp):
GTTTAGGTATGAATTTATTTAA
Found at i:79302066 original size:40 final size:39
Alignment explanation
Indices: 79301940--79302105 Score: 149
Period size: 40 Copynumber: 4.2 Consensus size: 39
79301930 CGGAATATAA
79301940 CCGGATATAATC-ACGT-GCACAATGCCTTCGGGTCTTAGC
1 CCGGATATAA-CAAC-TAGCACAATGCCTTCGGGTCTTAGC
* * * *
79301979 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAACAACTAGCAC-AATGCCTTCGGGTCTTAGC
* * *
79302019 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTAGCACAA-TGCCTTCGGGTCTTAGC
*** * * *
79302059 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAACAACTAGCACAA-TGCCTTCGGGTCTTAGC
79302098 CCGGATAT
1 CCGGATAT
79302106 CATTCAATTT
Statistics
Matches: 105, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
38 1 0.01
39 30 0.29
40 74 0.70
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (39 bp):
CCGGATATAACAACTAGCACAATGCCTTCGGGTCTTAGC
Found at i:79302089 original size:80 final size:78
Alignment explanation
Indices: 79301956--79302105 Score: 196
Period size: 80 Copynumber: 1.9 Consensus size: 78
79301946 ATAATCACGT
*
79301956 GCACAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCCC
1 GCACAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCCC
79302021 GGATATAGCCACTA
65 GGATATAGCCACTA
* ** * *
79302035 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAA-TGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
79302098 CCGGATAT
63 CCGGATAT
79302106 CATTCAATTT
Statistics
Matches: 62, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 23 0.37
80 39 0.63
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (78 bp):
GCACAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCCG
GATATAGCCACTA
Found at i:79309512 original size:27 final size:27
Alignment explanation
Indices: 79309474--79309531 Score: 116
Period size: 27 Copynumber: 2.1 Consensus size: 27
79309464 TTTAAACCAA
79309474 CAAGGGGTAGTCCTATACATGCCATTT
1 CAAGGGGTAGTCCTATACATGCCATTT
79309501 CAAGGGGTAGTCCTATACATGCCATTT
1 CAAGGGGTAGTCCTATACATGCCATTT
79309528 CAAG
1 CAAG
79309532 TTCAACCAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (27 bp):
CAAGGGGTAGTCCTATACATGCCATTT
Found at i:79310087 original size:40 final size:39
Alignment explanation
Indices: 79309961--79310126 Score: 149
Period size: 40 Copynumber: 4.2 Consensus size: 39
79309951 CGGAATATAA
79309961 CCGGATATAATC-ACGT-GCACAATGCCTTCGGGTCTTAGC
1 CCGGATATAA-CAAC-TAGCACAATGCCTTCGGGTCTTAGC
* * * *
79310000 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAACAACTAGCAC-AATGCCTTCGGGTCTTAGC
* * *
79310040 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTAGCACAA-TGCCTTCGGGTCTTAGC
*** * * *
79310080 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAACAACTAGCACAA-TGCCTTCGGGTCTTAGC
79310119 CCGGATAT
1 CCGGATAT
79310127 CATTCAATTT
Statistics
Matches: 105, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
38 1 0.01
39 30 0.29
40 74 0.70
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (39 bp):
CCGGATATAACAACTAGCACAATGCCTTCGGGTCTTAGC
Found at i:79310110 original size:80 final size:78
Alignment explanation
Indices: 79309977--79310126 Score: 196
Period size: 80 Copynumber: 1.9 Consensus size: 78
79309967 ATAATCACGT
*
79309977 GCACAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCCC
1 GCACAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCCC
79310042 GGATATAGCCACTA
65 GGATATAGCCACTA
* ** * *
79310056 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAA-TGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
79310119 CCGGATAT
63 CCGGATAT
79310127 CATTCAATTT
Statistics
Matches: 62, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 23 0.37
80 39 0.63
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (78 bp):
GCACAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCCG
GATATAGCCACTA
Found at i:79317270 original size:67 final size:68
Alignment explanation
Indices: 79317153--79317352 Score: 198
Period size: 67 Copynumber: 3.0 Consensus size: 68
79317143 CACATGGTGA
* * * *
79317153 ACACTTAGTACCACCCATGTGACCTAGC--CAGT-TTATCTCGTAGCTCTCTTGTCTACATGGTG
1 ACACATAGAACCACCCATGCGACCTAGCTACA-TCATATCTCGTAGCTCTCTTGTCTACATGGTG
79317215 TCCT
65 TCCT
* * * * *
79317219 TCACCTGGAACCACGCATGCGACCTAGCTACAT-ATATCCCGTAGCTCTCTTGTCTACATGGTG-
1 ACACATAGAACCACCCATGCGACCTAGCTACATCATATCTCGTAGCTCTCTTGTCTACATGGTGT
79317282 --T
66 CCT
* * * *
79317283 ACACATAGTATCACCCATGCGACCTAGCTACATCATAATGTCTCGTAGCTCTCTTGTATACATGA
1 ACACATAGAACCACCCATGCGACCTAGCTACATCAT-A--TCTCGTAGCTCTCTTGTCTACATGG
79317348 TGTCC
63 TGTCC
79317353 ACTCAACACC
Statistics
Matches: 108, Mismatches: 17, Indels: 13
0.78 0.12 0.09
Matches are distributed among these distances:
64 28 0.26
65 2 0.02
66 23 0.21
67 29 0.27
68 26 0.24
ACGTcount: A:0.23, C:0.30, G:0.17, T:0.30
Consensus pattern (68 bp):
ACACATAGAACCACCCATGCGACCTAGCTACATCATATCTCGTAGCTCTCTTGTCTACATGGTGT
CCT
Found at i:79317369 original size:68 final size:64
Alignment explanation
Indices: 79317132--79317384 Score: 163
Period size: 68 Copynumber: 3.9 Consensus size: 64
79317122 CATAATTTTG
* * * * ** * * *
79317132 GCTCTCTTGTACACATGGTGAACACTTAGTACCACCCATGTGACCTAGC--CAGTTTATCTCGTA
1 GCTCTCTTGTATACATGATGTACACATAACACCACCCATGCGACCTAGCTACA-TATATCCCGTA
* * * * * *
79317195 GCTCTCTTGTCTACATGGTGTCCTTCACCTGGA-ACCACGCATGCGACCTAGCTACATATATCCC
1 GCTCTCTTGTATACATGATG---TACACAT-AACACCACCCATGCGACCTAGCTACATATATCCC
79317259 GTA
62 GTA
* * ** * *
79317262 GCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACATCATAATGTCTC
1 GCTCTCTTGTATACATGATGTACACATAACACCACCCATGCGACCTAGCTACAT-AT-A--TCCC
79317327 GTA
62 GTA
* * * *
79317330 GCTCTCTTGTATACATGATGTCCAC-TCAACACCATCCATGTGACCTACCTACATA
1 GCTCTCTTGTATACATGATGTACACAT-AACACCACCCATGCGACCTAGCTACATA
79317385 CCATCTGTAT
Statistics
Matches: 151, Mismatches: 27, Indels: 20
0.76 0.14 0.10
Matches are distributed among these distances:
63 18 0.12
64 27 0.18
65 2 0.01
66 22 0.15
67 31 0.21
68 51 0.34
ACGTcount: A:0.24, C:0.30, G:0.16, T:0.30
Consensus pattern (64 bp):
GCTCTCTTGTATACATGATGTACACATAACACCACCCATGCGACCTAGCTACATATATCCCGTA
Found at i:79318641 original size:24 final size:24
Alignment explanation
Indices: 79318590--79318707 Score: 179
Period size: 23 Copynumber: 5.0 Consensus size: 24
79318580 GCTTTATCAT
*
79318590 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
79318615 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
79318639 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
79318662 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
79318685 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
79318708 GCACTTCCTC
Statistics
Matches: 88, Mismatches: 3, Indels: 5
0.92 0.03 0.05
Matches are distributed among these distances:
23 46 0.52
24 30 0.34
25 12 0.14
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:79318779 original size:9 final size:9
Alignment explanation
Indices: 79318765--79318821 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
79318755 ATCTCATGTG
79318765 CATATCATA
1 CATATCATA
*
79318774 CATATCATGTG
1 CATATCA--TA
79318785 CATATCATA
1 CATATCATA
* *
79318794 CATGTCATGTG
1 CATATCA--TA
79318805 CATATCATA
1 CATATCATA
79318814 CATATCAT
1 CATATCAT
79318822 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:79318781 original size:20 final size:20
Alignment explanation
Indices: 79318753--79318823 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
79318743 GCATTTATGA
*
79318753 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
79318773 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
79318793 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
79318813 ACATATCATGT
1 ACATATCATGT
79318824 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:79318788 original size:11 final size:11
Alignment explanation
Indices: 79318758--79318812 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
79318748 TATGAACATC
79318758 TCATGTGCATA
1 TCATGTGCATA
*
79318769 TCA--TACATA
1 TCATGTGCATA
79318778 TCATGTGCATA
1 TCATGTGCATA
* *
79318789 TCA--TACATG
1 TCATGTGCATA
79318798 TCATGTGCATA
1 TCATGTGCATA
79318809 TCAT
1 TCAT
79318813 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:79318888 original size:25 final size:25
Alignment explanation
Indices: 79318860--79318907 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
79318850 ATATATAAAC
* *
79318860 CCTAGGGGTATAATGGTCATTTTGA
1 CCTAGGGGCAAAATGGTCATTTTGA
79318885 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGGGCAAAATGGTCATTTT
79318908 CATATTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAATGGTCATTTTGA
Found at i:79320128 original size:27 final size:27
Alignment explanation
Indices: 79320066--79320130 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
79320056 GGGCATATTC
79320066 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* *
79320093 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAGGGG-TATTACG
*
79320120 GTCTTTTTACC
1 GTCATTTTACC
79320131 TTTTAGGGGT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 32 0.97
28 1 0.03
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:79320214 original size:27 final size:27
Alignment explanation
Indices: 79320188--79320325 Score: 91
Period size: 27 Copynumber: 5.0 Consensus size: 27
79320178 ATCAACAAAC
*
79320188 CAAAGGTATTTCAGTAATTTTGTAAAC
1 CAAAGGTATTTCAGTAATTTTGTAAAT
* *
79320215 CAATGGTACTTCTA-TAATTTT-TACAAAGT
1 CAAAGGTATTTC-AGTAATTTTGT--AAA-T
* *
79320244 CAAAGGTATTTCTGTAACTTTGTAAAT
1 CAAAGGTATTTCAGTAATTTTGTAAAT
** ** **
79320271 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAAGGTATTTCAGTAATTTTGTAAAT
** * *
79320298 TGAGGGTATTTCGGTAATTTTGTAAAT
1 CAAAGGTATTTCAGTAATTTTGTAAAT
79320325 C
1 C
79320326 GAGGGTAAAA
Statistics
Matches: 84, Mismatches: 21, Indels: 12
0.72 0.18 0.10
Matches are distributed among these distances:
26 1 0.01
27 59 0.70
28 7 0.08
29 16 0.19
30 1 0.01
ACGTcount: A:0.32, C:0.10, G:0.17, T:0.41
Consensus pattern (27 bp):
CAAAGGTATTTCAGTAATTTTGTAAAT
Found at i:79320289 original size:56 final size:54
Alignment explanation
Indices: 79320182--79320330 Score: 147
Period size: 56 Copynumber: 2.7 Consensus size: 54
79320172 TGGTAAATCA
* * **
79320182 ACAAACCAAAGGTATTTCAGTAATTTTGTAAACCAATGGTACTTCTATAATTTTT
1 ACAAATCAAAGGTATTTCAGTAATTTTGTAAATCAGGGGTACTTCTATAA-TTTT
* * * *
79320237 ACAAAGTCAAAGGTATTTCTGTAACTTTGTAAATCAGGGGTA-TTTTGGTAATTTT
1 ACAAA-TCAAAGGTATTTCAGTAATTTTGTAAATCAGGGGTACTTCT-ATAATTTT
** * *
79320292 ACAAATTGAGGGTATTTCGGTAATTTTGTAAATCGAGGG
1 ACAAATCAAAGGTATTTCAGTAATTTTGTAAATC-AGGG
79320331 TAAAACAGTA
Statistics
Matches: 78, Mismatches: 13, Indels: 6
0.80 0.13 0.06
Matches are distributed among these distances:
54 24 0.31
55 21 0.27
56 33 0.42
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.38
Consensus pattern (54 bp):
ACAAATCAAAGGTATTTCAGTAATTTTGTAAATCAGGGGTACTTCTATAATTTT
Found at i:79320329 original size:27 final size:27
Alignment explanation
Indices: 79320283--79320737 Score: 285
Period size: 27 Copynumber: 16.9 Consensus size: 27
79320273 GGGGTATTTT
* * **
79320283 GGTAATTTTACAAATTGAGGGTATTTC
1 GGTAATTTTATAAATCGAGGGTAAATC
* *
79320310 GGTAATTTTGTAAATCGAGGGTAAAAC
1 GGTAATTTTATAAATCGAGGGTAAATC
* * * ** *
79320337 AGTAATTCTGTAAATTAAGGGTAAAAC
1 GGTAATTTTATAAATCGAGGGTAAATC
* * *
79320364 AGTAATTGTATAAATCGAGGGTAAAAC
1 GGTAATTTTATAAATCGAGGGTAAATC
* * *
79320391 GGTAATTCTGTAAATCGAGGGTAAAAC
1 GGTAATTTTATAAATCGAGGGTAAATC
* * *
79320418 GGTAATTCTGTAAGTCGAGGGTAAAAT-
1 GGTAATTTTATAAATCGAGGGT-AAATC
* * * *
79320445 GATAATTATGTAAATC-AGGGGTAAAAC
1 GGTAATTTTATAAATCGA-GGGTAAATC
* * * * *
79320472 GGTAATTATGTAAATTGTGGGTAAAAC
1 GGTAATTTTATAAATCGAGGGTAAATC
* * *
79320499 GGTAATTCTGTAAGTCGAGGGTAAAAT-
1 GGTAATTTTATAAATCGAGGGT-AAATC
* * * *
79320526 GATAATTATGTAAATC-AGGGGTAAAAC
1 GGTAATTTTATAAATCGA-GGGTAAATC
* * * *
79320553 GGTAATTATGTAAAT-TAGGGGTAAAAC
1 GGTAATTTTATAAATCGA-GGGTAAATC
*
79320580 GGTAATTCTATAAATCGAGGGTAAAAT-
1 GGTAATTTTATAAATCGAGGGT-AAATC
* * * *
79320607 AGTAATTCTGTAAA-CTGAGGGTAAAAC
1 GGTAATTTTATAAATC-GAGGGTAAATC
* *
79320634 GGTAATTCTATAAATCGAGGGTAAAAC
1 GGTAATTTTATAAATCGAGGGTAAATC
* * *
79320661 GATAATTTTACAAATCGAGGGTAAAAC
1 GGTAATTTTATAAATCGAGGGTAAATC
* ** *
79320688 GGTAATTCTATAAATCGAGGGTACTTT
1 GGTAATTTTATAAATCGAGGGTAAATC
* *
79320715 GGTAATTTTACAAGTCGAGGGTA
1 GGTAATTTTATAAATCGAGGGTA
79320738 TTTCAATAAT
Statistics
Matches: 357, Mismatches: 58, Indels: 26
0.81 0.13 0.06
Matches are distributed among these distances:
26 12 0.03
27 334 0.94
28 11 0.03
ACGTcount: A:0.38, C:0.08, G:0.24, T:0.29
Consensus pattern (27 bp):
GGTAATTTTATAAATCGAGGGTAAATC
Found at i:79320342 original size:54 final size:54
Alignment explanation
Indices: 79320294--79320710 Score: 471
Period size: 54 Copynumber: 7.7 Consensus size: 54
79320284 GTAATTTTAC
*** * * *
79320294 AAATTGAGGGTATTTCGGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGT
1 AAATTGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGT
* * *
79320348 AAATTAAGGGTAAAACAGTAATTGTATAAATCGAGGGTAAAACGGTAATTCTGT
1 AAATTGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGT
* * * * * *
79320402 AAATCGAGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAATGATAATTATGT
1 AAATTGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGT
* * * * *
79320456 AAA-TCAGGGGTAAAACGGTAATTATGTAAATTGTGGGTAAAACGGTAATTCTGT
1 AAATTGA-GGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGT
* * * * * * *
79320510 AAGTCGAGGGTAAAATGATAATTATGTAAATC-AGGGGTAAAACGGTAATTATGT
1 AAATTGAGGGTAAAACGGTAATTCTATAAATCGA-GGGTAAAACGGTAATTCTGT
**
79320564 AAATT-AGGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGT
1 AAATTGA-GGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGT
* * * **
79320618 AAACTGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGATAATTTTAC
1 AAATTGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGT
*
79320672 AAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTA
1 AAATTGAGGGTAAAACGGTAATTCTATAAATCGAGGGTA
79320711 CTTTGGTAAT
Statistics
Matches: 305, Mismatches: 52, Indels: 12
0.83 0.14 0.03
Matches are distributed among these distances:
53 2 0.01
54 300 0.98
55 3 0.01
ACGTcount: A:0.40, C:0.08, G:0.24, T:0.29
Consensus pattern (54 bp):
AAATTGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGT
Found at i:79320721 original size:81 final size:81
Alignment explanation
Indices: 79320282--79320710 Score: 445
Period size: 81 Copynumber: 5.3 Consensus size: 81
79320272 AGGGGTATTT
* * * *** *
79320282 TGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTGTAAATCGAGGGTAAAAC-AGTAATTCT
1 TGGTAATTATATAAATCGAGGGTAAAACGGTAATTATGTAAATCGAGGGTAAAACGA-TAATTCT
* **
79320346 GTAAATTAAGGGTAAAA
65 ATAAATCGAGGGTAAAA
** * * * *
79320363 CAGTAATTGTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTG
1 TGGTAATTATATAAATCGAGGGTAAAACGGTAATTATGTAAATCGAGGGTAAAACGATAATTCTA
*
79320428 TAAGTCGAGGGTAAAA
66 TAAATCGAGGGTAAAA
* * * * *
79320444 TGATAATTATGTAAATC-AGGGGTAAAACGGTAATTATGTAAATTGTGGGTAAAACGGTAATTCT
1 TGGTAATTATATAAATCGA-GGGTAAAACGGTAATTATGTAAATCGAGGGTAAAACGATAATTCT
* *
79320508 GTAAGTCGAGGGTAAAA
65 ATAAATCGAGGGTAAAA
* * * *
79320525 TGATAATTATGTAAATC-AGGGGTAAAACGGTAATTATGTAAAT-TAGGGGTAAAACGGTAATTC
1 TGGTAATTATATAAATCGA-GGGTAAAACGGTAATTATGTAAATCGA-GGGTAAAACGATAATTC
79320588 TATAAATCGAGGGTAAAA
64 TATAAATCGAGGGTAAAA
* * * * * *
79320606 TAGTAATTCTGTAAA-CTGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGATAATTTT
1 TGGTAATTATATAAATC-GAGGGTAAAACGGTAATTATGTAAATCGAGGGTAAAACGATAATTCT
*
79320670 ACAAATCGAGGGTAAAA
65 ATAAATCGAGGGTAAAA
* *
79320687 CGGTAATTCTATAAATCGAGGGTA
1 TGGTAATTATATAAATCGAGGGTA
79320711 CTTTGGTAAT
Statistics
Matches: 304, Mismatches: 37, Indels: 14
0.86 0.10 0.04
Matches are distributed among these distances:
80 2 0.01
81 299 0.98
82 3 0.01
ACGTcount: A:0.39, C:0.08, G:0.24, T:0.29
Consensus pattern (81 bp):
TGGTAATTATATAAATCGAGGGTAAAACGGTAATTATGTAAATCGAGGGTAAAACGATAATTCTA
TAAATCGAGGGTAAAA
Found at i:79320747 original size:27 final size:27
Alignment explanation
Indices: 79320717--79320781 Score: 103
Period size: 27 Copynumber: 2.4 Consensus size: 27
79320707 GGTACTTTGG
79320717 TAATTTTACAAGTCGAGGGTATTTCAA
1 TAATTTTACAAGTCGAGGGTATTTCAA
* *
79320744 TAATTTTACAGGTCGAGGGTATTTCAG
1 TAATTTTACAAGTCGAGGGTATTTCAA
*
79320771 TAATTTCACAA
1 TAATTTTACAA
79320782 ATTAGGGGTA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.32, C:0.12, G:0.18, T:0.37
Consensus pattern (27 bp):
TAATTTTACAAGTCGAGGGTATTTCAA
Found at i:79320774 original size:81 final size:81
Alignment explanation
Indices: 79320662--79320925 Score: 189
Period size: 81 Copynumber: 3.3 Consensus size: 81
79320652 GGGTAAAACG
* *
79320662 ATAATTTTACAAATCGAGGGTAAAACGGTAA-TTCTATAAATCGA-GGGTACTTTGGTAATTTTA
1 ATAATTTTACAAATCGAGGGTAAAACAGTAATTTC-ACAAAT-GAGGGGTACTTTGGTAATTTTA
*
79320725 CAAGTCGA-GGGTATTTCA
64 CAA-ACGAGGGGTATTTCA
** *** * *
79320743 ATAATTTTACAGGTCGAGGGTATTTCAGTAATTTCACAAATTAGGGGTATTTTGGTAATTTTACA
1 ATAATTTTACAAATCGAGGGTAAAACAGTAATTTCACAAATGAGGGGTACTTTGGTAATTTTACA
* **
79320808 AACTAGGGGTATTTTG
66 AACGAGGGGTATTTCA
* ***** * *
79320824 ATAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTACAAACT-AGGGGTAATTTGGTAATTTTA
1 ATAATTTTACAAATCGA-GGGTAAAACAGTAATTTCACAAA-TGAGGGGTACTTTGGTAATTTTA
* * * * *
79320887 TAAACCAAGGGTCTTTTA
64 CAAACGAGGGGTATTTCA
* *
79320905 GTAATTTTACAAAGC-AGGGTA
1 ATAATTTTACAAATCGAGGGTA
79320926 TTTTGGTAAT
Statistics
Matches: 151, Mismatches: 26, Indels: 13
0.79 0.14 0.07
Matches are distributed among these distances:
80 10 0.07
81 136 0.90
82 5 0.03
ACGTcount: A:0.33, C:0.09, G:0.21, T:0.37
Consensus pattern (81 bp):
ATAATTTTACAAATCGAGGGTAAAACAGTAATTTCACAAATGAGGGGTACTTTGGTAATTTTACA
AACGAGGGGTATTTCA
Found at i:79320790 original size:27 final size:27
Alignment explanation
Indices: 79320760--79320938 Score: 236
Period size: 27 Copynumber: 6.7 Consensus size: 27
79320750 TACAGGTCGA
** * *
79320760 GGGTATTTCAGTAATTTCACAAATTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
79320787 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
*
79320814 GGGTATTTTGATAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
79320841 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
* * * *
79320868 GGGTAATTTGGTAATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACTAG
* *
79320895 GGGTCTTTTAGTAATTTTACAAAGC-A-
1 GGGTATTTTGGTAATTTTACAAA-CTAG
79320921 GGGTATTTTGGTAATTTT
1 GGGTATTTTGGTAATTTT
79320939 GTAAACCAAA
Statistics
Matches: 135, Mismatches: 16, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
26 16 0.12
27 118 0.87
28 1 0.01
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAG
Found at i:79320952 original size:26 final size:26
Alignment explanation
Indices: 79320788--79320955 Score: 138
Period size: 27 Copynumber: 6.3 Consensus size: 26
79320778 ACAAATTAGG
* * *
79320788 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTATAAACCA-A
* * * *
79320815 GGTATTTTGATAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTATAAACCA-A
* * *
79320842 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTATAAACCA-A
*
79320869 GGTAATTTGGTAATTTTATAAACCAA
1 GGTATTTTGGTAATTTTATAAACCAA
* * * * *
79320895 GGGTCTTTTAGTAATTTTACAAAGCAG
1 -GGTATTTTGGTAATTTTATAAACCAA
*
79320922 GGTATTTTGGTAATTTTGTAAACCAA
1 GGTATTTTGGTAATTTTATAAACCAA
*
79320948 AGTATTTT
1 GGTATTTT
79320956 AAACATGGAT
Statistics
Matches: 121, Mismatches: 19, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
26 27 0.22
27 94 0.78
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.41
Consensus pattern (26 bp):
GGTATTTTGGTAATTTTATAAACCAA
Found at i:79325236 original size:46 final size:46
Alignment explanation
Indices: 79325183--79325358 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
79325173 TATTTGGGCA
79325183 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
79325229 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
79325276 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
79325322 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
79325359 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:79325338 original size:93 final size:93
Alignment explanation
Indices: 79325179--79325350 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
79325169 GGGATATTTG
* *
79325179 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
79325244 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
79325272 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
79325337 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
79325351 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:79328329 original size:15 final size:15
Alignment explanation
Indices: 79328309--79328377 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
79328299 GTATCTTGGG
79328309 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
79328324 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
79328339 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
79328354 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
79328369 TTTCTTTAT
1 TTTCTTTAT
79328378 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:79328378 original size:30 final size:30
Alignment explanation
Indices: 79328300--79328387 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
79328290 CATAGTATCG
* * * *
79328300 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
79328330 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
79328360 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
79328388 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:79330821 original size:46 final size:46
Alignment explanation
Indices: 79330771--79330946 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
79330761 TATTTGGGCA
79330771 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
79330817 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
79330864 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
79330910 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
79330947 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:79330926 original size:93 final size:93
Alignment explanation
Indices: 79330767--79330938 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
79330757 TGGATATTTG
* *
79330767 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
79330832 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
79330860 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
79330925 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
79330939 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:79338933 original size:29 final size:29
Alignment explanation
Indices: 79338900--79338956 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
79338890 TCCTTAACTC
79338900 AAACTTTGGCAAAATTACAATTTTGCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCT
* * * *
79338929 AAACTTTTGCATATTTACACTTTTGCCC
1 AAACTTTGGCAAAATTACAATTTTGCCC
79338957 CTAGGCTCGG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.09, T:0.39
Consensus pattern (29 bp):
AAACTTTGGCAAAATTACAATTTTGCCCT
Found at i:79341237 original size:46 final size:46
Alignment explanation
Indices: 79341170--79341260 Score: 164
Period size: 46 Copynumber: 2.0 Consensus size: 46
79341160 AACATCTTTG
79341170 CTTACTAGAATCTATTTAGTCAGCTGAATTGACATAGGGATATATC
1 CTTACTAGAATCTATTTAGTCAGCTGAATTGACATAGGGATATATC
* *
79341216 CTTACTAGAATCTGTTTAGTCAGTTGAATTGACATAGGGATATAT
1 CTTACTAGAATCTATTTAGTCAGCTGAATTGACATAGGGATATAT
79341261 TAAGAGATGA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 43 1.00
ACGTcount: A:0.32, C:0.13, G:0.19, T:0.36
Consensus pattern (46 bp):
CTTACTAGAATCTATTTAGTCAGCTGAATTGACATAGGGATATATC
Found at i:79344480 original size:27 final size:27
Alignment explanation
Indices: 79344404--79344493 Score: 119
Period size: 27 Copynumber: 3.3 Consensus size: 27
79344394 TTTAGTTTAC
* *
79344404 TAAAATTACCGAAATACCCTTAG-TTTG
1 TAAAATTACTGAAATA-CCTTCGATTTG
* *
79344431 TAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACTGAAATACCTTCGATTTG
*
79344458 TAAAATTACTGAAATACCTTCGACTTG
1 TAAAATTACTGAAATACCTTCGATTTG
79344485 TAAAATTAC
1 TAAAATTAC
79344494 CAAAGTACCC
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 4 0.07
27 51 0.93
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (27 bp):
TAAAATTACTGAAATACCTTCGATTTG
Found at i:79344503 original size:54 final size:54
Alignment explanation
Indices: 79344404--79344510 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 54
79344394 TTTAGTTTAC
* * *
79344404 TAAAATTACCGAAATACCCTTAGTTTGTAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCCCGATTTG
* * *
79344458 TAAAATTACTGAAATA-CCTTCGACTTGTAAAATTAC-CAAAGTACCCCCGATTT
1 TAAAATTACCGAAATACCCTTAG-CTTGTAAAAATACTCAAA-TACCCCCGATTT
79344511 ACAGAATTAT
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
53 8 0.18
54 37 0.82
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (54 bp):
TAAAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCCCGATTTG
Found at i:79344529 original size:27 final size:26
Alignment explanation
Indices: 79344499--79344708 Score: 244
Period size: 27 Copynumber: 7.8 Consensus size: 26
79344489 ATTACCAAAG
*
79344499 TACCCCCGATTTACAGAATTATCGTTT
1 TACCCTCGATTTACAGAATTA-CGTTT
*
79344526 TACCC-CGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAGAATTA-CGTTT
*
79344552 TACCC-CTGATTTACATAATTATCGTTT
1 TACCCTC-GATTTACAGAATTA-CGTTT
*
79344579 TACCCTCGACTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTA-CGTTT
79344606 TACCCTCGATTTACAGAATTACAGTTT
1 TACCCTCGATTTACAGAATTAC-GTTT
* *
79344633 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTAC-GTTT
* * *
79344660 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTAC-GTTT
*
79344687 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
79344709 TAAAATACCC
Statistics
Matches: 166, Mismatches: 14, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
26 26 0.16
27 139 0.84
28 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.09, T:0.40
Consensus pattern (26 bp):
TACCCTCGATTTACAGAATTACGTTT
Found at i:79344717 original size:27 final size:27
Alignment explanation
Indices: 79344633--79344910 Score: 154
Period size: 27 Copynumber: 10.2 Consensus size: 27
79344623 ATTACAGTTT
* ***
79344633 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTATAAAATTACTAAAA
* * ***
79344660 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTCGATTTATAAAATTACTAAAA
*
79344687 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTATAAAATTACTAAAA
* * *
79344714 TACCCT-TAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTATAAAATTACTAAAA
* *
79344741 TACCC-CTAGTTTGTAAAATTA-TCAAAA
1 TACCCTCGA-TTTATAAAATTACT-AAAA
* * * * **
79344768 TACCCTTGGTTTGTGAAATTACCGAAA
1 TACCCTCGATTTATAAAATTACTAAAA
* * *
79344795 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACTAAAA
*
79344822 TACCC-CTGATTTATAAAGTTAC-AGAAA
1 TACCCTC-GATTTATAAAATTACTA-AAA
* *
79344849 TACCCTTGACTTTCTAAAAATTA-TAGAAA
1 TACCCTCGA-TTTAT-AAAATTACTA-AAA
* * * * *
79344878 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTCGATTTATAAAATTACTAAAA
79344905 TACCCT
1 TACCCT
79344911 TGGTTTGTAG
Statistics
Matches: 204, Mismatches: 35, Indels: 24
0.78 0.13 0.09
Matches are distributed among these distances:
26 3 0.01
27 175 0.86
28 8 0.04
29 18 0.09
ACGTcount: A:0.38, C:0.19, G:0.08, T:0.35
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACTAAAA
Found at i:79344734 original size:54 final size:54
Alignment explanation
Indices: 79344432--79344845 Score: 142
Period size: 54 Copynumber: 7.7 Consensus size: 54
79344422 CTTAGTTTGT
* * * * * *** * * **
79344432 AAAAATACTGAAATACCCTCGATTTGTAAAATTACTGAAATACCTTCGACTTGT
1 AAAATTACTAAAATACCCTTGATTTATAAAATTACAGTTTTACCCTCGATTTAC
* * ** * *
79344486 AAAATTACCAAAGTACCCCCGATTTACAGAATTATC-GTTTTACCC-CGATTTAC
1 AAAATTACTAAAATACCCTTGATTTATAAAATTA-CAGTTTTACCCTCGATTTAC
* ***** * * * *
79344539 ATAATTACCGTTTTACCCCTGATTTACATAATTATC-GTTTTACCCTCGACTTAC
1 AAAATTACTAAAATACCCTTGATTTATAAAATTA-CAGTTTTACCCTCGATTTAC
* ***** * * * *
79344593 AGAATTACCGTTTTACCCTCGATTTACAGAATTACAGTTTTACCCTCGATTTAT
1 AAAATTACTAAAATACCCTTGATTTATAAAATTACAGTTTTACCCTCGATTTAC
* *** *
79344647 AGAATTACTATTTTACCCTTGATTTATAGAATTACTA-TTTTACCCTCGATTTAC
1 AAAATTACTAAAATACCCTTGATTTATAAAATTAC-AGTTTTACCCTCGATTTAC
* *** * **
79344701 AAAATTACTAAAATACCCTT-AGTTTGTAAAATTACCA-AAATACCC-CTAGTTTGT
1 AAAATTACTAAAATACCCTTGA-TTTATAAAATTA-CAGTTTTACCCTCGA-TTTAC
* * * * *** * **
79344755 AAAATTA-TCAAAATACCCTTGGTTTGTGAAATTACCGAAATACCCTCAATTTGT
1 AAAATTACT-AAAATACCCTTGATTTATAAAATTACAGTTTTACCCTCGATTTAC
* * *
79344809 AAAATTACCAAAATACCCCTGATTTATAAAGTTACAG
1 AAAATTACTAAAATACCCTTGATTTATAAAATTACAG
79344846 AAATACCCTT
Statistics
Matches: 291, Mismatches: 57, Indels: 24
0.78 0.15 0.06
Matches are distributed among these distances:
53 49 0.17
54 237 0.81
55 5 0.02
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (54 bp):
AAAATTACTAAAATACCCTTGATTTATAAAATTACAGTTTTACCCTCGATTTAC
Found at i:79344734 original size:81 final size:81
Alignment explanation
Indices: 79344445--79344735 Score: 196
Period size: 81 Copynumber: 3.6 Consensus size: 81
79344435 AATACTGAAA
** * * * * * * *** * *
79344445 TACCCTCGATTTGTAAAATTACTGAAATACCTTCGACTTGTAAAATTACCAAAGTACCCCCGATT
1 TACCCTCGATTTACAAAATTACAGAAATACCCTAGATTTATAAAATTACTATTTTACCCTCGACT
* *
79344510 TACAGAATTATCGTTT
66 TACAGAATTACCATTT
* * *** * * *
79344526 TACCC-CGATTTACATAATTACCGTTTTACCCCT-GATTTACATAATTA-TCGTTTTACCCTCGA
1 TACCCTCGATTTACAAAATTACAGAAATA-CCCTAGATTTATAAAATTACT-ATTTTACCCTCGA
*
79344588 CTTACAGAATTACCGTTT
64 CTTACAGAATTACCATTT
* *** * * * *
79344606 TACCCTCGATTTACAGAATTACAGTTTTACCCTCGATTTATAGAATTACTATTTTACCCTTGATT
1 TACCCTCGATTTACAAAATTACAGAAATACCCTAGATTTATAAAATTACTATTTTACCCTCGACT
* *
79344671 TATAGAATTACTATTT
66 TACAGAATTACCATTT
*
79344687 TACCCTCGATTTACAAAATTACTA-AAATACCCTTAG-TTTGTAAAATTAC
1 TACCCTCGATTTACAAAATTAC-AGAAATACCC-TAGATTTATAAAATTAC
79344736 CAAAATACCC
Statistics
Matches: 166, Mismatches: 37, Indels: 14
0.76 0.17 0.06
Matches are distributed among these distances:
80 59 0.36
81 103 0.62
82 4 0.02
ACGTcount: A:0.31, C:0.22, G:0.09, T:0.38
Consensus pattern (81 bp):
TACCCTCGATTTACAAAATTACAGAAATACCCTAGATTTATAAAATTACTATTTTACCCTCGACT
TACAGAATTACCATTT
Found at i:79344855 original size:81 final size:81
Alignment explanation
Indices: 79344702--79344856 Score: 224
Period size: 81 Copynumber: 1.9 Consensus size: 81
79344692 TCGATTTACA
* * * *
79344702 AAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTATCAAA
1 AAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGTTTATAAAATTATCAAA
79344767 ATACCCTTGGTTTGTG
66 ATACCCTTGGTTTGTG
* *
79344783 AAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCT-GATTTATAAAGTTA-CAG
1 AAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAG-TTTATAAAATTATCA-
79344846 AAATACCCTTG
64 AAATACCCTTG
79344857 ACTTTCTAAA
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
80 3 0.05
81 63 0.95
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (81 bp):
AAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGTTTATAAAATTATCAAA
ATACCCTTGGTTTGTG
Found at i:79344913 original size:27 final size:27
Alignment explanation
Indices: 79344701--79344939 Score: 187
Period size: 27 Copynumber: 8.8 Consensus size: 27
79344691 CTCGATTTAC
*
79344701 AAAATTACTAAAATACCCTTAGTTTGT
1 AAAATTACTAAAATACCCTTGGTTTGT
* * *
79344728 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACTAAAATACCCTTGGTTTGT
79344755 AAAATTA-TCAAAATACCCTTGGTTTGT
1 AAAATTACT-AAAATACCCTTGGTTTGT
* ** ***
79344782 GAAATTACCGAAATACCCTCAATTTGT
1 AAAATTACTAAAATACCCTTGGTTTGT
* * * *
79344809 AAAATTACCAAAATACCCCTGATTTAT
1 AAAATTACTAAAATACCCTTGGTTTGT
* * *
79344836 AAAGTTAC-AGAAATACCCTTGACTTTCT
1 AAAATTACTA-AAATACCCTTG-GTTTGT
* **
79344864 AAAAATTA-TAGAAATACCATTGGTTTAC
1 -AAAATTACTA-AAATACCCTTGGTTTGT
*
79344892 AAAATTACTGAAATACCCTTGGTTTGT
1 AAAATTACTAAAATACCCTTGGTTTGT
* * * *
79344919 AGATTTACCAAAACACCCTTG
1 AAAATTACTAAAATACCCTTG
79344940 TAGGATTAAA
Statistics
Matches: 170, Mismatches: 35, Indels: 14
0.78 0.16 0.06
Matches are distributed among these distances:
26 1 0.01
27 143 0.84
28 8 0.05
29 18 0.11
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (27 bp):
AAAATTACTAAAATACCCTTGGTTTGT
Found at i:79345034 original size:27 final size:27
Alignment explanation
Indices: 79344957--79345034 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
79344947 AAATGACTAA
* *
79344957 AATACCCCTAT-TAGGTAAAAAGACCGT
1 AATACCCCTGTAT-GGTAAAATGACCGT
* *
79344984 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTATGGTAAAATGACCGT
79345011 AATACCCCTGTATGGTAAAATGAC
1 AATACCCCTGTATGGTAAAATGAC
79345035 GAATATGCCC
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
26 1 0.02
27 40 0.95
28 1 0.02
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.22
Consensus pattern (27 bp):
AATACCCCTGTATGGTAAAATGACCGT
Found at i:79354342 original size:25 final size:25
Alignment explanation
Indices: 79354312--79354359 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
79354302 TTATAATATT
*
79354312 AAAATGACCATTTTACCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
79354337 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
79354360 GTTTATACAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.38, C:0.25, G:0.12, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:79354426 original size:20 final size:20
Alignment explanation
Indices: 79354403--79354486 Score: 150
Period size: 20 Copynumber: 4.2 Consensus size: 20
79354393 TAAACATGGT
79354403 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
*
79354423 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAC
79354443 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
*
79354463 ATGTATGATATGCACATGAG
1 ATGTATGATATGCACATGAC
79354483 ATGT
1 ATGT
79354487 TCATAAATGC
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.35, C:0.12, G:0.21, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:79354443 original size:11 final size:11
Alignment explanation
Indices: 79354407--79354481 Score: 63
Period size: 11 Copynumber: 7.4 Consensus size: 11
79354397 CATGGTATGT
79354407 ATGATATGCAC
1 ATGATATGCAC
* *
79354418 ATGACATG--T
1 ATGATATGCAC
79354427 ATGATATGCAC
1 ATGATATGCAC
*
79354438 ATGATATG--T
1 ATGATATGCAC
79354447 ATGATATGCAC
1 ATGATATGCAC
* *
79354458 ATGACATG--T
1 ATGATATGCAC
79354467 ATGATATGCAC
1 ATGATATGCAC
79354478 ATGA
1 ATGA
79354482 GATGTTCATA
Statistics
Matches: 48, Mismatches: 10, Indels: 12
0.69 0.14 0.17
Matches are distributed among these distances:
9 22 0.46
11 26 0.54
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:79354612 original size:25 final size:24
Alignment explanation
Indices: 79354533--79354726 Score: 252
Period size: 25 Copynumber: 8.0 Consensus size: 24
79354523 AGGAAGTGCA
*
79354533 AAAGGGCTTATGCCCTAGTTAT-T
1 AAAGGGCTTATGCCCCAGTTATAT
79354556 AAAGGGCTTATGCCCCAGTTAT-T
1 AAAGGGCTTATGCCCCAGTTATAT
79354579 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTAT-AT
79354604 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTAT-AT
* *
79354629 GAAGGGCTTATGCCCCAGTTGTGAT
1 AAAGGGCTTATGCCCCAGTTAT-AT
*
79354654 AAAGGGCTTATGCCCCAGTTATAA
1 AAAGGGCTTATGCCCCAGTTATAT
*
79354678 AAAGGGCTTTTGCCCCAGTTACTA-
1 AAAGGGCTTATGCCCCAGTTA-TAT
*
79354702 AAAGAGGC-TAGGCCTCCAGTTATAT
1 AAAG-GGCTTATGCC-CCAGTTATAT
79354727 GATAAAGCAG
Statistics
Matches: 156, Mismatches: 9, Indels: 10
0.89 0.05 0.06
Matches are distributed among these distances:
23 44 0.28
24 31 0.20
25 81 0.52
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (24 bp):
AAAGGGCTTATGCCCCAGTTATAT
Found at i:79354953 original size:31 final size:31
Alignment explanation
Indices: 79354918--79354981 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
79354908 CGTTTACAGT
* *
79354918 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCAGCCCAGTAATATGAAATATGA
**
79354949 AAAGGCTTCAGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCAGCCCAGTAATATGAAATATGA
79354980 AA
1 AA
79354982 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAGTAATATGAAATATGA
Found at i:79360094 original size:30 final size:30
Alignment explanation
Indices: 79360060--79360120 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
79360050 TTCCCGAGCC
79360060 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * *
79360090 TAGGGGCAAAATTGTAATTTTGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
79360120 T
1 T
79360121 GAGTTAAGGA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.39, C:0.07, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:79367057 original size:22 final size:22
Alignment explanation
Indices: 79367029--79367074 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
79367019 AATTTTGTTC
79367029 TTGTTTGAGGACAATCCTCAAG
1 TTGTTTGAGGACAATCCTCAAG
79367051 TTGTTTGAGGACAATCCTCAAG
1 TTGTTTGAGGACAATCCTCAAG
79367073 TT
1 TT
79367075 ACGGAACCAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.22, T:0.35
Consensus pattern (22 bp):
TTGTTTGAGGACAATCCTCAAG
Found at i:79371265 original size:25 final size:25
Alignment explanation
Indices: 79371236--79371283 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
79371226 TTATAATATG
** *
79371236 AAAATAACTGTTTTGCCCCTAGGTA
1 AAAATAACCATTTTACCCCTAGGTA
*
79371261 AAAATGACCATTTTACCCCTAGG
1 AAAATAACCATTTTACCCCTAGG
79371284 GTTTAATTAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.29
Consensus pattern (25 bp):
AAAATAACCATTTTACCCCTAGGTA
Found at i:79371463 original size:26 final size:26
Alignment explanation
Indices: 79371415--79371487 Score: 85
Period size: 26 Copynumber: 2.8 Consensus size: 26
79371405 GGAGGAAGTG
* *
79371415 CAAAAGGGC-TATACCCCAGTTTACC
1 CAAAAGGGCTTTTGCCCCAGTTTACC
**
79371440 CAAAAGGGCTTTTGCCCCAGTTTATT
1 CAAAAGGGCTTTTGCCCCAGTTTACC
* *
79371466 AAAAAGGGATTTTGCCCCAGTT
1 CAAAAGGGCTTTTGCCCCAGTT
79371488 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
25 9 0.22
26 32 0.78
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
CAAAAGGGCTTTTGCCCCAGTTTACC
Found at i:79371469 original size:25 final size:25
Alignment explanation
Indices: 79371441--79371494 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 25
79371431 CAGTTTACCC
79371441 AAAAGGGCTTTTGCCCCAGTTTATTA
1 AAAAGGGCTTTTGCCCCAG-TTATTA
*
79371467 AAAAGGGATTTTGCCCCAGTTATTA
1 AAAAGGGCTTTTGCCCCAGTTATTA
79371492 AAA
1 AAA
79371495 GAGGCTAGGC
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
25 9 0.33
26 18 0.67
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31
Consensus pattern (25 bp):
AAAAGGGCTTTTGCCCCAGTTATTA
Found at i:79371746 original size:31 final size:31
Alignment explanation
Indices: 79371703--79371804 Score: 179
Period size: 31 Copynumber: 3.3 Consensus size: 31
79371693 CATATTGTTA
79371703 CAGTAATATGAATAATGAAAAGGCTTCGGCC
1 CAGTAATATGAATAATGAAAAGGCTTCGGCC
*
79371734 CAGTGATATGAATAATGAAAAGGCTTCGGCC
1 CAGTAATATGAATAATGAAAAGGCTTCGGCC
*
79371765 CAGTAATATGAATAATGTAAAGGCTTCGGCC
1 CAGTAATATGAATAATGAAAAGGCTTCGGCC
79371796 CAGT-ATATG
1 CAGTAATATG
79371805 CTGAGATTGA
Statistics
Matches: 68, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
30 5 0.07
31 63 0.93
ACGTcount: A:0.36, C:0.16, G:0.24, T:0.25
Consensus pattern (31 bp):
CAGTAATATGAATAATGAAAAGGCTTCGGCC
Found at i:79379330 original size:25 final size:25
Alignment explanation
Indices: 79379302--79379349 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
79379292 TTATAATATG
* *
79379302 AAAATGACTATTTTGCCCCTAGGAA
1 AAAATGACCATTTTACCCCTAGGAA
79379327 AAAATGACCATTTTACCCCTAGG
1 AAAATGACCATTTTACCCCTAGG
79379350 GTTTAATTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTTTACCCCTAGGAA
Found at i:79379559 original size:25 final size:26
Alignment explanation
Indices: 79379497--79379557 Score: 95
Period size: 26 Copynumber: 2.3 Consensus size: 26
79379487 AAAGGGCTAC
* * *
79379497 GCCCTAGTTTACCGAAAAGGGCTTTT
1 GCCCCAGTTTATCAAAAAGGGCTTTT
79379523 GCCCCAGTTTATCAAAAAGGGCTTTT
1 GCCCCAGTTTATCAAAAAGGGCTTTT
79379549 GCCCCAGTT
1 GCCCCAGTT
79379558 ATTAAAAGAG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (26 bp):
GCCCCAGTTTATCAAAAAGGGCTTTT
Found at i:79379570 original size:25 final size:26
Alignment explanation
Indices: 79379497--79379570 Score: 82
Period size: 26 Copynumber: 2.9 Consensus size: 26
79379487 AAAGGGCTAC
* *
79379497 GCCCTAGTTTACCGAAAAG-GGCTTTT
1 GCCCCAGTTTATC-AAAAGAGGCTTTT
79379523 GCCCCAGTTTATCAAAA-AGGGCTTTT
1 GCCCCAGTTTATCAAAAGA-GGCTTTT
*
79379549 GCCCCAG-TTATTAAAAGAGGCT
1 GCCCCAGTTTATCAAAAGAGGCT
79379571 AGGCCTCCAG
Statistics
Matches: 42, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
25 16 0.38
26 26 0.62
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (26 bp):
GCCCCAGTTTATCAAAAGAGGCTTTT
Found at i:79379816 original size:31 final size:31
Alignment explanation
Indices: 79379778--79379867 Score: 126
Period size: 31 Copynumber: 2.9 Consensus size: 31
79379768 TGTTACAGTA
*
79379778 ATATGAATAATGAAAAGGCGTCGGCCCACTG
1 ATATGAATAATGAAAAGGCTTCGGCCCACTG
* * * *
79379809 ATATGAATAATGAAAATGCTTCAGCCTAGTG
1 ATATGAATAATGAAAAGGCTTCGGCCCACTG
*
79379840 ATATGAATAATGTAAAGGCTTCGGCCCA
1 ATATGAATAATGAAAAGGCTTCGGCCCA
79379868 GTATATGCTA
Statistics
Matches: 50, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 50 1.00
ACGTcount: A:0.37, C:0.17, G:0.22, T:0.24
Consensus pattern (31 bp):
ATATGAATAATGAAAAGGCTTCGGCCCACTG
Found at i:79386625 original size:30 final size:30
Alignment explanation
Indices: 79386589--79386689 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
79386579 GACAAGATTG
* * *
79386589 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
79386619 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
79386647 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
79386676 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
79386690 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:79386701 original size:29 final size:28
Alignment explanation
Indices: 79386618--79386693 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
79386608 AAAATTGTAC
* *
79386618 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
79386646 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
79386675 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
79386694 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:79390933 original size:40 final size:40
Alignment explanation
Indices: 79390867--79391033 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
79390857 AAATTGAATG
* * *
79390867 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
79390906 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
79390946 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
79390986 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
79391026 ATATCCGG
1 ATATCCGG
79391034 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:79398036 original size:17 final size:18
Alignment explanation
Indices: 79397994--79398042 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
79397984 AGTTGAAAAG
79397994 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
79398013 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
79398030 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
79398043 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:79398959 original size:37 final size:37
Alignment explanation
Indices: 79398864--79399011 Score: 156
Period size: 40 Copynumber: 3.9 Consensus size: 37
79398854 AAATTGAATG
* * *
79398864 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCT---AGTT
*
79398903 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTT
* *
79398940 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGCGAGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTT
*
79398977 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 A---TATCCGGGCTAAGACCCGAAGGCAATTGTGC
79399012 ACGTGATTAT
Statistics
Matches: 94, Mismatches: 9, Indels: 11
0.82 0.08 0.10
Matches are distributed among these distances:
36 3 0.03
37 34 0.36
39 13 0.14
40 42 0.45
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (37 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTT
Found at i:79401321 original size:13 final size:13
Alignment explanation
Indices: 79401305--79401337 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
79401295 TTTAACTAAA
*
79401305 TTAGTTAATTAGT
1 TTAGATAATTAGT
79401318 TTAGATAATTAGT
1 TTAGATAATTAGT
79401331 TTA-ATAA
1 TTAGATAA
79401338 AAAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:79402594 original size:43 final size:42
Alignment explanation
Indices: 79402546--79402643 Score: 135
Period size: 43 Copynumber: 2.3 Consensus size: 42
79402536 ATGGTGTGAG
* *
79402546 ACACGAGCATGTCCCTTGGTCATG-TGAGACACACGGCCTGGCC
1 ACACGAGCATGTCCCTTGG-C-TGTTGAGACACACAGCCTAGCC
79402589 ACACGAGCATGTCCCTTGGCTGTTTGAGACACACAGCCTAGCC
1 ACACGAGCATGTCCCTTGGCTG-TTGAGACACACAGCCTAGCC
*
79402632 ACACGGGCATGT
1 ACACGAGCATGT
79402644 GTCCCCTCTA
Statistics
Matches: 50, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
41 2 0.04
42 1 0.02
43 47 0.94
ACGTcount: A:0.22, C:0.32, G:0.27, T:0.19
Consensus pattern (42 bp):
ACACGAGCATGTCCCTTGGCTGTTGAGACACACAGCCTAGCC
Found at i:79406327 original size:47 final size:45
Alignment explanation
Indices: 79406255--79406476 Score: 162
Period size: 47 Copynumber: 4.8 Consensus size: 45
79406245 TTATTTGTGT
*
79406255 GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCACATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACA-TATGAGA
* * *
79406301 GCTAGTGTAAGACCATGTCTGGGACATGACATCAG-CATTGAGATGAGA
1 GCTAGTGTAAGA-CATGTCTGGGACATG-CATCGGCCA--CATATGAGA
** * * * **
79406349 GCTAGTGTAAGATTTGTCTGGGACATGCATCGACCTCGAGATGTTA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATATGAGA
* * * * *
79406395 GCCAGTCTAAGACATGTCTGGGACATGGCATCGACTTA-ATATGAAA
1 GCTAGTGTAAGACATGTCTGGGACAT-GCATCGGC-CACATATGAGA
* *
79406441 GAC-AATGTAAGACCATGTCTGGAACATGGCATCGGC
1 G-CTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
79406477 ATTATACCCT
Statistics
Matches: 141, Mismatches: 25, Indels: 19
0.76 0.14 0.10
Matches are distributed among these distances:
46 57 0.40
47 60 0.43
48 23 0.16
49 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.24
Consensus pattern (45 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATATGAGA
Found at i:79406413 original size:46 final size:46
Alignment explanation
Indices: 79406255--79406429 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
79406245 TTATTTGTGT
* * * *
79406255 GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCAC-ATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACCTCGA-GATGAGA
* *
79406301 GCTAGTGTAAGACCATGTCTGGGACATGACATC-AGCATTGAGATGAGA
1 GCTAGTGTAAGA-CATGTCTGGGACATG-CATCGA-CCTCGAGATGAGA
** **
79406349 GCTAGTGTAAGATTTGTCTGGGACATGCATCGACCTCGAGATGTTA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGATGAGA
* *
79406395 GCCAGTCTAAGACATGTCTGGGACATGGCATCGAC
1 GCTAGTGTAAGACATGTCTGGGACAT-GCATCGAC
79406430 TTAATATGAA
Statistics
Matches: 107, Mismatches: 16, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
46 47 0.44
47 36 0.34
48 23 0.21
49 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGATGAGA
Found at i:79408249 original size:27 final size:27
Alignment explanation
Indices: 79408111--79408263 Score: 105
Period size: 27 Copynumber: 5.7 Consensus size: 27
79408101 ATGGTCTGTT
*
79408111 AGGACTATCATGTATGGAAGGTCCATC
1 AGGACTATCATATATGGAAGGTCCATC
** * * *
79408138 AATATTATCATATGTGGAGGGTCCATC
1 AGGACTATCATATATGGAAGGTCCATC
* * * * *
79408165 AAGACTAT-ATTATGTGGAAGGTTCGTT
1 AGGACTATCA-TATATGGAAGGTCCATC
* * * * *
79408192 AGGACTATCTTATGTGAAAGGTCCGTT
1 AGGACTATCATATATGGAAGGTCCATC
* *
79408219 AGGACTATCCTATATGGAAGGTCCACC
1 AGGACTATCATATATGGAAGGTCCATC
*
79408246 AGGACTGT--TATATGGAAG
1 AGGACTATCATATATGGAAG
79408264 ATTTGTCAAG
Statistics
Matches: 101, Mismatches: 23, Indels: 6
0.78 0.18 0.05
Matches are distributed among these distances:
25 10 0.10
26 1 0.01
27 90 0.89
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.30
Consensus pattern (27 bp):
AGGACTATCATATATGGAAGGTCCATC
Found at i:79412270 original size:43 final size:43
Alignment explanation
Indices: 79412223--79412317 Score: 111
Period size: 43 Copynumber: 2.2 Consensus size: 43
79412213 TCCCGAATAG
* * * *
79412223 GGTCTTACACAAAATC-GATTAACGATGCCAATGTCCTAGACAT
1 GGTCTTACACAAAATCTCAAT-ACAATGCCAATGTCCCAGACAT
* **
79412266 GGTCTTGCACGTAATCTCAATACAATGCCAATGTCCCAGACAT
1 GGTCTTACACAAAATCTCAATACAATGCCAATGTCCCAGACAT
79412309 GGTCTTACA
1 GGTCTTACA
79412318 TGTAATCACA
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
43 41 0.95
44 2 0.05
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (43 bp):
GGTCTTACACAAAATCTCAATACAATGCCAATGTCCCAGACAT
Found at i:79417522 original size:28 final size:28
Alignment explanation
Indices: 79417497--79417554 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
79417487 CTTCTCAATT
79417497 TATAATCCCTATCAATAATATCTCAAAA
1 TATAATCCCTATCAATAATATCTCAAAA
79417525 TATAATCCCTATCAATAATATCTCAAAA
1 TATAATCCCTATCAATAATATCTCAAAA
79417553 TA
1 TA
79417555 ATCCATAAGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.47, C:0.21, G:0.00, T:0.33
Consensus pattern (28 bp):
TATAATCCCTATCAATAATATCTCAAAA
Found at i:79425738 original size:5 final size:5
Alignment explanation
Indices: 79425728--79425825 Score: 74
Period size: 5 Copynumber: 18.2 Consensus size: 5
79425718 TGAATCCTCC
*
79425728 TATTT TATTT TA-TT TATTCT TATTTT TATTT T-CTT TATTT TATTTT
1 TATTT TATTT TATTT TATT-T TA-TTT TATTT TATTT TATTT TA-TTT
* *
79425774 TATTTT TCTTT TGATTTT TATTT TCATTT CAATTT TATTAT TATTT TATTT
1 TA-TTT TATTT T-A-TTT TATTT T-ATTT -TATTT TATT-T TATTT TATTT
79425825 T
1 T
79425826 GAAAGACATA
Statistics
Matches: 77, Mismatches: 6, Indels: 20
0.75 0.06 0.19
Matches are distributed among these distances:
4 7 0.09
5 34 0.44
6 30 0.39
7 6 0.08
ACGTcount: A:0.18, C:0.05, G:0.01, T:0.76
Consensus pattern (5 bp):
TATTT
Found at i:79425769 original size:26 final size:25
Alignment explanation
Indices: 79425736--79425785 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 25
79425726 CCTATTTTAT
79425736 TTTATTTATTCTTATTTTTATTTTC
1 TTTATTTATTCTTATTTTTATTTTC
* *
79425761 TTTATTTTATTTTTATTTTTCTTTT
1 TTTA-TTTATTCTTATTTTTATTTT
79425786 GATTTTTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 4 0.18
26 18 0.82
ACGTcount: A:0.14, C:0.06, G:0.00, T:0.80
Consensus pattern (25 bp):
TTTATTTATTCTTATTTTTATTTTC
Found at i:79425783 original size:35 final size:38
Alignment explanation
Indices: 79425728--79425820 Score: 113
Period size: 41 Copynumber: 2.4 Consensus size: 38
79425718 TGAATCCTCC
79425728 TATTTTA-TTTTATTTATTC-TT-ATTTTTATTTTC-TT
1 TATTTTATTTTTATTT-TTCTTTGATTTTTATTTTCATT
79425763 TATTTTATTTTTATTTTTCTTTTGATTTTTATTTTCATT
1 TATTTTATTTTTATTTTTC-TTTGATTTTTATTTTCATT
*
79425802 TCAATTTTATTATTATTTT
1 T--ATTTTATTTTTATTTT
79425821 ATTTTGAAAG
Statistics
Matches: 50, Mismatches: 1, Indels: 8
0.85 0.02 0.14
Matches are distributed among these distances:
35 10 0.20
36 8 0.16
37 2 0.04
38 12 0.24
39 3 0.06
41 15 0.30
ACGTcount: A:0.18, C:0.05, G:0.01, T:0.75
Consensus pattern (38 bp):
TATTTTATTTTTATTTTTCTTTGATTTTTATTTTCATT
Found at i:79425792 original size:7 final size:6
Alignment explanation
Indices: 79425740--79425825 Score: 68
Period size: 6 Copynumber: 14.3 Consensus size: 6
79425730 TTTTATTTTA
* * * *
79425740 TTTATT CTTATT TTTATT TTCTTTAT TTTATT TTTATT TTTCTT TTGATT
1 TTTATT TTTATT TTTATT TT-TAT-T TTTATT TTTATT TTTATT TTTATT
* * * *
79425790 TTTATT TTCA-T TTCAAT TTTATT ATTA-T TTTATT TT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TT
79425826 GAAAGACATA
Statistics
Matches: 63, Mismatches: 13, Indels: 8
0.75 0.15 0.10
Matches are distributed among these distances:
5 9 0.14
6 47 0.75
7 4 0.06
8 3 0.05
ACGTcount: A:0.17, C:0.06, G:0.01, T:0.76
Consensus pattern (6 bp):
TTTATT
Found at i:79429335 original size:15 final size:17
Alignment explanation
Indices: 79429317--79429356 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 17
79429307 TTAGTGAATT
79429317 AAATGTTAAAG-AC-TA
1 AAATGTTAAAGAACTTA
79429332 AAAT-TTAAAGAACTTA
1 AAATGTTAAAGAACTTA
79429348 AAACTGTTA
1 AAA-TGTTA
79429357 GTGCTCGGGG
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
14 6 0.29
15 6 0.29
16 5 0.24
17 1 0.05
18 3 0.14
ACGTcount: A:0.53, C:0.07, G:0.10, T:0.30
Consensus pattern (17 bp):
AAATGTTAAAGAACTTA
Found at i:79437325 original size:40 final size:40
Alignment explanation
Indices: 79437259--79437425 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
79437249 AAATTGAATG
* * *
79437259 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
79437298 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
79437338 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
79437378 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
79437418 ATATCCGG
1 ATATCCGG
79437426 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Done.