Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 253 of 318
Found at i:79800465 original size:49 final size:49
Alignment explanation
Indices: 79800410--79800820 Score: 696
Period size: 49 Copynumber: 8.4 Consensus size: 49
79800400 TTTTACATTA
*
79800410 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
79800459 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
*
79800508 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
*
79800557 GCCATTAGGCCTCATCACATATACATCCACTTTCACATTCACCACATCG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
* *
79800606 GCCATTAGGCCTCATCACATATACATCCACTTTCACATTCATCACATCG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
79800655 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
* *
79800704 GCCATTAGGCCTCATCACATATACATCCACTTTCACATTCATCACATCG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
* * * * *
79800753 GCCATTAGGCCTTATCACATATACATACACTTTCACATGCATCGCATTG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
* *
79800802 GCCATTCGGCCTTATCACA
1 GCCATTAGGCCTCATCACA
79800821 CATATATGTA
Statistics
Matches: 347, Mismatches: 15, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 347 1.00
ACGTcount: A:0.29, C:0.34, G:0.09, T:0.28
Consensus pattern (49 bp):
GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
Found at i:79805496 original size:40 final size:40
Alignment explanation
Indices: 79805403--79805589 Score: 252
Period size: 40 Copynumber: 4.7 Consensus size: 40
79805393 ATAACCGCAA
* * * *** *
79805403 GCACAATTGCCTTCGGGTCTTAACCC-GATTTGGTAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
79805442 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
79805482 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
* *
79805522 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAA-CAACTC
* *
79805562 GCATAAATGCCTTCGGGACTTAGCCCGG
1 GCACAAATGCCTTCGGGTCTTAGCCCGG
79805590 GTATCATTCA
Statistics
Matches: 134, Mismatches: 12, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 24 0.18
40 109 0.81
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
Found at i:79813561 original size:40 final size:39
Alignment explanation
Indices: 79813540--79813720 Score: 193
Period size: 40 Copynumber: 4.5 Consensus size: 39
79813530 AAAGCACAAT
* * *** * *
79813540 TGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATAACAAC-CGCACGAA
79813580 TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATAACAAC-CGCACGAA
*
79813620 TGCCTTCGGGTCTTAGTCCGGATATAACAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATAACAAC-CGCACGAA
* * **
79813660 TGCCTTCGAGTCTTAGCCCGGATATAATC-ACTAGCATAAA
1 TGCCTTCGGGTCTTAGCCCGGATATAA-CAAC-CGCACGAA
*
79813700 TGCCTTCGGGACTTAGCCCGG
1 TGCCTTCGGGTCTTAGCCCGG
79813721 GTATCATTCA
Statistics
Matches: 125, Mismatches: 15, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
40 124 0.99
41 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (39 bp):
TGCCTTCGGGTCTTAGCCCGGATATAACAACCGCACGAA
Found at i:79813641 original size:80 final size:80
Alignment explanation
Indices: 79813532--79813720 Score: 236
Period size: 80 Copynumber: 2.4 Consensus size: 80
79813522 TATAACCGAA
* * * *** * *
79813532 AGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGC
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGCCTTCGAGTCTTAGC
79813597 CCGGATATAA-CAACT
66 CCGGATATAATC-ACT
* * * *
79813612 CGCACGAATGCCTTCGGGTCTTAGTCCGGATATAACAACTCGCACGAATGCCTTCGAGTCTTAGC
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGCCTTCGAGTCTTAGC
79813677 CCGGATATAATCACT
66 CCGGATATAATCACT
* *
79813692 AGCATAAATGCCTTCGGGACTTAGCCCGG
1 AGCACAAATGCCTTCGGGTCTTAGCCCGG
79813721 GTATCATTCA
Statistics
Matches: 91, Mismatches: 17, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
80 90 0.99
81 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
AGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGCCTTCGAGTCTTAGC
CCGGATATAATCACT
Found at i:79815808 original size:11 final size:12
Alignment explanation
Indices: 79815791--79815819 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
79815781 TGTATATGAT
79815791 TATATGAATATA
1 TATATGAATATA
79815803 -ATATGAATATA
1 TATATGAATATA
79815814 TATATG
1 TATATG
79815820 TGCCTGGAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.69
12 5 0.31
ACGTcount: A:0.48, C:0.00, G:0.10, T:0.41
Consensus pattern (12 bp):
TATATGAATATA
Found at i:79832077 original size:27 final size:28
Alignment explanation
Indices: 79832021--79832090 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
79832011 AAATTTGTAC
79832021 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
79832049 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
79832076 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
79832091 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:79832101 original size:27 final size:27
Alignment explanation
Indices: 79832021--79832102 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
79832011 AAATTTGTAC
* *
79832021 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
79832049 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
79832076 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
79832103 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:79839904 original size:27 final size:28
Alignment explanation
Indices: 79839848--79839917 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
79839838 AAATTTGTAC
79839848 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
79839876 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
79839903 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
79839918 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:79839928 original size:27 final size:27
Alignment explanation
Indices: 79839848--79839929 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
79839838 AAATTTGTAC
* *
79839848 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
79839876 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
79839903 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
79839930 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:79860757 original size:47 final size:48
Alignment explanation
Indices: 79860467--79860864 Score: 617
Period size: 49 Copynumber: 8.3 Consensus size: 48
79860457 GTATGAGATA
79860467 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA-TGTG
*
79860516 TGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA-GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAATGTG
*
79860563 TATATATGTG-TAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAATGTG
79860611 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA-TGTG
79860660 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA-TGTG
79860709 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA-GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAATGTG
* *
79860756 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA-GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAATGTG
* * * * * * *
79860803 TATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGGAA-GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAATGTG
*
79860850 TATAAATGTGATAAG
1 TATATATGTGATAAG
79860865 TCCCGAAGGG
Statistics
Matches: 332, Mismatches: 13, Indels: 10
0.94 0.04 0.03
Matches are distributed among these distances:
46 30 0.09
47 118 0.36
48 15 0.05
49 169 0.51
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.30
Consensus pattern (48 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAATGTG
Found at i:79868231 original size:40 final size:40
Alignment explanation
Indices: 79868172--79868324 Score: 193
Period size: 40 Copynumber: 3.9 Consensus size: 40
79868162 GTATGATATT
*
79868172 TGGAATTGTATCCAGGCTTAAAAACCCGCAGGCTATATGC
1 TGGAATTGTATCCAGGCTTAAAGACCCGCAGGCTATATGC
* *
79868212 TGGAATTGTATCCATGCTTAAAGACCCACAGGCTATATGC
1 TGGAATTGTATCCAGGCTTAAAGACCCGCAGGCTATATGC
* * * *
79868252 TGGAATTATATCCGGGCATAAAGACCCGCAGGCT-TCGTGC
1 TGGAATTGTATCCAGGCTTAAAGACCCGCAGGCTAT-ATGC
* * *
79868292 TGGAATGGTATCC-GGGTTAAAGACCCGTAGGCT
1 TGGAATTGTATCCAGGCTTAAAGACCCGCAGGCT
79868325 TGCGCTGGAA
Statistics
Matches: 98, Mismatches: 14, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
39 18 0.18
40 80 0.82
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.25
Consensus pattern (40 bp):
TGGAATTGTATCCAGGCTTAAAGACCCGCAGGCTATATGC
Found at i:79875833 original size:2 final size:2
Alignment explanation
Indices: 79875826--79875856 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
79875816 TGATGCCTTG
79875826 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
79875857 CTAGATGAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:79876228 original size:39 final size:39
Alignment explanation
Indices: 79876116--79876237 Score: 167
Period size: 40 Copynumber: 3.1 Consensus size: 39
79876106 GTATGATATT
*
79876116 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATATGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCT-TGTGC
*
79876156 TGGAATTGTATCCGGGCATAAAGACCCGCAGGCTTCGTGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTT-GTGC
* *
79876196 TGGAA-TGTTATCCGGG-TTAAAGACCCGTAGGCTTGCGC
1 TGGAATTG-TATCCGGGCTTAAAGACCCGCAGGCTTGTGC
79876234 TGGA
1 TGGA
79876238 GATGTGTTTC
Statistics
Matches: 75, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
38 7 0.09
39 19 0.25
40 49 0.65
ACGTcount: A:0.23, C:0.22, G:0.30, T:0.25
Consensus pattern (39 bp):
TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTGTGC
Found at i:79879880 original size:52 final size:52
Alignment explanation
Indices: 79879818--79879921 Score: 190
Period size: 52 Copynumber: 2.0 Consensus size: 52
79879808 TTGCCAAAGT
79879818 ATGGTTTTTGGACTAATTTTAACAATATGATAGCTAAATGAACTAACTTTGC
1 ATGGTTTTTGGACTAATTTTAACAATATGATAGCTAAATGAACTAACTTTGC
* *
79879870 ATGGTTTTTGGACTAATTTTAACAATGTGATAGTTAAATGAACTAACTTTGC
1 ATGGTTTTTGGACTAATTTTAACAATATGATAGCTAAATGAACTAACTTTGC
79879922 TATTACAGAT
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 50 1.00
ACGTcount: A:0.34, C:0.11, G:0.16, T:0.39
Consensus pattern (52 bp):
ATGGTTTTTGGACTAATTTTAACAATATGATAGCTAAATGAACTAACTTTGC
Found at i:79880245 original size:42 final size:42
Alignment explanation
Indices: 79880193--79880334 Score: 151
Period size: 42 Copynumber: 3.4 Consensus size: 42
79880183 ATGAGTTTAT
* * *
79880193 GTGTAAGACCATATTTGGGATATGGCATCGTTATGAGATTTC
1 GTGTAAGACCATATCTGGGATATGGCATCGATATGAGATATC
* * * * *
79880235 GTGTAGGACCATGTCTGGGACATGGCGTCGATACGAGA-ATC
1 GTGTAAGACCATATCTGGGATATGGCATCGATATGAGATATC
* * **
79880276 GTGTAAGACCATAGCTGGGCTATTGGCATCGATATGAGATCCC
1 GTGTAAGACCATATCTGGGATA-TGGCATCGATATGAGATATC
*
79880319 ATGTAAGACCATATCT
1 GTGTAAGACCATATCT
79880335 AGGAAATGAC
Statistics
Matches: 79, Mismatches: 19, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
41 19 0.24
42 45 0.57
43 15 0.19
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.28
Consensus pattern (42 bp):
GTGTAAGACCATATCTGGGATATGGCATCGATATGAGATATC
Found at i:79881317 original size:13 final size:13
Alignment explanation
Indices: 79881301--79881336 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
79881291 CCTAGGGACA
79881301 AGGGCGTGTGCCG
1 AGGGCGTGTGCCG
79881314 AGGGCGTGTGCCG
1 AGGGCGTGTGCCG
*
79881327 AGGGCATGTG
1 AGGGCGTGTG
79881337 AAGTGTACAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.11, C:0.19, G:0.53, T:0.17
Consensus pattern (13 bp):
AGGGCGTGTGCCG
Found at i:79883201 original size:26 final size:26
Alignment explanation
Indices: 79883160--79883232 Score: 114
Period size: 25 Copynumber: 2.9 Consensus size: 26
79883150 GGAGGAAGTG
*
79883160 CAAAAAGGGC-TATGCCCCAGTTTAC
1 CAAAAAGGGCTTTTGCCCCAGTTTAC
*
79883185 CAAAAAGGGCTTTTGCCCCAGTTTAT
1 CAAAAAGGGCTTTTGCCCCAGTTTAC
79883211 C-AAAAGGGCTTTTGCCCCAGTT
1 CAAAAAGGGCTTTTGCCCCAGTT
79883233 ATTAAAAGAG
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
25 31 0.69
26 14 0.31
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
CAAAAAGGGCTTTTGCCCCAGTTTAC
Found at i:79883245 original size:25 final size:25
Alignment explanation
Indices: 79883162--79883245 Score: 109
Period size: 25 Copynumber: 3.4 Consensus size: 25
79883152 AGGAAGTGCA
* *
79883162 AAAAGGGC-TATGCCCCAGTTTACC
1 AAAAGGGCTTTTGCCCCAGTTTATC
79883186 AAAAAGGGCTTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTTGCCCCAGTTTATC
*
79883212 AAAAGGGCTTTTGCCCCAG-TTATT
1 AAAAGGGCTTTTGCCCCAGTTTATC
79883236 AAAAGAGGCT
1 AAAAG-GGCT
79883246 AGGCCTCTAG
Statistics
Matches: 54, Mismatches: 3, Indels: 4
0.89 0.05 0.07
Matches are distributed among these distances:
24 9 0.17
25 31 0.57
26 14 0.26
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTTGCCCCAGTTTATC
Found at i:79884979 original size:40 final size:40
Alignment explanation
Indices: 79884914--79885086 Score: 274
Period size: 40 Copynumber: 4.3 Consensus size: 40
79884904 TCGGATGTAA
*
79884914 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
* * *
79884954 AACCCGCACAAATGCCTTCGGGACTTAGCCCAGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
* *
79884994 AACCCGTACGAATGCCTTCGGGACTTACCCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
* *
79885034 AACCCGCACGAATGCCTTCGGGACTTAACCCGATTACAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
79885074 AACCCGCACGAAT
1 AACCCGCACGAAT
79885087 ACTATGCACA
Statistics
Matches: 121, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 121 1.00
ACGTcount: A:0.29, C:0.31, G:0.18, T:0.21
Consensus pattern (40 bp):
AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:79887266 original size:31 final size:31
Alignment explanation
Indices: 79887228--79887291 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
79887218 TGTTTACAGT
79887228 AAAGGCTTCGGCCCAATAATATGAAATATGA
1 AAAGGCTTCGGCCCAATAATATGAAATATGA
* ** *
79887259 AAAGGCTTCGGCCCAGTGTTATGAAGTATGA
1 AAAGGCTTCGGCCCAATAATATGAAATATGA
79887290 AA
1 AA
79887292 TATGAAAATG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAATAATATGAAATATGA
Found at i:79894747 original size:16 final size:15
Alignment explanation
Indices: 79894726--79894755 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
79894716 ATTTTGGTAT
79894726 ACATGATATGATATGC
1 ACATGATATG-TATGC
79894742 ACATGATATGTATG
1 ACATGATATGTATG
79894756 ATATGCACAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.33
Consensus pattern (15 bp):
ACATGATATGTATGC
Found at i:79894869 original size:25 final size:26
Alignment explanation
Indices: 79894832--79894883 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
79894822 GCTATGCCCT
*
79894832 AGTTTACCGAAAAGGGTTTTTACCCC
1 AGTTTACCGAAAAGGGCTTTTACCCC
*
79894858 AGTTTATC-AAAAGGGCTTTTACCCC
1 AGTTTACCGAAAAGGGCTTTTACCCC
79894883 A
1 A
79894884 ATTATTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 17 0.71
26 7 0.29
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (26 bp):
AGTTTACCGAAAAGGGCTTTTACCCC
Found at i:79894899 original size:25 final size:25
Alignment explanation
Indices: 79894841--79894899 Score: 75
Period size: 25 Copynumber: 2.4 Consensus size: 25
79894831 TAGTTTACCG
* *
79894841 AAAAGGGTTTTTACCCCAGTTTATC
1 AAAAGGGCTTTTACCCCAGATTATC
*
79894866 AAAAGGGCTTTTACCCCA-ATTATT
1 AAAAGGGCTTTTACCCCAGATTATC
79894890 AAAAGAGGCT
1 AAAAG-GGCT
79894900 AGGCCTCCAG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
24 9 0.30
25 21 0.70
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.31
Consensus pattern (25 bp):
AAAAGGGCTTTTACCCCAGATTATC
Found at i:79902505 original size:30 final size:29
Alignment explanation
Indices: 79902411--79902512 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
79902401 TATAGTGAAT
* * *
79902411 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
79902440 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
79902468 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
79902498 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
79902513 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:79905324 original size:47 final size:47
Alignment explanation
Indices: 79905255--79905350 Score: 192
Period size: 47 Copynumber: 2.0 Consensus size: 47
79905245 TTTCAAAGAT
79905255 TGACTTGAGATCTGGGTACTACTAGCTGCGAGTAAAAGAGTCGGATG
1 TGACTTGAGATCTGGGTACTACTAGCTGCGAGTAAAAGAGTCGGATG
79905302 TGACTTGAGATCTGGGTACTACTAGCTGCGAGTAAAAGAGTCGGATG
1 TGACTTGAGATCTGGGTACTACTAGCTGCGAGTAAAAGAGTCGGATG
79905349 TG
1 TG
79905351 CCTAAAACTG
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 49 1.00
ACGTcount: A:0.27, C:0.15, G:0.32, T:0.26
Consensus pattern (47 bp):
TGACTTGAGATCTGGGTACTACTAGCTGCGAGTAAAAGAGTCGGATG
Found at i:79910476 original size:39 final size:39
Alignment explanation
Indices: 79910378--79910480 Score: 154
Period size: 39 Copynumber: 2.7 Consensus size: 39
79910368 TTCGGGACTT
* * *
79910378 TAAGCCCGGATATATTTCCAACATATAGCCTGCGGACCC
1 TAAGTCCGGATATAATTCCAGCATATAGCCTGCGGACCC
*
79910417 TAAGTCCGGATATAATTCCAGCATATAGCCTGCGGACCT
1 TAAGTCCGGATATAATTCCAGCATATAGCCTGCGGACCC
*
79910456 TAAGTCTGGATATAATTCCAG-ATAT
1 TAAGTCCGGATATAATTCCAGCATAT
79910481 CATGCATATT
Statistics
Matches: 59, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
38 4 0.07
39 55 0.93
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.27
Consensus pattern (39 bp):
TAAGTCCGGATATAATTCCAGCATATAGCCTGCGGACCC
Found at i:79922181 original size:93 final size:93
Alignment explanation
Indices: 79922069--79922239 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
79922059 GCCCAAAAGT
* *
79922069 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
79922134 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* *
79922162 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
79922227 CGAGTTCGGATGC
66 CGAGCTCGGATGC
79922240 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:79922236 original size:46 final size:46
Alignment explanation
Indices: 79922065--79922236 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
79922055 ACCCGCCCAA
* * *
79922065 AAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCAT
1 AAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCAT
* *
79922111 AAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTC-T
1 AAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-ATTTGCATC-CAT
* *
79922161 ---CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCAT
1 AAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCAT
*
79922204 AAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 AAGTGAACTCGGACTCAACTCAACGAGCTCGGA
79922237 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 10, Indels: 18
0.79 0.07 0.13
Matches are distributed among these distances:
42 1 0.01
43 8 0.07
44 1 0.01
46 61 0.57
47 28 0.26
49 1 0.01
50 6 0.06
51 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
AAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCAT
Found at i:79924664 original size:30 final size:30
Alignment explanation
Indices: 79924620--79924708 Score: 94
Period size: 30 Copynumber: 3.0 Consensus size: 30
79924610 CAAAGATAAC
*
79924620 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAACCCGGAATAAAGAAATCCAAGATA
*
79924649 GAGAAACCCGGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGGAATAAAGAAATCCAAG-ATA
* * *
79924679 AAGAGATCCAGG-ATAAAGAAACCCAAGATA
1 AAGA-AACCCGGAATAAAGAAATCCAAGATA
79924709 CGATACTATG
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
29 9 0.18
30 34 0.68
31 7 0.14
ACGTcount: A:0.56, C:0.16, G:0.18, T:0.10
Consensus pattern (30 bp):
AAGAAACCCGGAATAAAGAAATCCAAGATA
Found at i:79924668 original size:15 final size:14
Alignment explanation
Indices: 79924620--79924702 Score: 58
Period size: 15 Copynumber: 5.6 Consensus size: 14
79924610 CAAAGATAAC
*
79924620 AAGAAAACCGAATA
1 AAGAAACCCGAATA
* *
79924634 AAGAAATCCAAGATA
1 AAGAAACCCGA-ATA
*
79924649 GAGAAACCCGGAATA
1 AAGAAACCC-GAATA
*
79924664 AAGAAATCCAGAATA
1 AAGAAA-CCCGAATA
* * *
79924679 AAGAGATCCAGGATA
1 AAGA-AACCCGAATA
79924694 AAGAAACCC
1 AAGAAACCC
79924703 AAGATACGAT
Statistics
Matches: 54, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
14 12 0.22
15 38 0.70
16 4 0.07
ACGTcount: A:0.55, C:0.17, G:0.18, T:0.10
Consensus pattern (14 bp):
AAGAAACCCGAATA
Found at i:79924708 original size:15 final size:15
Alignment explanation
Indices: 79924631--79924708 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
79924621 AGAAAACCGA
79924631 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* **
79924646 ATAGAGAAA-CCCGG
1 ATAAAGAAATCCAAG
79924660 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
79924675 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
79924691 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
79924706 ATA
1 ATA
79924709 CGATACTATG
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
14 3 0.06
15 44 0.88
16 3 0.06
ACGTcount: A:0.55, C:0.15, G:0.18, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:79927738 original size:93 final size:93
Alignment explanation
Indices: 79927626--79927796 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
79927616 CGCCCAAAGT
* *
79927626 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
79927691 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* * *
79927719 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
79927784 CGAGTTCGGATGC
66 CGAGCTCGGATGC
79927797 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:79927793 original size:46 final size:46
Alignment explanation
Indices: 79927622--79927793 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
79927612 AACCCGCCCA
* * *
79927622 AAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCAT
1 AAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCAT
* * *
79927668 AAGTGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTC-T
1 AAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-ATTTGCATC-CAT
* *
79927718 ---CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCAT
1 AAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCAT
*
79927761 AAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 AAGTGAACTCGGACTCAACTCAACGAGCTCGGA
79927794 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 1 0.01
43 8 0.08
44 1 0.01
46 60 0.57
47 27 0.26
49 1 0.01
50 6 0.06
51 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
AAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCAT
Found at i:79934836 original size:23 final size:23
Alignment explanation
Indices: 79934805--79934852 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
79934795 TTTCTTGTTC
*
79934805 AACTTTGGAGATAGGGTATTGAT
1 AACTCTGGAGATAGGGTATTGAT
79934828 AACTCTGGAGATAGGGTATTGAT
1 AACTCTGGAGATAGGGTATTGAT
79934851 AA
1 AA
79934853 TCATTATGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.33, C:0.06, G:0.29, T:0.31
Consensus pattern (23 bp):
AACTCTGGAGATAGGGTATTGAT
Found at i:79937194 original size:53 final size:53
Alignment explanation
Indices: 79937012--79937223 Score: 201
Period size: 53 Copynumber: 3.9 Consensus size: 53
79937002 ATTAGGGTTT
* * * *
79937012 AAGGATACCAAGTAAGACCATGCCAAGGCATGG-AATTGGTAAGTTTTACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAA-TGGTAAG-TTCAAAAGGC
* * * * * * *
79937066 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACAATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTCAA-AAGGC
* * * * *
79937121 AAAGATCCCATGTAATACCATGCCAAGGCATGGCAATGGTGAGTTCAAAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCAAAAGGC
* ** *
79937174 AAGGATACCATGTAAGACCATGTCAAGACATGAAAATGGTAAGTTTAAAA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCAAAA
79937224 AGGAAAGGTA
Statistics
Matches: 123, Mismatches: 32, Indels: 7
0.76 0.20 0.04
Matches are distributed among these distances:
53 46 0.37
54 38 0.31
55 39 0.32
ACGTcount: A:0.41, C:0.17, G:0.23, T:0.20
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCAAAAGGC
Found at i:79943174 original size:40 final size:39
Alignment explanation
Indices: 79943114--79943301 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 39
79943104 TGAATGATAC
* * * *
79943114 CCGGCCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG-TTATAT
*
79943154 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGTTATAT
*
79943194 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGTTATAT
* * * * *
79943234 CCAGGATAAGACCCGAAGGCATTTGTGCAAGT-TACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGT--TATAT
* *
79943274 CCGGGTTAAGACCCGAAGGCAATTGTGC
1 CCGGGCTAAGACCCGAAGGCATTTGTGC
79943302 TTGCGGTTAT
Statistics
Matches: 131, Mismatches: 14, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
38 1 0.01
39 1 0.01
40 127 0.97
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (39 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGTTATAT
Found at i:79951441 original size:80 final size:80
Alignment explanation
Indices: 79951244--79951446 Score: 219
Period size: 80 Copynumber: 2.5 Consensus size: 80
79951234 TGAATGATAC
* * * * * *
79951244 CCGGGCTAAGTCTCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCATTCATGCGAGCGGTTATATCCGGGCTAAGACCCGAAGGCATTCG
* *** *
79951309 TACGAGTTGTTATAT
66 TACAAGTTACCAAAT
** *
79951324 CCGGGCTAAGACCCGAAGGCATTCATGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATTCATGCGAGCGGTTATATCCGGGCTAAGACCCGAAGGCATTCG
*
79951389 TGCAAGTTACCAAAT
66 TACAAGTTACCAAAT
* * **
79951404 CCGGGTTAAGACCCGAAGGCAATT-GTGCTTGCGGTTATATCCG
1 CCGGGCTAAGACCCGAAGGC-ATTCATGCGAGCGGTTATATCCG
79951447 ACTAAATTCC
Statistics
Matches: 103, Mismatches: 19, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
80 100 0.97
81 3 0.03
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTCATGCGAGCGGTTATATCCGGGCTAAGACCCGAAGGCATTCG
TACAAGTTACCAAAT
Found at i:79951446 original size:40 final size:40
Alignment explanation
Indices: 79951244--79951424 Score: 220
Period size: 40 Copynumber: 4.5 Consensus size: 40
79951234 TGAATGATAC
* * ** *
79951244 CCGGGCTAAGTCTCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
*
79951284 CCGGGCTAAGACCCGAAGGCATTCGTACGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
*
79951324 CCGGGCTAAGACCCGAAGGCATTCATGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
* * *** *
79951364 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
*
79951404 CCGGGTTAAGACCCGAAGGCA
1 CCGGGCTAAGACCCGAAGGCA
79951425 ATTGTGCTTG
Statistics
Matches: 124, Mismatches: 16, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
40 122 0.98
41 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
Found at i:79954440 original size:56 final size:56
Alignment explanation
Indices: 79954380--79954624 Score: 357
Period size: 56 Copynumber: 4.4 Consensus size: 56
79954370 AGACAGGGTT
* *
79954380 TTACTCGCACACATATATCGAAGTCACATATTGATGCCAACGTATTAAACATGGTC
1 TTACTCGCACACATATATCGAAGTCACATATCGATGCCAACGTATTAAACGTGGTC
* ** * *
79954436 TTACTCGCACACATATATCGAAATCACATATTAATGCTAATGTATTAAACGTGGTC
1 TTACTCGCACACATATATCGAAGTCACATATCGATGCCAACGTATTAAACGTGGTC
* *
79954492 TTACTCGCACACATATATCGAAGTGACATATCGATGCCAACATATTAAACGTGGTC
1 TTACTCGCACACATATATCGAAGTCACATATCGATGCCAACGTATTAAACGTGGTC
* * * *
79954548 TTACTCACATACATATACCGGAA-TCACATATCGATGCCAACGTATTAAATGTGGTC
1 TTACTCGCACACATATATC-GAAGTCACATATCGATGCCAACGTATTAAACGTGGTC
79954604 TTACTCGCACACATATATCGA
1 TTACTCGCACACATATATCGA
79954625 TGCCATGGTC
Statistics
Matches: 167, Mismatches: 21, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
55 2 0.01
56 162 0.97
57 3 0.02
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.29
Consensus pattern (56 bp):
TTACTCGCACACATATATCGAAGTCACATATCGATGCCAACGTATTAAACGTGGTC
Found at i:79971303 original size:3 final size:3
Alignment explanation
Indices: 79971295--79971320 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
79971285 AACATCAGCT
79971295 TCA TCA TCA TCA TCA TCA TCA TCA TC
1 TCA TCA TCA TCA TCA TCA TCA TCA TC
79971321 TATTAAAACT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.35, G:0.00, T:0.35
Consensus pattern (3 bp):
TCA
Found at i:79972388 original size:24 final size:24
Alignment explanation
Indices: 79972356--79972404 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
79972346 ATAAGGCGTT
79972356 ACATAACCAATTTGACCATTCATC
1 ACATAACCAATTTGACCATTCATC
79972380 ACATAACCAATTTGACCATTCATC
1 ACATAACCAATTTGACCATTCATC
79972404 A
1 A
79972405 AGCTTCAAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.39, C:0.29, G:0.04, T:0.29
Consensus pattern (24 bp):
ACATAACCAATTTGACCATTCATC
Found at i:79973517 original size:34 final size:34
Alignment explanation
Indices: 79973470--79973537 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
79973460 CATCGGTACA
79973470 TAGTACATGCTAAATAAAACACTAACACATAGTG
1 TAGTACATGCTAAATAAAACACTAACACATAGTG
*
79973504 TAGTACATTCTAAATAAAACACTAACACATAGTG
1 TAGTACATGCTAAATAAAACACTAACACATAGTG
79973538 CCTGCTAATA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.47, C:0.18, G:0.10, T:0.25
Consensus pattern (34 bp):
TAGTACATGCTAAATAAAACACTAACACATAGTG
Found at i:79973545 original size:29 final size:29
Alignment explanation
Indices: 79973467--79973553 Score: 86
Period size: 34 Copynumber: 2.9 Consensus size: 29
79973457 CATCATCGGT
*
79973467 ACATAGTACATGCTAAATAAAACACTAAC
1 ACATAGTGCATGCTAAATAAAACACTAAC
*
79973496 ACATAGTGTAGTACATTCTAAATAAAACACTAAC
1 ACATA--GT-G--CATGCTAAATAAAACACTAAC
* *
79973530 ACATAGTGCCTGCT-AATACAACAC
1 ACATAGTGCATGCTAAATAAAACAC
79973554 CAGCACAAAG
Statistics
Matches: 48, Mismatches: 5, Indels: 11
0.75 0.08 0.17
Matches are distributed among these distances:
28 9 0.19
29 9 0.19
31 3 0.06
32 2 0.04
34 25 0.52
ACGTcount: A:0.46, C:0.22, G:0.09, T:0.23
Consensus pattern (29 bp):
ACATAGTGCATGCTAAATAAAACACTAAC
Found at i:79973579 original size:26 final size:26
Alignment explanation
Indices: 79973550--79973622 Score: 83
Period size: 26 Copynumber: 2.8 Consensus size: 26
79973540 TGCTAATACA
* *
79973550 ACACCAGCACAAAGCTTTCTAAATAT
1 ACACCAGCACAAAGCTTGCTAAAAAT
* * *
79973576 ACACTAGCTCGAAGCTTGCTAAAAAT
1 ACACCAGCACAAAGCTTGCTAAAAAT
* *
79973602 ACACCAGCAGAAAGCCTGCTA
1 ACACCAGCACAAAGCTTGCTA
79973623 TGCCTCAATG
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
26 37 1.00
ACGTcount: A:0.40, C:0.27, G:0.14, T:0.19
Consensus pattern (26 bp):
ACACCAGCACAAAGCTTGCTAAAAAT
Found at i:79979320 original size:22 final size:22
Alignment explanation
Indices: 79979278--79979321 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
79979268 CCTAGAATTG
* *
79979278 ACTAAATCGTAACTCTCATACC
1 ACTAAATCGTAACACCCATACC
79979300 ACTAAAT-GTAACACCCTATACC
1 ACTAAATCGTAACACCC-ATACC
79979322 CAATTTAATC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.39, C:0.32, G:0.05, T:0.25
Consensus pattern (22 bp):
ACTAAATCGTAACACCCATACC
Found at i:79981624 original size:34 final size:34
Alignment explanation
Indices: 79981548--79981708 Score: 137
Period size: 34 Copynumber: 4.7 Consensus size: 34
79981538 TTCAGTTAGA
* * * * *
79981548 GCCTTAGCCCATTCCAGCAACAGTATCAGT-GGG
1 GCCTTAGCCCATTTCAGTAATAGTAGCAGTCTGG
* * *
79981581 GCCTAAGCCCATATT-AGTAATAGTGGCAATCTGG
1 GCCTTAGCCCAT-TTCAGTAATAGTAGCAGTCTGG
* *
79981615 GCCTTAGCCCATTTCAATAACAGTAGCAGTCTGG
1 GCCTTAGCCCATTTCAGTAATAGTAGCAGTCTGG
** * * *
79981649 GTTTTATCCCATTTTAGTAATAGTAATCAGTCTGG
1 GCCTTAGCCCATTTCAGTAATAGT-AGCAGTCTGG
**
79981684 GTTTTAGCCCATTTCAGTAATAGTA
1 GCCTTAGCCCATTTCAGTAATAGTA
79981709 ATCAGTGCAG
Statistics
Matches: 102, Mismatches: 22, Indels: 7
0.78 0.17 0.05
Matches are distributed among these distances:
33 23 0.23
34 48 0.47
35 31 0.30
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (34 bp):
GCCTTAGCCCATTTCAGTAATAGTAGCAGTCTGG
Found at i:79981683 original size:35 final size:35
Alignment explanation
Indices: 79981618--79981714 Score: 142
Period size: 35 Copynumber: 2.8 Consensus size: 35
79981608 AATCTGGGCC
* * *
79981618 TTAGCCCATTTCAATAACAGT-AGCAGTCTGGGTT
1 TTAGCCCATTTCAGTAATAGTAATCAGTCTGGGTT
* *
79981652 TTATCCCATTTTAGTAATAGTAATCAGTCTGGGTT
1 TTAGCCCATTTCAGTAATAGTAATCAGTCTGGGTT
79981687 TTAGCCCATTTCAGTAATAGTAATCAGT
1 TTAGCCCATTTCAGTAATAGTAATCAGT
79981715 GCAGTAACCA
Statistics
Matches: 55, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
34 17 0.31
35 38 0.69
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.37
Consensus pattern (35 bp):
TTAGCCCATTTCAGTAATAGTAATCAGTCTGGGTT
Found at i:79981721 original size:18 final size:18
Alignment explanation
Indices: 79981698--79981756 Score: 66
Period size: 18 Copynumber: 3.3 Consensus size: 18
79981688 TAGCCCATTT
*
79981698 CAGTAATAGTAATCAGTG
1 CAGTAACAGTAATCAGTG
* *
79981716 CAGTAACCA-TGATCAATG
1 CAGTAA-CAGTAATCAGTG
*
79981734 CAATAACAGTAATCAGTG
1 CAGTAACAGTAATCAGTG
79981752 CAGTA
1 CAGTA
79981757 TGCAAATAGA
Statistics
Matches: 32, Mismatches: 7, Indels: 4
0.74 0.16 0.09
Matches are distributed among these distances:
17 2 0.06
18 29 0.91
19 1 0.03
ACGTcount: A:0.41, C:0.17, G:0.19, T:0.24
Consensus pattern (18 bp):
CAGTAACAGTAATCAGTG
Found at i:79982041 original size:23 final size:23
Alignment explanation
Indices: 79982015--79982064 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
79982005 ACCCCATGCA
79982015 ATGCAACATA-ATATTATACATGG-
1 ATGCAACATACATA-TA-ACATGGC
*
79982038 ATGCGACATACATATAACATGGC
1 ATGCAACATACATATAACATGGC
79982061 ATGC
1 ATGC
79982065 TCAAATACAG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
22 6 0.25
23 15 0.62
24 3 0.12
ACGTcount: A:0.40, C:0.18, G:0.16, T:0.26
Consensus pattern (23 bp):
ATGCAACATACATATAACATGGC
Found at i:79982184 original size:27 final size:27
Alignment explanation
Indices: 79982154--79982523 Score: 499
Period size: 27 Copynumber: 13.7 Consensus size: 27
79982144 GGTATTTCGG
* * *
79982154 TCATTTTATCACCTAAGGGCAAAATCT
1 TCATTTTATCACATAAGGGAAAAATCA
*
79982181 TCATTTTATCACATAAGGGAAAAATCG
1 TCATTTTATCACATAAGGGAAAAATCA
*
79982208 TCATTTTATCACATAAGGGCAAAATCA
1 TCATTTTATCACATAAGGGAAAAATCA
* *
79982235 TCATTTTATCACCTAAGGGAAAAATCG
1 TCATTTTATCACATAAGGGAAAAATCA
* * **
79982262 TCATTTTATCACCTAAGGGCAAAATTG
1 TCATTTTATCACATAAGGGAAAAATCA
*
79982289 TCATTTTATCACATAAGGGAAAAATCG
1 TCATTTTATCACATAAGGGAAAAATCA
* * *
79982316 TCATTTTCTCACTTAAGGGAAAAATCG
1 TCATTTTATCACATAAGGGAAAAATCA
*
79982343 TCATTTTATCACCTAAGGGAAAAATCA
1 TCATTTTATCACATAAGGGAAAAATCA
* *
79982370 TCATTTTATCACATGAGGGCAAAAT-A
1 TCATTTTATCACATAAGGGAAAAATCA
* * *
79982396 GTCATTTGATCACATGAGGGCAAAATCA
1 -TCATTTTATCACATAAGGGAAAAATCA
* *
79982424 TCATTTTATCACATGAGGGGAAAATCA
1 TCATTTTATCACATAAGGGAAAAATCA
79982451 TCATTTTATCACATAAGGGAAAAATCA
1 TCATTTTATCACATAAGGGAAAAATCA
*
79982478 TCATTTTATCACATATGGGAAAAATCA
1 TCATTTTATCACATAAGGGAAAAATCA
*
79982505 TCATTTTATCACATGAGGG
1 TCATTTTATCACATAAGGG
79982524 TTCAGGTACG
Statistics
Matches: 312, Mismatches: 29, Indels: 4
0.90 0.08 0.01
Matches are distributed among these distances:
26 1 0.00
27 310 0.99
28 1 0.00
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.31
Consensus pattern (27 bp):
TCATTTTATCACATAAGGGAAAAATCA
Found at i:79985025 original size:40 final size:40
Alignment explanation
Indices: 79984959--79985125 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
79984949 AAATTGAATG
* * *
79984959 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
79984998 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
79985038 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
79985078 CTATCCGGGCTAAGACTCGAAGGCAATTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
79985118 ATATCCGG
1 ATATCCGG
79985126 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 84 0.82
41 3 0.03
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:79992910 original size:40 final size:40
Alignment explanation
Indices: 79992844--79993010 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
79992834 AAATTGAATG
* * *
79992844 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
79992883 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
79992923 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* ** *
79992963 CTATCCGGGCTAAGACCCGAAGGCAATTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
79993003 ATATCCGG
1 ATATCCGG
79993011 TTATATTCCG
Statistics
Matches: 104, Mismatches: 19, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 85 0.82
41 3 0.03
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:79996783 original size:37 final size:37
Alignment explanation
Indices: 79996724--79996832 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
79996714 AGCTCAGATG
* * *
79996724 AAATCTCCACACGAAGTTATCGGGTCTTACCTGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
79996761 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
79996798 TAATCTCCACACGTAATCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
79996833 ATATATTTCC
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:79997031 original size:48 final size:48
Alignment explanation
Indices: 79996974--79997371 Score: 417
Period size: 48 Copynumber: 8.0 Consensus size: 48
79996964 TATACACACG
* * * * * *
79996974 TCTCCTACATATTTCACACTAGCCCTTCAGCTTTACCATATATACGTA
1 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
* *
79997022 TCTCATACATATTTCACACTAGCCATTCGGCTTTATCACATATACATA
1 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
* * * * * * *
79997070 TCTCATATATATTTCACA-TA-CATATTTC-ACGTTAGCCATTCGGCTTTACCACA
1 TCTCATACATATTTCACATTAGC-CA-TTCGGCTTTA-CCA--C--ATATA-CATA
* * * *
79997123 TATACATATCTCATACATATT-TCACATTAGCCATTCGGCTTTACCACATATACATA
1 TCT-CATA---CAT--AT-TTCACA-TTA-GCCATTCGGCTTTACCACATATACATA
*
79997179 TCTCATACATATTTCACATTAGCCATTCAGCTTTACCACATATACATA
1 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
*
79997227 TCTCATACATATTTCACATTAGTCATTCGGCTTTACCACATATACATA
1 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
79997275 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
1 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
*
79997323 TCTCATACATATTTCACGTTAGCCATTCGGCTTTACCACATATACATA
1 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
79997371 T
1 T
79997372 ATTTATCTTG
Statistics
Matches: 296, Mismatches: 33, Indels: 42
0.80 0.09 0.11
Matches are distributed among these distances:
46 1 0.00
47 7 0.02
48 231 0.78
49 3 0.01
50 5 0.02
52 6 0.02
53 5 0.02
54 4 0.01
55 4 0.01
56 5 0.02
57 5 0.02
59 5 0.02
60 2 0.01
61 7 0.02
62 5 0.02
63 1 0.00
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.36
Consensus pattern (48 bp):
TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
Found at i:79997089 original size:13 final size:13
Alignment explanation
Indices: 79997057--79997099 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 13
79997047 TTCGGCTTTA
* *
79997057 TCACATATACATA
1 TCACATATATATT
*
79997070 TCTCATATATATT
1 TCACATATATATT
*
79997083 TCACATACATATT
1 TCACATATATATT
79997096 TCAC
1 TCAC
79997100 GTTAGCCATT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.37, C:0.23, G:0.00, T:0.40
Consensus pattern (13 bp):
TCACATATATATT
Found at i:79997090 original size:61 final size:61
Alignment explanation
Indices: 79997025--79997149 Score: 214
Period size: 61 Copynumber: 2.0 Consensus size: 61
79997015 ATACGTATCT
* *
79997025 CATACATATTTCACACTAGCCATTCGGCTTTATCACATATACATATCTCATATATATTTCA
1 CATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
**
79997086 CATACATATTTCACGTTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 CATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
79997147 CAT
1 CAT
79997150 TAGCCATTCG
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
61 60 1.00
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.37
Consensus pattern (61 bp):
CATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
Found at i:79997192 original size:96 final size:96
Alignment explanation
Indices: 79997086--79997371 Score: 536
Period size: 96 Copynumber: 3.0 Consensus size: 96
79997076 ATATATTTCA
*
79997086 CATACATATTTCACGTTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATT
1 CATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATT
79997151 AGCCATTCGGCTTTACCACATATACATATCT
66 AGCCATTCGGCTTTACCACATATACATATCT
*
79997182 CATACATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTCATACATATTTCACATT
1 CATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATT
*
79997247 AGTCATTCGGCTTTACCACATATACATATCT
66 AGCCATTCGGCTTTACCACATATACATATCT
*
79997278 CATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACGTT
1 CATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATT
79997343 AGCCATTCGGCTTTACCACATATACATAT
66 AGCCATTCGGCTTTACCACATATACATAT
79997372 ATTTATCTTG
Statistics
Matches: 184, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
96 184 1.00
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.36
Consensus pattern (96 bp):
CATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATT
AGCCATTCGGCTTTACCACATATACATATCT
Found at i:79997254 original size:144 final size:144
Alignment explanation
Indices: 79997086--79997371 Score: 536
Period size: 144 Copynumber: 2.0 Consensus size: 144
79997076 ATATATTTCA
*
79997086 CATACATATTTCACGTTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATT
1 CATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATT
79997151 AGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCAGCTTTACC
66 AGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCAGCTTTACC
79997216 ACATATACATATCT
131 ACATATACATATCT
*
79997230 CATACATATTTCACATTAGTCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATT
1 CATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATT
* *
79997295 AGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACGTTAGCCATTCGGCTTTACC
66 AGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCAGCTTTACC
79997360 ACATATACATAT
131 ACATATACATAT
79997372 ATTTATCTTG
Statistics
Matches: 138, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
144 138 1.00
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.36
Consensus pattern (144 bp):
CATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATT
AGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCAGCTTTACC
ACATATACATATCT
Found at i:80023900 original size:43 final size:42
Alignment explanation
Indices: 80023839--80024008 Score: 132
Period size: 43 Copynumber: 4.0 Consensus size: 42
80023829 ATAGGATTTC
80023839 CGATATGTG-TTCTTATGTAAGACCACGTCTGGGATGTTGGCAT
1 CGATATGTGATTC--ATGTAAGACCACGTCTGGGATGTTGGCAT
* * * ** * *
80023882 CGATATGTGATTACATGTAAGACTATGTCTTGGACATCGGTAT
1 CGATATGTGATT-CATGTAAGACCACGTCTGGGATGTTGGCAT
* * *
80023925 TG-TATTTGATTCATGTAAGACC-CTGTCTGGGACAG-TGGCAT
1 CGATATGTGATTCATGTAAGACCAC-GTCTGGGA-TGTTGGCAT
** * *
80023966 CGATATGTGATTGCATGTAAGATAACTTCTGGGATGTTAGCAT
1 CGATATGTGATT-CATGTAAGACCACGTCTGGGATGTTGGCAT
80024009 TGTACGATAT
Statistics
Matches: 96, Mismatches: 23, Indels: 16
0.71 0.17 0.12
Matches are distributed among these distances:
41 22 0.23
42 17 0.18
43 53 0.55
44 3 0.03
45 1 0.01
ACGTcount: A:0.25, C:0.15, G:0.26, T:0.35
Consensus pattern (42 bp):
CGATATGTGATTCATGTAAGACCACGTCTGGGATGTTGGCAT
Found at i:80029662 original size:47 final size:47
Alignment explanation
Indices: 80029609--80029844 Score: 312
Period size: 47 Copynumber: 5.0 Consensus size: 47
80029599 AGGATTTAAG
* *
80029609 GTGATGAATGTGAACCTGCATATATGTGATAAGGCCGAATGCCCAAT
1 GTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAAT
* *
80029656 GTGATGAATATGAACATGCATATATGAGATAAGGCCGAATGGCCAAT
1 GTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAAT
* *
80029703 GTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAAT
1 GTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAAT
** * *
80029750 GTGATGAATGTGAATGTGCATATATGAGATAAGGCAGAATGGCCAAT
1 GTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAAT
* * ** * *
80029797 GTGATGAACGTGAA-AGTGTATATATGTGGCAAAGCCGAATGGCTAAT
1 GTGATGAATGTGAACA-TGCATATATGTGATAAGGCCGAATGGCCAAT
80029844 G
1 G
80029845 CGAAACGTGT
Statistics
Matches: 165, Mismatches: 23, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
47 165 1.00
ACGTcount: A:0.34, C:0.12, G:0.29, T:0.25
Consensus pattern (47 bp):
GTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAAT
Found at i:80029754 original size:22 final size:22
Alignment explanation
Indices: 80029727--80029801 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
80029717 CATGCATATG
*
80029727 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCAGAATGGCCAA
* * *
80029749 TGTGATGAATG-TGAATGTGCATATA
1 TGTGAT-AAGGCAGAATG-GC-CA-A
*
80029774 TGAGATAAGGCAGAATGGCCAA
1 TGTGATAAGGCAGAATGGCCAA
80029796 TGTGAT
1 TGTGAT
80029802 GAACGTGAAA
Statistics
Matches: 40, Mismatches: 8, Indels: 10
0.69 0.14 0.17
Matches are distributed among these distances:
22 17 0.43
23 6 0.15
24 6 0.15
25 11 0.28
ACGTcount: A:0.33, C:0.11, G:0.31, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCAGAATGGCCAA
Found at i:80029902 original size:46 final size:46
Alignment explanation
Indices: 80029818--80029906 Score: 124
Period size: 46 Copynumber: 1.9 Consensus size: 46
80029808 GAAAGTGTAT
* *
80029818 ATATGTGGCAAAGCCGAATGGCTAATGCGAAACGTGTATGAGACGG
1 ATATGTGGCAAAGCCAAATGGCTAATGCGAAACATGTATGAGACGG
* * * *
80029864 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGA
1 ATATGTGGCAAAGCCAAATGGCTAATGCGAAACATGTATGAGA
80029907 TGTGTATATA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
46 37 1.00
ACGTcount: A:0.35, C:0.11, G:0.30, T:0.24
Consensus pattern (46 bp):
ATATGTGGCAAAGCCAAATGGCTAATGCGAAACATGTATGAGACGG
Found at i:80034100 original size:29 final size:27
Alignment explanation
Indices: 80034066--80034168 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
80034056 TACTCAATCA
*
80034066 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
80034095 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
80034124 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
80034153 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
80034169 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:80041896 original size:29 final size:27
Alignment explanation
Indices: 80041862--80041964 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
80041852 TACTCAATCA
*
80041862 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
80041891 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
80041920 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
80041949 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
80041965 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:80047535 original size:46 final size:46
Alignment explanation
Indices: 80047485--80047660 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
80047475 TGGTTGAGCA
80047485 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
80047531 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
80047576 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
80047624 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
80047661 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:80047641 original size:93 final size:93
Alignment explanation
Indices: 80047482--80047653 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
80047472 GGATGGTTGA
* *
80047482 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
80047547 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
80047575 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
80047640 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
80047654 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:80055077 original size:46 final size:46
Alignment explanation
Indices: 80055027--80055201 Score: 182
Period size: 46 Copynumber: 3.8 Consensus size: 46
80055017 TGGTTGAGCA
80055027 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
80055073 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
80055118 CATCCGAACTCGTTGAGTTGAGT-CGAGTTTACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
80055165 -CCCAAGCTCGTTGAGTTGAGTTCGAGTTCGCTTATGG
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
80055202 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 11, Indels: 22
0.76 0.08 0.16
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
44 4 0.04
45 18 0.17
46 48 0.45
47 24 0.22
49 4 0.04
50 2 0.02
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:80055182 original size:92 final size:93
Alignment explanation
Indices: 80055024--80055194 Score: 283
Period size: 92 Copynumber: 1.8 Consensus size: 93
80055014 GGATGGTTGA
* *
80055024 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCCAACTCGTTGAGT
80055089 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
80055117 GCATCCGAACTCGTTGAGTTGAGT-CGAGTTTACTTATGGATGCGAACG-CCCAAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCCAA-CTCGTTGAG
*
80055180 TTGAGTTCGAGTTCG
65 TTGAGTCCGAGTTCG
80055195 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
91 4 0.05
92 45 0.62
93 24 0.33
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCCAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:80060631 original size:754 final size:754
Alignment explanation
Indices: 80059318--80060826 Score: 2813
Period size: 754 Copynumber: 2.0 Consensus size: 754
80059308 TATCAAGCTT
80059318 GTGTAACACCCCAAACCCGAGACCATCGCCGGTGTCGGACACGAGGGGTTAACGAGACAAATCCT
1 GTGTAACACCCCAAACCCGAGACCATCGCCGGTGTCGGACACGAGGGGTTAACGAGACAAATCCT
80059383 CTTAAAGTACCGACCAATTTGGCATTTCTGGACAGGCTGGAAAACTGCATCACCGTCGCCTTAAA
66 CTTAAAGTACCGACCAATTTGGCATTTCTGGACAGGCTGGAAAACTGCATCACCGTCGCCTTAAA
*
80059448 AATCATATCTCGAGTTTCAAAACTCGGAAACTGGTTTCGTAAATTTTCCCTGAATTTAGACTCAT
131 AATCATATCTCGAGTTCCAAAACTCGGAAACTGGTTTCGTAAATTTTCCCTGAATTTAGACTCAT
*
80059513 ATACCCATCCATGGATTTATTTTTAGAATTTTTGGTTGTGCCAATTGGTACAGTTTATTAGTTAA
196 ATACCCATCCATGGATTTATTTTTAGAATTTTTGGTTGGGCCAATTGGTACAGTTTATTAGTTAA
*
80059578 AGTCACCCATGTTACAGGGATCGACTGCTCTGACCTTCGCACGTTACAACTTGAATATCTCTCTG
261 AGTCACCCATGTTACAGGGATCGACTGCTCTGACCTCCGCACGTTACAACTTGAATATCTCTCTG
80059643 TACAGGGATTTAATACTGGTGCCGTTTGTTTCTAATGAAACTAGACTCAAAATGGAATCTGAACA
326 TACAGGGATTTAATACTGGTGCCGTTTGTTTCTAATGAAACTAGACTCAAAATGGAATCTGAACA
*
80059708 TATAAGGCATGACTCCTAATTATTTCTGGATAATTTATGGTAAATTTTCAAAGTCGCGACAGGGG
391 TATAAGGCATGACTCCTAATTATTTCTGGATAATTTATGGTAAATTTTCAAAGTCACGACAGGGG
* *
80059773 ACCCAGAAACCGTTCTGGCCCTGTCTCACGAGAACTTTAATATTTCTCAGTATACTGCTCATATG
456 ACCCAGAAACCGTTCTGGCCCTGTCTCACGAGAACTTTAATATCTCCCAGTATACTGCTCATATG
* *
80059838 GTCGTTTCGTTTCGTCCATATAAAAATATATTCATCAAGGTTCAGTTCCATAATTTACTCACTAT
521 GTCGTTTCGTTTCGTCCATATAAAAATAGATTCATCAAGGATCAGTTCCATAATTTACTCACTAT
*
80059903 TTAATTCTACTTCTACTATTTTTAGTGATTTTTCAATCTCATCTCACTGCTGCTGTCCGCAACAG
586 TTAATTCTACTTATACTATTTTTAGTGATTTTTCAATCTCATCTCACTGCTGCTGTCCGCAACAG
80059968 TTACTGCAGTAGACTATGCCAATTTCATGAATTTTTCCTTGGCCTTAATCATCCATCATACATGA
651 TTACTGCAGTAGACTATGCCAATTTCATGAATTTTTCCTTGGCCTTAATCATCCATCATACATGA
*
80060033 CACAAATTATGGCCACCTTATCAAAATTTGAGTTTCTAA
716 CACAAATTATGGCCACCTTAACAAAATTTGAGTTTCTAA
* * *
80060072 GTGTAACACCCCTAACTCGTGACCGA-CGCCGGTGTCGGACACGAGGGGTTAACGAGACAAATCC
1 GTGTAACACCCCAAACCCGAGACC-ATCGCCGGTGTCGGACACGAGGGGTTAACGAGACAAATCC
*
80060136 TCTTAAAGTACCGACCAATTTGGCATTTCTGGACAGGCTGGAAAACTGCGTCACCGTCGCCTTAA
65 TCTTAAAGTACCGACCAATTTGGCATTTCTGGACAGGCTGGAAAACTGCATCACCGTCGCCTTAA
80060201 AAATCATATCTCGAGTTCCAAAACTCGGAAACTGGTTTCGTAAATTTTCCCTGAATTTAGACTCA
130 AAATCATATCTCGAGTTCCAAAACTCGGAAACTGGTTTCGTAAATTTTCCCTGAATTTAGACTCA
*
80060266 TATATCCATCCATGGATTTATTTTTAGAATTTTTGGTTGGGCCAATTGGTACAGTTTATTAGTTA
195 TATACCCATCCATGGATTTATTTTTAGAATTTTTGGTTGGGCCAATTGGTACAGTTTATTAGTTA
* *
80060331 AAGTCACCCATGTTACAGGGATCGACTGCTCTGACCTCCGCGCGTTACAACTTGAATATCTTTCT
260 AAGTCACCCATGTTACAGGGATCGACTGCTCTGACCTCCGCACGTTACAACTTGAATATCTCTCT
* *
80060396 GTACAGGGCTTTAATACTGGTGCCGTTTGTTTCTAATGAAACTAGACTCAAAATGGAATCTGTAC
325 GTACAGGGATTTAATACTGGTGCCGTTTGTTTCTAATGAAACTAGACTCAAAATGGAATCTGAAC
*
80060461 ATATAAGGCATGACTCCTAATTCTTTCTGGATAATTTATGGTAAATTTTCAAAGTCACGACAGGG
390 ATATAAGGCATGACTCCTAATTATTTCTGGATAATTTATGGTAAATTTTCAAAGTCACGACAGGG
*
80060526 GACCCAGAAATCGTTCTGGCCCTGTCTCACGAGAACTTTAATATCTCCCAGTATACTGCTCATAT
455 GACCCAGAAACCGTTCTGGCCCTGTCTCACGAGAACTTTAATATCTCCCAGTATACTGCTCATAT
80060591 GGTCGTTTCGTTTCGTCCATATAAAAATAGATTCATCAAGGATCAGTTCCATAATTTACTCACTA
520 GGTCGTTTCGTTTCGTCCATATAAAAATAGATTCATCAAGGATCAGTTCCATAATTTACTCACTA
80060656 TTTAATTCTACTTATACTATTTTTAGTGATTTTTCAATCTCATCTCACTGCTGCTGTCCGCAACA
585 TTTAATTCTACTTATACTATTTTTAGTGATTTTTCAATCTCATCTCACTGCTGCTGTCCGCAACA
80060721 GTTACTGCAGTAGACTATGCCAATTTCATGAATTTTTCCTTGGCCTTAATCATCCATCATACATG
650 GTTACTGCAGTAGACTATGCCAATTTCATGAATTTTTCCTTGGCCTTAATCATCCATCATACATG
80060786 ACACAAATTATGGCCACCTTAACAAAATTTGAGTTTCTAA
715 ACACAAATTATGGCCACCTTAACAAAATTTGAGTTTCTAA
80060826 G
1 G
80060827 ACTCGTGGCT
Statistics
Matches: 733, Mismatches: 21, Indels: 2
0.97 0.03 0.00
Matches are distributed among these distances:
754 732 1.00
755 1 0.00
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.33
Consensus pattern (754 bp):
GTGTAACACCCCAAACCCGAGACCATCGCCGGTGTCGGACACGAGGGGTTAACGAGACAAATCCT
CTTAAAGTACCGACCAATTTGGCATTTCTGGACAGGCTGGAAAACTGCATCACCGTCGCCTTAAA
AATCATATCTCGAGTTCCAAAACTCGGAAACTGGTTTCGTAAATTTTCCCTGAATTTAGACTCAT
ATACCCATCCATGGATTTATTTTTAGAATTTTTGGTTGGGCCAATTGGTACAGTTTATTAGTTAA
AGTCACCCATGTTACAGGGATCGACTGCTCTGACCTCCGCACGTTACAACTTGAATATCTCTCTG
TACAGGGATTTAATACTGGTGCCGTTTGTTTCTAATGAAACTAGACTCAAAATGGAATCTGAACA
TATAAGGCATGACTCCTAATTATTTCTGGATAATTTATGGTAAATTTTCAAAGTCACGACAGGGG
ACCCAGAAACCGTTCTGGCCCTGTCTCACGAGAACTTTAATATCTCCCAGTATACTGCTCATATG
GTCGTTTCGTTTCGTCCATATAAAAATAGATTCATCAAGGATCAGTTCCATAATTTACTCACTAT
TTAATTCTACTTATACTATTTTTAGTGATTTTTCAATCTCATCTCACTGCTGCTGTCCGCAACAG
TTACTGCAGTAGACTATGCCAATTTCATGAATTTTTCCTTGGCCTTAATCATCCATCATACATGA
CACAAATTATGGCCACCTTAACAAAATTTGAGTTTCTAA
Found at i:80061494 original size:27 final size:28
Alignment explanation
Indices: 80061464--80061533 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
80061454 ATAATAAGTC
*
80061464 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
80061491 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
80061519 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
80061534 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:80069404 original size:27 final size:28
Alignment explanation
Indices: 80069374--80069443 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
80069364 ATAATAAGTC
*
80069374 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
80069401 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
80069429 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
80069444 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:80071860 original size:29 final size:29
Alignment explanation
Indices: 80071809--80071880 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
80071799 CCCTCGAGCT
* * * *
80071809 CGCACAC-CAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
80071837 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
80071866 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
80071881 GATCTCGTCA
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
28 6 0.16
29 31 0.84
ACGTcount: A:0.22, C:0.33, G:0.17, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:80072422 original size:52 final size:51
Alignment explanation
Indices: 80072357--80072463 Score: 128
Period size: 52 Copynumber: 2.1 Consensus size: 51
80072347 AAAAAAAAAA
*
80072357 AAAGAAAAAAAAA-TGTTCATCCTTCTCCA-TAGCTTGGCCGAATGTACTAAGG
1 AAAGAAAAAAAAATTGTTCATCCTT-TCCACT-GCTTGGCCGAA-ATACTAAGG
* * *
80072409 AAAGAAAAGAAAATTTGTTCATCCTTTTCACTTCTTGGCCGAAATACTAAGG
1 AAAGAAAA-AAAAATTGTTCATCCTTTCCACTGCTTGGCCGAAATACTAAGG
80072461 AAA
1 AAA
80072464 AGGGGAGGAT
Statistics
Matches: 48, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
52 19 0.40
53 17 0.35
54 12 0.25
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.27
Consensus pattern (51 bp):
AAAGAAAAAAAAATTGTTCATCCTTTCCACTGCTTGGCCGAAATACTAAGG
Found at i:80073727 original size:39 final size:39
Alignment explanation
Indices: 80073646--80073810 Score: 138
Period size: 39 Copynumber: 4.2 Consensus size: 39
80073636 AAATTGAATG
* * * ** *
80073646 ATATCCGGGCTAAGCCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCGAAGGCAATTGTGC-GAGTGACT
* * *
80073685 ATATCCGGGTTAAGACCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCGAAGGCAATTGTGCGAGTGACT
* * *
80073724 ATATCCGGGCTAAGCCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCGAAGGCAATT-GTGCGAGTGACT
* * *
80073763 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGA-CCGAAGGCAATTGTGCGA-GTGACT
80073803 ATATCCGG
1 ATATCCGG
80073811 TTATATTCCG
Statistics
Matches: 101, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
38 3 0.03
39 72 0.71
40 24 0.24
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCGAAGGCAATTGTGCGAGTGACT
Found at i:80073777 original size:78 final size:79
Alignment explanation
Indices: 80073646--80073794 Score: 196
Period size: 78 Copynumber: 1.9 Consensus size: 79
80073636 AAATTGAATG
*
80073646 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGA-CCGAAGGCAA
1 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
80073710 TTGTGCTAGTGGCT
66 TTGTGCTAGTGGCT
* * ** *
80073724 ATATCCGGGCTAAGCCCGAAGGC-ATTCGTGC-GAGTTATTCTATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGCCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGC
*
80073787 ATTTGTGC
64 AATTGTGC
80073795 ACGTGATTAT
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
77 4 0.07
78 42 0.69
79 15 0.25
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCTAGTGGCT
Found at i:80082874 original size:28 final size:29
Alignment explanation
Indices: 80082834--80082895 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 29
80082824 AGCTCGCACC
* * *
80082834 TGCCGTATTTTTCCAGC-TGCACACTTAG
1 TGCCATATATTTCCAGCACGCACACTTAG
80082862 TGCCATATATTTCCAGCACGCACACTTAG
1 TGCCATATATTTCCAGCACGCACACTTAG
80082891 TGCCA
1 TGCCA
80082896 ATCTCGTCAC
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
28 15 0.50
29 15 0.50
ACGTcount: A:0.23, C:0.31, G:0.16, T:0.31
Consensus pattern (29 bp):
TGCCATATATTTCCAGCACGCACACTTAG
Found at i:80085653 original size:40 final size:40
Alignment explanation
Indices: 80085545--80085794 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
80085535 CGGGATTTAA
* * * * *
80085545 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
80085585 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
80085625 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
80085665 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
80085705 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
80085745 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
80085785 CCGGATATAT
1 CCGGATATAT
80085795 TTCCAATGTT
Statistics
Matches: 193, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 1 0.01
40 192 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:80092222 original size:28 final size:28
Alignment explanation
Indices: 80092190--80092289 Score: 103
Period size: 28 Copynumber: 3.5 Consensus size: 28
80092180 ATAGTGAATC
* * *
80092190 CGCACACTTAGTGCTATATATTTC-AGCT
1 CGCACACTTAGTGCTATAGA-ATCAAACT
80092218 CGCACACTTAGTGCTATAGAATCAAACT
1 CGCACACTTAGTGCTATAGAATCAAACT
* * * *
80092246 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATAGAA--TCAAACT
80092276 CGCACACTTAGTGC
1 CGCACACTTAGTGC
80092290 CAATCTTGTC
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
27 2 0.03
28 41 0.66
30 19 0.31
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAGAATCAAACT
Found at i:80096102 original size:40 final size:40
Alignment explanation
Indices: 80096036--80096202 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
80096026 AAATTGAATG
* * *
80096036 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
80096075 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
80096115 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
80096155 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
80096195 ATATCCGG
1 ATATCCGG
80096203 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:80105274 original size:29 final size:29
Alignment explanation
Indices: 80105242--80105319 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
80105232 ATACCCTCCG
** *
80105242 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
* *
80105271 AGCTTGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
*
80105300 AGCACGCACACTTAGTGCCG
1 AGCTCGCACACTTAGTGCCG
80105320 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.22, C:0.33, G:0.18, T:0.27
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCGTATATTTCC
Found at i:80108746 original size:40 final size:40
Alignment explanation
Indices: 80108687--80108894 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 40
80108677 CAATTGAATG
* * * *
80108687 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
80108727 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
80108767 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
80108807 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
80108847 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
80108887 ATATCCGG
1 ATATCCGG
80108895 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:80108825 original size:80 final size:80
Alignment explanation
Indices: 80108688--80108894 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
80108678 AATTGAATGA
* * ** * * *
80108688 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
*
80108753 TTGTGCTAGT-G-AC
66 TTGTGCAAGTCGTAC
* * *
80108766 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
* *
80108831 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* *
80108848 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
80108895 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
80 105 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:80116898 original size:40 final size:40
Alignment explanation
Indices: 80116839--80117046 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 40
80116829 CAATTGAATG
* * * *
80116839 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
80116879 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
80116919 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
80116959 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
80116999 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
80117039 ATATCCGG
1 ATATCCGG
80117047 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:80116977 original size:80 final size:80
Alignment explanation
Indices: 80116840--80117046 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
80116830 AATTGAATGA
* * ** * * *
80116840 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
*
80116905 TTGTGCTAGT-G-AC
66 TTGTGCAAGTCGTAC
* * *
80116918 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
* *
80116983 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* *
80117000 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
80117047 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
80 105 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:80119883 original size:47 final size:47
Alignment explanation
Indices: 80119820--80120025 Score: 340
Period size: 47 Copynumber: 4.4 Consensus size: 47
80119810 CCCTTCGGGA
* * * *
80119820 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
80119867 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
80119914 CTTATCACATATACACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
80119961 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
80120008 CTTATCACATATACACAC
1 CTTATCACATATATACAC
80120026 CTTGTACATC
Statistics
Matches: 148, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 148 1.00
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:80119981 original size:94 final size:94
Alignment explanation
Indices: 80119820--80120025 Score: 385
Period size: 94 Copynumber: 2.2 Consensus size: 94
80119810 CCCTTCGGGA
* *
80119820 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCACATATACACACTTTCACATCCATCACATTGGCCATTCGGCCTTATCACATATATACAC
80119885 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
*
80119914 CTTATCACATATACACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCACATATACACACTTTCACATCCATCACATTGGCCATTCGGCCTTATCACATATATACAC
80119979 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
80120008 CTTATCACATATACACAC
1 CTTATCACATATACACAC
80120026 CTTGTACATC
Statistics
Matches: 109, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
94 109 1.00
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (94 bp):
CTTATCACATATACACACTTTCACATCCATCACATTGGCCATTCGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:80121324 original size:26 final size:26
Alignment explanation
Indices: 80121288--80121340 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
80121278 TTAGCTTCTT
80121288 ATCCAAATTTGCCATAAAGAAAATTA
1 ATCCAAATTTGCCATAAAGAAAATTA
80121314 ATCCAAATTTGCCATAAAGAAAATTA
1 ATCCAAATTTGCCATAAAGAAAATTA
80121340 A
1 A
80121341 CTCATATACC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.51, C:0.15, G:0.08, T:0.26
Consensus pattern (26 bp):
ATCCAAATTTGCCATAAAGAAAATTA
Found at i:80125413 original size:13 final size:13
Alignment explanation
Indices: 80125395--80125419 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
80125385 TATGTGATAT
80125395 GTGTGAAAATTTC
1 GTGTGAAAATTTC
80125408 GTGTGAAAATTT
1 GTGTGAAAATTT
80125420 TATGGTTTCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:80138410 original size:28 final size:28
Alignment explanation
Indices: 80138377--80138478 Score: 136
Period size: 28 Copynumber: 3.7 Consensus size: 28
80138367 ATTGCATGAC
*
80138377 TATGAATGTGATTGGGCCTGACGGGCCA
1 TATGAATGTGATTGGGCCTGATGGGCCA
*
80138405 TATGAAAGTGATT-GGCCTGATGGGCCA
1 TATGAATGTGATTGGGCCTGATGGGCCA
* *
80138432 TATGAATGTGATTGGG-CTCGGTGGACCA
1 TATGAATGTGATTGGGCCT-GATGGGCCA
*
80138460 TATGAATGAGATTGGGCCT
1 TATGAATGTGATTGGGCCT
80138479 AAAGGGGCTA
Statistics
Matches: 65, Mismatches: 6, Indels: 5
0.86 0.08 0.07
Matches are distributed among these distances:
27 27 0.42
28 36 0.55
29 2 0.03
ACGTcount: A:0.24, C:0.15, G:0.34, T:0.27
Consensus pattern (28 bp):
TATGAATGTGATTGGGCCTGATGGGCCA
Found at i:80161121 original size:26 final size:26
Alignment explanation
Indices: 80161092--80161148 Score: 89
Period size: 26 Copynumber: 2.2 Consensus size: 26
80161082 GCACTCTCTC
80161092 GAGCCATATAA-CAGGAAACTCACAAA
1 GAGCCAT-TAATCAGGAAACTCACAAA
*
80161118 GAGCCATTAATCAGGAAGCTCACAAA
1 GAGCCATTAATCAGGAAACTCACAAA
80161144 GAGCC
1 GAGCC
80161149 TATCAAGAAG
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
25 3 0.10
26 26 0.90
ACGTcount: A:0.44, C:0.25, G:0.19, T:0.12
Consensus pattern (26 bp):
GAGCCATTAATCAGGAAACTCACAAA
Found at i:80161158 original size:23 final size:25
Alignment explanation
Indices: 80161092--80161216 Score: 73
Period size: 24 Copynumber: 5.1 Consensus size: 25
80161082 GCACTCTCTC
* * *
80161092 GAGCCATATAACAGGAAACTCACAAA
1 GAGCCATA-ATCAAGAAGCTCACAAA
*
80161118 GAGCCATTAATCAGGAAGCTCACAAA
1 GAGCCA-TAATCAAGAAGCTCACAAA
**
80161144 GAGCC-T-ATCAAGAAGCTTGTC---
1 GAGCCATAATCAAGAAGC-TCACAAA
* * * *
80161165 CAGCTATATAACAAGAAGCTCATAAA
1 GAGCCATA-ATCAAGAAGCTCACAAA
*
80161191 -AGCCATAATCAAGAAGTTCACAAA
1 GAGCCATAATCAAGAAGCTCACAAA
80161215 GA
1 GA
80161217 ACTTTTAATC
Statistics
Matches: 75, Mismatches: 15, Indels: 19
0.69 0.14 0.17
Matches are distributed among these distances:
21 3 0.04
22 1 0.01
23 10 0.13
24 26 0.35
25 7 0.09
26 26 0.35
27 2 0.03
ACGTcount: A:0.45, C:0.22, G:0.17, T:0.17
Consensus pattern (25 bp):
GAGCCATAATCAAGAAGCTCACAAA
Found at i:80163077 original size:21 final size:21
Alignment explanation
Indices: 80163051--80163092 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
80163041 TATATGGAAT
80163051 GTTAATTTAATGGTATCAAAG
1 GTTAATTTAATGGTATCAAAG
80163072 GTTAATTTAATGGTATCAAAG
1 GTTAATTTAATGGTATCAAAG
80163093 CTACAAATGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.38, C:0.05, G:0.19, T:0.38
Consensus pattern (21 bp):
GTTAATTTAATGGTATCAAAG
Found at i:80167004 original size:46 final size:44
Alignment explanation
Indices: 80166861--80167004 Score: 107
Period size: 46 Copynumber: 3.1 Consensus size: 44
80166851 CCCGCCCATA
* *
80166861 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---A-ATC-CT
* * * *
80166910 --CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGC--ATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCAAATCC-T
80166953 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AA-ATCCT
80167000 AGTGA
1 AGTGA
80167005 CATGTCACTT
Statistics
Matches: 75, Mismatches: 10, Indels: 23
0.69 0.09 0.21
Matches are distributed among these distances:
42 1 0.01
43 4 0.05
44 4 0.05
46 32 0.43
47 27 0.36
48 4 0.05
49 3 0.04
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATCCT
Found at i:80170638 original size:20 final size:21
Alignment explanation
Indices: 80170613--80170655 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
80170603 AAATAGTGAG
* *
80170613 TATTTTTT-AAGTATAAATTC
1 TATTTTTTGAAATAAAAATTC
80170633 TATTTTTTGAAATAAAAATTC
1 TATTTTTTGAAATAAAAATTC
80170654 TA
1 TA
80170656 CCAGTTTCTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 8 0.40
21 12 0.60
ACGTcount: A:0.40, C:0.05, G:0.05, T:0.51
Consensus pattern (21 bp):
TATTTTTTGAAATAAAAATTC
Found at i:80172053 original size:13 final size:13
Alignment explanation
Indices: 80172035--80172059 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
80172025 CACTATCAAC
80172035 AGGATCAAGGATT
1 AGGATCAAGGATT
80172048 AGGATCAAGGAT
1 AGGATCAAGGAT
80172060 ACTTCCAGCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.32, T:0.20
Consensus pattern (13 bp):
AGGATCAAGGATT
Found at i:80175013 original size:21 final size:22
Alignment explanation
Indices: 80174979--80175020 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
80174969 TAAAAATTAT
**
80174979 AAAATATATTAAAT-TTTAATA
1 AAAATATAAGAAATATTTAATA
80175000 AAAATATAAGAAATATTTAAT
1 AAAATATAAGAAATATTTAAT
80175021 TTTTATTAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (22 bp):
AAAATATAAGAAATATTTAATA
Found at i:80175040 original size:28 final size:29
Alignment explanation
Indices: 80174967--80175047 Score: 94
Period size: 29 Copynumber: 2.8 Consensus size: 29
80174957 AATGATAAAA
80174967 AATAAAAATTATA-AAATATATTAAATTTT
1 AATAAAAATTA-AGAAATATATTAAATTTT
*
80174996 AATAAAAATATAAGAAATAT-TTAATTTTT
1 AATAAAAAT-TAAGAAATATATTAAATTTT
* * *
80175025 ATTAAAAATTAGGAAAAATATTA
1 AATAAAAATTAAGAAATATATTA
80175048 TAAATTATAT
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
28 8 0.18
29 29 0.64
30 8 0.18
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (29 bp):
AATAAAAATTAAGAAATATATTAAATTTT
Found at i:80175044 original size:30 final size:29
Alignment explanation
Indices: 80174967--80175072 Score: 92
Period size: 30 Copynumber: 3.6 Consensus size: 29
80174957 AATGATAAAA
*
80174967 AATAAAAAT-TATAAAATATATTAAATTTT
1 AATAAAAATATAAAAAATAT-TTAAATTTT
* *
80174996 AATAAAAATATAAGAAATATTTAATTTTT
1 AATAAAAATATAAAAAATATTTAAATTTT
* *
80175025 ATTAAAAAT-TAGGAAAAATATTATAAATTAT
1 AATAAAAATATA--AAAAATATT-TAAATTTT
*
80175056 -ATAGAAATATAGAAAAA
1 AATAAAAATATA-AAAAA
80175073 AATATATAGA
Statistics
Matches: 63, Mismatches: 9, Indels: 9
0.78 0.11 0.11
Matches are distributed among these distances:
28 2 0.03
29 25 0.40
30 28 0.44
31 8 0.13
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (29 bp):
AATAAAAATATAAAAAATATTTAAATTTT
Found at i:80175065 original size:20 final size:20
Alignment explanation
Indices: 80175040--80175094 Score: 56
Period size: 22 Copynumber: 2.6 Consensus size: 20
80175030 AAATTAGGAA
*
80175040 AAATATTATAAATTATATAG
1 AAATATTATAAAATATATAG
* *
80175060 AAATATAGAAAAAAATATATAG
1 AAATAT--TATAAAATATATAG
*
80175082 AAATTTTATAAAA
1 AAATATTATAAAA
80175095 CTGTAAGAAA
Statistics
Matches: 27, Mismatches: 6, Indels: 4
0.73 0.16 0.11
Matches are distributed among these distances:
20 11 0.41
22 16 0.59
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (20 bp):
AAATATTATAAAATATATAG
Found at i:80175114 original size:20 final size:19
Alignment explanation
Indices: 80175091--80175132 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
80175081 GAAATTTTAT
* *
80175091 AAAACTGTAAGAAAATGATA
1 AAAAATGTAAAAAAAT-ATA
80175111 AAAAATGTAAAAAAATATA
1 AAAAATGTAAAAAAATATA
80175130 AAA
1 AAA
80175133 TTCATAAAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 6 0.30
20 14 0.70
ACGTcount: A:0.69, C:0.02, G:0.10, T:0.19
Consensus pattern (19 bp):
AAAAATGTAAAAAAATATA
Found at i:80175451 original size:26 final size:26
Alignment explanation
Indices: 80175422--80175471 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
80175412 TTTTTATATT
80175422 TTTATTAAAGTTTAATTTTTATAACA
1 TTTATTAAAGTTTAATTTTTATAACA
* ** *
80175448 TTTATTGATTTTTATTTTTTATAA
1 TTTATTAAAGTTTAATTTTTATAA
80175472 TTTTTTTGTC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.32, C:0.02, G:0.04, T:0.62
Consensus pattern (26 bp):
TTTATTAAAGTTTAATTTTTATAACA
Found at i:80176067 original size:26 final size:25
Alignment explanation
Indices: 80176016--80176065 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
80176006 TACAACAAAA
80176016 AAATCTTTTTAAAAATTTATTTTTT
1 AAATCTTTTTAAAAATTTATTTTTT
80176041 AAATCTTTTTAAAAGA-TTATTTTTT
1 AAATCTTTTTAAAA-ATTTATTTTTT
80176066 TACTTTCAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 23 0.96
26 1 0.04
ACGTcount: A:0.36, C:0.04, G:0.02, T:0.58
Consensus pattern (25 bp):
AAATCTTTTTAAAAATTTATTTTTT
Found at i:80176126 original size:26 final size:26
Alignment explanation
Indices: 80176098--80176148 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
80176088 AATTTGTGAG
* *
80176098 AAATTTAAAATAATTTAAAATATATGA
1 AAATTTAAAA-AATTAAAAAAATATGA
*
80176125 AAATTTTAAAAATTAAAAAAATAT
1 AAATTTAAAAAATTAAAAAAATAT
80176149 TATTTTCTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 12 0.57
27 9 0.43
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (26 bp):
AAATTTAAAAAATTAAAAAAATATGA
Found at i:80180473 original size:46 final size:46
Alignment explanation
Indices: 80180421--80180592 Score: 179
Period size: 46 Copynumber: 3.7 Consensus size: 46
80180411 TGGGCATCCA
80180421 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCG
* * * * * * * *
80180467 AACTCGTTGAGTTGAGTCCGAGTTC-GTGAAATGTA-ACTAGGCATCTG
1 AACTCGTTGAGTTGAGTCCGAGTTCACT--TATGGATGCGA-ACGTCCG
80180514 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-G
* * * *
80180560 AGCTCGTTGAATTGAGTCCAAGTTCGCTTATGG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
80180593 TCGGGTTACA
Statistics
Matches: 100, Mismatches: 20, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
45 2 0.02
46 62 0.62
47 35 0.35
48 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCG
Found at i:80185175 original size:16 final size:18
Alignment explanation
Indices: 80185156--80185188 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
80185146 CATACGAATT
80185156 CCAAAAC-ATA-ATAGTA
1 CCAAAACGATAGATAGTA
80185172 CCAAAACGATAGATAGT
1 CCAAAACGATAGATAGT
80185189 GTGACGAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 3 0.20
18 5 0.33
ACGTcount: A:0.52, C:0.18, G:0.12, T:0.18
Consensus pattern (18 bp):
CCAAAACGATAGATAGTA
Found at i:80185824 original size:43 final size:43
Alignment explanation
Indices: 80185753--80186003 Score: 398
Period size: 43 Copynumber: 5.8 Consensus size: 43
80185743 CTAAACTCAT
* * *
80185753 TCACCGGCATTACT--CCTACTAGGCTCGAAGCCCAATATTAAA
1 TCACCGGCATTA-TAGCCTGCTAGGCTCGAAGCCCGATATTAAC
* *
80185795 TCACTGGCATTATAGCCTGCTAGGTTCGAAGCCCGATATTAAC
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATATTAAC
* *
80185838 TTATCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATATTAAC
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATATTAAC
*
80185881 TCACCGACATTATAGCCTGCTAGGCTCGAAGCCCGATATTAAC
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATATTAAC
80185924 TCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATATTAAC
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATATTAAC
80185967 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGA
1 TCACCGGCATTATAGCCTGCTAGGCTCGAA-GCCCGA
80186004 ATAGTACCGT
Statistics
Matches: 193, Mismatches: 13, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
41 1 0.01
42 11 0.06
43 175 0.91
44 6 0.03
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.24
Consensus pattern (43 bp):
TCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATATTAAC
Found at i:80192976 original size:43 final size:43
Alignment explanation
Indices: 80192923--80193072 Score: 212
Period size: 43 Copynumber: 3.4 Consensus size: 43
80192913 ATTACTCCTA
*
80192923 CTAGGCTCGAAGCCCAATATTAAATCACTGGCATTATAGCCTG
1 CTAGGCTCGAAGCCCAATATTAACTCACTGGCATTATAGCCTG
* * *
80192966 CTAGGTTCGAAGCCCGATATTAACTTA-TCGGCATTATAGCCTG
1 CTAGGCTCGAAGCCCAATATTAACTCACT-GGCATTATAGCCTG
* *
80193009 CTAGGCTCGAAGCCCGATATTAACTCACCGGCATTATAGCCTG
1 CTAGGCTCGAAGCCCAATATTAACTCACTGGCATTATAGCCTG
80193052 CTAGGCTCGAAGGCCCGAATA
1 CTAGGCTCGAA-GCCC-AATA
80193073 GTTCCGTACG
Statistics
Matches: 95, Mismatches: 8, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
42 1 0.01
43 87 0.92
44 4 0.04
45 3 0.03
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (43 bp):
CTAGGCTCGAAGCCCAATATTAACTCACTGGCATTATAGCCTG
Found at i:80195137 original size:46 final size:46
Alignment explanation
Indices: 80195070--80195288 Score: 264
Period size: 46 Copynumber: 4.7 Consensus size: 46
80195060 TTGGGCATCT
*
80195070 GAACTCGTTGAGTTGAGTCCGAGTTTACTTATGGATGCGAACGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC
*
80195116 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC
* * * * * * *
80195162 AAACTCATTGAGTTGAGTCTGAGTT--CTTGAAATGTA-ACTAAGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTT---ATGGATGCGAA-CGTCC
*
80195209 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC
* * *
80195255 GAGCTCGTTGAGTTGAGTCTGAGTTCGCTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
80195289 GCGGGTTACA
Statistics
Matches: 145, Mismatches: 21, Indels: 14
0.81 0.12 0.08
Matches are distributed among these distances:
44 3 0.02
46 106 0.73
47 33 0.23
49 3 0.02
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC
Found at i:80198464 original size:26 final size:26
Alignment explanation
Indices: 80198413--80198474 Score: 83
Period size: 26 Copynumber: 2.4 Consensus size: 26
80198403 TTTTGAGAAA
*
80198413 TTAAAAAAT-TAAAAATTAAAATATT
1 TTAAAAAATATGAAAATTAAAATATT
*
80198438 TTAAAATATATGAAAATATAAAA-ATT
1 TTAAAAAATATGAAAAT-TAAAATATT
80198464 TTAAAAAATAT
1 TTAAAAAATAT
80198475 TATTTTCTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
25 8 0.25
26 19 0.59
27 5 0.16
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (26 bp):
TTAAAAAATATGAAAATTAAAATATT
Found at i:80200614 original size:19 final size:19
Alignment explanation
Indices: 80200590--80200626 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
80200580 AGAGATTCAA
80200590 TATTAGAATCAAAATTACT
1 TATTAGAATCAAAATTACT
*
80200609 TATTAGAATCAAATTTAC
1 TATTAGAATCAAAATTAC
80200627 AAATACAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.46, C:0.11, G:0.05, T:0.38
Consensus pattern (19 bp):
TATTAGAATCAAAATTACT
Found at i:80202339 original size:122 final size:122
Alignment explanation
Indices: 80202177--80202410 Score: 450
Period size: 122 Copynumber: 1.9 Consensus size: 122
80202167 TTGCTCTCTT
*
80202177 CATTTCTACCCATATTTCATGCTAGGGTTCATGTTAAAAAATTTACCCATGCATGAGTTATTGGT
1 CATTTCTACCCATATTTCATGCTAGGGTTCATGTTAAAAAAATTACCCATGCATGAGTTATTGGT
80202242 ATTTTGATGGATTATGGAAGAATATGAAAGATAAATGTGTGTTAAACATCTTTTCTC
66 ATTTTGATGGATTATGGAAGAATATGAAAGATAAATGTGTGTTAAACATCTTTTCTC
*
80202299 CATTTCTACCCATATTTCATGCTAGGGTTCATGTTCAAAAAATTACCCATGCATGAGTTATTGGT
1 CATTTCTACCCATATTTCATGCTAGGGTTCATGTTAAAAAAATTACCCATGCATGAGTTATTGGT
80202364 ATTTTGATGGATTATGGAAGAATATGAAAGATAAATGTGTGTTAAAC
66 ATTTTGATGGATTATGGAAGAATATGAAAGATAAATGTGTGTTAAAC
80202411 TTGAAATATA
Statistics
Matches: 110, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
122 110 1.00
ACGTcount: A:0.32, C:0.13, G:0.18, T:0.37
Consensus pattern (122 bp):
CATTTCTACCCATATTTCATGCTAGGGTTCATGTTAAAAAAATTACCCATGCATGAGTTATTGGT
ATTTTGATGGATTATGGAAGAATATGAAAGATAAATGTGTGTTAAACATCTTTTCTC
Found at i:80208320 original size:46 final size:46
Alignment explanation
Indices: 80208268--80208395 Score: 211
Period size: 46 Copynumber: 2.8 Consensus size: 46
80208258 GGTTGAGCAT
* *
80208268 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
80208314 CTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* *
80208360 CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
80208396 GCGGGTTACA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 76 1.00
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.30
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:80211951 original size:40 final size:40
Alignment explanation
Indices: 80211906--80212071 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
80211896 CGGAATATAA
80211906 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
80211946 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
80211986 CCGGA-ATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
80212025 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
80212064 CCGGATAT
1 CCGGATAT
80212072 CATTCAATTT
Statistics
Matches: 105, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 45 0.43
40 60 0.57
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:80212028 original size:39 final size:39
Alignment explanation
Indices: 80211922--80212029 Score: 130
Period size: 39 Copynumber: 2.7 Consensus size: 39
80211912 ATAATCACGT
* *
80211922 GCACAAATGCCTTCGGGTCTTAGCCCGG-ATAGAATAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAATAG-ACAACTA
*
80211962 GCACGAATGCCTTCGGGTCTTAGCCCGGAATAG-CCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAATAGACAACTA
*
80212001 GCACAATTGCCTTCGGGTCTTAACCCGGA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGA
80212030 TATAATTTCC
Statistics
Matches: 61, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
38 2 0.03
39 28 0.46
40 27 0.44
41 4 0.07
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.22
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGAATAGACAACTA
Found at i:80219936 original size:40 final size:40
Alignment explanation
Indices: 80219891--80220055 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
80219881 CGGAATATAA
80219891 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
80219931 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
80219971 CCGG--ATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
80220009 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
80220048 CCGGATAT
1 CCGGATAT
80220056 CATTCAATTT
Statistics
Matches: 103, Mismatches: 19, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
38 30 0.29
39 14 0.14
40 59 0.57
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:80220039 original size:78 final size:77
Alignment explanation
Indices: 80219907--80220054 Score: 192
Period size: 78 Copynumber: 1.9 Consensus size: 77
80219897 ATAATCACGT
*
80219907 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
80219972 CGGATAGCCACTA
65 CGGATAGCCACTA
* * ** * *
80219985 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
80220048 CCGGATA
64 CCGGATA
80220055 TCATTCAATT
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
77 16 0.26
78 45 0.74
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (77 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATAGCCACTA
Found at i:80227774 original size:40 final size:40
Alignment explanation
Indices: 80227729--80227895 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
80227719 CGGAATATAA
80227729 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
80227769 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
80227809 CCGGA-ATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
80227848 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
80227888 CCGGATAT
1 CCGGATAT
80227896 CATTCAATTT
Statistics
Matches: 105, Mismatches: 20, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
39 32 0.30
40 73 0.70
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:80227851 original size:39 final size:39
Alignment explanation
Indices: 80227745--80227852 Score: 130
Period size: 39 Copynumber: 2.7 Consensus size: 39
80227735 ATAATCACGT
* *
80227745 GCACAAATGCCTTCGGGTCTTAGCCCGG-ATAGAATAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAATAG-ACAACTA
*
80227785 GCACGAATGCCTTCGGGTCTTAGCCCGGAATAG-CCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAATAGACAACTA
*
80227824 GCACAATTGCCTTCGGGTCTTAACCCGGA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGA
80227853 TATAATTTCC
Statistics
Matches: 61, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
38 2 0.03
39 28 0.46
40 27 0.44
41 4 0.07
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.22
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGAATAGACAACTA
Found at i:80238064 original size:129 final size:129
Alignment explanation
Indices: 80237830--80238083 Score: 366
Period size: 129 Copynumber: 2.0 Consensus size: 129
80237820 CCCTGACTGG
* * * *
80237830 TCAACAATAAGGTTAATCTTCGCCAGATTTTCGTTTACCTACCCTAGATTGGGTAAGGAAATTAG
1 TCAACAATAAGATTAATCATCACCAGATTTTCGTTTACCTACCCTAGATTGGGTAAGGAAATAAG
80237895 GAGACCAAGAATATATTTACGGGAAGTGGACACTTGGAATGGTTTTTGGCTATCTGCTTAATGC
66 GAGACCAAGAATATATTTACGGGAAGTGGACACTTGGAATGGTTTTTGGCTATCTGCTTAATGC
* * * * *
80237959 TCAACAGTAAGATTAATCATCACTAGATTTTCTTTTACCTACCTTGGATTGGGTAAGGAAATCAA
1 TCAACAATAAGATTAATCATCACCAGATTTTCGTTTACCTACCCTAGATTGGGTAAGGAAAT-AA
* * * * *
80238024 GG-GATCGAGAATGTATTTATGGGAAGTGGACACTTTGAATGGTTTTTGGCTATCTGCTTA
65 GGAGACCAAGAATATATTTACGGGAAGTGGACACTTGGAATGGTTTTTGGCTATCTGCTTA
80238084 TTGGTTAGGT
Statistics
Matches: 110, Mismatches: 14, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
129 107 0.97
130 3 0.03
ACGTcount: A:0.29, C:0.15, G:0.22, T:0.33
Consensus pattern (129 bp):
TCAACAATAAGATTAATCATCACCAGATTTTCGTTTACCTACCCTAGATTGGGTAAGGAAATAAG
GAGACCAAGAATATATTTACGGGAAGTGGACACTTGGAATGGTTTTTGGCTATCTGCTTAATGC
Found at i:80240710 original size:46 final size:46
Alignment explanation
Indices: 80240660--80240835 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
80240650 TGGTTGAGCA
80240660 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
80240706 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
80240751 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*
80240799 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
80240836 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 10, Indels: 20
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 5 0.05
46 62 0.56
47 29 0.26
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Done.