Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 254 of 318
Found at i:80240816 original size:93 final size:93
Alignment explanation
Indices: 80240657--80240827 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
80240647 GGATGGTTGA
*
80240657 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
80240722 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
80240750 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
80240814 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
80240828 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:80242914 original size:29 final size:29
Alignment explanation
Indices: 80242845--80242920 Score: 82
Period size: 29 Copynumber: 2.7 Consensus size: 29
80242835 ATCCAGGAGA
* * *
80242845 AGGAAAGCCTTTGAGGC-AATCTTTGTAT
1 AGGAAAGCCTTTGTGGCAAAGCTTTGGAT
* * **
80242873 AAGAATGTGTTTGTGGCAAAGCTTTGGAT
1 AGGAAAGCCTTTGTGGCAAAGCTTTGGAT
80242902 AGGAAAGCCTTTGTGGCAA
1 AGGAAAGCCTTTGTGGCAA
80242921 GTACTAAACG
Statistics
Matches: 36, Mismatches: 11, Indels: 1
0.75 0.23 0.02
Matches are distributed among these distances:
28 12 0.33
29 24 0.67
ACGTcount: A:0.29, C:0.12, G:0.29, T:0.30
Consensus pattern (29 bp):
AGGAAAGCCTTTGTGGCAAAGCTTTGGAT
Found at i:80242944 original size:32 final size:32
Alignment explanation
Indices: 80242902--80243013 Score: 101
Period size: 32 Copynumber: 3.6 Consensus size: 32
80242892 AGCTTTGGAT
80242902 AGGAAAGCCTTTGTGGCAAGTACTAAACGTAA
1 AGGAAAGCCTTTGTGGCAAGTACTAAACGTAA
* *
80242934 AGGAATGCCTTTGTGGCAA--A--AATC-TAGA
1 AGGAAAGCCTTTGTGGCAAGTACTAAACGTA-A
* * * *
80242962 TAGGAAAGCCTCTGTAGCAAGTACTGAATGTAA
1 -AGGAAAGCCTTTGTGGCAAGTACTAAACGTAA
80242995 A-GAAATGCCTTTGTGGCAA
1 AGGAAA-GCCTTTGTGGCAA
80243014 AACTCTAGAC
Statistics
Matches: 62, Mismatches: 10, Indels: 16
0.70 0.11 0.18
Matches are distributed among these distances:
27 2 0.03
28 4 0.06
29 16 0.26
30 1 0.02
31 5 0.08
32 30 0.48
33 2 0.03
34 2 0.03
ACGTcount: A:0.36, C:0.15, G:0.25, T:0.24
Consensus pattern (32 bp):
AGGAAAGCCTTTGTGGCAAGTACTAAACGTAA
Found at i:80242964 original size:61 final size:61
Alignment explanation
Indices: 80242882--80243112 Score: 302
Period size: 61 Copynumber: 3.8 Consensus size: 61
80242872 TAAGAATGTG
* * * * *
80242882 TTTGTGGCAAAGCTTTGGATAGGAAAGCCTTTGTGGCAAGTACTAAACGTAAAGGAATGCC
1 TTTGTGGCAAAACTCTAGATAGGAAAGCCTTTGTGGCAAGTACTGAATGTAAAGGAATGCC
* * * *
80242943 TTTGTGGCAAAAATCTAGATAGGAAAGCCTCTGTAGCAAGTACTGAATGTAAAGAAATGCC
1 TTTGTGGCAAAACTCTAGATAGGAAAGCCTTTGTGGCAAGTACTGAATGTAAAGGAATGCC
* * * * *
80243004 TTTGTGGCAAAACTCTAGACAAGAAAACCTTTGTGGCAAGTATTGAATATAAAGGAATGCC
1 TTTGTGGCAAAACTCTAGATAGGAAAGCCTTTGTGGCAAGTACTGAATGTAAAGGAATGCC
* *
80243065 TTTGTGGGAAAACTCTGGATAGGAAAGCCTTTGTGGCGAA-TACTGAAT
1 TTTGTGGCAAAACTCTAGATAGGAAAGCCTTTGTGGC-AAGTACTGAAT
80243113 CATGGCGCAA
Statistics
Matches: 145, Mismatches: 24, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
61 143 0.99
62 2 0.01
ACGTcount: A:0.34, C:0.14, G:0.25, T:0.26
Consensus pattern (61 bp):
TTTGTGGCAAAACTCTAGATAGGAAAGCCTTTGTGGCAAGTACTGAATGTAAAGGAATGCC
Found at i:80244824 original size:22 final size:20
Alignment explanation
Indices: 80244799--80244846 Score: 55
Period size: 18 Copynumber: 2.4 Consensus size: 20
80244789 TACCGTTTCG
80244799 ATTAAATTCTTGTCAAAAAATA
1 ATTAAATT-TT-TCAAAAAATA
*
80244821 ATT-AA-TTTTCATAAAATA
1 ATTAAATTTTTCAAAAAATA
80244839 ATTAAATT
1 ATTAAATT
80244847 ATACTTAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
18 12 0.52
19 4 0.17
20 2 0.09
21 2 0.09
22 3 0.13
ACGTcount: A:0.50, C:0.06, G:0.02, T:0.42
Consensus pattern (20 bp):
ATTAAATTTTTCAAAAAATA
Found at i:80249826 original size:15 final size:15
Alignment explanation
Indices: 80249806--80249848 Score: 51
Period size: 15 Copynumber: 3.2 Consensus size: 15
80249796 TATTAGAAAT
80249806 AAATAGATATTATAA
1 AAATAGATATTATAA
80249821 AAATAGA-A--AT--
1 AAATAGATATTATAA
80249831 AAATAGATATTATAA
1 AAATAGATATTATAA
80249846 AAA
1 AAA
80249849 GAAACTAGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 10
0.70 0.00 0.30
Matches are distributed among these distances:
10 7 0.30
11 1 0.04
12 2 0.09
13 2 0.09
14 1 0.04
15 10 0.43
ACGTcount: A:0.65, C:0.00, G:0.07, T:0.28
Consensus pattern (15 bp):
AAATAGATATTATAA
Found at i:80249827 original size:25 final size:25
Alignment explanation
Indices: 80249799--80249848 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
80249789 AAATATTTAT
80249799 TAGAAATAAATAGATATTATAAAAA
1 TAGAAATAAATAGATATTATAAAAA
80249824 TAGAAATAAATAGATATTATAAAAA
1 TAGAAATAAATAGATATTATAAAAA
80249849 GAAACTAGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.64, C:0.00, G:0.08, T:0.28
Consensus pattern (25 bp):
TAGAAATAAATAGATATTATAAAAA
Found at i:80253346 original size:25 final size:22
Alignment explanation
Indices: 80253293--80253334 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
80253283 ATATTTTATT
80253293 TGATAAGTTTTTAATAATAAGA
1 TGATAAGTTTTTAATAATAAGA
80253315 TGATAAGTTTTTAATAATAA
1 TGATAAGTTTTTAATAATAA
80253335 TATAGAATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.45, C:0.00, G:0.12, T:0.43
Consensus pattern (22 bp):
TGATAAGTTTTTAATAATAAGA
Found at i:80253404 original size:17 final size:18
Alignment explanation
Indices: 80253378--80253411 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
80253368 TTTTTGTTTA
80253378 AATAAATTAATA-GCATT
1 AATAAATTAATATGCATT
*
80253395 AATAATTTAATATGCAT
1 AATAAATTAATATGCAT
80253412 ATATTTAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.50, C:0.06, G:0.06, T:0.38
Consensus pattern (18 bp):
AATAAATTAATATGCATT
Found at i:80256050 original size:40 final size:40
Alignment explanation
Indices: 80256005--80256170 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
80255995 CGGAATATAA
80256005 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
80256045 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
80256085 CCGGATATAGCCACTAGCAC-ATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
80256124 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
80256163 CCGGATAT
1 CCGGATAT
80256171 CATTCAATTT
Statistics
Matches: 106, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
39 45 0.42
40 61 0.58
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:80264060 original size:40 final size:40
Alignment explanation
Indices: 80264015--80264181 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
80264005 CGGAATATAA
80264015 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
80264055 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
80264095 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
80264135 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
80264174 CCGGATAT
1 CCGGATAT
80264182 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:80274001 original size:40 final size:40
Alignment explanation
Indices: 80273956--80274122 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
80273946 CGGAATATAA
80273956 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
80273996 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
80274036 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
80274076 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
80274115 CCGGATAT
1 CCGGATAT
80274123 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:80276001 original size:40 final size:40
Alignment explanation
Indices: 80275956--80276122 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
80275946 CGGAATATAA
80275956 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
80275996 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
80276036 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
80276076 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
80276115 CCGGATAT
1 CCGGATAT
80276123 CATTCAATTC
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:80284045 original size:39 final size:40
Alignment explanation
Indices: 80283940--80284067 Score: 138
Period size: 39 Copynumber: 3.2 Consensus size: 40
80283930 CGGAATATAA
*
80283940 CCGGATATAATC-ACGT-GCACAAATGCCTTCGGGTCTTAG-
1 CCGGATATAA-CAAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
80283979 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTAGCACGAATGCCTTCGGGTCTTAGC
* * * *
80284019 CCGGATATAGCCACTAGCAC-ATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTAGCACGAATGCCTTCGGGTCTTAGC
80284058 CCGGATATAA
1 CCGGATATAA
80284068 TTTCCAGCAT
Statistics
Matches: 75, Mismatches: 11, Indels: 6
0.82 0.12 0.07
Matches are distributed among these distances:
38 1 0.01
39 59 0.79
40 15 0.20
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCGGATATAACAACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:80292714 original size:43 final size:43
Alignment explanation
Indices: 80292653--80292875 Score: 320
Period size: 43 Copynumber: 5.2 Consensus size: 43
80292643 TGAAAAATGT
**
80292653 CGCTAAAGAACATGACCTTTAGCGGCGCTTTTGTCACAAACGC
1 CGCTAAAGAACATGACCTTTAGCGGCGCTTTTACCACAAACGC
* * *
80292696 CGCTAAAGAACAAGACCTTTAGCGGCGCTTTCACCACAAACAC
1 CGCTAAAGAACATGACCTTTAGCGGCGCTTTTACCACAAACGC
*
80292739 CGCTAAAGAACATGACCTTTAACGGCGCTTTTACCACAAACGC
1 CGCTAAAGAACATGACCTTTAGCGGCGCTTTTACCACAAACGC
* * *
80292782 CACTAAAGAACATGACCTTTAGTGACGCTTTTACCACAAACGC
1 CGCTAAAGAACATGACCTTTAGCGGCGCTTTTACCACAAACGC
* ** *
80292825 CGCTAAAGAACATGTCCTTTAGCGGCGCTTTTTGTCACAAATGC
1 CGCTAAAGAACATGACCTTTAGCGGCGC-TTTTACCACAAACGC
80292869 CGCTAAA
1 CGCTAAA
80292876 ACTACCCTTC
Statistics
Matches: 159, Mismatches: 20, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
43 140 0.88
44 19 0.12
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.22
Consensus pattern (43 bp):
CGCTAAAGAACATGACCTTTAGCGGCGCTTTTACCACAAACGC
Found at i:80294159 original size:34 final size:34
Alignment explanation
Indices: 80294099--80294200 Score: 107
Period size: 34 Copynumber: 3.0 Consensus size: 34
80294089 GAATACATTT
* * *
80294099 TGGGCCTAAGCCCATATT-AATGACAGTAACAGTC
1 TGGGCCTTAGCCCAT-TTCAGTAACAGTAACAGTC
** *
80294133 TGGGCCTTAGCCCATTTCAGTAACAGTAGTAGTT
1 TGGGCCTTAGCCCATTTCAGTAACAGTAACAGTC
* *
80294167 TGGGCTTTAGCCCATTTCAGTAATAGTAATCAGT
1 TGGGCCTTAGCCCATTTCAGTAACAGTAA-CAGT
80294201 GCAGTAACAG
Statistics
Matches: 56, Mismatches: 10, Indels: 3
0.81 0.14 0.04
Matches are distributed among these distances:
33 2 0.04
34 51 0.91
35 3 0.05
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30
Consensus pattern (34 bp):
TGGGCCTTAGCCCATTTCAGTAACAGTAACAGTC
Found at i:80294207 original size:18 final size:18
Alignment explanation
Indices: 80294184--80294224 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
80294174 TAGCCCATTT
*
80294184 CAGTAATAGTAATCAGTG
1 CAGTAACAGTAATCAGTG
80294202 CAGTAACAGTAATCAGTG
1 CAGTAACAGTAATCAGTG
80294220 CAGTA
1 CAGTA
80294225 TGCAAGCAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.39, C:0.15, G:0.22, T:0.24
Consensus pattern (18 bp):
CAGTAACAGTAATCAGTG
Found at i:80294509 original size:23 final size:23
Alignment explanation
Indices: 80294483--80294532 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
80294473 ACCCCATGCA
80294483 ATGCAACATA-ATATTATACATGG-
1 ATGCAACATACATA-TA-ACATGGC
80294506 ATGCAACATACATATAACATGGC
1 ATGCAACATACATATAACATGGC
80294529 ATGC
1 ATGC
80294533 TCAAATACAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
22 6 0.24
23 16 0.64
24 3 0.12
ACGTcount: A:0.42, C:0.18, G:0.14, T:0.26
Consensus pattern (23 bp):
ATGCAACATACATATAACATGGC
Found at i:80294613 original size:27 final size:26
Alignment explanation
Indices: 80294567--80294656 Score: 101
Period size: 27 Copynumber: 3.3 Consensus size: 26
80294557 GAACAAATCT
* *
80294567 GTCATTTTACCATACTGGGGTATTAC
1 GTCATTTTACCCTACTGGGGTATTTC
*
80294593 AGTCATTTTACCCTACAGGGGTATTTC
1 -GTCATTTTACCCTACTGGGGTATTTC
*
80294620 GATCATTCTACCCTA-TGGAGGTATTTC
1 G-TCATTTTACCCTACTGG-GGTATTTC
80294647 GGTCATTTTA
1 -GTCATTTTA
80294657 TTACATAAGG
Statistics
Matches: 54, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
26 3 0.06
27 50 0.93
28 1 0.02
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (26 bp):
GTCATTTTACCCTACTGGGGTATTTC
Found at i:80294678 original size:27 final size:27
Alignment explanation
Indices: 80294648--80295292 Score: 918
Period size: 27 Copynumber: 23.7 Consensus size: 27
80294638 AGGTATTTCG
* * *
80294648 GTCATTTTATTACATAAGGGAAAAATT
1 GTCATTTTATCACATAAGGGCAAAATC
* *
80294675 GTCATTTTATCACATAAGGGTAAAATT
1 GTCATTTTATCACATAAGGGCAAAATC
*
80294702 GTCATTTTATCAC--AAGGGCAAAATT
1 GTCATTTTATCACATAAGGGCAAAATC
*
80294727 GTCATTTTATCACATAAGAGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
80294754 GTCATTTTATCACATAAGGG-AAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
80294780 GTCATTTTATCACATAAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
* *
80294807 GTCATTTTATCACATGAGGGCAAAACC
1 GTCATTTTATCACATAAGGGCAAAATC
* * *
80294834 ATCATTTTATAACATGAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
* *
80294861 ATCATTTTATCACATAAAGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
* *
80294888 ATCATTTTATCACATGAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
* *
80294915 GTCATTTTATCACATGAGGGTAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
* *
80294942 GTCATTTTATCACATGAGGGCAAAATT
1 GTCATTTTATCACATAAGGGCAAAATC
*
80294969 GTCATTTTATCACATAAGGGTAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
* *
80294996 ATCATTTTATCACATGAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
80295023 GTCATTTTATCACATAAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
* *
80295050 ATCATTTTATCACATAAGGGCAAAATT
1 GTCATTTTATCACATAAGGGCAAAATC
*
80295077 GTCATTTTATCATATAAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
*
80295104 ATCATTTTATCACATATCACATGAGGGCAAAATC
1 GTCATTTTATCAC--AT---A--AGGGCAAAATC
* *
80295138 GTCATTTGATCACATGAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
*
80295165 GTCATTTTATCACATGAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
*
80295192 GTCATTTTATCACATGAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
*
80295219 GTCATTTTATCACATGAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
80295246 GTCATTTTATCACATAAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
80295273 GTCATTTTATCACATAAGGG
1 GTCATTTTATCACATAAGGG
80295293 TTCAGGTACC
Statistics
Matches: 568, Mismatches: 40, Indels: 20
0.90 0.06 0.03
Matches are distributed among these distances:
25 24 0.04
26 26 0.05
27 491 0.86
29 2 0.00
32 3 0.01
34 22 0.04
ACGTcount: A:0.37, C:0.17, G:0.16, T:0.31
Consensus pattern (27 bp):
GTCATTTTATCACATAAGGGCAAAATC
Found at i:80295122 original size:34 final size:34
Alignment explanation
Indices: 80295084--80295152 Score: 102
Period size: 34 Copynumber: 2.0 Consensus size: 34
80295074 ATTGTCATTT
* *
80295084 TATCATATAAGGGCAAAATCATCATTTTATCACA
1 TATCACATAAGGGCAAAATCATCATTTGATCACA
* *
80295118 TATCACATGAGGGCAAAATCGTCATTTGATCACA
1 TATCACATAAGGGCAAAATCATCATTTGATCACA
80295152 T
1 T
80295153 GAGGGCAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.38, C:0.19, G:0.13, T:0.30
Consensus pattern (34 bp):
TATCACATAAGGGCAAAATCATCATTTGATCACA
Found at i:80297716 original size:80 final size:80
Alignment explanation
Indices: 80297632--80297780 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
80297622 TATGGTAACC
* * * *
80297632 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
80297696 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
80297712 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
80297777 CCGG
66 CCGG
80297781 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:80297722 original size:40 final size:38
Alignment explanation
Indices: 80297673--80297780 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
80297663 ATCACGATTT
*
80297673 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
80297713 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
80297753 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
80297781 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:80305819 original size:80 final size:80
Alignment explanation
Indices: 80305735--80305883 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
80305725 TATGGTAACC
* * * *
80305735 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
80305799 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
80305815 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
80305880 CCGG
66 CCGG
80305884 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:80305825 original size:40 final size:38
Alignment explanation
Indices: 80305776--80305883 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
80305766 ATCACGATTT
*
80305776 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
80305816 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
80305856 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
80305884 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:80308701 original size:13 final size:14
Alignment explanation
Indices: 80308675--80308703 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
80308665 ACTAATGACA
80308675 AATTAAACCATTAT
1 AATTAAACCATTAT
80308689 AATTAAA-CATTAT
1 AATTAAACCATTAT
80308702 AA
1 AA
80308704 ATATTTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:80313775 original size:9 final size:9
Alignment explanation
Indices: 80313761--80313963 Score: 225
Period size: 9 Copynumber: 22.6 Consensus size: 9
80313751 TATTTATGTA
80313761 TTATGTAAG
1 TTATGTAAG
80313770 TTATGTAAG
1 TTATGTAAG
*
80313779 TTATGTGAG
1 TTATGTAAG
80313788 TTATGTAAG
1 TTATGTAAG
80313797 TTATGTAAG
1 TTATGTAAG
*
80313806 TTATGTGAG
1 TTATGTAAG
80313815 TTATGTAAG
1 TTATGTAAG
*
80313824 TTATGTGAG
1 TTATGTAAG
* *
80313833 GTATGTGAG
1 TTATGTAAG
80313842 TTATGTAAG
1 TTATGTAAG
*
80313851 TTATGATATG
1 TTATG-TAAG
*
80313861 ATATATATAAG
1 -T-TATGTAAG
80313872 TTAT-TAAG
1 TTATGTAAG
80313880 TTATGTAAG
1 TTATGTAAG
*
80313889 TTATGTGAG
1 TTATGTAAG
80313898 TTATGTAAG
1 TTATGTAAG
*
80313907 TTATGATATG
1 TTATG-TAAG
* * *
80313917 ATATAT-AT
1 TTATGTAAG
80313925 TTATGT-A-
1 TTATGTAAG
80313932 TTATGTAAG
1 TTATGTAAG
*
80313941 TTATGTAAA
1 TTATGTAAG
80313950 TTATGTAAG
1 TTATGTAAG
80313959 TTATG
1 TTATG
80313964 AAATTTAAAC
Statistics
Matches: 165, Mismatches: 22, Indels: 14
0.82 0.11 0.07
Matches are distributed among these distances:
7 6 0.04
8 14 0.08
9 128 0.78
10 10 0.06
11 4 0.02
12 3 0.02
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.45
Consensus pattern (9 bp):
TTATGTAAG
Found at i:80314101 original size:20 final size:20
Alignment explanation
Indices: 80314077--80314115 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
80314067 TCTGTTTTGG
80314077 TTATA-ATATGTTT-TGAAT
1 TTATATATATGTTTATGAAT
*
80314095 TTATATATATTTTTATGAAT
1 TTATATATATGTTTATGAAT
80314115 T
1 T
80314116 AAATTTATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 5 0.28
19 7 0.39
20 6 0.33
ACGTcount: A:0.33, C:0.00, G:0.08, T:0.59
Consensus pattern (20 bp):
TTATATATATGTTTATGAAT
Found at i:80314422 original size:21 final size:20
Alignment explanation
Indices: 80314398--80314442 Score: 58
Period size: 19 Copynumber: 2.3 Consensus size: 20
80314388 ATCTTGAAAG
80314398 TCAAAATAGTATATAAAAATA
1 TCAAAATA-TATATAAAAATA
*
80314419 TC-AAATATTTATAAAAATA
1 TCAAAATATATATAAAAATA
80314438 -CAAAA
1 TCAAAA
80314443 AAAAGTTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
18 1 0.05
19 14 0.64
20 5 0.23
21 2 0.09
ACGTcount: A:0.62, C:0.07, G:0.02, T:0.29
Consensus pattern (20 bp):
TCAAAATATATATAAAAATA
Found at i:80316968 original size:14 final size:14
Alignment explanation
Indices: 80316951--80316977 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
80316941 GGGGGAACTG
80316951 ATTTGGGGAAAATT
1 ATTTGGGGAAAATT
80316965 ATTTGGGGAAAAT
1 ATTTGGGGAAAAT
80316978 GTTAGGGATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.00, G:0.30, T:0.33
Consensus pattern (14 bp):
ATTTGGGGAAAATT
Found at i:80318077 original size:7 final size:7
Alignment explanation
Indices: 80318065--80318141 Score: 84
Period size: 7 Copynumber: 10.9 Consensus size: 7
80318055 GTTCTCCAAT
80318065 CCCTAAC
1 CCCTAAC
80318072 CCCTAA-
1 CCCTAAC
*
80318078 CCTTAAC
1 CCCTAAC
** *
80318085 CTTTTAAA
1 C-CCTAAC
80318093 CCCTAAC
1 CCCTAAC
80318100 CCCTAAC
1 CCCTAAC
*
80318107 CCCTTAAA
1 CCC-TAAC
80318115 CCCTAAC
1 CCCTAAC
80318122 CCCTAAC
1 CCCTAAC
80318129 CCCTAAC
1 CCCTAAC
80318136 CCCTAA
1 CCCTAA
80318142 AAACATAAAC
Statistics
Matches: 59, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
6 5 0.08
7 43 0.73
8 11 0.19
ACGTcount: A:0.31, C:0.48, G:0.00, T:0.21
Consensus pattern (7 bp):
CCCTAAC
Found at i:80318106 original size:22 final size:22
Alignment explanation
Indices: 80318088--80318141 Score: 92
Period size: 22 Copynumber: 2.5 Consensus size: 22
80318078 CCTTAACCTT
80318088 TTAAACCCTAACCCCTAACCCC
1 TTAAACCCTAACCCCTAACCCC
80318110 TTAAACCCTAACCCCTAACCCC
1 TTAAACCCTAACCCCTAACCCC
*
80318132 -TAACCCCTAA
1 TTAAACCCTAA
80318142 AAACATAAAC
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
21 9 0.29
22 22 0.71
ACGTcount: A:0.33, C:0.48, G:0.00, T:0.19
Consensus pattern (22 bp):
TTAAACCCTAACCCCTAACCCC
Found at i:80318435 original size:41 final size:40
Alignment explanation
Indices: 80318374--80318518 Score: 209
Period size: 40 Copynumber: 3.6 Consensus size: 40
80318364 ACATGAGGCA
* *
80318374 TTTTTCAAAAAGCGCAGCTAATGCTGGATCTATAGCGGCG
1 TTTTTCAAAAAGCGCTGCTAATGCTCGATCTATAGCGGCG
* *
80318414 TTTTTTTAAAAAGCGCTGCTAATGCTCGATCTATAGCGGCA
1 -TTTTTCAAAAAGCGCTGCTAATGCTCGATCTATAGCGGCG
* *
80318455 TTTTTCAAAAAGCACTGCTAATACTCGATCTATAGCGGCG
1 TTTTTCAAAAAGCGCTGCTAATGCTCGATCTATAGCGGCG
* *
80318495 TTTTTAAAAAAGCGCTACTAATGC
1 TTTTTCAAAAAGCGCTGCTAATGC
80318519 CATTAAAGCT
Statistics
Matches: 92, Mismatches: 12, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
40 56 0.61
41 36 0.39
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31
Consensus pattern (40 bp):
TTTTTCAAAAAGCGCTGCTAATGCTCGATCTATAGCGGCG
Found at i:80318475 original size:81 final size:80
Alignment explanation
Indices: 80318370--80318518 Score: 235
Period size: 81 Copynumber: 1.9 Consensus size: 80
80318360 ATAAACATGA
* * * * *
80318370 GGCATTTTTCAAAAAGCGCAGCTAATGCTGGATCTATAGCGGCGTTTTTTTAAAAAGCGCTGCTA
1 GGCATTTTTCAAAAAGCACAGCTAATACTCGATCTATAGCGGCG-TTTTTAAAAAAGCGCTACTA
80318435 ATGCTCGATCTATAGC
65 ATGCTCGATCTATAGC
*
80318451 GGCATTTTTCAAAAAGCACTGCTAATACTCGATCTATAGCGGCGTTTTTAAAAAAGCGCTACTAA
1 GGCATTTTTCAAAAAGCACAGCTAATACTCGATCTATAGCGGCGTTTTTAAAAAAGCGCTACTAA
80318516 TGC
66 TGC
80318519 CATTAAAGCT
Statistics
Matches: 62, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
80 22 0.35
81 40 0.65
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (80 bp):
GGCATTTTTCAAAAAGCACAGCTAATACTCGATCTATAGCGGCGTTTTTAAAAAAGCGCTACTAA
TGCTCGATCTATAGC
Found at i:80318723 original size:40 final size:40
Alignment explanation
Indices: 80318560--80318724 Score: 142
Period size: 40 Copynumber: 4.1 Consensus size: 40
80318550 TGCTTAATTT
* *
80318560 TTTTTGCAAAAATGCA--GCTAATGCTCAACCTATAGCGGCG
1 TTTTT-CAAAAA-GCATCGCTAATGCTCGATCTATAGCGGCG
* * * * *
80318600 CTTTT-AAAAA-AATAC-CATGAATGCTCCATCTATAGCGACA
1 TTTTTCAAAAAGCAT-CGC-T-AATGCTCGATCTATAGCGGCG
* * *
80318640 TTTTTCATAAAGCATCGCTGATGCTCGATCTATAGCGGTG
1 TTTTTCAAAAAGCATCGCTAATGCTCGATCTATAGCGGCG
* *
80318680 TTTTTCAAAAAGCGTCGCTAATGCTCGATCTATAGTGGCG
1 TTTTTCAAAAAGCATCGCTAATGCTCGATCTATAGCGGCG
80318720 TTTTT
1 TTTTT
80318725 ATTTAAGCGC
Statistics
Matches: 98, Mismatches: 19, Indels: 16
0.74 0.14 0.12
Matches are distributed among these distances:
36 1 0.01
38 6 0.06
39 1 0.01
40 81 0.83
41 6 0.06
42 3 0.03
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33
Consensus pattern (40 bp):
TTTTTCAAAAAGCATCGCTAATGCTCGATCTATAGCGGCG
Found at i:80320959 original size:25 final size:25
Alignment explanation
Indices: 80320899--80320963 Score: 69
Period size: 25 Copynumber: 2.6 Consensus size: 25
80320889 CTAGATAGAG
* * * *
80320899 ATATGCGACAAAAGCAATATGCAAA
1 ATATGCTACAAAGGCAACATACAAA
*
80320924 ATACG-TCACAAAGGCAACATACAAA
1 ATATGCT-ACAAAGGCAACATACAAA
80320949 ATATGCTACAAAGGC
1 ATATGCTACAAAGGC
80320964 CAAAAAAATT
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
25 31 0.97
26 1 0.03
ACGTcount: A:0.49, C:0.20, G:0.15, T:0.15
Consensus pattern (25 bp):
ATATGCTACAAAGGCAACATACAAA
Found at i:80321286 original size:7 final size:7
Alignment explanation
Indices: 80321276--80321315 Score: 53
Period size: 7 Copynumber: 5.6 Consensus size: 7
80321266 ACACATTTCA
80321276 CACACAT
1 CACACAT
80321283 CACACAT
1 CACACAT
80321290 CACACAT
1 CACACAT
*
80321297 CACCCGAT
1 CACAC-AT
*
80321305 CACATAT
1 CACACAT
80321312 CACA
1 CACA
80321316 ACATAAATCT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
7 24 0.83
8 5 0.17
ACGTcount: A:0.40, C:0.42, G:0.03, T:0.15
Consensus pattern (7 bp):
CACACAT
Found at i:80322080 original size:18 final size:17
Alignment explanation
Indices: 80322057--80322092 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
80322047 ACATATTTTA
*
80322057 TATTAATTCATGTTAATT
1 TATTAATGCATG-TAATT
80322075 TATTAATGCATGTAATT
1 TATTAATGCATGTAATT
80322092 T
1 T
80322093 TCACTGTGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.33, C:0.06, G:0.08, T:0.53
Consensus pattern (17 bp):
TATTAATGCATGTAATT
Found at i:80323439 original size:14 final size:13
Alignment explanation
Indices: 80323416--80323447 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
80323406 GGGATATCAA
80323416 AACAATAATTAAG
1 AACAATAATTAAG
80323429 AACACATAATTAAG
1 AACA-ATAATTAAG
80323443 AACAA
1 AACAA
80323448 GTTAAATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.62, C:0.12, G:0.06, T:0.19
Consensus pattern (13 bp):
AACAATAATTAAG
Found at i:80325981 original size:21 final size:21
Alignment explanation
Indices: 80325939--80325981 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
80325929 AATGATGCCT
* *
80325939 TGATCCAAAGTCAAGTAACAA
1 TGATCCAAAGCCAAGCAACAA
*
80325960 TGATCCAAAGCCAAGCAGCAA
1 TGATCCAAAGCCAAGCAACAA
80325981 T
1 T
80325982 ATTGAAGAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.44, C:0.23, G:0.16, T:0.16
Consensus pattern (21 bp):
TGATCCAAAGCCAAGCAACAA
Found at i:80329099 original size:34 final size:34
Alignment explanation
Indices: 80329056--80329124 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
80329046 TTTGGCCTAG
*
80329056 ATTGTTCAAAGATACTTATGTATAGGTGAGAAAC
1 ATTGTTCAAAGATACTTATGTATAGATGAGAAAC
80329090 ATTGTTCAAAGATACTTATGTATAGATGAGAAAC
1 ATTGTTCAAAGATACTTATGTATAGATGAGAAAC
80329124 A
1 A
80329125 ATGATAGATG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.41, C:0.09, G:0.19, T:0.32
Consensus pattern (34 bp):
ATTGTTCAAAGATACTTATGTATAGATGAGAAAC
Found at i:80331397 original size:31 final size:31
Alignment explanation
Indices: 80331359--80331423 Score: 130
Period size: 31 Copynumber: 2.1 Consensus size: 31
80331349 TTTGAAAGAC
80331359 AATTGATGCTCTCAATTGGAATTATTTTTGT
1 AATTGATGCTCTCAATTGGAATTATTTTTGT
80331390 AATTGATGCTCTCAATTGGAATTATTTTTGT
1 AATTGATGCTCTCAATTGGAATTATTTTTGT
80331421 AAT
1 AAT
80331424 GTAGGATTAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.28, C:0.09, G:0.15, T:0.48
Consensus pattern (31 bp):
AATTGATGCTCTCAATTGGAATTATTTTTGT
Found at i:80341067 original size:40 final size:40
Alignment explanation
Indices: 80341022--80341151 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
80341012 CGGAATATAA
80341022 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
80341062 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
80341102 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
80341142 CCGGATATAA
1 CCGGATATAA
80341152 TTTCCAGCAT
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:80341172 original size:80 final size:80
Alignment explanation
Indices: 80341038--80341187 Score: 194
Period size: 80 Copynumber: 1.9 Consensus size: 80
80341028 ATAACCACGT
* * *
80341038 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAACGCCTTCGGGGCTTAGCC
80341103 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * ** ** *
80341118 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCATTAACGTCTTCGGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAACGCCTTCGGGGCTTAGC
80341182 CCGGAT
65 CCGGAT
80341188 ATCATTCAAT
Statistics
Matches: 59, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
79 1 0.02
80 58 0.98
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAACGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:80350339 original size:27 final size:26
Alignment explanation
Indices: 80350291--80350350 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
80350281 GCGAGGCTGC
*
80350291 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
80350318 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
80350344 CAGATAT
1 CAGATAT
80350351 ATATATATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:80350443 original size:27 final size:26
Alignment explanation
Indices: 80350395--80350446 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
80350385 GCGAGGCTGC
*
80350395 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
80350421 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
80350447 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:80352861 original size:43 final size:43
Alignment explanation
Indices: 80352812--80352961 Score: 151
Period size: 43 Copynumber: 3.5 Consensus size: 43
80352802 GTTACCGAGA
*
80352812 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGACATTGTAT
* * * *
80352855 TGTGATTACGTGTAAGACCATGTCTGGGAAATTGACATCGTTAA
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGACATTG-TAT
** * * * **
80352899 T-CAATTTCATGTAAGACCCTGTCTGGGACAGTGACA-TCAAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGACATTGTAT
*
80352940 ATGTGATAACATGTAAGACCAT
1 -TGTGATTACATGTAAGACCAT
80352962 ATTTGGTATA
Statistics
Matches: 83, Mismatches: 21, Indels: 6
0.75 0.19 0.05
Matches are distributed among these distances:
41 1 0.01
42 1 0.01
43 78 0.94
44 3 0.04
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATGTCTGGGACATTGACATTGTAT
Found at i:80356396 original size:49 final size:49
Alignment explanation
Indices: 80356284--80356498 Score: 307
Period size: 49 Copynumber: 4.5 Consensus size: 49
80356274 TATCACAGTT
* *
80356284 ATACACTTCCAC-TTCCATCACATTGGCCATTCGGCCTTAT--CATATAT
1 ATACACTTTCACATT-CATCACATTGGCCATTCGGCCTTATCACATATAC
* *
80356331 ATATACTTTTACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
*
80356380 ATACACTTTCACATTCATCACATTTGCCATTCGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
*
80356429 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
*
80356478 --GCA-TGTTCACATTCATCACAT
1 ATACACT-TTCACATTCATCACAT
80356499 AAAATCCTAA
Statistics
Matches: 154, Mismatches: 10, Indels: 8
0.90 0.06 0.05
Matches are distributed among these distances:
46 1 0.01
47 52 0.34
48 2 0.01
49 99 0.64
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.34
Consensus pattern (49 bp):
ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
Found at i:80356399 original size:27 final size:27
Alignment explanation
Indices: 80356369--80356451 Score: 79
Period size: 27 Copynumber: 3.3 Consensus size: 27
80356359 ATTCGGCCTT
80356369 ATCACATATACATACACTTTCACATTC
1 ATCACATATACATACACTTTCACATTC
* * * *
80356396 ATCACAT-T---TGC-CATTCGGCCTT-
1 ATCACATATACATACACTTTC-ACATTC
80356418 ATCACATATACATACACTTTCACATTC
1 ATCACATATACATACACTTTCACATTC
80356445 ATCACAT
1 ATCACAT
80356452 TGGCCATTCG
Statistics
Matches: 41, Mismatches: 8, Indels: 14
0.65 0.13 0.22
Matches are distributed among these distances:
22 11 0.27
23 6 0.15
26 6 0.15
27 18 0.44
ACGTcount: A:0.33, C:0.30, G:0.04, T:0.34
Consensus pattern (27 bp):
ATCACATATACATACACTTTCACATTC
Found at i:80359148 original size:56 final size:56
Alignment explanation
Indices: 80359071--80359283 Score: 277
Period size: 56 Copynumber: 3.8 Consensus size: 56
80359061 GGGTGTCACA
* *
80359071 GATGCCAACGTATTAAACGTGGTCTTACTCGTACATACATATCGAAATCACATATC
1 GATGCCAACGTATTAAACGTGGTCTTACTCGCACACACATATCGAAATCACATATC
* *
80359127 GATGCCAACGTATTAAACGTGGTCTTACTCACACACACATATCGGAATCACATATC
1 GATGCCAACGTATTAAACGTGGTCTTACTCGCACACACATATCGAAATCACATATC
* * * * *
80359183 AATGCCAACGCATTAAACATGGTCTTAATCGCACACACATAT-TAGAATCACATATC
1 GATGCCAACGTATTAAACGTGGTCTTACTCGCACACACATATCGA-AATCACATATC
* * * *
80359239 GATGCCAACATATTAAATGTGGTCTTAGTCGTA-ATCACATATCGA
1 GATGCCAACGTATTAAACGTGGTCTTACTCGCACA-CACATATCGA
80359284 TGCCAACGTC
Statistics
Matches: 135, Mismatches: 19, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
55 1 0.01
56 133 0.99
57 1 0.01
ACGTcount: A:0.35, C:0.23, G:0.14, T:0.27
Consensus pattern (56 bp):
GATGCCAACGTATTAAACGTGGTCTTACTCGCACACACATATCGAAATCACATATC
Found at i:80359304 original size:43 final size:43
Alignment explanation
Indices: 80359228--80359323 Score: 120
Period size: 43 Copynumber: 2.2 Consensus size: 43
80359218 CACATATTAG
** * **
80359228 AATCACATATCGATGCCAACATATTAAATGTGGTCTTAGTCGT
1 AATCACATATCGATGCCAACATACCAAACGTGGTCTTACACGT
* * *
80359271 AATCACATATCGATGCCAACGTCCCAGACGTGGTCTTACACGT
1 AATCACATATCGATGCCAACATACCAAACGTGGTCTTACACGT
80359314 AATCACATAT
1 AATCACATAT
80359324 AAGAAATCCT
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.28
Consensus pattern (43 bp):
AATCACATATCGATGCCAACATACCAAACGTGGTCTTACACGT
Found at i:80363043 original size:25 final size:23
Alignment explanation
Indices: 80363014--80363079 Score: 70
Period size: 18 Copynumber: 3.0 Consensus size: 23
80363004 TCGTTGAGTG
80363014 GTCCGAGTTCATTATGGATGTGA
1 GTCCGAGTTCATTATGGATGTGA
*
80363037 GCATCCGAGCTCA-T-T-GA-GTG-
1 G--TCCGAGTTCATTATGGATGTGA
80363057 GTCCGAGTTCATTATGGATGTGA
1 GTCCGAGTTCATTATGGATGTGA
80363080 TGCCTGTGAC
Statistics
Matches: 34, Mismatches: 2, Indels: 14
0.68 0.04 0.28
Matches are distributed among these distances:
18 9 0.26
19 1 0.03
20 2 0.06
21 5 0.15
22 5 0.15
23 2 0.06
24 1 0.03
25 9 0.26
ACGTcount: A:0.21, C:0.17, G:0.30, T:0.32
Consensus pattern (23 bp):
GTCCGAGTTCATTATGGATGTGA
Found at i:80363055 original size:43 final size:43
Alignment explanation
Indices: 80362965--80363079 Score: 162
Period size: 43 Copynumber: 2.7 Consensus size: 43
80362955 TTCGAACTTG
* * * * *
80362965 TTGAGTGGTCCAAGTTCATGA-GATATGTG-GCATCCGGGCTCG
1 TTGAGTGGTCCGAGTTCATTATG-GATGTGAGCATCCGAGCTCA
80363007 TTGAGTGGTCCGAGTTCATTATGGATGTGAGCATCCGAGCTCA
1 TTGAGTGGTCCGAGTTCATTATGGATGTGAGCATCCGAGCTCA
80363050 TTGAGTGGTCCGAGTTCATTATGGATGTGA
1 TTGAGTGGTCCGAGTTCATTATGGATGTGA
80363080 TGCCTGTGAC
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
42 24 0.36
43 42 0.64
ACGTcount: A:0.20, C:0.17, G:0.32, T:0.31
Consensus pattern (43 bp):
TTGAGTGGTCCGAGTTCATTATGGATGTGAGCATCCGAGCTCA
Found at i:80365037 original size:18 final size:18
Alignment explanation
Indices: 80365010--80365053 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
80365000 CGTGTCCGAG
*
80365010 CCACACGGGCGTGTGTGA
1 CCACACGGGCATGTGTGA
*
80365028 CCACATGGGCATGTGTGA
1 CCACACGGGCATGTGTGA
80365046 CCACACGG
1 CCACACGG
80365054 CCTACCCACG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.20, C:0.30, G:0.34, T:0.16
Consensus pattern (18 bp):
CCACACGGGCATGTGTGA
Found at i:80371009 original size:2 final size:2
Alignment explanation
Indices: 80371002--80371029 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
80370992 ATCATATGCT
80371002 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
80371030 AGTGCCGAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:80371826 original size:56 final size:56
Alignment explanation
Indices: 80371764--80372010 Score: 365
Period size: 56 Copynumber: 4.4 Consensus size: 56
80371754 TCCCAGACAG
* * *
80371764 GGTCTTACTCGTAAACACATATCGAAATCACCTATCGATGCCAACGTATTAAACAT
1 GGTCTTACTCGTACACACATATCGAAATCACATATCGATGCCAACGTATTAAACGT
* * *
80371820 GGTCTTACTCGCACACACATATCGGAATCACATATCGATGCCAATGTATTAAACGT
1 GGTCTTACTCGTACACACATATCGAAATCACATATCGATGCCAACGTATTAAACGT
* * *
80371876 GGTCTTACTCGTACGCACATATTGAAATCAGATATCGATGCCAACGTATTAAACGT
1 GGTCTTACTCGTACACACATATCGAAATCACATATCGATGCCAACGTATTAAACGT
* *
80371932 GGTCTTACTC--ACACACACATCGAAATCACATATCGATGCCAACGTATTAAATGT
1 GGTCTTACTCGTACACACATATCGAAATCACATATCGATGCCAACGTATTAAACGT
80371986 GGTCTTACTCGTA-ATCACATATCGA
1 GGTCTTACTCGTACA-CACATATCGA
80372011 TGCCAACGTC
Statistics
Matches: 170, Mismatches: 18, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
54 49 0.29
55 1 0.01
56 120 0.71
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.28
Consensus pattern (56 bp):
GGTCTTACTCGTACACACATATCGAAATCACATATCGATGCCAACGTATTAAACGT
Found at i:80372006 original size:110 final size:111
Alignment explanation
Indices: 80371764--80372010 Score: 379
Period size: 110 Copynumber: 2.2 Consensus size: 111
80371754 TCCCAGACAG
*
80371764 GGTCTTACTCGTAAACACATATCGAAATCACCTATCGATGCCAACGTATTAAACATGGTCTTACT
1 GGTCTTACTCGTAAACACATATCGAAATCACATATCGATGCCAACGTATTAAACATGGTCTTACT
* * *
80371829 CGCACACACATATCGGAATCACATATCGATGCCAATGTATTAAACGT
66 C-CACACACACATCGAAATCACATATCGATGCCAACGTATTAAACGT
** * * *
80371876 GGTCTTACTCGTACGCACATATTGAAATCAGATATCGATGCCAACGTATTAAACGTGGTCTTACT
1 GGTCTTACTCGTAAACACATATCGAAATCACATATCGATGCCAACGTATTAAACATGGTCTTACT
*
80371941 -CACACACACATCGAAATCACATATCGATGCCAACGTATTAAATGT
66 CCACACACACATCGAAATCACATATCGATGCCAACGTATTAAACGT
*
80371986 GGTCTTACTCGTAATCACATATCGA
1 GGTCTTACTCGTAAACACATATCGA
80372011 TGCCAACGTC
Statistics
Matches: 122, Mismatches: 13, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
110 63 0.52
112 59 0.48
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.28
Consensus pattern (111 bp):
GGTCTTACTCGTAAACACATATCGAAATCACATATCGATGCCAACGTATTAAACATGGTCTTACT
CCACACACACATCGAAATCACATATCGATGCCAACGTATTAAACGT
Found at i:80372032 original size:43 final size:43
Alignment explanation
Indices: 80371955--80372052 Score: 117
Period size: 43 Copynumber: 2.3 Consensus size: 43
80371945 CACACATCGA
** ** *
80371955 AATCACATATCGATGCCAACGTATTAAATGTGGTCTTACT-CGT
1 AATCACATATCGATGCCAACGTAGCAAACATGGTCTTA-TACAT
* *
80371998 AATCACATATCGATGCCAACGTCGCAGACATGGTCTTATACAT
1 AATCACATATCGATGCCAACGTAGCAAACATGGTCTTATACAT
80372041 AATCACATATCG
1 AATCACATATCG
80372053 GAAATCCTAT
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
42 1 0.02
43 46 0.98
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.29
Consensus pattern (43 bp):
AATCACATATCGATGCCAACGTAGCAAACATGGTCTTATACAT
Found at i:80383175 original size:40 final size:40
Alignment explanation
Indices: 80383109--80383275 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
80383099 AAATTGAATG
* * *
80383109 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
80383148 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
80383188 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
80383228 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
80383268 ATATCCGG
1 ATATCCGG
80383276 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:80391628 original size:40 final size:40
Alignment explanation
Indices: 80391532--80391680 Score: 146
Period size: 40 Copynumber: 3.8 Consensus size: 40
80391522 AAATTGAATG
* * *
80391532 ATATCCGGGCTAAG-CCCGAAGACAATTGCTG-GA--AATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTG-TGCGAGTGACT
* * *
80391569 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGACT
* * *
80391609 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTGACT
* *
80391649 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
80391681 ACGTGATTAA
Statistics
Matches: 91, Mismatches: 15, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
37 15 0.16
38 14 0.15
39 3 0.03
40 57 0.63
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGACT
Found at i:80402778 original size:40 final size:40
Alignment explanation
Indices: 80402712--80402862 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
80402702 AAATTGAATG
* * *
80402712 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
80402751 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
80402791 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
80402831 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
80402863 ACGTGATTAA
Statistics
Matches: 91, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 16 0.18
40 73 0.80
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:80407978 original size:40 final size:40
Alignment explanation
Indices: 80407921--80408014 Score: 116
Period size: 40 Copynumber: 2.4 Consensus size: 40
80407911 ATTGAATGAT
* * * *
80407921 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGCTAAGACCCGAAGACAATTATGCTAGTAACTAC
* * * *
80407961 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGCTAAGACCCGAAGACAATTATGCTAGTAACTAC
80408001 ATCCGGGCTAAGAC
1 ATCCGGGCTAAGAC
80408015 AAGAAGGCAT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 45 1.00
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGACAATTATGCTAGTAACTAC
Found at i:80416561 original size:40 final size:40
Alignment explanation
Indices: 80416432--80416562 Score: 156
Period size: 40 Copynumber: 3.3 Consensus size: 40
80416422 TATGCTGGAA
* * *
80416432 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * *
80416472 GCTATATCCGGGCTAAGGCCCGAAGGCATTCGTGCGAGTT
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
80416512 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
*
80416552 ATTAAATCCGG
1 ATTATATCCGG
80416563 TTATATTCCG
Statistics
Matches: 74, Mismatches: 16, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:80429217 original size:39 final size:38
Alignment explanation
Indices: 80429126--80429287 Score: 182
Period size: 39 Copynumber: 4.2 Consensus size: 38
80429116 AAATTTAAAC
* * * * * *
80429126 CCGG-TATAATACCAGCTCGAAGCCTGCGGGACTTTAGC
1 CCGGATATAATTCCAGCACGTAGCCTGC-GGACCTAAGT
* *
80429164 CCGGACATATTTCCAGCACGTAGCCTGCGGACCTGAAGT
1 CCGGATATAATTCCAGCACGTAGCCTGCGGACCT-AAGT
* *
80429203 CCGGTTATAATTCCAGCACATAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACGTAGCCTGCGGACC-TAAGT
*
80429242 CCGGATATAATTCCAGCACGTAGCCTGTGGACCCTAAGT
1 CCGGATATAATTCCAGCACGTAGCCTGCGGA-CCTAAGT
80429281 CCGGATA
1 CCGGATA
80429288 AACATCACTA
Statistics
Matches: 105, Mismatches: 15, Indels: 7
0.83 0.12 0.06
Matches are distributed among these distances:
38 9 0.09
39 93 0.89
40 3 0.03
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.22
Consensus pattern (38 bp):
CCGGATATAATTCCAGCACGTAGCCTGCGGACCTAAGT
Found at i:80436912 original size:39 final size:38
Alignment explanation
Indices: 80436859--80436982 Score: 167
Period size: 39 Copynumber: 3.2 Consensus size: 38
80436849 GGATTTTAGC
* *
80436859 CCGGACATATTTCCAGCACGTAGCCTGCGGACCTGAAGT
1 CCGGATATAATTCCAGCACGTAGCCTGCGGACCT-AAGT
* *
80436898 CCGGTTATAATTCCAGCACATAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACGTAGCCTGCGGACC-TAAGT
* *
80436937 TCGGATATAATTCCAGCACGTAGCCTGCAGACCCTAAGT
1 CCGGATATAATTCCAGCACGTAGCCTGCGGA-CCTAAGT
80436976 CCGGATA
1 CCGGATA
80436983 AACATCGTTG
Statistics
Matches: 74, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
39 71 0.96
40 3 0.04
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.23
Consensus pattern (38 bp):
CCGGATATAATTCCAGCACGTAGCCTGCGGACCTAAGT
Found at i:80440740 original size:27 final size:26
Alignment explanation
Indices: 80440684--80440740 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
80440674 CAACCTTAAC
* * *
80440684 CCTAGGGGTATATCAGTAATTTTGCT
1 CCTAGGGGTAAATCAGTAATTTTCCA
*
80440710 CCTAGGGGTAAATCCGTAAATTTTCCA
1 CCTAGGGGTAAATCAGT-AATTTTCCA
80440737 CCTA
1 CCTA
80440741 TAAAGGTATT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 15 0.58
27 11 0.42
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.33
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTTTCCA
Found at i:80457276 original size:28 final size:29
Alignment explanation
Indices: 80457209--80457309 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
80457199 ATAGTGAATC
*
80457209 CGCACACTTAGTGCTATATACATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
80457238 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
80457266 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
80457296 CGCACACTTAGTGC
1 CGCACACTTAGTGC
80457310 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.36
29 20 0.31
30 19 0.30
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:80463657 original size:27 final size:28
Alignment explanation
Indices: 80463600--80463669 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
80463590 AAATTTGTAC
**
80463600 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
80463628 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
80463655 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
80463670 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:80463678 original size:27 final size:27
Alignment explanation
Indices: 80463600--80463681 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
80463590 AAATTTGTAC
* *
80463600 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
80463628 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
80463655 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
80463682 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:80469847 original size:39 final size:38
Alignment explanation
Indices: 80469756--80469917 Score: 182
Period size: 39 Copynumber: 4.2 Consensus size: 38
80469746 AAATTTAAAC
* * * * * *
80469756 CCGG-TATAATACCAGCTCGAAGCCTGCGGGACTTTAGC
1 CCGGATATAATTCCAGCACGTAGCCTGC-GGACCTAAGT
* *
80469794 CCGGACATATTTCCAGCACGTAGCCTGCGGACCTGAAGT
1 CCGGATATAATTCCAGCACGTAGCCTGCGGACCT-AAGT
* *
80469833 CCGGTTATAATTCCAGCACATAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACGTAGCCTGCGGACC-TAAGT
*
80469872 CCGGATATAATTCCAGCACGTAGCCTGTGGACCCTAAGT
1 CCGGATATAATTCCAGCACGTAGCCTGCGGA-CCTAAGT
80469911 CCGGATA
1 CCGGATA
80469918 AACATCACTA
Statistics
Matches: 105, Mismatches: 15, Indels: 7
0.83 0.12 0.06
Matches are distributed among these distances:
38 9 0.09
39 93 0.89
40 3 0.03
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.22
Consensus pattern (38 bp):
CCGGATATAATTCCAGCACGTAGCCTGCGGACCTAAGT
Found at i:80477469 original size:39 final size:38
Alignment explanation
Indices: 80477416--80477539 Score: 167
Period size: 39 Copynumber: 3.2 Consensus size: 38
80477406 GGATTTTAGC
* *
80477416 CCGGACATATTTCCAGCACGTAGCCTGCGGACCTGAAGT
1 CCGGATATAATTCCAGCACGTAGCCTGCGGACCT-AAGT
* *
80477455 CCGGTTATAATTCCAGCACATAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACGTAGCCTGCGGACC-TAAGT
* *
80477494 TCGGATATAATTCCAGCACGTAGCCTGCAGACCCTAAGT
1 CCGGATATAATTCCAGCACGTAGCCTGCGGA-CCTAAGT
80477533 CCGGATA
1 CCGGATA
80477540 AACATCGTTG
Statistics
Matches: 74, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
39 71 0.96
40 3 0.04
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.23
Consensus pattern (38 bp):
CCGGATATAATTCCAGCACGTAGCCTGCGGACCTAAGT
Found at i:80477917 original size:29 final size:28
Alignment explanation
Indices: 80477841--80477943 Score: 179
Period size: 29 Copynumber: 3.6 Consensus size: 28
80477831 TTCCAGCTGC
80477841 CACACTTAGTGCCAATTATTTTCCAGCACG
1 CACACTTAGTGCCAA-TA-TTTCCAGCACG
80477871 CACACTTAGTGCCAATATTTCCAGCACG
1 CACACTTAGTGCCAATATTTCCAGCACG
80477899 CACACTTAGTGCCATATATTTCCAGCACG
1 CACACTTAGTGCCA-ATATTTCCAGCACG
80477928 CACACTTAGTGCCAAT
1 CACACTTAGTGCCAAT
80477944 CTCGACACCA
Statistics
Matches: 72, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
28 27 0.38
29 30 0.42
30 15 0.21
ACGTcount: A:0.28, C:0.31, G:0.14, T:0.27
Consensus pattern (28 bp):
CACACTTAGTGCCAATATTTCCAGCACG
Found at i:80486007 original size:29 final size:29
Alignment explanation
Indices: 80485979--80486110 Score: 210
Period size: 29 Copynumber: 4.6 Consensus size: 29
80485969 CCTCCGAGCT
** * *
80485979 CGCACACCCAGTGCCATATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
80486008 TGCACACTTAGTGCCAAATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
80486037 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
80486066 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
80486095 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
80486111 ATCTCGTCAC
Statistics
Matches: 95, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 95 1.00
ACGTcount: A:0.27, C:0.33, G:0.14, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:80486021 original size:87 final size:87
Alignment explanation
Indices: 80485921--80486111 Score: 215
Period size: 87 Copynumber: 2.2 Consensus size: 87
80485911 TACTCGATTT
** * * *
80485921 CGCACACTTAGTGCCACGTAATTT-AAGCTCGCACACACAGTGCCATA-CCCTCCGAGCTCGCAC
1 CGCACACTTAGTGCCAAAT-ATTTCAAGCACGCACACACAGTGCCATATACCTCC-AGCACGCAC
* *
80485984 ACCCAGTGCCATATTTTTCCAGCT
64 ACCCAGTGCCATATATTTCCAGCA
* * ** **
80486008 TGCACACTTAGTGCCAAATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCACGCACAC
1 CGCACACTTAGTGCCAAATATTTCAAGCACGCACACACAGTGCCATATACCTCCAGCACGCACAC
**
80486073 TTAGTGCCATATATTTCCAGCA
66 CCAGTGCCATATATTTCCAGCA
80486095 CGCACACTTAGTGCCAA
1 CGCACACTTAGTGCCAA
80486112 TCTCGTCACC
Statistics
Matches: 86, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
86 4 0.05
87 79 0.92
88 3 0.03
ACGTcount: A:0.27, C:0.34, G:0.15, T:0.25
Consensus pattern (87 bp):
CGCACACTTAGTGCCAAATATTTCAAGCACGCACACACAGTGCCATATACCTCCAGCACGCACAC
CCAGTGCCATATATTTCCAGCA
Found at i:80492318 original size:85 final size:85
Alignment explanation
Indices: 80492160--80492319 Score: 189
Period size: 85 Copynumber: 1.9 Consensus size: 85
80492150 TGAAACATCA
* * * * *
80492160 TGTAAGACCATGTCTAGGACACAGGCCTCGATTGATATTTACGTATAAGACGATGTCTAGGACAT
1 TGTAAGACCATGTCTAGGACACAGGCATCGATTGATATTTACATATAAGACCACGTCCAGGACAT
*
80492225 CTGCATTGTATCTGATTTCG
66 CGGCATTGTATCTGATTTCG
* * *
80492245 TGTAAGACCATGTCTGGGACAGAGGCATCGATATTGA-A-TTACATGTAAGACCACGTCCAGGAC
1 TGTAAGACCATGTCTAGGACACAGGCATCG--ATTGATATTTACATATAAGACCACGTCCAGGAC
* *
80492308 GTCGGTATTGTA
64 ATCGGCATTGTA
80492320 CTTGTTTATG
Statistics
Matches: 62, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
85 56 0.90
86 1 0.02
87 5 0.08
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (85 bp):
TGTAAGACCATGTCTAGGACACAGGCATCGATTGATATTTACATATAAGACCACGTCCAGGACAT
CGGCATTGTATCTGATTTCG
Found at i:80496244 original size:40 final size:38
Alignment explanation
Indices: 80496184--80496291 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
80496174 ATCACGATTT
*
80496184 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
80496224 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
80496264 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
80496292 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:80504194 original size:18 final size:18
Alignment explanation
Indices: 80504171--80504206 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
80504161 CACATGGGCT
80504171 AAAGGCACGGGCGTGTCC
1 AAAGGCACGGGCGTGTCC
*
80504189 AAAGGCACGGGTGTGTCC
1 AAAGGCACGGGCGTGTCC
80504207 TAAGCCACAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.22, C:0.25, G:0.39, T:0.14
Consensus pattern (18 bp):
AAAGGCACGGGCGTGTCC
Found at i:80511927 original size:20 final size:20
Alignment explanation
Indices: 80511902--80511991 Score: 81
Period size: 20 Copynumber: 4.3 Consensus size: 20
80511892 AAATAAGAAG
80511902 TGCCTCTATTTGCACTTCGA
1 TGCCTCTATTTGCACTTCGA
* *
80511922 TGCCTCTGTTTGCACTTCGG
1 TGCCTCTATTTGCACTTCGA
* * *
80511942 TGCCTCTATATTTTCACTACGG
1 TGCCTC--TATTTGCACTTCGA
* * *
80511964 TGCCTCTGTTAGCATTTCGA
1 TGCCTCTATTTGCACTTCGA
80511984 TGCTCTCT
1 TGC-CTCT
80511992 GGTGTGTTTT
Statistics
Matches: 56, Mismatches: 11, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
20 35 0.62
21 4 0.07
22 17 0.30
ACGTcount: A:0.12, C:0.29, G:0.18, T:0.41
Consensus pattern (20 bp):
TGCCTCTATTTGCACTTCGA
Found at i:80511954 original size:42 final size:41
Alignment explanation
Indices: 80511901--80511991 Score: 103
Period size: 42 Copynumber: 2.2 Consensus size: 41
80511891 AAAATAAGAA
* *
80511901 GTGCCTC-TATTTGCACTTCGATGCCTCTGTTTGCACTTCG
1 GTGCCTCTTATTTGCACTACGATGCCTCTGTTAGCACTTCG
* * *
80511941 GTGCCTCTATATTTTCACTACGGTGCCTCTGTTAGCATTTCG
1 GTGCCTCT-TATTTGCACTACGATGCCTCTGTTAGCACTTCG
*
80511983 ATGCTCTCT
1 GTGC-CTCT
80511992 GGTGTGTTTT
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
40 7 0.17
42 31 0.74
43 4 0.10
ACGTcount: A:0.12, C:0.29, G:0.19, T:0.41
Consensus pattern (41 bp):
GTGCCTCTTATTTGCACTACGATGCCTCTGTTAGCACTTCG
Found at i:80515844 original size:9 final size:9
Alignment explanation
Indices: 80515830--80515856 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
80515820 ATGTGGTAAG
80515830 ATTTTGTGT
1 ATTTTGTGT
80515839 ATTTTGTGT
1 ATTTTGTGT
80515848 ATTTTGTGT
1 ATTTTGTGT
80515857 TTTGTGCAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.11, C:0.00, G:0.22, T:0.67
Consensus pattern (9 bp):
ATTTTGTGT
Found at i:80516575 original size:35 final size:35
Alignment explanation
Indices: 80516536--80516709 Score: 269
Period size: 35 Copynumber: 5.0 Consensus size: 35
80516526 TATATGAACC
*
80516536 TTGTATAATCGGCCATATGTGATGATATATTGAAT
1 TTGTATAATCAGCCATATGTGATGATATATTGAAT
*
80516571 TTGTATACTCAGCCATATGTGATGATATATTGAAT
1 TTGTATAATCAGCCATATGTGATGATATATTGAAT
* *
80516606 TTGTATATTCAGCCATATGTGATGGTATA-TGAAT
1 TTGTATAATCAGCCATATGTGATGATATATTGAAT
* * *
80516640 TTGTATATTCGGCTATATGTGATGATATATTGAATT
1 TTGTATAATCAGCCATATGTGATGATATATTGAA-T
80516676 TTGTATAATCAGCCATATGTGATGATATATTGAA
1 TTGTATAATCAGCCATATGTGATGATATATTGAA
80516710 CATTTTATAT
Statistics
Matches: 127, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
34 31 0.24
35 64 0.50
36 32 0.25
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (35 bp):
TTGTATAATCAGCCATATGTGATGATATATTGAAT
Found at i:80516769 original size:50 final size:50
Alignment explanation
Indices: 80516697--80516794 Score: 112
Period size: 50 Copynumber: 2.0 Consensus size: 50
80516687 GCCATATGTG
* * *
80516697 ATGATATATTGAACATTTTATAT-TCGGTC-TAATAGGTATGTACTTATGAA
1 ATGATATAATGAACATTGTATATCT-GGTCAT-ATAGGTAAGTACTTATGAA
*
80516747 ATGATATAATGAAC-TTGGTATATCTGGTCATATAGGTAAGTATTTATG
1 ATGATATAATGAACATT-GTATATCTGGTCATATAGGTAAGTACTTATG
80516795 TGGTGTTCCA
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
49 2 0.05
50 37 0.90
51 2 0.05
ACGTcount: A:0.34, C:0.07, G:0.18, T:0.41
Consensus pattern (50 bp):
ATGATATAATGAACATTGTATATCTGGTCATATAGGTAAGTACTTATGAA
Found at i:80523710 original size:37 final size:36
Alignment explanation
Indices: 80523660--80523746 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
80523650 TACGAAGTCT
80523660 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
80523696 GTACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
80523733 TCACCCGGAACATA
1 T-ACCCGG-ACATA
80523747 TTTCCAAGTT
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 42 0.88
38 5 0.10
ACGTcount: A:0.26, C:0.33, G:0.20, T:0.21
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:80523865 original size:51 final size:51
Alignment explanation
Indices: 80523795--80523918 Score: 189
Period size: 49 Copynumber: 2.5 Consensus size: 51
80523785 ATTCACATTA
* * * *
80523795 GCCATTCGGCTTTACCACATATATATATACACTTTCACATTCATCACGTCG
1 GCCATTAGGCCTTATCACATATATATATACACTTTCACATTCATCACATCG
*
80523846 GCCATTAGGCCTTATCAC--ATATATATACATTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATATATACACTTTCACATTCATCACATCG
80523895 GCCATTAGGCCTTATCACATATAT
1 GCCATTAGGCCTTATCACATATAT
80523919 TATTATGTAC
Statistics
Matches: 66, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
49 47 0.71
51 19 0.29
ACGTcount: A:0.29, C:0.27, G:0.10, T:0.34
Consensus pattern (51 bp):
GCCATTAGGCCTTATCACATATATATATACACTTTCACATTCATCACATCG
Found at i:80523882 original size:49 final size:49
Alignment explanation
Indices: 80523815--80523918 Score: 190
Period size: 49 Copynumber: 2.1 Consensus size: 49
80523805 TTTACCACAT
*
80523815 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
80523864 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
80523913 ATATAT
1 ATATAT
80523919 TATTATGTAC
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 53 1.00
ACGTcount: A:0.31, C:0.26, G:0.09, T:0.35
Consensus pattern (49 bp):
ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:80527086 original size:137 final size:136
Alignment explanation
Indices: 80526840--80527125 Score: 482
Period size: 137 Copynumber: 2.1 Consensus size: 136
80526830 CATTGGGTCT
** * *
80526840 AAGCCCATTCAGGTAACAGTGGTATTGGGCCAGAGCCCTTTTTAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
* * *
80526905 AGCCCCTTATTTAGATAACAGTATAACCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAAAAGTATAACCCATAGGCCCATTTCAAAATACATGCAACATCAAT-AA
80526970 CATATGC
130 CATATGC
80526977 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
**
80527042 AGCCCCTTATTCAGATAAAAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
66 AGCCCCTTATTCAGATAAAAGTATAACCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
80527107 ATATGC
131 ATATGC
80527113 AAGCCCATTTGGG
1 AAGCCCATTTGGG
80527126 GAGACTACTC
Statistics
Matches: 140, Mismatches: 9, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
136 22 0.16
137 118 0.84
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.26
Consensus pattern (136 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAAAAGTATAACCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
ATATGC
Found at i:80528947 original size:26 final size:26
Alignment explanation
Indices: 80528911--80528994 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
80528901 CATGAAATTC
80528911 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
80528937 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
80528963 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
80528989 TTATCA
1 TTATCA
80528995 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:80531002 original size:40 final size:40
Alignment explanation
Indices: 80530939--80531046 Score: 162
Period size: 40 Copynumber: 2.7 Consensus size: 40
80530929 CCCCTGTTTG
* * *
80530939 GTACCCCTGAATGCACATCTGTGCCCTTGTTTGTATTTCA
1 GTACCCCTAAATGCACATCTGTGCCCCTGTTTGTAGTTCA
* *
80530979 GTACCCCTAAATGCGCATTTGTGCCCCTGTTTGTAGTTCA
1 GTACCCCTAAATGCACATCTGTGCCCCTGTTTGTAGTTCA
*
80531019 GTACCCCTAAATGCACATCTATGCCCCT
1 GTACCCCTAAATGCACATCTGTGCCCCT
80531047 AATTGCACTT
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.19, C:0.31, G:0.17, T:0.33
Consensus pattern (40 bp):
GTACCCCTAAATGCACATCTGTGCCCCTGTTTGTAGTTCA
Found at i:80539164 original size:40 final size:39
Alignment explanation
Indices: 80538999--80539182 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
80538989 AAATTGAATG
* * *
80538999 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
80539039 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
80539079 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
80539119 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
80539158 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
80539183 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:80539207 original size:80 final size:81
Alignment explanation
Indices: 80539039--80539227 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
80539029 GCTGGAAATT
* * * *
80539039 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
80539104 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
80539120 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
80539183 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
80539199 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
80539228 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:80547260 original size:40 final size:39
Alignment explanation
Indices: 80547095--80547278 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
80547085 AAATTGAATG
* * *
80547095 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
80547135 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
80547175 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
80547215 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
80547254 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
80547279 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:80547303 original size:80 final size:81
Alignment explanation
Indices: 80547135--80547323 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
80547125 GCTGGAAATT
* * * *
80547135 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
80547200 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
80547216 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
80547279 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
80547295 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
80547324 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:80554659 original size:27 final size:28
Alignment explanation
Indices: 80554602--80554671 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
80554592 AAATTTGTAC
**
80554602 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
80554630 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
80554657 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
80554672 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:80554680 original size:27 final size:27
Alignment explanation
Indices: 80554602--80554683 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
80554592 AAATTTGTAC
* *
80554602 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
80554630 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
80554657 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
80554684 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:80559366 original size:28 final size:29
Alignment explanation
Indices: 80559299--80559399 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
80559289 ATAGTGAATC
*
80559299 CGCACACTTAGTGCTATATACATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
80559328 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
80559356 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
80559386 CGCACACTTAGTGC
1 CGCACACTTAGTGC
80559400 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.36
29 20 0.31
30 19 0.30
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:80564475 original size:2 final size:2
Alignment explanation
Indices: 80564468--80564493 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
80564458 TTCACTTGGC
80564468 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
80564494 CCAACCATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:80568765 original size:44 final size:44
Alignment explanation
Indices: 80568680--80568765 Score: 127
Period size: 44 Copynumber: 2.0 Consensus size: 44
80568670 TACAAGTATC
* *
80568680 GCATCCATTATGAACTCGGACCAACTCAACGAGCTCGGATGCTA
1 GCATCCATAATGAACTCGGACCAACTCAACGAGCTCAGATGCTA
* * *
80568724 GCATCCATAATGAACTCGGACTAACTCAACGAGTTTAGATGC
1 GCATCCATAATGAACTCGGACCAACTCAACGAGCTCAGATGC
80568766 CTCATATATA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 37 1.00
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.22
Consensus pattern (44 bp):
GCATCCATAATGAACTCGGACCAACTCAACGAGCTCAGATGCTA
Found at i:80573160 original size:79 final size:82
Alignment explanation
Indices: 80573020--80573204 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
80573010 TCGAATGATG
* * *
80573020 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
80573084 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
80573100 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
80573162 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
80573180 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
80573205 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 34 0.37
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:80573212 original size:40 final size:40
Alignment explanation
Indices: 80573021--80573212 Score: 151
Period size: 40 Copynumber: 4.8 Consensus size: 40
80573011 CGAATGATGT
* * * * *
80573021 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
** * * * * *
80573061 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC
* * *
80573101 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
*
80573140 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
* *
80573180 CCGGGCTT-CGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTC
80573213 GTTATATCCG
Statistics
Matches: 126, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
39 33 0.26
40 82 0.65
41 11 0.09
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:80573235 original size:79 final size:79
Alignment explanation
Indices: 80573020--80573237 Score: 183
Period size: 79 Copynumber: 2.7 Consensus size: 79
80573010 TCGAATGATG
* * * * ** *
80573020 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGA-TCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-AAGTCACTAAACCCGGGTTA-AATTCCGAAGGCAT
*
80573083 TCGTGCGAGTTAATAAA
63 TCGTGCGAGTCAATAAA
* * * *
80573100 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
*
80573165 TGCGAGTCACTATAA
66 TGCGAGTCAATA-AA
** * ** * *
80573180 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGG
80573238 TACGTGATTC
Statistics
Matches: 113, Mismatches: 21, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
79 69 0.61
80 44 0.39
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
TGCGAGTCAATAAA
Found at i:80581197 original size:79 final size:82
Alignment explanation
Indices: 80581057--80581241 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
80581047 TCGAATGATG
* * *
80581057 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
80581121 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
80581137 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
80581199 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
80581217 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
80581242 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 34 0.37
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:80581249 original size:40 final size:40
Alignment explanation
Indices: 80581058--80581249 Score: 151
Period size: 40 Copynumber: 4.8 Consensus size: 40
80581048 CGAATGATGT
* * * * *
80581058 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
** * * * * *
80581098 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC
* * *
80581138 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
*
80581177 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
* *
80581217 CCGGGCTT-CGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTC
80581250 GTTATATCCG
Statistics
Matches: 126, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
39 33 0.26
40 82 0.65
41 11 0.09
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:80581272 original size:79 final size:79
Alignment explanation
Indices: 80581057--80581274 Score: 183
Period size: 79 Copynumber: 2.7 Consensus size: 79
80581047 TCGAATGATG
* * * * ** *
80581057 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGA-TCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-AAGTCACTAAACCCGGGTTA-AATTCCGAAGGCAT
*
80581120 TCGTGCGAGTTAATAAA
63 TCGTGCGAGTCAATAAA
* * * *
80581137 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
*
80581202 TGCGAGTCACTATAA
66 TGCGAGTCAATA-AA
** * ** * *
80581217 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGG
80581275 TACGTGATTC
Statistics
Matches: 113, Mismatches: 21, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
79 69 0.61
80 44 0.39
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
TGCGAGTCAATAAA
Found at i:80588371 original size:96 final size:96
Alignment explanation
Indices: 80588201--80588377 Score: 300
Period size: 96 Copynumber: 1.8 Consensus size: 96
80588191 TTCTTTTTAC
* *
80588201 TCCTCTTTGCCCTCTTGGCTTCAGCTTTTCCCTTGCTCAAGCCAAGCTTCTTGGGCTCCTTGTTT
1 TCCTCTTTGCCCTCTTGGCTTCAGCTCTTCCCTTGCTCAAACCAAGCTTCTTGGGCTCCTTGTTT
*
80588266 CCTCCATCATTCCCTTTGATGACAGATGTGT
66 ACTCCATCATTCCCTTTGATGACAGATGTGT
**
80588297 TCCTCTTTGCCCTCTTGGCTTTGGCTCTTCCCTTGCTCAAACCAAGCTTCTTGGGCTCCTTGTTT
1 TCCTCTTTGCCCTCTTGGCTTCAGCTCTTCCCTTGCTCAAACCAAGCTTCTTGGGCTCCTTGTTT
*
80588362 ACTCTATCATTCCCTT
66 ACTCCATCATTCCCTT
80588378 CGATTACAAA
Statistics
Matches: 75, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
96 75 1.00
ACGTcount: A:0.11, C:0.33, G:0.15, T:0.41
Consensus pattern (96 bp):
TCCTCTTTGCCCTCTTGGCTTCAGCTCTTCCCTTGCTCAAACCAAGCTTCTTGGGCTCCTTGTTT
ACTCCATCATTCCCTTTGATGACAGATGTGT
Found at i:80589173 original size:16 final size:17
Alignment explanation
Indices: 80589152--80589190 Score: 62
Period size: 16 Copynumber: 2.4 Consensus size: 17
80589142 TGTGTAATGC
80589152 CCCAAAAATCCCGAAA-
1 CCCAAAAATCCCGAAAT
*
80589168 CCCAAAAATCTCGAAAT
1 CCCAAAAATCCCGAAAT
80589185 CCCAAA
1 CCCAAA
80589191 CTTTCTTTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 15 0.71
17 6 0.29
ACGTcount: A:0.49, C:0.36, G:0.05, T:0.10
Consensus pattern (17 bp):
CCCAAAAATCCCGAAAT
Found at i:80591509 original size:24 final size:23
Alignment explanation
Indices: 80591477--80591585 Score: 128
Period size: 24 Copynumber: 4.6 Consensus size: 23
80591467 ACCAAACGTT
* **
80591477 GCACACATAGTGCTTATTATGTTC
1 GCACACATAGTGCTTAGTA-AATC
*
80591501 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
80591525 GCACACATAGTGCTATAGTAAATC
1 GCACACATAGTGCT-TAGTAAATC
*
80591549 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
*
80591573 GTACACATAGTGC
1 GCACACATAGTGC
80591586 ATTTGAGATT
Statistics
Matches: 75, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
23 2 0.03
24 67 0.89
25 6 0.08
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (23 bp):
GCACACATAGTGCTTAGTAAATC
Found at i:80591551 original size:48 final size:48
Alignment explanation
Indices: 80591477--80591585 Score: 166
Period size: 48 Copynumber: 2.3 Consensus size: 48
80591467 ACCAAACGTT
* **
80591477 GCACACATAGTGCTTATTATGTTCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCTTAGTATAATCGCACACATAGTGCCATAGTAAATC
80591525 GCACACATAGTGCTATAGTA-AATCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCT-TAGTATAATCGCACACATAGTGCCATAGTAAATC
*
80591573 GTACACATAGTGC
1 GCACACATAGTGC
80591586 ATTTGAGATT
Statistics
Matches: 56, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
48 52 0.93
49 4 0.07
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (48 bp):
GCACACATAGTGCTTAGTATAATCGCACACATAGTGCCATAGTAAATC
Found at i:80597862 original size:40 final size:39
Alignment explanation
Indices: 80597817--80597946 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
80597807 CGGAATACAA
80597817 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* *
80597857 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* * * *
80597897 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACGAA-TGCCTTCGGGTCTTAGC
80597937 CCGGATATAA
1 CCGGATATAA
80597947 TTTCCAGCAT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.23
Consensus pattern (39 bp):
CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
Found at i:80605927 original size:40 final size:39
Alignment explanation
Indices: 80605882--80606011 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
80605872 CGGAATACAA
80605882 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* *
80605922 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* * * *
80605962 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACGAA-TGCCTTCGGGTCTTAGC
80606002 CCGGATATAA
1 CCGGATATAA
80606012 TTTCCAGCAT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.23
Consensus pattern (39 bp):
CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
Found at i:80609537 original size:40 final size:40
Alignment explanation
Indices: 80609487--80609634 Score: 194
Period size: 40 Copynumber: 3.7 Consensus size: 40
80609477 GAAATTATAA
*
80609487 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGGCTACAT
*
80609527 CCGGGCTAAGACCTGAAGGCAATTGTGCTAGTGGCTACAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGGCTACAT
* * *
80609567 CCGGGCTAAGACCTGAAGGC-ATTCGTGCGAGT--CATTCTAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTGGC-TAC-AT
*
80609607 CCGGGCTAAGACCCGAAGGCATTTGTGC
1 CCGGGCTAAGACCCGAAGGCAATTGTGC
80609635 AAATCGTGAT
Statistics
Matches: 98, Mismatches: 6, Indels: 8
0.88 0.05 0.07
Matches are distributed among these distances:
38 1 0.01
39 5 0.05
40 90 0.92
41 2 0.02
ACGTcount: A:0.24, C:0.24, G:0.30, T:0.22
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGGCTACAT
Found at i:80609675 original size:80 final size:80
Alignment explanation
Indices: 80609487--80609675 Score: 179
Period size: 80 Copynumber: 2.4 Consensus size: 80
80609477 GAAATTATAA
* * * *
80609487 CCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGGC-TAC-ATCCGGGCTAAGACCTGAAGGCAA
1 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGT--CATTCTATCCGGGCTAAGACCCGAAGGCAA
* * *
80609549 TTGTGCTAGTGGCTACAT
63 TTGTGCAAATCGCTACAT
* *
80609567 CCGGGCTAAGACCTGAAGGCATTCGTGCGAGTCATTCTATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTCTATCCGGGCTAAGACCCGAAGGCAATTG
*
80609632 TGCAAATCG-TGATAT
66 TGCAAATCGCT-ACAT
* * * * *
80609647 CCGGGTTAAGTCCCGTAGGCCTTGGTGCG
1 CCGGGCTAAGACCCGAAGGCATTCGTGCG
80609676 GGTTACCATA
Statistics
Matches: 89, Mismatches: 16, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
78 1 0.01
79 6 0.07
80 82 0.92
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTCTATCCGGGCTAAGACCCGAAGGCAATTG
TGCAAATCGCTACAT
Found at i:80613722 original size:24 final size:23
Alignment explanation
Indices: 80613690--80613798 Score: 137
Period size: 24 Copynumber: 4.6 Consensus size: 23
80613680 ACCAAACGTT
* **
80613690 GCACACATAGTGCTTATTATGTTC
1 GCACACATAGTGCTTAGTA-AATC
*
80613714 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
80613738 GCACACATAGTGCTATAGTAAATC
1 GCACACATAGTGCT-TAGTAAATC
*
80613762 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
80613786 GCACACATAGTGC
1 GCACACATAGTGC
80613799 ATTTGAGATT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
23 2 0.03
24 68 0.89
25 6 0.08
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (23 bp):
GCACACATAGTGCTTAGTAAATC
Found at i:80613764 original size:48 final size:48
Alignment explanation
Indices: 80613690--80613798 Score: 175
Period size: 48 Copynumber: 2.3 Consensus size: 48
80613680 ACCAAACGTT
* **
80613690 GCACACATAGTGCTTATTATGTTCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCTTAGTATAATCGCACACATAGTGCCATAGTAAATC
80613738 GCACACATAGTGCTATAGTA-AATCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCT-TAGTATAATCGCACACATAGTGCCATAGTAAATC
80613786 GCACACATAGTGC
1 GCACACATAGTGC
80613799 ATTTGAGATT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
48 53 0.93
49 4 0.07
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (48 bp):
GCACACATAGTGCTTAGTATAATCGCACACATAGTGCCATAGTAAATC
Found at i:80615405 original size:8 final size:8
Alignment explanation
Indices: 80615392--80615438 Score: 60
Period size: 8 Copynumber: 5.9 Consensus size: 8
80615382 ATGTATAGGA
80615392 AAAAGCCG
1 AAAAGCCG
80615400 AAAAGCC-
1 AAAAGCCG
80615407 AAAATGCCG
1 AAAA-GCCG
80615416 AAAAGCCG
1 AAAAGCCG
* *
80615424 AAATGACG
1 AAAAGCCG
80615432 AAAAGCC
1 AAAAGCC
80615439 TAAAGTTTGG
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
7 4 0.12
8 25 0.76
9 4 0.12
ACGTcount: A:0.51, C:0.23, G:0.21, T:0.04
Consensus pattern (8 bp):
AAAAGCCG
Found at i:80615415 original size:16 final size:16
Alignment explanation
Indices: 80615391--80615438 Score: 69
Period size: 16 Copynumber: 3.0 Consensus size: 16
80615381 TATGTATAGG
*
80615391 AAAAAGCCGAAAAGCC
1 AAAATGCCGAAAAGCC
80615407 AAAATGCCGAAAAGCC
1 AAAATGCCGAAAAGCC
* *
80615423 GAAATGACGAAAAGCC
1 AAAATGCCGAAAAGCC
80615439 TAAAGTTTGG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 29 1.00
ACGTcount: A:0.52, C:0.23, G:0.21, T:0.04
Consensus pattern (16 bp):
AAAATGCCGAAAAGCC
Found at i:80615723 original size:29 final size:29
Alignment explanation
Indices: 80615681--80615777 Score: 99
Period size: 29 Copynumber: 3.4 Consensus size: 29
80615671 CCTAACGGGA
* * *
80615681 CATATAAATGTGATTTGGGAATAATGGGC
1 CATATACAGGTGATTTGGGCATAATGGGC
*
80615710 CATATACAGGTGATTTGGGCCTAATGGGC
1 CATATACAGGTGATTTGGGCATAATGGGC
** *
80615739 CATATGA-ATATGA-TTGGGCTTAATGGGC
1 CATAT-ACAGGTGATTTGGGCATAATGGGC
*
80615767 CAAATACAGGT
1 CATATACAGGT
80615778 ATGTGAAATT
Statistics
Matches: 56, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
27 1 0.02
28 20 0.36
29 34 0.61
30 1 0.02
ACGTcount: A:0.31, C:0.12, G:0.28, T:0.29
Consensus pattern (29 bp):
CATATACAGGTGATTTGGGCATAATGGGC
Found at i:80615764 original size:28 final size:29
Alignment explanation
Indices: 80615669--80615775 Score: 94
Period size: 29 Copynumber: 3.7 Consensus size: 29
80615659 AATGTGACTA
* * *
80615669 GGCCTAACGGGACATATAAATG-TGATTTG
1 GGCCTAATGGGCCATATACA-GATGATTTG
** *
80615698 GGAATAATGGGCCATATACAGGTGATTTG
1 GGCCTAATGGGCCATATACAGATGATTTG
*
80615727 GGCCTAATGGGCCATATGA-ATATGA-TTG
1 GGCCTAATGGGCCATAT-ACAGATGATTTG
* *
80615755 GGCTTAATGGGCCAAATACAG
1 GGCCTAATGGGCCATATACAG
80615776 GTATGTGAAA
Statistics
Matches: 63, Mismatches: 12, Indels: 7
0.77 0.15 0.09
Matches are distributed among these distances:
27 1 0.02
28 20 0.32
29 41 0.65
30 1 0.02
ACGTcount: A:0.31, C:0.14, G:0.29, T:0.26
Consensus pattern (29 bp):
GGCCTAATGGGCCATATACAGATGATTTG
Found at i:80615774 original size:57 final size:58
Alignment explanation
Indices: 80615669--80615777 Score: 148
Period size: 57 Copynumber: 1.9 Consensus size: 58
80615659 AATGTGACTA
* *
80615669 GGCCTAACGGGACATATAAATGTGATTTGGGAATAATGGGCCATATACAGGTGATTTG
1 GGCCTAACGGGACATATAAATATGATTTGGGAATAATGGGCCAAATACAGGTGATTTG
* * * **
80615727 GGCCTAATGGGCCATATGAATATGA-TTGGGCTTAATGGGCCAAATACAGGT
1 GGCCTAACGGGACATATAAATATGATTTGGGAATAATGGGCCAAATACAGGT
80615778 ATGTGAAATT
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
57 23 0.52
58 21 0.48
ACGTcount: A:0.30, C:0.14, G:0.29, T:0.27
Consensus pattern (58 bp):
GGCCTAACGGGACATATAAATATGATTTGGGAATAATGGGCCAAATACAGGTGATTTG
Found at i:80619479 original size:20 final size:20
Alignment explanation
Indices: 80619454--80619491 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
80619444 ACTTTCAACT
80619454 TACTATAATCTTTCACAAAA
1 TACTATAATCTTTCACAAAA
*
80619474 TACTATAGTCTTTCACAA
1 TACTATAATCTTTCACAA
80619492 CTTAAACATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.39, C:0.21, G:0.03, T:0.37
Consensus pattern (20 bp):
TACTATAATCTTTCACAAAA
Found at i:80619690 original size:42 final size:42
Alignment explanation
Indices: 80619571--80619699 Score: 161
Period size: 42 Copynumber: 3.0 Consensus size: 42
80619561 CACATAGCAC
* * *
80619571 CATACCAATGCCATATCCCAGATATGGTCTTACATGAGATCT
1 CATATCAATGCCATATCCCAGATATGGTCTTACACGAAATCT
* * * *
80619613 CATTTCAATGCCAATAGCCTAGCTATGGTCTTACACGAAATCT
1 CATATCAATGCC-ATATCCCAGATATGGTCTTACACGAAATCT
*
80619656 CATATCGATGCCATATCCCAGATATGGTCTTACAC-ATAATCT
1 CATATCAATGCCATATCCCAGATATGGTCTTACACGA-AATCT
80619698 CA
1 CA
80619700 ACTAACCCTA
Statistics
Matches: 73, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
41 1 0.01
42 37 0.51
43 35 0.48
ACGTcount: A:0.31, C:0.26, G:0.13, T:0.29
Consensus pattern (42 bp):
CATATCAATGCCATATCCCAGATATGGTCTTACACGAAATCT
Done.