Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 255 of 318
Found at i:80634464 original size:40 final size:40
Alignment explanation
Indices: 80634409--80634627 Score: 372
Period size: 40 Copynumber: 5.5 Consensus size: 40
80634399 TTCGGATGAC
80634409 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
80634449 ATCCGGGCTAAGTCCCGAAGGCA-TTGTGCTAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
*
80634488 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
*
80634528 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
*
80634568 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTG-CTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACTAT
*
80634608 ATCC-GGCTAAATCCCGAAGG
1 ATCCGGGCTAAGTCCCGAAGG
80634628 TACTTGGGTT
Statistics
Matches: 173, Mismatches: 4, Indels: 5
0.95 0.02 0.03
Matches are distributed among these distances:
39 54 0.31
40 117 0.68
41 2 0.01
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
Found at i:80634540 original size:79 final size:80
Alignment explanation
Indices: 80634409--80634627 Score: 372
Period size: 79 Copynumber: 2.8 Consensus size: 80
80634399 TTCGGATGAC
*
80634409 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA-T
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACTATATCCGGGCTAAGTCCCGAAGGCATT
80634473 TGTGCTAGTGACTAT
66 TGTGCTAGTGACTAT
80634488 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACTATATCCGGGCTAAGTCCCGAAGGCATT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACTATATCCGGGCTAAGTCCCGAAGGCATT
*
80634553 TGTGCTATTGACTAT
66 TGTGCTAGTGACTAT
* *
80634568 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCCGAAGG
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGACTATATCCGGGCTAAGTCCCGAAGG
80634628 TACTTGGGTT
Statistics
Matches: 134, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
79 77 0.57
80 54 0.40
81 3 0.02
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACTATATCCGGGCTAAGTCCCGAAGGCATT
TGTGCTAGTGACTAT
Found at i:80634623 original size:119 final size:119
Alignment explanation
Indices: 80634409--80634627 Score: 379
Period size: 119 Copynumber: 1.8 Consensus size: 119
80634399 TTCGGATGAC
80634409 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATT
* *
80634474 GTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACTAT
66 GTGCGAGTGACTATATCCGGGCTAAATCCCGAAGGCATTTGTGCTATTGACTAT
*
80634528 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACTATATCCGGGCTAAGTCCCGAAGGCATT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA-T
80634593 TGTGCGAGTTG-CTATATCC-GGCTAAATCCCGAAGG
65 TGTGCGAG-TGACTATATCCGGGCTAAATCCCGAAGG
80634628 TACTTGGGTT
Statistics
Matches: 95, Mismatches: 3, Indels: 4
0.93 0.03 0.04
Matches are distributed among these distances:
119 77 0.81
120 16 0.17
121 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (119 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATT
GTGCGAGTGACTATATCCGGGCTAAATCCCGAAGGCATTTGTGCTATTGACTAT
Found at i:80642969 original size:39 final size:40
Alignment explanation
Indices: 80642891--80643108 Score: 363
Period size: 40 Copynumber: 5.5 Consensus size: 40
80642881 TTCGGATGAC
80642891 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
80642931 ATCCGGGCTAAGTCCCGAAGGCA-TTGTGCTAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
*
80642970 ATCCGGGCTAAG-CCCGAAGGCATTTGTGCTATTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
*
80643009 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
*
80643049 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTG-CTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACTAT
*
80643089 ATCC-GGCTAAATCCCGAAGG
1 ATCCGGGCTAAGTCCCGAAGG
80643109 TACTTGGGTT
Statistics
Matches: 171, Mismatches: 4, Indels: 7
0.94 0.02 0.04
Matches are distributed among these distances:
38 10 0.06
39 70 0.41
40 89 0.52
41 2 0.01
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
Found at i:80646394 original size:46 final size:46
Alignment explanation
Indices: 80646344--80646472 Score: 204
Period size: 46 Copynumber: 2.8 Consensus size: 46
80646334 TGGTTGAGCA
80646344 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* *
80646390 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * *
80646436 CCCGAGCTCGTTGAGTTGAGTTCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
80646473 GCGGGTTACA
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 76 1.00
ACGTcount: A:0.20, C:0.21, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:80648580 original size:12 final size:12
Alignment explanation
Indices: 80648563--80648587 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
80648553 AATAGTAAAA
80648563 TATCATTCAACT
1 TATCATTCAACT
80648575 TATCATTCAACT
1 TATCATTCAACT
80648587 T
1 T
80648588 CCAAAGCCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.24, G:0.00, T:0.44
Consensus pattern (12 bp):
TATCATTCAACT
Found at i:80654310 original size:29 final size:29
Alignment explanation
Indices: 80654271--80654349 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
80654261 CTTAATAATC
*
80654271 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
80654301 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
80654330 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
80654350 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:80655483 original size:17 final size:18
Alignment explanation
Indices: 80655446--80655483 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
80655436 CACTTTTTTT
80655446 TTCCTTTGTTTTCATCATA
1 TTCCTTTGTTTTCAT-ATA
*
80655465 TTCCTTTTTTTTCAT-TA
1 TTCCTTTGTTTTCATATA
80655482 TT
1 TT
80655484 TTATTCTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 4 0.22
19 14 0.78
ACGTcount: A:0.13, C:0.18, G:0.03, T:0.66
Consensus pattern (18 bp):
TTCCTTTGTTTTCATATA
Found at i:80662101 original size:29 final size:29
Alignment explanation
Indices: 80662062--80662140 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
80662052 CTTAATAATC
*
80662062 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
80662092 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
80662121 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
80662141 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:80663283 original size:17 final size:18
Alignment explanation
Indices: 80663246--80663283 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
80663236 CACTTTTTTT
80663246 TTCCTTTGTTTTCATCATA
1 TTCCTTTGTTTTCAT-ATA
*
80663265 TTCCTTTTTTTTCAT-TA
1 TTCCTTTGTTTTCATATA
80663282 TT
1 TT
80663284 TTATTCTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 4 0.22
19 14 0.78
ACGTcount: A:0.13, C:0.18, G:0.03, T:0.66
Consensus pattern (18 bp):
TTCCTTTGTTTTCATATA
Found at i:80666337 original size:37 final size:36
Alignment explanation
Indices: 80666288--80666362 Score: 132
Period size: 37 Copynumber: 2.1 Consensus size: 36
80666278 GTACGACAAT
*
80666288 TAATAAAAGATGAGTTTGCAAGAAAATTAAATATTG
1 TAATAAAAGATGAGTTTGCAAGAAAAGTAAATATTG
80666324 TAATAAAAAGATGAGTTTGCAAGAAAAGTAAATATTG
1 TAAT-AAAAGATGAGTTTGCAAGAAAAGTAAATATTG
80666361 TA
1 TA
80666363 CTCTAAGGAT
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
36 4 0.11
37 33 0.89
ACGTcount: A:0.51, C:0.03, G:0.17, T:0.29
Consensus pattern (36 bp):
TAATAAAAGATGAGTTTGCAAGAAAAGTAAATATTG
Found at i:80666350 original size:18 final size:18
Alignment explanation
Indices: 80666292--80666351 Score: 50
Period size: 18 Copynumber: 3.3 Consensus size: 18
80666282 GACAATTAAT
80666292 AAAAGATGAGTTTGCAAG
1 AAAAGATGAGTTTGCAAG
* * * * *
80666310 AAAA-TTAAATATTGTAATA
1 AAAAGATGAGT-TTGCAA-G
80666329 AAAAGATGAGTTTGCAAG
1 AAAAGATGAGTTTGCAAG
80666347 AAAAG
1 AAAAG
80666352 TAAATATTGT
Statistics
Matches: 29, Mismatches: 10, Indels: 6
0.64 0.22 0.13
Matches are distributed among these distances:
17 3 0.10
18 14 0.48
19 9 0.31
20 3 0.10
ACGTcount: A:0.52, C:0.03, G:0.20, T:0.25
Consensus pattern (18 bp):
AAAAGATGAGTTTGCAAG
Found at i:80666350 original size:19 final size:19
Alignment explanation
Indices: 80666292--80666350 Score: 52
Period size: 19 Copynumber: 3.2 Consensus size: 19
80666282 GACAATTAAT
80666292 AAAAGATGAGTTTGCAAGA
1 AAAAGATGAGTTTGCAAGA
* * *
80666311 AAATTAAAT-A--TTGTAATA
1 AAA--AGATGAGTTTGCAAGA
80666329 AAAAGATGAGTTTGCAAGA
1 AAAAGATGAGTTTGCAAGA
80666348 AAA
1 AAA
80666351 GTAAATATTG
Statistics
Matches: 29, Mismatches: 6, Indels: 10
0.64 0.13 0.22
Matches are distributed among these distances:
16 3 0.10
17 1 0.03
18 9 0.31
19 12 0.41
20 1 0.03
21 3 0.10
ACGTcount: A:0.53, C:0.03, G:0.19, T:0.25
Consensus pattern (19 bp):
AAAAGATGAGTTTGCAAGA
Found at i:80667171 original size:10 final size:10
Alignment explanation
Indices: 80667158--80667187 Score: 51
Period size: 11 Copynumber: 2.9 Consensus size: 10
80667148 AGTGTAGAGA
80667158 AAAACTAAAG
1 AAAACTAAAG
80667168 AAAACCTAAAG
1 AAAA-CTAAAG
80667179 AAAACTAAA
1 AAAACTAAA
80667188 CCTAAAACTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.70, C:0.13, G:0.07, T:0.10
Consensus pattern (10 bp):
AAAACTAAAG
Found at i:80669294 original size:27 final size:26
Alignment explanation
Indices: 80669248--80669300 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 26
80669238 AATCAACACC
** *
80669248 TAGGGGTATTTTTGTCATTTTCGCCTT
1 TAGGGGTATTTCGGTAATTTTC-CCTT
80669275 TAGGGGTATTTCGGTAATTTTCCCTT
1 TAGGGGTATTTCGGTAATTTTCCCTT
80669301 AATTACAGTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 4 0.17
27 19 0.83
ACGTcount: A:0.13, C:0.15, G:0.23, T:0.49
Consensus pattern (26 bp):
TAGGGGTATTTCGGTAATTTTCCCTT
Found at i:80669769 original size:18 final size:19
Alignment explanation
Indices: 80669746--80669783 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
80669736 ATGGGCCCAA
80669746 TAGCCCA-TCAGGCCCATT
1 TAGCCCATTCAGGCCCATT
*
80669764 TAGCCCATTCCGGCCCATT
1 TAGCCCATTCAGGCCCATT
80669783 T
1 T
80669784 GGCCAATTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.18, C:0.39, G:0.16, T:0.26
Consensus pattern (19 bp):
TAGCCCATTCAGGCCCATT
Found at i:80669792 original size:19 final size:19
Alignment explanation
Indices: 80669756--80669792 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
80669746 TAGCCCATCA
*
80669756 GGCCCATTTAGCCCATTCC
1 GGCCCATTTAGCCAATTCC
*
80669775 GGCCCATTTGGCCAATTC
1 GGCCCATTTAGCCAATTC
80669793 TCAACCCAAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.16, C:0.38, G:0.19, T:0.27
Consensus pattern (19 bp):
GGCCCATTTAGCCAATTCC
Found at i:80669923 original size:23 final size:24
Alignment explanation
Indices: 80669896--80669957 Score: 63
Period size: 23 Copynumber: 2.6 Consensus size: 24
80669886 CAACTTTTGT
80669896 CTTTTTGGCATTTCGACTTGTCAG
1 CTTTTTGGCATTTCGACTTGTCAG
* * * * *
80669920 -TTTTCGACTTTTTGACTTTTCAG
1 CTTTTTGGCATTTCGACTTGTCAG
*
80669943 CTTTTTGGCACTTCG
1 CTTTTTGGCATTTCG
80669958 GCTTTTGCCG
Statistics
Matches: 27, Mismatches: 10, Indels: 2
0.69 0.26 0.05
Matches are distributed among these distances:
23 18 0.67
24 9 0.33
ACGTcount: A:0.11, C:0.21, G:0.18, T:0.50
Consensus pattern (24 bp):
CTTTTTGGCATTTCGACTTGTCAG
Found at i:80673028 original size:70 final size:71
Alignment explanation
Indices: 80672913--80673075 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
80672903 GAGATGTATC
*
80672913 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTGGGTCG-ATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
80672977 AGGACA
66 AGGACA
80672983 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
80673048 AGGACA
66 AGGACA
80673054 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
80673076 AGACAAATCG
Statistics
Matches: 91, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
70 45 0.49
71 46 0.51
ACGTcount: A:0.35, C:0.17, G:0.29, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:80678286 original size:33 final size:33
Alignment explanation
Indices: 80678249--80678315 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
80678239 AATGTTGATC
80678249 ATGCAAAAGAAATGTGAAAGTAATGAATTCATG
1 ATGCAAAAGAAATGTGAAAGTAATGAATTCATG
80678282 ATGCAAAAGAAATGTGAAAGTAATGAATTCATG
1 ATGCAAAAGAAATGTGAAAGTAATGAATTCATG
80678315 A
1 A
80678316 CTATGTATGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.49, C:0.06, G:0.21, T:0.24
Consensus pattern (33 bp):
ATGCAAAAGAAATGTGAAAGTAATGAATTCATG
Found at i:80679814 original size:36 final size:36
Alignment explanation
Indices: 80679767--80679839 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
80679757 TTACAGCAAG
80679767 ATCGTTCATTCCCGAATCACGTACCTTCGGAATTTA
1 ATCGTTCATTCCCGAATCACGTACCTTCGGAATTTA
80679803 ATCGTTCATTCCCGAATCACGTACCTTCGGAATTTA
1 ATCGTTCATTCCCGAATCACGTACCTTCGGAATTTA
80679839 A
1 A
80679840 CCGGATATAG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.26, C:0.27, G:0.14, T:0.33
Consensus pattern (36 bp):
ATCGTTCATTCCCGAATCACGTACCTTCGGAATTTA
Found at i:80680043 original size:119 final size:120
Alignment explanation
Indices: 80679861--80680083 Score: 301
Period size: 119 Copynumber: 1.9 Consensus size: 120
80679851 TACTCGTTCA
*
80679861 AATGCCTTCGGGACATAGCCCGGTTATAGCAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
80679926 TTAGT-ACCTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTCACCTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * **
80679981 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGCAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * *
80680043 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTCACCTAGCACAAAGCCTTCGGGACTTAACCCGGA
80680084 CATCATTCGA
Statistics
Matches: 90, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
118 4 0.04
119 64 0.71
120 22 0.24
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTCACCTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:80680083 original size:40 final size:40
Alignment explanation
Indices: 80679840--80680083 Score: 282
Period size: 40 Copynumber: 6.1 Consensus size: 40
80679830 CGGAATTTAA
** *
80679840 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
80679880 CCGGTTATAGCAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
80679920 CCGGATTTAGTACCTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
80679960 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
80679999 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
80680039 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
80680079 CCGGA
1 CCGGA
80680084 CATCATTCGA
Statistics
Matches: 177, Mismatches: 20, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
38 2 0.01
39 32 0.18
40 131 0.74
41 12 0.07
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:80686629 original size:27 final size:27
Alignment explanation
Indices: 80686599--80686688 Score: 90
Period size: 27 Copynumber: 3.3 Consensus size: 27
80686589 TGGGTTCGCT
* **
80686599 AGTTCGTTTGGCGCGCTAGGGTTTACC
1 AGTTGGTTTGGCAAGCTAGGGTTTACC
* *
80686626 AGTTGGTTTGGCAAGCTGGGGTTTGCC
1 AGTTGGTTTGGCAAGCTAGGGTTTACC
** * **
80686653 AGTTGGTTTGGTGAGCTAAGGTTCGCC
1 AGTTGGTTTGGCAAGCTAGGGTTTACC
80686680 AGTTGGTTT
1 AGTTGGTTT
80686689 ATCAAACTAG
Statistics
Matches: 53, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 53 1.00
ACGTcount: A:0.12, C:0.16, G:0.37, T:0.36
Consensus pattern (27 bp):
AGTTGGTTTGGCAAGCTAGGGTTTACC
Found at i:80688191 original size:29 final size:29
Alignment explanation
Indices: 80688183--80688294 Score: 197
Period size: 29 Copynumber: 3.9 Consensus size: 29
80688173 GTGTCGTATT
** *
80688183 TTTCCAGCTTGCACACTTAGTGCCAAATA
1 TTTCCAGCACGCACACTTAGTGCCATATA
80688212 TTTCCAGCACGCACACTTAGTGCCATATA
1 TTTCCAGCACGCACACTTAGTGCCATATA
80688241 TTTCCAGCACGCACACTTAGTGCCATATA
1 TTTCCAGCACGCACACTTAGTGCCATATA
80688270 TTTCCAGCACGCACACTTAGTGCCA
1 TTTCCAGCACGCACACTTAGTGCCA
80688295 ATCTCGTCAC
Statistics
Matches: 80, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 80 1.00
ACGTcount: A:0.27, C:0.31, G:0.14, T:0.28
Consensus pattern (29 bp):
TTTCCAGCACGCACACTTAGTGCCATATA
Found at i:80688225 original size:58 final size:58
Alignment explanation
Indices: 80688163--80688294 Score: 174
Period size: 58 Copynumber: 2.3 Consensus size: 58
80688153 CCTCCGAGCT
* * * **
80688163 CGCACACCCAGTGTCGTATTTTTCCAGCTTGCACACTTAGTGCCAAATATTTCCAGCA
1 CGCACACCCAGTGCCATATATTTCCAGCACGCACACTTAGTGCCAAATATTTCCAGCA
** *
80688221 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACCCAGTGCCATATATTTCCAGCACGCACACTTAGTGCCAAATATTTCCAGCA
**
80688279 CGCACACTTAGTGCCA
1 CGCACACCCAGTGCCA
80688295 ATCTCGTCAC
Statistics
Matches: 66, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
58 66 1.00
ACGTcount: A:0.26, C:0.32, G:0.15, T:0.27
Consensus pattern (58 bp):
CGCACACCCAGTGCCATATATTTCCAGCACGCACACTTAGTGCCAAATATTTCCAGCA
Found at i:80696374 original size:29 final size:29
Alignment explanation
Indices: 80696333--80696461 Score: 183
Period size: 29 Copynumber: 4.6 Consensus size: 29
80696323 ACCTCGAGCT
** * * *
80696333 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
80696362 TGCACACTTAGTG-C--ATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
80696388 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
80696417 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
80696446 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
80696462 ATCTCGTCAC
Statistics
Matches: 91, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
26 22 0.24
27 1 0.01
28 1 0.01
29 67 0.74
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:80696392 original size:55 final size:57
Alignment explanation
Indices: 80696333--80696461 Score: 163
Period size: 55 Copynumber: 2.3 Consensus size: 57
80696323 ACCTCGAGCT
* * **
80696333 CGCACACCCAGTGCCGTATTTTTCCAGCTTGCACACTTAGTG-C-ATATTTCCAGCA
1 CGCACACCCAGTGCCATATATTTCCAGCACGCACACTTAGTGCCAATATTTCCAGCA
**
80696388 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACCCAGTGCCATATATTTCCAGCACGCACACTTAGTGCCA-ATATTTCCAGCA
**
80696446 CGCACACTTAGTGCCA
1 CGCACACCCAGTGCCA
80696462 ATCTCGTCAC
Statistics
Matches: 65, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
55 36 0.55
56 1 0.02
58 28 0.43
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.27
Consensus pattern (57 bp):
CGCACACCCAGTGCCATATATTTCCAGCACGCACACTTAGTGCCAATATTTCCAGCA
Found at i:80703954 original size:40 final size:39
Alignment explanation
Indices: 80703789--80703972 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
80703779 AAATTGAATG
* * *
80703789 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
80703829 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
80703869 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
80703909 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
80703948 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
80703973 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:80703997 original size:80 final size:81
Alignment explanation
Indices: 80703829--80704017 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
80703819 GCTGGAAATT
* * * *
80703829 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
80703894 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
80703910 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
80703973 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
80703989 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
80704018 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:80706194 original size:6 final size:6
Alignment explanation
Indices: 80706183--80706247 Score: 55
Period size: 6 Copynumber: 11.0 Consensus size: 6
80706173 CTCTTGTACC
* * * *
80706183 TCTTTT TCTTTT TCTTTT TCTTTT TATTTT CCCTTTT T-TCTTC ACTTTT
1 TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT -TCTTTT TCT-TTT TCTTTT
80706232 TC-TTT TC-TTT TCTTTT
1 TCTTTT TCTTTT TCTTTT
80706248 CTTAATTTTC
Statistics
Matches: 47, Mismatches: 8, Indels: 8
0.75 0.13 0.13
Matches are distributed among these distances:
5 11 0.23
6 31 0.66
7 5 0.11
ACGTcount: A:0.03, C:0.20, G:0.00, T:0.77
Consensus pattern (6 bp):
TCTTTT
Found at i:80706266 original size:36 final size:35
Alignment explanation
Indices: 80706183--80706276 Score: 86
Period size: 36 Copynumber: 2.6 Consensus size: 35
80706173 CTCTTGTACC
*
80706183 TCTTTTTCTTTTTCTTTTTCTTTTTATTTTCCCTTTTT
1 TCTTTTACTTTTTC-TTTTC-TTTTATTTT-CCTTTTT
* *
80706221 TC-TTCACTTTTTCTTTTCTTTTCTTTT-CTTAATTT
1 TCTTTTACTTTTTCTTTTCTTTTATTTTCCTT--TTT
80706256 TCTTTTACTTTTT-TTTGTCTT
1 TCTTTTACTTTTTCTTT-TCTT
80706277 ACTTCTACAC
Statistics
Matches: 48, Mismatches: 4, Indels: 10
0.77 0.06 0.16
Matches are distributed among these distances:
33 3 0.06
35 16 0.33
36 18 0.38
37 9 0.19
38 2 0.04
ACGTcount: A:0.05, C:0.18, G:0.01, T:0.76
Consensus pattern (35 bp):
TCTTTTACTTTTTCTTTTCTTTTATTTTCCTTTTT
Found at i:80706911 original size:227 final size:227
Alignment explanation
Indices: 80706452--80707261 Score: 1010
Period size: 227 Copynumber: 3.6 Consensus size: 227
80706442 GTTTTCTCTT
* * **
80706452 AAGCTTGTTTGGCTTCCTAGAAAATCTGAGTTTTCTTCCTTCCCTCTTTTTTTTTTCTTTTTTTA
1 AAGCTTGTTTGGCTTCCTAGAAAATCTGGGTTTTCTTCCTTCCCTC---TTTTTTTCTTTTCTCG
* * ** * * *
80706517 ATCTTATTTTTTTTCTCACCAGCCAAACAGGCTTTCACTAGTTCTCTTTTTCTTTTTGTTATGCA
63 TTC-T-TTTTTTTCCTTGCTAGCCAAACAGGCTTTCACCAGTCCTCTTTTTCTTTTTGTTATGCA
* * * ** *
80706582 TCATCATATTTTTTAGTTCTTTGGGAAAGAAAAGAAACCTTTTTCATCAACTAAAAACTCAAGAG
126 TCATCATACTTTTTAGTTC-TTAGAAAAGAAAAG-AACCTCCTTCATCAACTGAAAACTCAAGAG
*
80706647 AAATCATGAATGAGATGGAAAAGAACATGCTCTTTTAGG
189 AAATCATGAATGAGATGGAAAAGAACAAGCTCTTTTAGG
*
80706686 AAGCTTGTTTGGCTTCCTA-ATAAATCTGGGTTTTATTCCTTCCCTCGTTTTTTTCTTTTCTCGT
1 AAGCTTGTTTGGCTTCCTAGA-AAATCTGGGTTTTCTTCCTTCCCTC-TTTTTTTCTTTTCTCGT
*
80706750 TCTTTTTTTTCCTTGCTAGCCAAACAGGCTTTCACCAATCCTCTTTTTCTTTTTGTTATGCATCA
64 TCTTTTTTTTCCTTGCTAGCCAAACAGGCTTTCACCAGTCCTCTTTTTCTTTTTGTTATGCATCA
* **
80706815 TC-TA-TTTTTAGTTCTCTAGAAAAGAAAAGAACCTCCTTCATCAACTGAAAACTCAAAAGAAGC
129 TCATACTTTTTAGTTCT-TAGAAAAGAAAAGAACCTCCTTCATCAACTGAAAACTCAAGAGAAAT
80706878 CATGAATGAGATGGAAAAGAACAAGCTCTTTTAGG
193 CATGAATGAGATGGAAAAGAACAAGCTCTTTTAGG
* * * * *
80706913 CAGTTTGTTTGGCTTCCTAGAAAATCTGGATTTTCTTTCTTCCCTCTTTTTTTCTTTTCTTGTTC
1 AAGCTTGTTTGGCTTCCTAGAAAATCTGGGTTTTCTTCCTTCCCTCTTTTTTTCTTTTCTCGTTC
* * *
80706978 -TTTTTTTCCTTGCTAGCCAAATAAGCTTTCACCAGTCCTCTTTTTCTTTTTGTTTTGCATCATC
66 TTTTTTTTCCTTGCTAGCCAAACAGGCTTTCACCAGTCCTCTTTTTCTTTTTGTTATGCATCATC
* * * * *
80707042 GTACTTTTTAATTCTTTGAAAAAGAAAAAAAACC-CTCTTCAAT-AACTGAAAAATCAAGAGAAA
131 ATACTTTTTAGTTCTTAG-AAAAG-AAAAGAACCTC-CTTC-ATCAACTGAAAACTCAAGAGAAA
* * *
80707105 TTATGAATGAGATGGAAAAGAACAAGCCCTTCTAGG
192 TCATGAATGAGATGGAAAAGAACAAGCTCTTTTAGG
* * * *
80707141 AAGCTTGTTTGGCTTCTTAGAAAATTTGGGTTTTCTTCC-T---TCTTTTTTTCTTTTCTCCTTT
1 AAGCTTGTTTGGCTTCCTAGAAAATCTGGGTTTTCTTCCTTCCCTCTTTTTTTCTTTTCTCGTTC
* * *
80707202 TTTTTTTTCCTTCCTAGCCAAACAGGCTTTCACTAGTCCTCTTTTTATTTTTGTTATGCA
66 TTTTTTTTCCTTGCTAGCCAAACAGGCTTTCACCAGTCCTCTTTTTCTTTTTGTTATGCA
80707262 ATTAATAATG
Statistics
Matches: 508, Mismatches: 58, Indels: 29
0.85 0.10 0.05
Matches are distributed among these distances:
224 18 0.04
225 113 0.22
226 22 0.04
227 119 0.23
228 116 0.23
229 4 0.01
230 57 0.11
231 1 0.00
232 15 0.03
233 1 0.00
234 42 0.08
ACGTcount: A:0.25, C:0.20, G:0.13, T:0.43
Consensus pattern (227 bp):
AAGCTTGTTTGGCTTCCTAGAAAATCTGGGTTTTCTTCCTTCCCTCTTTTTTTCTTTTCTCGTTC
TTTTTTTTCCTTGCTAGCCAAACAGGCTTTCACCAGTCCTCTTTTTCTTTTTGTTATGCATCATC
ATACTTTTTAGTTCTTAGAAAAGAAAAGAACCTCCTTCATCAACTGAAAACTCAAGAGAAATCAT
GAATGAGATGGAAAAGAACAAGCTCTTTTAGG
Found at i:80707177 original size:228 final size:228
Alignment explanation
Indices: 80706452--80707261 Score: 984
Period size: 225 Copynumber: 3.6 Consensus size: 228
80706442 GTTTTCTCTT
* *
80706452 AAGCTTGTTTGGCTTCCTAGAAAATCTGAGTTTTCTTCCTTCCCTCTTTTTTTTTTCTTTTTTTA
1 AAGCTTGTTTGGCTTCCTAGAAAATCTGGGTTTTCTTCCTTCCCTC--TTTTTTTTC-TTTTCT-
* * * ** * * *
80706517 ATCTTATTTTTTTTCTCACCAGCCAAACAGGCTTTCACTAGTTCTCTTTTTCTTTTTGTTATGCA
62 ATGTTCTTTTTTTCCTTGCTAGCCAAACAGGCTTTCACCAGTCCTCTTTTTCTTTTTGTTATGCA
** * * *
80706582 TCATCATATTTTTTAGTTCTTTGGGAAAGAAAAGAAACCTTTTTCATCAACT-AAAAACTCAAGA
127 TCATC-TA-TTTTTAGTTCTTTGAAAAAGAAAAAAAACCCTCTTCATCAACTGAAAAA-TCAAGA
*
80706646 GAAATCATGAATGAGATGGAAAAGAACATGCTCTTTTAGG
189 GAAATCATGAATGAGATGGAAAAGAACAAGCTCTTTTAGG
* * *
80706686 AAGCTTGTTTGGCTTCCTA-ATAAATCTGGGTTTTATTCCTTCCCTCGTTTTTTTCTTTTCT-CG
1 AAGCTTGTTTGGCTTCCTAGA-AAATCTGGGTTTTCTTCCTTCCCTCTTTTTTTTCTTTTCTATG
*
80706749 TTCTTTTTTTTCCTTGCTAGCCAAACAGGCTTTCACCAATCCTCTTTTTCTTTTTGTTATGCATC
65 TTC-TTTTTTTCCTTGCTAGCCAAACAGGCTTTCACCAGTCCTCTTTTTCTTTTTGTTATGCATC
* * * *
80706814 ATCTATTTTTAGTTCTCT-AGAAAAG-AAAAGAA-CCTCCTTCATCAACTGAAAACTCAAAAGAA
129 ATCTATTTTTAGTTCTTTGA-AAAAGAAAAAAAACCCT-CTTCATCAACTGAAAAATCAAGAGAA
**
80706876 GCCATGAATGAGATGGAAAAGAACAAGCTCTTTTAGG
192 ATCATGAATGAGATGGAAAAGAACAAGCTCTTTTAGG
* * * *
80706913 CAGTTTGTTTGGCTTCCTAGAAAATCTGGATTTTCTTTCTTCCCTC-TTTTTTTCTTTTCT-TGT
1 AAGCTTGTTTGGCTTCCTAGAAAATCTGGGTTTTCTTCCTTCCCTCTTTTTTTTCTTTTCTATGT
* * *
80706976 TCTTTTTTTCCTTGCTAGCCAAATAAGCTTTCACCAGTCCTCTTTTTCTTTTTGTTTTGCATCAT
66 TCTTTTTTTCCTTGCTAGCCAAACAGGCTTTCACCAGTCCTCTTTTTCTTTTTGTTATGCATCAT
*
80707041 CGTACTTTTTAATTCTTTGAAAAAGAAAAAAAACCCTCTTCAAT-AACTGAAAAATCAAGAGAAA
131 C-TA-TTTTTAGTTCTTTGAAAAAGAAAAAAAACCCTCTTC-ATCAACTGAAAAATCAAGAGAAA
* * *
80707105 TTATGAATGAGATGGAAAAGAACAAGCCCTTCTAGG
193 TCATGAATGAGATGGAAAAGAACAAGCTCTTTTAGG
* * *
80707141 AAGCTTGTTTGGCTTCTTAGAAAATTTGGGTTTTCTTCC-T---TC-TTTTTTTCTTTTCTCCT-
1 AAGCTTGTTTGGCTTCCTAGAAAATCTGGGTTTTCTTCCTTCCCTCTTTTTTTTCTTTTCT-ATG
* * * *
80707200 TTTTTTTTTTCCTTCCTAGCCAAACAGGCTTTCACTAGTCCTCTTTTTATTTTTGTTATGCA
65 TTCTTTTTTTCCTTGCTAGCCAAACAGGCTTTCACCAGTCCTCTTTTTCTTTTTGTTATGCA
80707262 ATTAATAATG
Statistics
Matches: 503, Mismatches: 59, Indels: 37
0.84 0.10 0.06
Matches are distributed among these distances:
224 16 0.03
225 115 0.23
226 23 0.05
227 113 0.22
228 114 0.23
229 9 0.02
230 57 0.11
231 5 0.01
232 8 0.02
233 1 0.00
234 42 0.08
ACGTcount: A:0.25, C:0.20, G:0.13, T:0.43
Consensus pattern (228 bp):
AAGCTTGTTTGGCTTCCTAGAAAATCTGGGTTTTCTTCCTTCCCTCTTTTTTTTCTTTTCTATGT
TCTTTTTTTCCTTGCTAGCCAAACAGGCTTTCACCAGTCCTCTTTTTCTTTTTGTTATGCATCAT
CTATTTTTAGTTCTTTGAAAAAGAAAAAAAACCCTCTTCATCAACTGAAAAATCAAGAGAAATCA
TGAATGAGATGGAAAAGAACAAGCTCTTTTAGG
Found at i:80707208 original size:19 final size:20
Alignment explanation
Indices: 80707171--80707207 Score: 60
Period size: 18 Copynumber: 1.9 Consensus size: 20
80707161 AAAATTTGGG
80707171 TTTTCTTCCTTCTTTTTTTC
1 TTTTCTTCCTTCTTTTTTTC
80707191 TTTTC-TCCTT-TTTTTTT
1 TTTTCTTCCTTCTTTTTTT
80707208 TTCCTTCCTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 7 0.41
19 5 0.29
20 5 0.29
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (20 bp):
TTTTCTTCCTTCTTTTTTTC
Found at i:80707541 original size:18 final size:19
Alignment explanation
Indices: 80707505--80707543 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
80707495 AAGAAAGAAG
80707505 AAAAAAAGAAACAACAGGA
1 AAAAAAAGAAACAACAGGA
80707524 AAAAAAAGCAAA-AA-AGGA
1 AAAAAAAG-AAACAACAGGA
80707542 AA
1 AA
80707544 CTAATTACAC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 6 0.32
19 10 0.53
20 3 0.16
ACGTcount: A:0.77, C:0.08, G:0.15, T:0.00
Consensus pattern (19 bp):
AAAAAAAGAAACAACAGGA
Found at i:80708100 original size:13 final size:13
Alignment explanation
Indices: 80708084--80708110 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
80708074 TTTAACTCCC
80708084 TCTTTTTTCTTTT
1 TCTTTTTTCTTTT
80708097 TCTTTTTTCTTTT
1 TCTTTTTTCTTTT
80708110 T
1 T
80708111 TTCCTATAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (13 bp):
TCTTTTTTCTTTT
Found at i:80711755 original size:7 final size:8
Alignment explanation
Indices: 80711733--80711765 Score: 57
Period size: 8 Copynumber: 4.0 Consensus size: 8
80711723 AGTTAGATTG
80711733 TATTTTGTT
1 TATTTT-TT
80711742 TATTTTTT
1 TATTTTTT
80711750 TATTTTTT
1 TATTTTTT
80711758 TATTTTTT
1 TATTTTTT
80711766 CTGTTAAAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 18 0.75
9 6 0.25
ACGTcount: A:0.12, C:0.00, G:0.03, T:0.85
Consensus pattern (8 bp):
TATTTTTT
Found at i:80712460 original size:2 final size:2
Alignment explanation
Indices: 80712453--80712491 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
80712443 CATAGCACCA
80712453 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
80712492 TTTTGTATTG
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 35 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:80718574 original size:23 final size:23
Alignment explanation
Indices: 80718548--80718593 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
80718538 TAAAAATTAA
*
80718548 TATAAATTTAACGCAAATATACC
1 TATAAATTTAACACAAATATACC
80718571 TATAAATTTAACACAAATATACC
1 TATAAATTTAACACAAATATACC
80718594 AAAACATAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.50, C:0.17, G:0.02, T:0.30
Consensus pattern (23 bp):
TATAAATTTAACACAAATATACC
Found at i:80725470 original size:20 final size:18
Alignment explanation
Indices: 80725436--80725472 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
80725426 GCAACTCATA
80725436 ATTTCAACTATTTTACAC
1 ATTTCAACTATTTTACAC
80725454 ATTTACAACTCATTTTACA
1 ATTT-CAACT-ATTTTACA
80725473 ACTTAGCAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.35, C:0.22, G:0.00, T:0.43
Consensus pattern (18 bp):
ATTTCAACTATTTTACAC
Found at i:80727065 original size:29 final size:30
Alignment explanation
Indices: 80727016--80727077 Score: 108
Period size: 29 Copynumber: 2.1 Consensus size: 30
80727006 ACTTATTTTA
80727016 TTGTTAATTTTTTTATTATTTTAAAGGCAT
1 TTGTTAATTTTTTTATTATTTTAAAGGCAT
*
80727046 TTGTTAA-TTTTTTATTATTTTAGAGGCAT
1 TTGTTAATTTTTTTATTATTTTAAAGGCAT
80727075 TTG
1 TTG
80727078 CTTGTTAAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 24 0.77
30 7 0.23
ACGTcount: A:0.24, C:0.03, G:0.13, T:0.60
Consensus pattern (30 bp):
TTGTTAATTTTTTTATTATTTTAAAGGCAT
Found at i:80734156 original size:22 final size:23
Alignment explanation
Indices: 80734117--80734159 Score: 79
Period size: 22 Copynumber: 1.9 Consensus size: 23
80734107 CAGTTAGAGG
80734117 GTTACTTTTGTATCTACCACAAA
1 GTTACTTTTGTATCTACCACAAA
80734140 GTTACTTTTG-ATCTACCACA
1 GTTACTTTTGTATCTACCACA
80734160 GATTTAGTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.40
Consensus pattern (23 bp):
GTTACTTTTGTATCTACCACAAA
Found at i:80747197 original size:4 final size:4
Alignment explanation
Indices: 80747188--80747235 Score: 66
Period size: 4 Copynumber: 12.8 Consensus size: 4
80747178 CTACGTTTGA
*
80747188 AAAT AAAT AAAT AAAT AAAT -AAT AAA- AAAT AAA- AAAT ATAT AAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT
80747233 AAA
1 AAA
80747236 AGTATATATT
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
3 9 0.23
4 30 0.77
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:80747201 original size:8 final size:8
Alignment explanation
Indices: 80747188--80747235 Score: 66
Period size: 7 Copynumber: 6.4 Consensus size: 8
80747178 CTACGTTTGA
80747188 AAATAAAT
1 AAATAAAT
80747196 AAATAAAT
1 AAATAAAT
80747204 AAAT-AAT
1 AAATAAAT
80747211 AAA-AAAT
1 AAATAAAT
80747218 AAA-AAAT
1 AAATAAAT
*
80747225 ATATAAAT
1 AAATAAAT
80747233 AAA
1 AAA
80747236 AGTATATATT
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
7 18 0.50
8 18 0.50
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (8 bp):
AAATAAAT
Found at i:80747236 original size:14 final size:14
Alignment explanation
Indices: 80747192--80747243 Score: 52
Period size: 14 Copynumber: 3.6 Consensus size: 14
80747182 GTTTGAAAAT
*
80747192 AAATAAATAAATAA
1 AAATATATAAATAA
*
80747206 ATAATA-AAAAATAAA
1 A-AATATATAAAT-AA
80747221 AAATATATAAATAA
1 AAATATATAAATAA
*
80747235 AAGTATATA
1 AAATATATA
80747244 TTGGGCATGA
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
14 20 0.62
15 12 0.38
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.25
Consensus pattern (14 bp):
AAATATATAAATAA
Found at i:80747244 original size:16 final size:15
Alignment explanation
Indices: 80747192--80747236 Score: 56
Period size: 15 Copynumber: 3.1 Consensus size: 15
80747182 GTTTGAAAAT
*
80747192 AAATAAATAAATAAA
1 AAATATATAAATAAA
* *
80747207 TAATA-AAAAATAAA
1 AAATATATAAATAAA
80747221 AAATATATAAATAAA
1 AAATATATAAATAAA
80747236 A
1 A
80747237 GTATATATTG
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
14 12 0.48
15 13 0.52
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (15 bp):
AAATATATAAATAAA
Found at i:80747832 original size:13 final size:13
Alignment explanation
Indices: 80747814--80747856 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
80747804 AAATTTGAAT
80747814 TATTTAGTGATAA
1 TATTTAGTGATAA
80747827 TATTTAG-GAT--
1 TATTTAGTGATAA
*
80747837 TATTTAGTAATAA
1 TATTTAGTGATAA
80747850 TATTTAG
1 TATTTAG
80747857 GAAAAATCTA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
10 7 0.27
11 2 0.08
12 3 0.12
13 14 0.54
ACGTcount: A:0.37, C:0.00, G:0.14, T:0.49
Consensus pattern (13 bp):
TATTTAGTGATAA
Found at i:80747838 original size:23 final size:23
Alignment explanation
Indices: 80747812--80747858 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
80747802 TAAAATTTGA
*
80747812 ATTATTTAGTGATAATATTTAGG
1 ATTATTTAGTAATAATATTTAGG
80747835 ATTATTTAGTAATAATATTTAGG
1 ATTATTTAGTAATAATATTTAGG
80747858 A
1 A
80747859 AAAATCTAGC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.38, C:0.00, G:0.15, T:0.47
Consensus pattern (23 bp):
ATTATTTAGTAATAATATTTAGG
Found at i:80748779 original size:14 final size:14
Alignment explanation
Indices: 80748760--80748786 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
80748750 GAATCTGCTT
80748760 TATTTTATTTTTTG
1 TATTTTATTTTTTG
80748774 TATTTTATTTTTT
1 TATTTTATTTTTT
80748787 ATTTATCTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.00, G:0.04, T:0.81
Consensus pattern (14 bp):
TATTTTATTTTTTG
Found at i:80751412 original size:2 final size:2
Alignment explanation
Indices: 80751405--80751445 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
80751395 ATATAAATGA
80751405 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
80751446 AACAAATCCA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:80755921 original size:16 final size:16
Alignment explanation
Indices: 80755900--80755931 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
80755890 AATTGACCCA
*
80755900 AAAATTATATTTTTGC
1 AAAATTACATTTTTGC
80755916 AAAATTACATTTTTGC
1 AAAATTACATTTTTGC
80755932 CCCTAAACTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.38, C:0.09, G:0.06, T:0.47
Consensus pattern (16 bp):
AAAATTACATTTTTGC
Found at i:80760219 original size:29 final size:29
Alignment explanation
Indices: 80760180--80760258 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
80760170 CTTAATAATC
*
80760180 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
80760210 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
80760239 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
80760259 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:80761399 original size:17 final size:18
Alignment explanation
Indices: 80761362--80761399 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
80761352 ACTTTTTTTT
80761362 TTCCTTTGTTTTCATCATA
1 TTCCTTTGTTTTCAT-ATA
*
80761381 TTCCTTTTTTTTCAT-TA
1 TTCCTTTGTTTTCATATA
80761398 TT
1 TT
80761400 TTATTCTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 4 0.22
19 14 0.78
ACGTcount: A:0.13, C:0.18, G:0.03, T:0.66
Consensus pattern (18 bp):
TTCCTTTGTTTTCATATA
Found at i:80762083 original size:24 final size:24
Alignment explanation
Indices: 80762056--80762101 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
80762046 TTATCATCAT
*
80762056 TATGCATAAGTGGAATT-CATAATG
1 TATGCACAAGT-GAATTACATAATG
*
80762080 TATGTACAAGTGAATTACATAA
1 TATGCACAAGTGAATTACATAA
80762102 ATATGATCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 5 0.26
24 14 0.74
ACGTcount: A:0.41, C:0.09, G:0.17, T:0.33
Consensus pattern (24 bp):
TATGCACAAGTGAATTACATAATG
Found at i:80764929 original size:18 final size:17
Alignment explanation
Indices: 80764897--80764933 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
80764887 TTGAAGCTTG
*
80764897 AACTCAAATTTAAACTC
1 AACTCAAAATTAAACTC
80764914 AACTCAATAATTAAACTC
1 AACTCAA-AATTAAACTC
80764932 AA
1 AA
80764934 GGTTAATGGC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 7 0.39
18 11 0.61
ACGTcount: A:0.51, C:0.22, G:0.00, T:0.27
Consensus pattern (17 bp):
AACTCAAAATTAAACTC
Found at i:80768643 original size:22 final size:22
Alignment explanation
Indices: 80768616--80768657 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
80768606 GTTTAATATA
*
80768616 AATTTATATTATAATATAATTC
1 AATTTATAATATAATATAATTC
*
80768638 AATTTATAATATAATTTAAT
1 AATTTATAATATAATATAAT
80768658 AATAATTAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (22 bp):
AATTTATAATATAATATAATTC
Found at i:80771470 original size:10 final size:11
Alignment explanation
Indices: 80771429--80771470 Score: 56
Period size: 10 Copynumber: 4.2 Consensus size: 11
80771419 TGGTATTTAA
80771429 ATATATATA-T
1 ATATATATAGT
80771439 ATATATATA-T
1 ATATATATAGT
80771449 ATATATAT-GT
1 ATATATATAGT
80771459 ATATA-ATAGT
1 ATATATATAGT
80771469 AT
1 AT
80771471 TTAAGAATAT
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
9 2 0.07
10 28 0.93
ACGTcount: A:0.48, C:0.00, G:0.05, T:0.48
Consensus pattern (11 bp):
ATATATATAGT
Found at i:80771482 original size:2 final size:2
Alignment explanation
Indices: 80771429--80771463 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
80771419 TGGTATTTAA
*
80771429 AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
80771464 ATAGTATTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
AT
Found at i:80772050 original size:21 final size:20
Alignment explanation
Indices: 80772025--80772076 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
80772015 AGGGTTTCTT
80772025 GGTTTTTTTTTGGGGGGGTTA
1 GGTTTTTTTTT-GGGGGGTTA
***
80772046 GGTTTTTTTTTTTTGGGTTA
1 GGTTTTTTTTTGGGGGGTTA
80772066 GGTTTTTTTTT
1 GGTTTTTTTTT
80772077 TTTGGGAGGG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 17 0.61
21 11 0.39
ACGTcount: A:0.04, C:0.00, G:0.31, T:0.65
Consensus pattern (20 bp):
GGTTTTTTTTTGGGGGGTTA
Found at i:80772076 original size:20 final size:20
Alignment explanation
Indices: 80772040--80772082 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
80772030 TTTTTTGGGG
80772040 GGGTTAGGTTTTTTTTTTTT
1 GGGTTAGGTTTTTTTTTTTT
80772060 GGGTTAGGTTTTTTTTTTTT
1 GGGTTAGGTTTTTTTTTTTT
80772080 GGG
1 GGG
80772083 AGGGCTTAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.05, C:0.00, G:0.30, T:0.65
Consensus pattern (20 bp):
GGGTTAGGTTTTTTTTTTTT
Found at i:80772940 original size:30 final size:30
Alignment explanation
Indices: 80772904--80772960 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
80772894 TTTGAAAAAT
80772904 AGAAATT-AAAAGACTCAACTCAACTCTCGC
1 AGAAATTAAAAAG-CTCAACTCAACTCTCGC
*
80772934 AGAAATTAAAAAGCTCAACTCACCTCT
1 AGAAATTAAAAAGCTCAACTCAACTCT
80772961 GGCAATATGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
30 20 0.80
31 5 0.20
ACGTcount: A:0.44, C:0.26, G:0.09, T:0.21
Consensus pattern (30 bp):
AGAAATTAAAAAGCTCAACTCAACTCTCGC
Found at i:80773080 original size:13 final size:13
Alignment explanation
Indices: 80773062--80773097 Score: 63
Period size: 14 Copynumber: 2.7 Consensus size: 13
80773052 ATGAGTTGAT
80773062 TTTTGAAAACAGA
1 TTTTGAAAACAGA
80773075 TTTTGAAAAACAGA
1 TTTTG-AAAACAGA
80773089 TTTTGAAAA
1 TTTTGAAAA
80773098 TACCTCGACA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 9 0.41
14 13 0.59
ACGTcount: A:0.47, C:0.06, G:0.14, T:0.33
Consensus pattern (13 bp):
TTTTGAAAACAGA
Found at i:80773123 original size:88 final size:87
Alignment explanation
Indices: 80772946--80773153 Score: 230
Period size: 88 Copynumber: 2.4 Consensus size: 87
80772936 AAATTAAAAA
* *
80772946 GCTCAACTCACCTCTGGCAATATGAGTTGAATTTTTTTGAAAA-A-AA---AAAAACAGAAATTG
1 GCTCAACTCACCTCTCGCAATATGAGTTG-A--TTTTTGAAAACAGAATTGAAAAACAGATATTG
* * *
80773006 AAAATAGCTC-AGCACGTGAGCCAAG
63 AAAATACCTCGA-CATGTGACCCAAG
* * *
80773031 GCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAACAGATTTTGAAAAACAGATTTTGAA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGA-ATTGAAAAACAGATATTGAA
*
80773096 AATACCTCGACATGTGACCCGAG
65 AATACCTCGACATGTGACCCAAG
* *
80773119 GCTCAACTCACATCTCGCAATGTGAGTTGATTTTT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
80773154 TTGAAAAATA
Statistics
Matches: 105, Mismatches: 11, Indels: 11
0.83 0.09 0.09
Matches are distributed among these distances:
82 10 0.10
83 1 0.01
84 2 0.02
85 27 0.26
88 64 0.61
89 1 0.01
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.28
Consensus pattern (87 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAATTGAAAAACAGATATTGAAA
ATACCTCGACATGTGACCCAAG
Found at i:80773270 original size:244 final size:249
Alignment explanation
Indices: 80772735--80773328 Score: 765
Period size: 257 Copynumber: 2.4 Consensus size: 249
80772725 AACAGACATT
*
80772735 AAAAACAGAAATTGAAAATAGCTCAGTGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
* ** * ** * ** *
80772800 TTGATTTTTTAAAACTTAACTTGAAAAGTAGATTTTGAAAATACCTCGATATGTGACTGGAGGTT
66 TTGATTTTTGAAAACAGAAATTGAAAAACAGATTTTGAAAATACCTCGACATGTGACCCGAGGCT
* *
80772865 CAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAGAAATTAAAAGACTCAACTCAACTC
131 CAACTCACATCTCGCAATATGAGTTGATTTTTGAAAAATAGAAATTAAAAGAATCAACTCAACTC
*
80772930 TCGCAGAAATTAAAAAGCTCAACTCACCTCTGGCAATATGAGTTGAATTTTTTTGAAAAAAA
196 TCGCAG-AATT-AAAAGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTG------A
* *
80772992 AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACTTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
**
80773057 TTGATTTTTGAAAACAGATTTTGAAAAACAGATTTTGAAAATACCTCGACATGTGACCCGAGGCT
66 TTGATTTTTGAAAACAGAAATTGAAAAACAGATTTTGAAAATACCTCGACATGTGACCCGAGGCT
* * *
80773122 CAACTCACATCTCGCAATGTGAGTTGATTTTTTTGAAAAATATAAATTGAAAA-AAT-ACCTC-A
131 CAACTCACATCTCGCAATATGAGTTGA--TTTTTGAAAAATAGAAATT-AAAAGAATCAACTCAA
* * * *
80773184 GTGT-G-TG-ATCT-GAAGCTCAACTCACCTCTCGCAATATGAGTTG-ATTTTTTTG-
193 CTCTCGCAGAAT-TAAAAGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGA
* *
80773236 AAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATAAG
1 AAAAACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
80773301 TTGATTTTTTGAAAACAGAAATTGAAAA
66 TTGA-TTTTTGAAAACAGAAATTGAAAA
80773329 TACCTCAACG
Statistics
Matches: 302, Mismatches: 30, Indels: 22
0.85 0.08 0.06
Matches are distributed among these distances:
244 65 0.22
245 21 0.07
251 9 0.03
252 30 0.10
253 2 0.01
254 1 0.00
255 1 0.00
256 1 0.00
257 144 0.48
258 4 0.01
259 20 0.07
260 4 0.01
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.28
Consensus pattern (249 bp):
AAAAACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTGAAAACAGAAATTGAAAAACAGATTTTGAAAATACCTCGACATGTGACCCGAGGCT
CAACTCACATCTCGCAATATGAGTTGATTTTTGAAAAATAGAAATTAAAAGAATCAACTCAACTC
TCGCAGAATTAAAAGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGA
Found at i:80773285 original size:77 final size:75
Alignment explanation
Indices: 80773117--80773400 Score: 326
Period size: 77 Copynumber: 3.7 Consensus size: 75
80773107 ATGTGACCCG
* * * *
80773117 AGGCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTTGAAAAATATAAATTGAAAAAATACCT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTG-AAAACAGAAATTG--AAAATACCT
* *
80773182 CAGTGTGTGATCTGA
62 CAG-GCGTGATCTCA
*
80773197 A-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATAGCTCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAA-ACAGAAATTGAAAATACCTCA
*
80773261 GCGCGTGAGC-CA
64 G-GCGTGATCTCA
* *
80773273 AGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA-A
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCAGG
**
80773337 CGTG-TCTTG
66 CGTGATCTCA
** *
80773346 AGGCTCAACTCATTTCTCGCAATATGAGTTGA-ATTTTGAAAACAGAAATTGAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAA
80773401 ATGGAAATTG
Statistics
Matches: 182, Mismatches: 19, Indels: 14
0.85 0.09 0.07
Matches are distributed among these distances:
72 23 0.13
73 33 0.18
75 20 0.11
76 12 0.07
77 46 0.25
78 3 0.02
79 44 0.24
80 1 0.01
ACGTcount: A:0.35, C:0.18, G:0.17, T:0.30
Consensus pattern (75 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCAGG
CGTGATCTCA
Found at i:80773402 original size:73 final size:73
Alignment explanation
Indices: 80773116--80773400 Score: 313
Period size: 79 Copynumber: 3.8 Consensus size: 73
80773106 CATGTGACCC
* * * *
80773116 GAGGCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTTGAAAAATATAAATTGAAAAAATACC
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTG-AAAACAGAAATTG--AAAATACC
* *
80773181 TCAGTGTGTGATCT
62 TCAGCGTGT-CT-T
* *
80773195 GAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATAGCTC
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAA-ACAGAAATTGAAAATACCTC
* *
80773260 AGCGCGTGAGC-C
64 A--GCGTG-TCTT
* * *
80773272 AAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCAA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCAG
80773337 CGTGTCTT
66 CGTGTCTT
** *
80773345 GAGGCTCAACTCATTTCTCGCAATATGAGTTGA-ATTTTGAAAACAGAAATTGAAAA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAA
80773401 ATGGAAATTG
Statistics
Matches: 179, Mismatches: 22, Indels: 17
0.82 0.10 0.08
Matches are distributed among these distances:
72 23 0.13
73 33 0.18
75 20 0.11
76 10 0.06
77 40 0.22
78 3 0.02
79 50 0.28
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (73 bp):
GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCAG
CGTGTCTT
Found at i:80773533 original size:83 final size:86
Alignment explanation
Indices: 80773318--80773814 Score: 421
Period size: 83 Copynumber: 5.8 Consensus size: 86
80773308 TTTGAAAACA
** * ** *
80773318 GAAATTGAAAATACCTCAACGTGT-CT-TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 GAAA-TGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
80773381 TTG-AAAACAGAAATTGAAAAATG
65 TTGAAAAACAGAAATTG--AAATG
*
80773404 GAAATTGAAAATACCTTGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 GAAA-TGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
* *
80773469 TTGAAAAATATAAATTG-AA-G
65 TTGAAAAACAGAAATTGAAATG
* * * * * *
80773489 TAAA-AAAAATACCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTTGCAATATGAGTTGATTTT
1 GAAATGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TT
*
80773553 TTTGAAAGACAGAAATTGAAAAATG
64 TTTGAAAAACAGAAATTG--AAATG
80773578 GAAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 GAAA-TGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
*** *
80773643 TT-TTGAA-AGACA--GAAAT-
65 TTGAAAAACAGAAATTGAAATG
* * * * ** **
80773660 ----TGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTCAATTTT
1 GAAATGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAG----TTGA
** **
80773721 TTTTTGAAAGGCAGAAATTGAAAAACA
62 TTTTTGAAAAACAGAAATTG--AAATG
* * * *
80773748 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATACGAGTTGATTT
1 GAAA-TGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
80773813 TT
65 TT
80773815 TTTTTTACAA
Statistics
Matches: 328, Mismatches: 56, Indels: 51
0.75 0.13 0.12
Matches are distributed among these distances:
77 47 0.14
81 7 0.02
83 58 0.18
85 23 0.07
86 23 0.07
87 8 0.02
88 40 0.12
89 27 0.08
91 51 0.16
93 44 0.13
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.29
Consensus pattern (86 bp):
GAAATGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
TGAAAAACAGAAATTGAAATG
Found at i:80773615 original size:91 final size:91
Alignment explanation
Indices: 80773494--80773665 Score: 308
Period size: 91 Copynumber: 1.9 Consensus size: 91
80773484 TGAAGTAAAA
* *
80773494 AAAATACCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTTTGAA
1 AAAATACCTCAGCGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
80773559 AGACAGAAATTGAAAAATGGAAATTG
66 AGACAGAAATTGAAAAATGGAAATTG
* *
80773585 AAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
1 AAAATACCTCAGCGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
80773650 AGACAGAAATTGAAAA
66 AGACAGAAATTGAAAA
80773666 TAGCTCAGCG
Statistics
Matches: 77, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
91 77 1.00
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.30
Consensus pattern (91 bp):
AAAATACCTCAGCGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
AGACAGAAATTGAAAAATGGAAATTG
Found at i:80773695 original size:77 final size:78
Alignment explanation
Indices: 80773578--80773744 Score: 237
Period size: 77 Copynumber: 2.1 Consensus size: 78
80773568 TTGAAAAATG
* * * ** **
80773578 GAAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TT
1 GAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTCAATTT
80773642 TTTTTGAAAGACA
66 TTTTTGAAAGACA
*
80773655 GAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTCAATTT
1 GAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTCAA-TT
*
80773720 TTTTTTGAAAGGCA
65 TTTTTTGAAAGACA
80773734 GAAATTGAAAA
1 GAAATTGAAAA
80773745 ACAGAAATTG
Statistics
Matches: 79, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
77 54 0.68
79 25 0.32
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (78 bp):
GAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTCAATTT
TTTTTGAAAGACA
Found at i:80773743 original size:14 final size:14
Alignment explanation
Indices: 80773732--80773758 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
80773722 TTTTGAAAGG
80773732 CAGAAATTGAAAAA
1 CAGAAATTGAAAAA
80773746 CAGAAATTGAAAA
1 CAGAAATTGAAAA
80773759 TACCTCGGCG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.63, C:0.07, G:0.15, T:0.15
Consensus pattern (14 bp):
CAGAAATTGAAAAA
Found at i:80773771 original size:170 final size:166
Alignment explanation
Indices: 80773233--80774065 Score: 922
Period size: 170 Copynumber: 4.9 Consensus size: 166
80773223 GTTGATTTTT
* * * * *
80773233 TTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCC-AAGGCTCAACTCACCTCTCGCAATA
1 TTGAAAAACAGAAATTGAAAATACCTCGGCGTGTGA-CCTGAGGCTCAACTCACCTCTCGCAATA
* * * **
80773297 TAAGTTGA-TTTTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTT
65 TGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGTC-CGAGGCTCAACTCACCT
80773361 CTCGCAATATGAGTTGAA-----TTTTGAAA-ACAGAAA
129 CTCGCAATATGAG-TGAATTTTTTTTTGAAAGACAGAAA
** * *
80773394 TTGAAAAATGGAAATTGAAAATACCTTGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
* * * * *
80773459 GAGTTGA--TTTTTGAAAAATATAAATTGAAGTAAAAAAAATACCTCAGTGTGTGATCTGAAGCT
66 GAGTTGATTTTTTTG-AAAACAGAAATT---G-----AAAATACCTCA--GCGTG-TCCGAGGCT
*
80773522 CAACTCACCTCTTGCAATATGAGTTG-A--TTTTTTTGAAAGACAGAAA
119 CAACTCACCTCTCGCAATATGAG-TGAATTTTTTTTTGAAAGACAGAAA
** *
80773568 TTGAAAAATGGAAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
* * *
80773633 GAGTTGATTTTTTTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCAC
66 GAGTTGATTTTTTTGAAA-ACAGAAATTGAAAATACCTCA--GCGTG-TCCGAGGCTCAACTCAC
* *
80773698 CTCTCGCAATATGAGTCAATTTTTTTTTGAAAGGCAGAAA
127 CTCTCGCAATATGAGTGAATTTTTTTTTGAAAGACAGAAA
* * *
80773738 TTGAAAAACAGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATAC
1 TTGAAAAACAGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
* * *
80773803 GAGTTGATTTTTTTTTTTACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCAC
66 GAGTTGA---TTTTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGTCC-GAGGCTCAACTCAC
* *
80773868 CTCTCGCAATATGAGTTGATTTTTTTTTTTGAAAGCCAGAAA
127 CTCTCGCAATATGAG-TGA-ATTTTTTTTTGAAAGACAGAAA
* *
80773910 TTTGAAAAAC-GAAAATTGAAAATACCTCGACGTGTGACCTGAGGCTCAACTCGCCTCTCGCAAT
1 -TTGAAAAACAG-AAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAAT
* * *
80773974 ACGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACC
64 ATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGTCC-GAGGCTCAACTCACC
80774039 TCTCGCAATATGAGTTG-ATTTTTTTTT
128 TCTCGCAATATGAG-TGAATTTTTTTTT
80774066 AAAATACCTC
Statistics
Matches: 591, Mismatches: 50, Indels: 55
0.85 0.07 0.08
Matches are distributed among these distances:
160 7 0.01
161 70 0.12
164 1 0.00
167 1 0.00
168 53 0.09
169 13 0.02
170 190 0.32
171 34 0.06
172 42 0.07
173 86 0.15
174 78 0.13
175 3 0.01
176 13 0.02
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29
Consensus pattern (166 bp):
TTGAAAAACAGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
GAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCGAGGCTCAACTCACCTCT
CGCAATATGAGTGAATTTTTTTTTGAAAGACAGAAA
Found at i:80773813 original size:93 final size:93
Alignment explanation
Indices: 80773645--80773818 Score: 242
Period size: 93 Copynumber: 1.9 Consensus size: 93
80773635 GTTGATTTTT
* * * *
80773645 TTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCGCTCGCAATAC
80773710 GAGTCAATTTTTTTTTGAAAGGCAGAAA
66 GAGTCAATTTTTTTTTGAAAGGCAGAAA
* * * *
80773738 TTGAAAAACAGAAATTGAAAATACCTCGGCGTGTGA-CCTGAGGCTCAACTCGCCGCTCGCAATA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCC-AAGGCTCAACTCACCGCTCGCAATA
**
80773802 CGAGTTGATTTTTTTTT
65 CGAGTCAATTTTTTTTT
80773819 TTACAACAGA
Statistics
Matches: 70, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
92 2 0.03
93 68 0.97
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (93 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCGCTCGCAATAC
GAGTCAATTTTTTTTTGAAAGGCAGAAA
Found at i:80773911 original size:79 final size:78
Alignment explanation
Indices: 80773744--80773897 Score: 247
Period size: 77 Copynumber: 2.0 Consensus size: 78
80773734 GAAATTGAAA
* *
80773744 AACAGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATACGAGTTG
1 AACAGAAATTGAAAATACCTCAGCGTGT-ACCTGAGGCTCAACTCACCGCTCGCAATACGAGTTG
80773809 ATTTTTTTTTTTAC
65 ATTTTTTTTTTTAC
* * *
80773823 AACAGAAATTGAAATTACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 AACAGAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCGCTCGCAATACGAGTTGA
80773887 TTTTTTTTTTT
66 TTTTTTTTTTT
80773898 GAAAGCCAGA
Statistics
Matches: 70, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
77 44 0.63
79 26 0.37
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (78 bp):
AACAGAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCGCTCGCAATACGAGTTGA
TTTTTTTTTTTAC
Found at i:80774065 original size:76 final size:75
Alignment explanation
Indices: 80773922--80774063 Score: 225
Period size: 74 Copynumber: 1.9 Consensus size: 75
80773912 TGAAAAACGA
*
80773922 AAATTGAAAATACCTCGACGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTT
1 AAATTGAAAATACCTCGACGTGT-ACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTT
80773987 TTTGACAACAG
65 TTTGACAACAG
* *
80773998 AAATTGAAATTACCTC-AGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 AAATTGAAAATACCTCGA-CGTGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTT
80774061 TTT
65 TTT
80774064 TTAAAATACC
Statistics
Matches: 62, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
74 41 0.66
75 1 0.02
76 20 0.32
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.31
Consensus pattern (75 bp):
AAATTGAAAATACCTCGACGTGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTT
TTGACAACAG
Found at i:80774176 original size:138 final size:136
Alignment explanation
Indices: 80773947--80774199 Score: 364
Period size: 138 Copynumber: 1.8 Consensus size: 136
80773937 CGACGTGTGA
* *** *
80773947 CCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTGACAACAGAAATTGAAATTACC
1 CCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTTGAAACAACAAAAATTGAAATTACC
* * *
80774012 TCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTAAAATACCTCA
66 TCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAATTGAATTTTTTTTAAAATACCTCA
80774077 GCGCGT
131 GCGCGT
* * *
80774083 CCTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTGAAACATATGAAAAATTGACAA-T
1 CCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTTGAAACA-A-CAAAAATTGA-AATT
*
80774147 ACCTCAGCGTGTCCCGGGGCTCAACTCACCTCTCGCAATATGAATTGAATTTT
63 ACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAATTGAATTTT
80774200 GAAATAAAAC
Statistics
Matches: 102, Mismatches: 12, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
136 41 0.40
137 1 0.01
138 58 0.57
139 2 0.02
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (136 bp):
CCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTTGAAACAACAAAAATTGAAATTACC
TCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAATTGAATTTTTTTTAAAATACCTCA
GCGCGT
Found at i:80782456 original size:12 final size:12
Alignment explanation
Indices: 80782436--80782471 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
80782426 TAGGATATGC
*
80782436 AATGTATGAATG
1 AATGCATGAATG
80782448 AATGCATGAATG
1 AATGCATGAATG
80782460 AATGCATGAATG
1 AATGCATGAATG
80782472 TCAAAATGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.42, C:0.06, G:0.25, T:0.28
Consensus pattern (12 bp):
AATGCATGAATG
Found at i:80784486 original size:2 final size:2
Alignment explanation
Indices: 80784441--80784469 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
80784431 GGTATTTAAA
80784441 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
80784470 GTATTTAAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:80784538 original size:39 final size:40
Alignment explanation
Indices: 80784438--80784538 Score: 109
Period size: 39 Copynumber: 2.6 Consensus size: 40
80784428 TATGGTATTT
* * *
80784438 AAAATATATATAT-ATATATATATATATATATAGTATTTA
1 AAAATATATACATAATATATATATATATATATAGCATTAA
* * * *
80784477 AGAATATATACATAAGAAATATATA-ACTA-ATGGCATTAA
1 AAAATATATACATAATATATATATATA-TATATAGCATTAA
80784516 AAAATATATACATAATATATATA
1 AAAATATATACATAATATATATA
80784539 AAATACCTAA
Statistics
Matches: 50, Mismatches: 10, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
39 39 0.78
40 11 0.22
ACGTcount: A:0.54, C:0.04, G:0.05, T:0.37
Consensus pattern (40 bp):
AAAATATATACATAATATATATATATATATATAGCATTAA
Found at i:80784644 original size:17 final size:18
Alignment explanation
Indices: 80784608--80784652 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 18
80784598 TAAGGGGGGC
**
80784608 CGGTCACCGGTCGATCGT
1 CGGTCACCGCCCGATCGT
80784626 CGGTCACCGCCCG-TCGT
1 CGGTCACCGCCCGATCGT
*
80784643 CGGCCACCGC
1 CGGTCACCGC
80784653 GGACCACCGC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
17 13 0.54
18 11 0.46
ACGTcount: A:0.09, C:0.44, G:0.31, T:0.16
Consensus pattern (18 bp):
CGGTCACCGCCCGATCGT
Found at i:80785070 original size:25 final size:24
Alignment explanation
Indices: 80785040--80785106 Score: 100
Period size: 27 Copynumber: 2.7 Consensus size: 24
80785030 TTTTTTGGGG
80785040 GGTTAGGTTTTTCTTTTTTTTTTT
1 GGTTAGGTTTTTCTTTTTTTTTTT
80785064 GGATTAGGTTTTTTCTTTTTTTTTTTT
1 GG-TTAGG-TTTTTC-TTTTTTTTTTT
80785091 GGTTAGGTTTTT-TTTT
1 GGTTAGGTTTTTCTTTT
80785107 GGGAGGGCTT
Statistics
Matches: 40, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
23 4 0.10
24 2 0.05
25 10 0.25
26 11 0.28
27 13 0.32
ACGTcount: A:0.06, C:0.03, G:0.18, T:0.73
Consensus pattern (24 bp):
GGTTAGGTTTTTCTTTTTTTTTTT
Found at i:80785076 original size:26 final size:26
Alignment explanation
Indices: 80785040--80785103 Score: 105
Period size: 26 Copynumber: 2.5 Consensus size: 26
80785030 TTTTTTGGGG
80785040 GGTTAGG-TTTTTC-TTTTTTTTTTT
1 GGTTAGGTTTTTTCTTTTTTTTTTTT
80785064 GGATTAGGTTTTTTCTTTTTTTTTTTT
1 GG-TTAGGTTTTTTCTTTTTTTTTTTT
80785091 GGTTAGGTTTTTT
1 GGTTAGGTTTTTT
80785104 TTTGGGAGGG
Statistics
Matches: 37, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
24 2 0.05
25 5 0.14
26 17 0.46
27 13 0.35
ACGTcount: A:0.06, C:0.03, G:0.19, T:0.72
Consensus pattern (26 bp):
GGTTAGGTTTTTTCTTTTTTTTTTTT
Found at i:80793660 original size:21 final size:21
Alignment explanation
Indices: 80793634--80793673 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
80793624 TTTTAAAAAT
80793634 AAAAAGATA-TAAAAATTTTAA
1 AAAAAG-TACTAAAAATTTTAA
*
80793655 AAAAAGTACTTAAAATTTT
1 AAAAAGTACTAAAAATTTT
80793674 TTAAAAATTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 2 0.12
21 15 0.88
ACGTcount: A:0.60, C:0.03, G:0.05, T:0.33
Consensus pattern (21 bp):
AAAAAGTACTAAAAATTTTAA
Found at i:80796869 original size:28 final size:28
Alignment explanation
Indices: 80796800--80796900 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
80796790 GACAAGATTG
* * * *
80796800 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
80796830 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
80796858 GCACTAAGTGTGCGAG-CTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
80796887 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
80796901 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:80796894 original size:29 final size:28
Alignment explanation
Indices: 80796829--80796900 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 28
80796819 AAAATTGTAC
*
80796829 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGATTATAT
80796857 AGCACTAAGTGTGCGAG-CTGAATGTATAT
1 AGCACTAAGTGTGCGAGTCTG-AT-TATAT
80796886 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
80796901 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGATTATAT
Found at i:80803159 original size:18 final size:18
Alignment explanation
Indices: 80803138--80803174 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
80803128 TCTTAAAAAG
*
80803138 AGTCAACTTTGATCACCA
1 AGTCAAATTTGATCACCA
80803156 AGTCAAATTTGATCACCA
1 AGTCAAATTTGATCACCA
80803174 A
1 A
80803175 CCTTTCAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.38, C:0.24, G:0.11, T:0.27
Consensus pattern (18 bp):
AGTCAAATTTGATCACCA
Found at i:80810191 original size:15 final size:15
Alignment explanation
Indices: 80810171--80810319 Score: 80
Period size: 15 Copynumber: 9.7 Consensus size: 15
80810161 AATCTCCCCA
80810171 ATTTTATTTTATTTT
1 ATTTTATTTTATTTT
80810186 ATTTTA-TTTATTTTT
1 ATTTTATTTTA-TTTT
*
80810201 AATTGTTATATTA-TTT
1 -ATT-TTATTTTATTTT
80810217 ATTCTTATTTTAATAATTT
1 ATT-TTATTTT-AT--TTT
80810236 A-TTTA-TTTA-TTT
1 ATTTTATTTTATTTT
* *
80810248 ATTATTCTTATATTTAT
1 ATT-TTATTTTATTT-T
*
80810265 ATTTTTAATTT-TTTT
1 A-TTTTATTTTATTTT
*
80810280 ATATTT-TTATATTTT
1 AT-TTTATTTTATTTT
*
80810295 A-TATATTTTAATTTT
1 ATTTTATTTT-ATTTT
80810310 ATTTTATTTT
1 ATTTTATTTT
80810320 GCTATTTTAG
Statistics
Matches: 102, Mismatches: 13, Indels: 37
0.67 0.09 0.24
Matches are distributed among these distances:
12 4 0.04
13 3 0.03
14 12 0.12
15 39 0.38
16 22 0.22
17 12 0.12
18 6 0.06
19 4 0.04
ACGTcount: A:0.26, C:0.01, G:0.01, T:0.72
Consensus pattern (15 bp):
ATTTTATTTTATTTT
Found at i:80810261 original size:8 final size:8
Alignment explanation
Indices: 80810260--80810303 Score: 61
Period size: 8 Copynumber: 5.2 Consensus size: 8
80810250 TATTCTTATA
80810260 TTTATATT
1 TTTATATT
*
80810268 TTTAATTTT
1 TTT-ATATT
80810277 TTTATATT
1 TTTATATT
80810285 TTTATATT
1 TTTATATT
80810293 TTATATATT
1 TT-TATATT
80810302 TT
1 TT
80810304 AATTTTATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
8 17 0.53
9 15 0.47
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (8 bp):
TTTATATT
Found at i:80810267 original size:25 final size:22
Alignment explanation
Indices: 80810237--80810314 Score: 77
Period size: 24 Copynumber: 3.4 Consensus size: 22
80810227 TAATAATTTA
80810237 TTTATTTATTTATTATTCTTATAT
1 TTTATTT-TTTATTATT-TTATAT
* *
80810261 TTATATTTTTAATTTTTTTATATT
1 TT-TATTTTTTATTATTTTATA-T
*
80810285 TTTATATTTTATATATTTTA-AT
1 TTTATTTTTTAT-TATTTTATAT
80810307 TTTATTTT
1 TTTATTTT
80810315 ATTTTGCTAT
Statistics
Matches: 45, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
22 8 0.18
23 14 0.31
24 18 0.40
25 5 0.11
ACGTcount: A:0.26, C:0.01, G:0.00, T:0.73
Consensus pattern (22 bp):
TTTATTTTTTATTATTTTATAT
Found at i:80810280 original size:17 final size:17
Alignment explanation
Indices: 80810260--80810319 Score: 72
Period size: 17 Copynumber: 3.6 Consensus size: 17
80810250 TATTCTTATA
80810260 TTTATATTTTTAATTTT
1 TTTATATTTTTAATTTT
*
80810277 TTTATATTTTT-A-TAT
1 TTTATATTTTTAATTTT
80810292 TTTATATATTTTAATTTT
1 TTTATAT-TTTTAATTTT
80810310 ATTT-TATTTT
1 -TTTATATTTT
80810320 GCTATTTTAG
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
15 9 0.24
16 5 0.14
17 15 0.41
18 5 0.14
19 3 0.08
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (17 bp):
TTTATATTTTTAATTTT
Found at i:80810300 original size:40 final size:39
Alignment explanation
Indices: 80810230--80810314 Score: 95
Period size: 40 Copynumber: 2.2 Consensus size: 39
80810220 CTTATTTTAA
* *
80810230 TAATTTATTTATTTATTTATTATTCTTATATTTATATTTT
1 TAATTTTTTTATTTATTTATTATTCTTATATTT-TAATTT
*
80810270 TAATTTTTTTATATT-TTTA-TATTTTATATATTTTAATTT
1 TAATTTTTTTAT-TTATTTATTATTCT-TATATTTTAATTT
80810309 T-ATTTT
1 TAATTTT
80810315 ATTTTGCTAT
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
38 5 0.12
39 11 0.28
40 22 0.55
41 2 0.05
ACGTcount: A:0.27, C:0.01, G:0.00, T:0.72
Consensus pattern (39 bp):
TAATTTTTTTATTTATTTATTATTCTTATATTTTAATTT
Found at i:80810309 original size:33 final size:32
Alignment explanation
Indices: 80810172--80810328 Score: 104
Period size: 33 Copynumber: 4.6 Consensus size: 32
80810162 ATCTCCCCAA
* *
80810172 TTTTAT-TTTATTTTATTTTATTTATTTTTAATTG
1 TTTTATATTT-TTATATTTTA--TATTTTTAATTT
* * *
80810206 TTATATTATTTATTCTTATTTTAATAATTTATTTATTT
1 TTTTA-TATTT-TT-ATATTTT-AT-ATTT-TTAATTT
* *
80810244 ATTTATTATTCTTATA-TTTATATTTTTAATTT
1 TTTTA-TATTTTTATATTTTATATTTTTAATTT
80810276 TTTTATATTTTTATATTTTATATATTTTAATTT
1 TTTTATATTTTTATATTTTATAT-TTTTAATTT
**
80810309 TATTT-TATTTTGCTATTTTA
1 T-TTTATATTTTTATATTTTA
80810329 GTTTTTTTCT
Statistics
Matches: 102, Mismatches: 12, Indels: 19
0.77 0.09 0.14
Matches are distributed among these distances:
31 9 0.09
32 17 0.17
33 27 0.26
34 9 0.09
35 4 0.04
36 9 0.09
37 13 0.13
38 14 0.14
ACGTcount: A:0.25, C:0.02, G:0.01, T:0.71
Consensus pattern (32 bp):
TTTTATATTTTTATATTTTATATTTTTAATTT
Found at i:80810325 original size:24 final size:24
Alignment explanation
Indices: 80810298--80810343 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
80810288 ATATTTTATA
80810298 TATTTTAATTTTATTT-TATTTTGC
1 TATTTTAATTTT-TTTCTATTTTGC
*
80810322 TATTTTAGTTTTTTTCTATTTT
1 TATTTTAATTTTTTTCTATTTT
80810344 TTCTTTCGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 3 0.15
24 17 0.85
ACGTcount: A:0.17, C:0.04, G:0.04, T:0.74
Consensus pattern (24 bp):
TATTTTAATTTTTTTCTATTTTGC
Found at i:80810449 original size:7 final size:6
Alignment explanation
Indices: 80810405--80810501 Score: 54
Period size: 6 Copynumber: 16.3 Consensus size: 6
80810395 TATAATTGAG
* * * * *
80810405 TTTATT ATT-TT TTTATT TTTATTT TTTATC TTTCTT TTTAAT TTTGTT
1 TTTATT TTTATT TTTATT TTTA-TT TTTATT TTTATT TTTATT TTTATT
* * * * * * * *
80810453 TTAATT GTT-TT ATTATT ATTATT ATTATT ATTATT ATTATT ATTATT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
80810500 TT
1 TT
80810502 CTCTTCAACT
Statistics
Matches: 73, Mismatches: 15, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
5 8 0.11
6 59 0.81
7 6 0.08
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.74
Consensus pattern (6 bp):
TTTATT
Found at i:80810470 original size:3 final size:3
Alignment explanation
Indices: 80810462--80810499 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
80810452 TTTAATTGTT
80810462 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
80810500 TTCTCTTCAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:80818080 original size:40 final size:40
Alignment explanation
Indices: 80818010--80818188 Score: 224
Period size: 40 Copynumber: 4.5 Consensus size: 40
80818000 CTACGAGAAA
* * *
80818010 TTTAA-CCC-GATATAATACCAGCACGAAGCCTGCGGGTC
1 TTTAAGCCCGGATACAATTCCAGTACGAAGCCTGCGGGTC
*
80818048 TTTAAGCCCGGATA-ACATTCCAGTA-TATAGCCTGCGGGTC
1 TTTAAGCCCGGATACA-ATTCCAGTACGA-AGCCTGCGGGTC
* *
80818088 TTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCAGGTC
1 TTTAAGCCCGGATACAATTCCAGTACGAAGCCTGCGGGTC
80818128 TTTAAGCCCGGATACAATTCCA-TCACGAAGCCTGCGGGTC
1 TTTAAGCCCGGATACAATTCCAGT-ACGAAGCCTGCGGGTC
* *
80818168 TTTAAGCCCAGATAAAATTCC
1 TTTAAGCCCGGATACAATTCC
80818189 TCAAGAATCA
Statistics
Matches: 124, Mismatches: 10, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
38 5 0.04
39 5 0.04
40 112 0.90
41 2 0.02
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (40 bp):
TTTAAGCCCGGATACAATTCCAGTACGAAGCCTGCGGGTC
Found at i:80818813 original size:2 final size:2
Alignment explanation
Indices: 80818802--80818839 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
80818792 AATTTAACTG
80818802 TA TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
80818840 CCGAATGTCT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 34 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:80822450 original size:43 final size:42
Alignment explanation
Indices: 80822295--80822456 Score: 148
Period size: 43 Copynumber: 3.8 Consensus size: 42
80822285 TGTGTTATCG
* * *
80822295 TGTAAGACCATGTCTGGGATGTTGGCATCG-ACTTATAATTTACA
1 TGTAAGACCACGTCTGGGACGTTGGCATCGTAC-T-TGA-TTACA
* * *
80822339 TGTAAGACTACGTCTGGGACGTTGGCATCGTACTTGATTTCG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGTACTTGATTACA
** *
80822381 TGTAAGACCTTGTCTGGGACAG-TGGCATCGATATTTGATTACA
1 TGTAAGACCACGTCTGGGAC-GTTGGCATCG-TACTTGATTACA
* * * *
80822424 TGTAAAACCACGTCTAGAACGTTGGCATTGTAC
1 TGTAAGACCACGTCTGGGACGTTGGCATCGTAC
80822457 GAGCTTTCTG
Statistics
Matches: 95, Mismatches: 19, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
42 31 0.33
43 34 0.36
44 28 0.29
45 2 0.02
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGTACTTGATTACA
Found at i:80828278 original size:40 final size:40
Alignment explanation
Indices: 80828133--80828296 Score: 168
Period size: 40 Copynumber: 4.1 Consensus size: 40
80828123 CGGGATTCAA
* * * *
80828133 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
80828173 CCGGATTTGGTAACTTGCACAATTGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* *
80828213 CCGGATATAA-CAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATC-ACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
80828253 CTGGATATAATCACTAGCATAAATGCCTTCGAGACTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
80828293 CCGG
1 CCGG
80828297 GTATCATTCA
Statistics
Matches: 100, Mismatches: 22, Indels: 4
0.79 0.17 0.03
Matches are distributed among these distances:
40 99 0.99
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:80828280 original size:80 final size:80
Alignment explanation
Indices: 80828133--80828296 Score: 186
Period size: 80 Copynumber: 2.0 Consensus size: 80
80828123 CGGGATTCAA
* * ** * *
80828133 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAATTG
1 CCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAATG
* *
80828198 CCTTCGGGTCTTAGC
66 CCTTCGAGACTTAGC
** * * * *
80828213 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCTGGATATAATCACTAGCATAAAT
1 CCGGATATAACAACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAAT
80828277 GCCTTCGAGACTTAGC
65 GCCTTCGAGACTTAGC
80828293 CCGG
1 CCGG
80828297 GTATCATTCA
Statistics
Matches: 69, Mismatches: 14, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
80 67 0.97
81 2 0.03
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (80 bp):
CCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAATG
CCTTCGAGACTTAGC
Found at i:80833334 original size:42 final size:42
Alignment explanation
Indices: 80833228--80833380 Score: 157
Period size: 43 Copynumber: 3.6 Consensus size: 42
80833218 CCGATATGTG
* * *
80833228 TTTCGTGTAGGACCATGTCTGGGACATTGGCATCG-ACTTATAA
1 TTTCGTGTAAGACCATGTCTGGGACGTTGGCATCGTAC-T-TGA
* *
80833271 TTTACGTGTAAGACTACGTCTGGGACGTTGGCATCGTACTTGA
1 TTT-CGTGTAAGACCATGTCTGGGACGTTGGCATCGTACTTGA
* * *
80833314 TTTCGTGTAAGACCTTGTCTGGGATAG-TGGCATCGATATTTGA
1 TTTCGTGTAAGACCATGTCTGGGA-CGTTGGCATCG-TACTTGA
* *
80833357 TTACATGTAAGACCATGTCTGGGA
1 TTTCGTGTAAGACCATGTCTGGGA
80833381 TATTGAAATT
Statistics
Matches: 93, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
42 26 0.28
43 36 0.39
44 29 0.31
45 2 0.02
ACGTcount: A:0.23, C:0.17, G:0.27, T:0.33
Consensus pattern (42 bp):
TTTCGTGTAAGACCATGTCTGGGACGTTGGCATCGTACTTGA
Found at i:80836983 original size:19 final size:18
Alignment explanation
Indices: 80836959--80836999 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
80836949 ATGTGACTCC
*
80836959 TTTTTCCAAAATTTTCTAA
1 TTTTTCCAAAATCTTCT-A
*
80836978 TTTTTCTAAAATCTTCTA
1 TTTTTCCAAAATCTTCTA
80836996 TTTT
1 TTTT
80837000 GTTTCGAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 5 0.25
19 15 0.75
ACGTcount: A:0.27, C:0.15, G:0.00, T:0.59
Consensus pattern (18 bp):
TTTTTCCAAAATCTTCTA
Found at i:80847825 original size:2 final size:2
Alignment explanation
Indices: 80847818--80847867 Score: 100
Period size: 2 Copynumber: 25.0 Consensus size: 2
80847808 ATGGAACAAC
80847818 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
80847860 AT AT AT AT
1 AT AT AT AT
80847868 TTTAATTGTT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:80848361 original size:13 final size:14
Alignment explanation
Indices: 80848333--80848359 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
80848323 ATGTTCATGA
80848333 AATTGATAATTTTT
1 AATTGATAATTTTT
80848347 AATTGATAATTTT
1 AATTGATAATTTT
80848360 AAGTGAGGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.56
Consensus pattern (14 bp):
AATTGATAATTTTT
Found at i:80848851 original size:20 final size:21
Alignment explanation
Indices: 80848821--80848875 Score: 69
Period size: 20 Copynumber: 2.7 Consensus size: 21
80848811 TAATTAAGTT
80848821 AAAGCTAAGTAAATGA-AATGG
1 AAAG-TAAGTAAATGAGAATGG
80848842 AAAGTAAGTAAAT-AGAATGG
1 AAAGTAAGTAAATGAGAATGG
* *
80848862 TAAGAAAGTAAATG
1 AAAGTAAGTAAATG
80848876 GAGTGGTTCA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 1 0.03
20 25 0.83
21 4 0.13
ACGTcount: A:0.55, C:0.02, G:0.24, T:0.20
Consensus pattern (21 bp):
AAAGTAAGTAAATGAGAATGG
Found at i:80848882 original size:20 final size:20
Alignment explanation
Indices: 80848827--80848882 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
80848817 AGTTAAAGCT
* * *
80848827 AAGTAAATGAAATGGAAAGT
1 AAGTAAATGGAATGGTAAGA
*
80848847 AAGTAAATAGAATGGTAAGA
1 AAGTAAATGGAATGGTAAGA
*
80848867 AAGTAAATGGAGTGGT
1 AAGTAAATGGAATGGT
80848883 TCATAATATT
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.29, T:0.21
Consensus pattern (20 bp):
AAGTAAATGGAATGGTAAGA
Found at i:80849580 original size:14 final size:15
Alignment explanation
Indices: 80849555--80849584 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
80849545 ACTGGTTGAA
80849555 TGAAATTTGGTTATT
1 TGAAATTTGGTTATT
80849570 TGAAA-TTGGTTATT
1 TGAAATTTGGTTATT
80849584 T
1 T
80849585 TATGCATGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.67
15 5 0.33
ACGTcount: A:0.27, C:0.00, G:0.20, T:0.53
Consensus pattern (15 bp):
TGAAATTTGGTTATT
Found at i:80852242 original size:23 final size:22
Alignment explanation
Indices: 80852203--80852247 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
80852193 TTAATCTATA
**
80852203 TTTTATTTTTATTAATAATTTT
1 TTTTATTTTTAAAAATAATTTT
*
80852225 TTTTATTTTTCAAAAATAGTTTT
1 TTTTATTTTT-AAAAATAATTTT
80852248 AACAGAGTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (22 bp):
TTTTATTTTTAAAAATAATTTT
Found at i:80855564 original size:27 final size:27
Alignment explanation
Indices: 80855534--80855585 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
80855524 TCATACAACC
* *
80855534 CATGTAATAGTAATTTAACATTCAAAT
1 CATGTAACAATAATTTAACATTCAAAT
**
80855561 CATGTAACAATAATTTGCCATTCAA
1 CATGTAACAATAATTTAACATTCAA
80855586 TTTCACATGA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.42, C:0.15, G:0.08, T:0.35
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAAAT
Found at i:80877696 original size:25 final size:24
Alignment explanation
Indices: 80877655--80877704 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 24
80877645 ATTAAACTGA
*
80877655 TTTTTTTAATAATAATATAGATAT
1 TTTTTTTAATAATAATATAAATAT
80877679 TTTTATTTAAT-ATCAATATAAATAT
1 TTTT-TTTAATAAT-AATATAAATAT
80877704 T
1 T
80877705 AAAATAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
24 6 0.26
25 17 0.74
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (24 bp):
TTTTTTTAATAATAATATAAATAT
Found at i:80878014 original size:29 final size:30
Alignment explanation
Indices: 80877981--80878038 Score: 73
Period size: 29 Copynumber: 1.9 Consensus size: 30
80877971 ATTATGTAAA
* *
80877981 GTTCAGTTTAGTCCATGT-ATTAAAAATAG
1 GTTCAATTTAATCCATGTAATTAAAAATAG
*
80878010 GTTCAATTTAATCCTTGTAAATTAAAAAT
1 GTTCAATTTAATCCATGT-AATTAAAAAT
80878039 TTATTCAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 15 0.62
31 9 0.38
ACGTcount: A:0.38, C:0.10, G:0.12, T:0.40
Consensus pattern (30 bp):
GTTCAATTTAATCCATGTAATTAAAAATAG
Found at i:80887349 original size:120 final size:120
Alignment explanation
Indices: 80887193--80887433 Score: 428
Period size: 120 Copynumber: 2.0 Consensus size: 120
80887183 AGTGGTACAA
*
80887193 GAGGTTTGGTTCCTTTATGACTTCTCATGATTTCAAAAGAAGTAGTTTTGACAATTATGTTTACT
1 GAGGTTTGATTCCTTTATGACTTCTCATGATTTCAAAAGAAGTAGTTTTGACAATTATGTTTACT
* * *
80887258 TTAAGAAAAACAGTGATGGTTTTTTTGTGTATTTACTTCTTTATGTTGATGACAT
66 TTAAGAAAAACAATGATAGTTCTTTTGTGTATTTACTTCTTTATGTTGATGACAT
*
80887313 GAGGTTTGATTCCTTTATGACTTCTCATGATTTCAAAAGAAGTAGTTTTGACAATTGTGTTTACT
1 GAGGTTTGATTCCTTTATGACTTCTCATGATTTCAAAAGAAGTAGTTTTGACAATTATGTTTACT
*
80887378 TTAAGAAAAATAATGATAGTTCTTTTGTGTATTTACTTCTTTATGTTGATGACAT
66 TTAAGAAAAACAATGATAGTTCTTTTGTGTATTTACTTCTTTATGTTGATGACAT
80887433 G
1 G
80887434 TTGATAGCAT
Statistics
Matches: 115, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
120 115 1.00
ACGTcount: A:0.27, C:0.10, G:0.18, T:0.45
Consensus pattern (120 bp):
GAGGTTTGATTCCTTTATGACTTCTCATGATTTCAAAAGAAGTAGTTTTGACAATTATGTTTACT
TTAAGAAAAACAATGATAGTTCTTTTGTGTATTTACTTCTTTATGTTGATGACAT
Found at i:80890593 original size:42 final size:42
Alignment explanation
Indices: 80890494--80890617 Score: 126
Period size: 42 Copynumber: 3.0 Consensus size: 42
80890484 GGTGCAGGAT
* * *
80890494 TCACACGGCCAAGACACACGCCCGT-TGGCTAGGCCTTGTGTC
1 TCACACAGCTAAGACACACGCCCGTGT-GCTAGGCCATGTGTC
* *
80890536 TCACATAGCTAAGACACACACCCGTGTGCTAGGCCATGTGTC
1 TCACACAGCTAAGACACACGCCCGTGTGCTAGGCCATGTGTC
** * * *
80890578 TCACACCTCTGAGACACATGCCCGTGT-CTCTGGCCATGTG
1 TCACACAGCTAAGACACACGCCCGTGTGCT-AGGCCATGTG
80890618 AACAATTCGA
Statistics
Matches: 68, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
41 2 0.03
42 65 0.96
43 1 0.01
ACGTcount: A:0.21, C:0.34, G:0.23, T:0.22
Consensus pattern (42 bp):
TCACACAGCTAAGACACACGCCCGTGTGCTAGGCCATGTGTC
Found at i:80902594 original size:46 final size:46
Alignment explanation
Indices: 80902541--80902716 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
80902531 TATTTGGGCA
80902541 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
80902587 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
80902634 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
80902680 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
80902717 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:80902696 original size:93 final size:93
Alignment explanation
Indices: 80902537--80902708 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
80902527 AGGATATTTG
* *
80902537 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
80902602 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
80902630 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
80902695 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
80902709 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:80905688 original size:15 final size:15
Alignment explanation
Indices: 80905668--80905732 Score: 89
Period size: 15 Copynumber: 4.4 Consensus size: 15
80905658 GTATCTTGGG
80905668 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
80905683 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
80905698 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
80905713 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
80905727 TTTCTT
1 TTTCTT
80905733 GTTATCTTTG
Statistics
Matches: 45, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
14 10 0.22
15 33 0.73
16 2 0.04
ACGTcount: A:0.11, C:0.15, G:0.12, T:0.62
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:80908166 original size:46 final size:46
Alignment explanation
Indices: 80908113--80908288 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
80908103 TATTTGGGCA
80908113 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
80908159 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
80908206 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
80908252 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
80908289 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:80908268 original size:93 final size:93
Alignment explanation
Indices: 80908109--80908280 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
80908099 AGGATATTTG
* *
80908109 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
80908174 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
80908202 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
80908267 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
80908281 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:80910880 original size:21 final size:22
Alignment explanation
Indices: 80910840--80910880 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
80910830 TTCCAAATAA
* *
80910840 AACATTATATCATTTCTAATTC
1 AACATTATATCAATTATAATTC
80910862 AACATT-TATCAATTATAAT
1 AACATTATATCAATTATAAT
80910881 CGGGCATGTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.41, C:0.15, G:0.00, T:0.44
Consensus pattern (22 bp):
AACATTATATCAATTATAATTC
Found at i:80912120 original size:15 final size:16
Alignment explanation
Indices: 80912093--80912122 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
80912083 AGATATTCCA
80912093 ATTTAGTCCCATTTTT
1 ATTTAGTCCCATTTTT
80912109 ATTTAG-CCCATTTT
1 ATTTAGTCCCATTTT
80912123 GGCAATTTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.20, C:0.20, G:0.07, T:0.53
Consensus pattern (16 bp):
ATTTAGTCCCATTTTT
Done.