Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 256 of 318
Found at i:80914726 original size:26 final size:26
Alignment explanation
Indices: 80914654--80914726 Score: 94
Period size: 26 Copynumber: 2.8 Consensus size: 26
80914644 AGCTCTTATA
* *
80914654 AGCTTCCTGA-TATATGGCTCATTGTG
1 AGCTTCCTAATTA-ATGGCTCTTTGTG
* *
80914680 AGCTTCCCAATTAAAGGCTCTTTGTG
1 AGCTTCCTAATTAATGGCTCTTTGTG
80914706 AGCTTCCTAATTAATGGCTCT
1 AGCTTCCTAATTAATGGCTCT
80914727 CCGGAGCTTC
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
26 38 0.95
27 2 0.05
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.37
Consensus pattern (26 bp):
AGCTTCCTAATTAATGGCTCTTTGTG
Found at i:80914806 original size:25 final size:25
Alignment explanation
Indices: 80914667--80914807 Score: 87
Period size: 26 Copynumber: 5.6 Consensus size: 25
80914657 TTCCTGATAT
*
80914667 ATGGCTCATTGTGAGCTTCCCAATTA
1 ATGGCTC-TTCTGAGCTTCCCAATTA
* * *
80914693 AAGGCTCTTTGTGAGCTTCCTAATTA
1 ATGGCTC-TTCTGAGCTTCCCAATTA
* *
80914719 ATGGCTCTCCGGAGCTTCCCAA-T-
1 ATGGCTCTTCTGAGCTTCCCAATTA
* ** **
80914742 ATGGCT-TGCTTGAATTTCCTGA-TA
1 ATGGCTCTTC-TGAGCTTCCCAATTA
80914766 TATGG-T-TATCTGGAGCTTCCCAATTA
1 -ATGGCTCT-TCT-GAGCTTCCCAATTA
80914792 ATGGCTCTTCTGAGCT
1 ATGGCTCTTCTGAGCT
80914808 ACCTGTTATT
Statistics
Matches: 88, Mismatches: 19, Indels: 17
0.71 0.15 0.14
Matches are distributed among these distances:
22 2 0.02
23 14 0.16
24 4 0.05
25 32 0.36
26 35 0.40
27 1 0.01
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.36
Consensus pattern (25 bp):
ATGGCTCTTCTGAGCTTCCCAATTA
Found at i:80916374 original size:66 final size:66
Alignment explanation
Indices: 80916297--80916428 Score: 237
Period size: 66 Copynumber: 2.0 Consensus size: 66
80916287 ATCATTAGAA
80916297 CCCTACTTTCAGCTGTATACTTGTACCCTTTTGAATCAAGAGTACTCAATGAAATCAAATTTATC
1 CCCTACTTTCAGCTGTATACTTGTACCCTTTTGAATCAAGAGTACTCAATGAAATCAAATTTATC
80916362 T
66 T
* * *
80916363 CCCTACTTTCAGCTGTGTACTTGTACCTTTTTGAATCAAGAGTACTTAATGAAATCAAATTTATC
1 CCCTACTTTCAGCTGTATACTTGTACCCTTTTGAATCAAGAGTACTCAATGAAATCAAATTTATC
80916428 T
66 T
80916429 TCAATTCCGG
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
66 63 1.00
ACGTcount: A:0.30, C:0.21, G:0.11, T:0.38
Consensus pattern (66 bp):
CCCTACTTTCAGCTGTATACTTGTACCCTTTTGAATCAAGAGTACTCAATGAAATCAAATTTATC
T
Found at i:80918276 original size:20 final size:20
Alignment explanation
Indices: 80918236--80918301 Score: 66
Period size: 19 Copynumber: 3.4 Consensus size: 20
80918226 TTAACTTTGC
*
80918236 AACTCAAAAAAT-TATAAAA
1 AACTTAAAAAATATATAAAA
* *
80918255 AA-TCTAAAGAATATATAGAA
1 AACT-TAAAAAATATATAAAA
80918275 AACTTAAAAAATATA-AAAA
1 AACTTAAAAAATATATAAAA
*
80918294 ACCTTAAA
1 AACTTAAA
80918302 CCTTAACCCT
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
18 1 0.03
19 18 0.47
20 18 0.47
21 1 0.03
ACGTcount: A:0.65, C:0.09, G:0.03, T:0.23
Consensus pattern (20 bp):
AACTTAAAAAATATATAAAA
Found at i:80923372 original size:4 final size:4
Alignment explanation
Indices: 80923363--80923389 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
80923353 ATAGCATTTC
80923363 AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAA
80923390 GGCACAATGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:80924977 original size:28 final size:29
Alignment explanation
Indices: 80924946--80925016 Score: 99
Period size: 29 Copynumber: 2.5 Consensus size: 29
80924936 GTCACCAAAT
*
80924946 AATTTAAAAAATTATAAATA-TTCAAAAA
1 AATTCAAAAAATTATAAATACTTCAAAAA
* **
80924974 AATTCAAAAAAATATAAATACTTCATCAA
1 AATTCAAAAAATTATAAATACTTCAAAAA
80925003 AATTCAAAAAATTA
1 AATTCAAAAAATTA
80925017 GCATGAAGTA
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
28 18 0.49
29 19 0.51
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.30
Consensus pattern (29 bp):
AATTCAAAAAATTATAAATACTTCAAAAA
Found at i:80924998 original size:29 final size:28
Alignment explanation
Indices: 80924946--80925013 Score: 91
Period size: 28 Copynumber: 2.4 Consensus size: 28
80924936 GTCACCAAAT
* *
80924946 AATTTAAAAAATTATAAATATTCAAAAA
1 AATTCAAAAAAATATAAATATTCAAAAA
**
80924974 AATTCAAAAAAATATAAATACTTCATCAA
1 AATTCAAAAAAATATAAATA-TTCAAAAA
80925003 AATTCAAAAAA
1 AATTCAAAAAA
80925014 TTAGCATGAA
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
28 18 0.51
29 17 0.49
ACGTcount: A:0.63, C:0.09, G:0.00, T:0.28
Consensus pattern (28 bp):
AATTCAAAAAAATATAAATATTCAAAAA
Found at i:80930400 original size:41 final size:40
Alignment explanation
Indices: 80930302--80930441 Score: 144
Period size: 41 Copynumber: 3.5 Consensus size: 40
80930292 ACACACTAGT
* *
80930302 TTGACACCCAGTGCCTCATC-AGATAATTCGAAGTAGTAAC
1 TTGACACCCAGTGCCTCATCGA-ATAAATCGAAGTAGTAAA
* **
80930342 TTGGCACCCAGTATCTCATCGAATAAATCTGAAGTAGTAAA
1 TTGACACCCAGTGCCTCATCGAATAAATC-GAAGTAGTAAA
* * * *
80930383 TTGACACCTAGTGTCTCATCGATTAAACCG-A--AGTAAA
1 TTGACACCCAGTGCCTCATCGAATAAATCGAAGTAGTAAA
*
80930420 TTGACACCCTGTGCCTCATCGA
1 TTGACACCCAGTGCCTCATCGA
80930442 CTTGAAGTTA
Statistics
Matches: 85, Mismatches: 13, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
37 25 0.29
39 1 0.01
40 24 0.28
41 35 0.41
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.26
Consensus pattern (40 bp):
TTGACACCCAGTGCCTCATCGAATAAATCGAAGTAGTAAA
Found at i:80931332 original size:25 final size:25
Alignment explanation
Indices: 80931286--80931349 Score: 85
Period size: 25 Copynumber: 2.6 Consensus size: 25
80931276 AGGCCGTGGC
*
80931286 TTTCTTTCTTTTTTCCTTTTTC-TT
1 TTTCTTTCTTTTTTCCTGTTTCGTT
80931310 TTTCTTTCTTTCTTTCCTGTTTCGTT
1 TTTCTTTCTTT-TTTCCTGTTTCGTT
* *
80931336 TTGCTTTGTTTTTT
1 TTTCTTTCTTTTTT
80931350 TTTCTAGTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
24 11 0.31
25 13 0.37
26 11 0.31
ACGTcount: A:0.00, C:0.19, G:0.06, T:0.75
Consensus pattern (25 bp):
TTTCTTTCTTTTTTCCTGTTTCGTT
Found at i:80932654 original size:20 final size:20
Alignment explanation
Indices: 80932592--80932654 Score: 56
Period size: 20 Copynumber: 3.1 Consensus size: 20
80932582 CCTGAATTGC
* *
80932592 ACATACGTGCCCTTATTTGT
1 ACATACGTGCCCCTGTTTGT
* * *
80932612 AC-TTCGATACCCCTGAATTGT
1 ACATACG-TGCCCCTG-TTTGT
80932633 ACATACGTGCCCCTGTTTGT
1 ACATACGTGCCCCTGTTTGT
80932653 AC
1 AC
80932655 TTCGGTACCC
Statistics
Matches: 32, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
19 3 0.09
20 13 0.41
21 13 0.41
22 3 0.09
ACGTcount: A:0.21, C:0.29, G:0.16, T:0.35
Consensus pattern (20 bp):
ACATACGTGCCCCTGTTTGT
Found at i:80932665 original size:20 final size:21
Alignment explanation
Indices: 80932601--80932668 Score: 68
Period size: 21 Copynumber: 3.3 Consensus size: 21
80932591 CACATACGTG
* *
80932601 CCCTTATTTGTACTTCGATAC
1 CCCTGATTTGTACTTCGGTAC
* * *
80932622 CCCTGAATTGTACATAC-GTGC
1 CCCTGATTTGTAC-TTCGGTAC
80932643 CCCTG-TTTGTACTTCGGTAC
1 CCCTGATTTGTACTTCGGTAC
80932663 CCCTGA
1 CCCTGA
80932669 ATGACACATT
Statistics
Matches: 36, Mismatches: 8, Indels: 6
0.72 0.16 0.12
Matches are distributed among these distances:
19 2 0.06
20 14 0.39
21 18 0.50
22 2 0.06
ACGTcount: A:0.18, C:0.31, G:0.16, T:0.35
Consensus pattern (21 bp):
CCCTGATTTGTACTTCGGTAC
Found at i:80932691 original size:41 final size:41
Alignment explanation
Indices: 80932581--80932691 Score: 161
Period size: 41 Copynumber: 2.7 Consensus size: 41
80932571 TTTAATTATT
*
80932581 CCCTGAATTGCACATACGTGCCCTTATTTGTACTTCGATAC
1 CCCTGAATTGCACATACGTGCCCTTGTTTGTACTTCGATAC
* * *
80932622 CCCTGAATTGTACATACGTGCCCCTGTTTGTACTTCGGTAC
1 CCCTGAATTGCACATACGTGCCCTTGTTTGTACTTCGATAC
*
80932663 CCCTGAA-TGACACATTCGTGCCCTTGTTT
1 CCCTGAATTG-CACATACGTGCCCTTGTTT
80932692 ACACTTGGGT
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
40 2 0.03
41 60 0.97
ACGTcount: A:0.19, C:0.30, G:0.17, T:0.34
Consensus pattern (41 bp):
CCCTGAATTGCACATACGTGCCCTTGTTTGTACTTCGATAC
Found at i:80935631 original size:37 final size:37
Alignment explanation
Indices: 80935566--80935717 Score: 214
Period size: 37 Copynumber: 4.1 Consensus size: 37
80935556 ACCTTTAGCT
* * *
80935566 CGGACGAAATCTCCACACGAAGTTATCGGGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
*
80935603 CAGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
* * *
80935640 CGGACATACTCTCTACACGTAGTCATCGGGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
* * *
80935677 CGGACATACTCTCCACACGTAGTCATCGGGTCTCACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
80935714 CGGA
1 CGGA
80935718 ATATTGTAAC
Statistics
Matches: 105, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 105 1.00
ACGTcount: A:0.25, C:0.33, G:0.20, T:0.22
Consensus pattern (37 bp):
CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
Found at i:80937219 original size:28 final size:28
Alignment explanation
Indices: 80937187--80937285 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
80937177 GCAATAAGCC
*
80937187 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
80937215 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
80937243 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
80937272 CGCACACTTAGTGC
1 CGCACACTTAGTGC
80937286 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:80944895 original size:28 final size:28
Alignment explanation
Indices: 80944863--80944961 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
80944853 GCAATAAGCC
*
80944863 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
80944891 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
80944919 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
80944948 CGCACACTTAGTGC
1 CGCACACTTAGTGC
80944962 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:80946484 original size:47 final size:47
Alignment explanation
Indices: 80946432--80946758 Score: 440
Period size: 47 Copynumber: 7.0 Consensus size: 47
80946422 TTTCACACTA
* * * * * *
80946432 GCCATTTGGCTTTACCACATATATGCATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
*
80946479 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
80946526 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
** * * *
80946573 GCCATTTTGCCTCATCACATATATGCATGTTCACATTCATCACATAG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* * * *
80946620 GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCATATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* *
80946667 GCCATTCGGCCTCATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* ***
80946714 GCGC-TTCGGCCTTATCACATATATACACATTCACATTCATCACAT
1 GC-CATTCGGCCTTATCACATATATGCATGCTCACATTCATCACAT
80946759 AAAATCCTAA
Statistics
Matches: 247, Mismatches: 32, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
47 246 1.00
48 1 0.00
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.32
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
Found at i:80946618 original size:25 final size:25
Alignment explanation
Indices: 80946539--80946618 Score: 80
Period size: 25 Copynumber: 3.3 Consensus size: 25
80946529 ATTCGGCCTT
*
80946539 ATCACATATATGCATGCTCACATTC
1 ATCACATATATGCATGTTCACATTC
* *
80946564 ATCACAT-T-GGCCATTTTGC-C--TC
1 ATCACATATATG-CATGTT-CACATTC
80946586 ATCACATATATGCATGTTCACATTC
1 ATCACATATATGCATGTTCACATTC
80946611 ATCACATA
1 ATCACATA
80946619 GGCCATTCGG
Statistics
Matches: 43, Mismatches: 5, Indels: 14
0.69 0.08 0.23
Matches are distributed among these distances:
22 10 0.23
23 8 0.19
24 7 0.16
25 18 0.42
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.34
Consensus pattern (25 bp):
ATCACATATATGCATGTTCACATTC
Found at i:80951254 original size:15 final size:14
Alignment explanation
Indices: 80951234--80951285 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 14
80951224 AGCCGTGTGT
80951234 CACACACAGTCTAGA
1 CACACACAGTCT-GA
* * *
80951249 CACACACCCGTGTGT
1 CACACA-CAGTCTGA
80951264 CACACACAGTCTGGA
1 CACACACAGTCT-GA
80951279 CACACAC
1 CACACAC
80951286 CCGTGTGTCT
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
14 4 0.14
15 21 0.72
16 4 0.14
ACGTcount: A:0.33, C:0.38, G:0.15, T:0.13
Consensus pattern (14 bp):
CACACACAGTCTGA
Found at i:80951308 original size:28 final size:30
Alignment explanation
Indices: 80951226--80951294 Score: 129
Period size: 30 Copynumber: 2.3 Consensus size: 30
80951216 ATGAGGAAAG
*
80951226 CCGTGTGTCACACACAGTCTAGACACACAC
1 CCGTGTGTCACACACAGTCTGGACACACAC
80951256 CCGTGTGTCACACACAGTCTGGACACACAC
1 CCGTGTGTCACACACAGTCTGGACACACAC
80951286 CCGTGTGTC
1 CCGTGTGTC
80951295 TGCCCGTGTG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.25, C:0.36, G:0.20, T:0.19
Consensus pattern (30 bp):
CCGTGTGTCACACACAGTCTGGACACACAC
Found at i:80952196 original size:48 final size:47
Alignment explanation
Indices: 80952072--80952209 Score: 161
Period size: 47 Copynumber: 2.9 Consensus size: 47
80952062 AGGGTAAATT
* * *
80952072 GCTGATGCCCTATCCCAGACATGGTCTTACATTGGCTCACATATTGAG
1 GCTGATG-CCTATCCCAGACATGGTCTTACACTGGCTCTCATAATGAG
** * *
80952120 G-TCGATGCCTATCTTAGACATGGTCTTACACTAGCTCTCATAATGTG
1 GCT-GATGCCTATCCCAGACATGGTCTTACACTGGCTCTCATAATGAG
* *
80952167 GCTGATGCCATGTCCCAGACATGGTCTTACACTGGTTCTCATA
1 GCTGATGCC-TATCCCAGACATGGTCTTACACTGGCTCTCATA
80952210 TCACCCAAAT
Statistics
Matches: 75, Mismatches: 12, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
47 41 0.55
48 34 0.45
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.31
Consensus pattern (47 bp):
GCTGATGCCTATCCCAGACATGGTCTTACACTGGCTCTCATAATGAG
Found at i:80953646 original size:45 final size:44
Alignment explanation
Indices: 80953582--80953707 Score: 128
Period size: 44 Copynumber: 2.8 Consensus size: 44
80953572 GAATTTAGAA
* * * * * *
80953582 ATCTGAACTCGTTTAGTTGGTTCGGGTTCGTGATATGTATGAG-GC
1 ATCTGAGCTTGTTAAGTTGGTTCGAGTTCAT--TATGGATGAGAGC
* * *
80953627 ATCTGAGCTTGTTGAGTTGGTCCGAGTTCATTATGGATGCGAGC
1 ATCTGAGCTTGTTAAGTTGGTTCGAGTTCATTATGGATGAGAGC
* *
80953671 ATCCGAGCTTGTTAAGTTGGTTCGAGTTCATTGTGGA
1 ATCTGAGCTTGTTAAGTTGGTTCGAGTTCATTATGGA
80953708 CGTGATACAT
Statistics
Matches: 68, Mismatches: 12, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
43 8 0.12
44 35 0.51
45 25 0.37
ACGTcount: A:0.18, C:0.14, G:0.31, T:0.37
Consensus pattern (44 bp):
ATCTGAGCTTGTTAAGTTGGTTCGAGTTCATTATGGATGAGAGC
Found at i:80961935 original size:48 final size:47
Alignment explanation
Indices: 80961848--80962014 Score: 142
Period size: 48 Copynumber: 3.5 Consensus size: 47
80961838 CGTGAAAGCC
* * * * *
80961848 AGACCATGTCTGGGACATGGCATTGGCCACCTG-ATGAGAGCCAGTGTA
1 AGACCATGTTTGAGACATGGCATAGG-CATCGGCA-GAGAGCCAGTGTA
* * *
80961896 AGACCATGTTTGAGACATGGCATCGGCATTGAG-ACGAGAGCTAGTGTA
1 AGACCATGTTTGAGACATGGCATAGGCATCG-GCA-GAGAGCCAGTGTA
* * * * *
80961944 AGACCATGTCTGGGACATGGCATATGCCTCGGCATATGAGCCAGTGTA
1 AGACCATGTTTGAGACATGGCATAGGCATCGGCAGA-GAGCCAGTGTA
80961992 AGACCATGTTTTGA-ACATGGCAT
1 AGACCATG-TTTGAGACATGGCAT
80962015 TGACAATTCA
Statistics
Matches: 97, Mismatches: 18, Indels: 8
0.79 0.15 0.07
Matches are distributed among these distances:
47 4 0.04
48 90 0.93
49 3 0.03
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.23
Consensus pattern (47 bp):
AGACCATGTTTGAGACATGGCATAGGCATCGGCAGAGAGCCAGTGTA
Found at i:80979632 original size:25 final size:28
Alignment explanation
Indices: 80979580--80979633 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 28
80979570 TTATCTATAT
* *
80979580 TATGTGTTGAATGATCGATTTTGCATAA
1 TATGTGTTGAATGATCGATTATGAATAA
80979608 TATG-GTTGAATG-T-GATTATGAATAA
1 TATGTGTTGAATGATCGATTATGAATAA
80979633 T
1 T
80979634 GCATGATGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 11 0.46
26 1 0.04
27 8 0.33
28 4 0.17
ACGTcount: A:0.31, C:0.04, G:0.22, T:0.43
Consensus pattern (28 bp):
TATGTGTTGAATGATCGATTATGAATAA
Found at i:80979793 original size:48 final size:47
Alignment explanation
Indices: 80979722--80980039 Score: 293
Period size: 48 Copynumber: 6.6 Consensus size: 47
80979712 TATGTGTGCT
* *
80979722 AGTGTAAGACCATGCTTGGAACATGGCATCGACCATGATATAAGAGCC
1 AGTGTAAGACCATGTTTGGAACATGGCATCG-CCATGATATGAGAGCC
*
80979770 AGTGTAAGACCATGTTTGGAACATGGCATCGGCAATG-TAGTGAGAGCC
1 AGTGTAAGACCATGTTTGGAACATGGCATC-GCCATGATA-TGAGAGCC
* * * * * * *
80979818 AGTGTAAGACCATGTCTGGGACATGGCATTGGCATTGATATGTGCGCT
1 AGTGTAAGACCATGTTTGGAACATGGCATCGCCA-TGATATGAGAGCC
* * * *
80979866 AGTGTAAGACCATGTCTGGTACATGGCATTGACCACT-TTATGAGAGCC
1 AGTGTAAGACCATGTTTGGAACATGGCATCG-CCA-TGATATGAGAGCC
* * * * * * * *
80979914 AGTGTAAGACCACGTCTGGGACATGGCATCGGCATTAAGACGAGAGCT
1 AGTGTAAGACCATGTTTGGAACATGGCATCGCCA-TGATATGAGAGCC
* * *
80979962 AGTGTAAGACCATGTTT-GAGACATGGCATCGGCC-TCGACATGTGAGCT
1 AGTGTAAGACCATGTTTGGA-ACATGGCATC-GCCAT-GATATGAGAGCC
80980010 AGTGTAAGACCATGTTTGGAACATGGCATC
1 AGTGTAAGACCATGTTTGGAACATGGCATC
80980040 AGCAATTAAC
Statistics
Matches: 225, Mismatches: 35, Indels: 20
0.80 0.12 0.07
Matches are distributed among these distances:
47 9 0.04
48 206 0.92
49 10 0.04
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACCATGTTTGGAACATGGCATCGCCATGATATGAGAGCC
Found at i:80979857 original size:96 final size:95
Alignment explanation
Indices: 80979722--80980039 Score: 347
Period size: 96 Copynumber: 3.3 Consensus size: 95
80979712 TATGTGTGCT
* * *
80979722 AGTGTAAGACCATG-CTTGGAACATGGCATCGACCA-TGATATAAGAGCCAGTGTAAGACCATGT
1 AGTGTAAGACCATGTC-TGGAACATGGCATCG-GCATTGATATGAGAGCTAGTGTAAGACCATGT
*
80979785 TTGGAACATGGCATCGGCAATGTAGTGAGAGCC
64 TTGGAACATGGCATCGGCACTGTA-TGAGAGCC
* * * * *
80979818 AGTGTAAGACCATGTCTGGGACATGGCATTGGCATTGATATGTGCGCTAGTGTAAGACCATGTCT
1 AGTGTAAGACCATGTCTGGAACATGGCATCGGCATTGATATGAGAGCTAGTGTAAGACCATGTTT
* * * *
80979883 GGTACATGGCATTGACCACTTTATGAGAGCC
66 GGAACATGGCATCG-GCACTGTATGAGAGCC
* * * * *
80979914 AGTGTAAGACCACGTCTGGGACATGGCATCGGCATTAAGACGAGAGCTAGTGTAAGACCATGTTT
1 AGTGTAAGACCATGTCTGGAACATGGCATCGGCATTGATATGAGAGCTAGTGTAAGACCATGTTT
* * *
80979979 -GAGACATGGCATCGGC-CTCGACATGTGAGCT
66 GGA-ACATGGCATCGGCACT-G-TATGAGAGCC
*
80980010 AGTGTAAGACCATGTTTGGAACATGGCATC
1 AGTGTAAGACCATGTCTGGAACATGGCATC
80980040 AGCAATTAAC
Statistics
Matches: 185, Mismatches: 31, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
94 2 0.01
95 4 0.02
96 173 0.94
97 6 0.03
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (95 bp):
AGTGTAAGACCATGTCTGGAACATGGCATCGGCATTGATATGAGAGCTAGTGTAAGACCATGTTT
GGAACATGGCATCGGCACTGTATGAGAGCC
Found at i:80979971 original size:144 final size:144
Alignment explanation
Indices: 80979711--80980039 Score: 432
Period size: 144 Copynumber: 2.3 Consensus size: 144
80979701 AATTTGGGTT
*
80979711 ATATGTGTGCTAGTGTAAGACCATG-CTTGGAACATGGCATCGACCATGATATAAGAGCCAGTGT
1 ATATGTGAGCTAGTGTAAGACCATGTC-TGGAACATGGCATCGACCATGATATAAGAGCCAGTGT
* * * *
80979775 AAGACCATGTTTGGAACATGGCATCGGCAATGTAGTGAGAGCCAGTGTAAGACCATGTCTGGGAC
65 AAGACCACGTCTGGAACATGGCATCGGCAATGTAGCGAGAGCCAGTGTAAGACCATGTCTGAGAC
* *
80979840 ATGGCATTGGCATTG
130 ATGGCATCGGCATCG
* * * * *
80979855 ATATGTGCGCTAGTGTAAGACCATGTCTGGTACATGGCATTGACCACT-TTATGAGAGCCAGTGT
1 ATATGTGAGCTAGTGTAAGACCATGTCTGGAACATGGCATCGACCA-TGATATAAGAGCCAGTGT
* * *
80979919 AAGACCACGTCTGGGACATGGCATCGGC-AT-TAAGACGAGAGCTAGTGTAAGACCATGTTTGAG
65 AAGACCACGTCTGGAACATGGCATCGGCAATGT-AG-CGAGAGCCAGTGTAAGACCATGTCTGAG
*
80979982 ACATGGCATCGGCCTCG
128 ACATGGCATCGGCATCG
* *
80979999 ACATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATC
1 ATATGTGAGCTAGTGTAAGACCATGTCTGGAACATGGCATC
80980040 AGCAATTAAC
Statistics
Matches: 161, Mismatches: 20, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
142 1 0.01
143 4 0.02
144 154 0.96
145 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.25
Consensus pattern (144 bp):
ATATGTGAGCTAGTGTAAGACCATGTCTGGAACATGGCATCGACCATGATATAAGAGCCAGTGTA
AGACCACGTCTGGAACATGGCATCGGCAATGTAGCGAGAGCCAGTGTAAGACCATGTCTGAGACA
TGGCATCGGCATCG
Found at i:80986626 original size:30 final size:30
Alignment explanation
Indices: 80986559--80986657 Score: 117
Period size: 30 Copynumber: 3.3 Consensus size: 30
80986549 CTGTGTACTA
* * *
80986559 GGCCGTGTCCTCCATATGATTGGGACACAC
1 GGCCGTGTCCTCCACACGGTTGGGACACAC
* * * *
80986589 GGTCGTGTCCTCCACACGGTTGGTATACAT
1 GGCCGTGTCCTCCACACGGTTGGGACACAC
*
80986619 GGCCGTGTCCTCCACACGGTTAGGACACAC
1 GGCCGTGTCCTCCACACGGTTGGGACACAC
*
80986649 GGCTGTGTC
1 GGCCGTGTC
80986658 TTTGCCCGTG
Statistics
Matches: 56, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
30 56 1.00
ACGTcount: A:0.17, C:0.30, G:0.28, T:0.24
Consensus pattern (30 bp):
GGCCGTGTCCTCCACACGGTTGGGACACAC
Found at i:80987616 original size:48 final size:48
Alignment explanation
Indices: 80987549--80987922 Score: 347
Period size: 48 Copynumber: 7.8 Consensus size: 48
80987539 GTGAATTGTC
* * * * * * *
80987549 GATGCCAAGTTCTAAACATGGTCTTACACTGGCTCACATGTCGAGGCT
1 GATGCCATGTTCCAGACATGGTCTTACACTAGCTCACATATCAATGCT
* *
80987597 GATGCCATGTTCCAGACATGGTCTTACACTAGCTCTA-GTATCAATGCC
1 GATGCCATGTTCCAGACATGGTCTTACACTAGCTC-ACATATCAATGCT
* * *
80987645 AATGCCATGTCCCAGACATGGTCTTA-ACTAGCGT-ACATATCAATGCC
1 GATGCCATGTTCCAGACATGGTCTTACACTAGC-TCACATATCAATGCT
* *
80987692 GATGCCATGTCCCAGACATGGTCTTACACTAGCGCACATATCAATG-T
1 GATGCCATGTTCCAGACATGGTCTTACACTAGCTCACATATCAATGCT
* * *
80987739 CGATGCCATG-TCCTAGACATGGTCTTACACTGGCTCGCACTA-CATTGCT
1 -GATGCCATGTTCC-AGACATGGTCTTACACTAGCTCACA-TATCAATGCT
* * * * *
80987788 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATC-GTGGCC
1 GATGCCATGTTCCAGACATGGTCTTACACTAGCTCACATATCAAT-GCT
*
80987836 GATGCCATG-TCCTAGACATGGTCTTACACTAG-TGCACATGTCAATG-T
1 GATGCCATGTTCC-AGACATGGTCTTACACTAGCT-CACATATCAATGCT
* * * *
80987883 CGATGCCATGTCCCAGATATGGT-TTTCACTAGCACACATA
1 -GATGCCATGTTCCAGACATGGTCTTACACTAGCTCACATA
80987923 GCACCCAAAT
Statistics
Matches: 273, Mismatches: 35, Indels: 37
0.79 0.10 0.11
Matches are distributed among these distances:
46 1 0.00
47 63 0.23
48 199 0.73
49 10 0.04
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.28
Consensus pattern (48 bp):
GATGCCATGTTCCAGACATGGTCTTACACTAGCTCACATATCAATGCT
Found at i:80987888 original size:96 final size:97
Alignment explanation
Indices: 80987548--80987915 Score: 414
Period size: 96 Copynumber: 3.9 Consensus size: 97
80987538 GGTGAATTGT
* * * * * *
80987548 CGATGCCAAGTTCTAAACATGGTCTTACACTGGCT-CACATGTCGAGGCTGATGCCATGTTCCAG
1 CGATGCCATGTCCTAGACATGGTCTTACACTAGCTGCACATGTCAATGCTGATGCCATGTTCCAG
80987612 ACATGGTCTTACACTAGCTCT-AGTATCAATGC
66 ACATGGTCTTACACTAGCTCTCA-TATCAATGC
* * * * * *
80987644 CAATGCCATGTCCCAGACATGGTCTTA-ACTAGC-GTACATATCAATGCCGATGCCATGTCCCAG
1 CGATGCCATGTCCTAGACATGGTCTTACACTAGCTGCACATGTCAATGCTGATGCCATGTTCCAG
* * *
80987707 ACATGGTCTTACACTAGCGCACATATCAATGT
66 ACATGGTCTTACACTAGCTCTCATATCAATGC
* * *
80987739 CGATGCCATGTCCTAGACATGGTCTTACACTGGCTCGCAC-T-ACATTGCTGATGCCATGTTCCA
1 CGATGCCATGTCCTAGACATGGTCTTACACTAGCT-GCACATGTCAATGCTGATGCCATGTTCCA
* * *
80987802 AACATGGTCTTACACTGGCTCTCATATC-GTGGC
65 GACATGGTCTTACACTAGCTCTCATATCAAT-GC
*
80987835 CGATGCCATGTCCTAGACATGGTCTTACACTAG-TGCACATGTCAATG-TCGATGCCATGTCCCA
1 CGATGCCATGTCCTAGACATGGTCTTACACTAGCTGCACATGTCAATGCT-GATGCCATGTTCCA
* *
80987898 GATATGGT-TTTCACTAGC
65 GACATGGTCTTACACTAGC
80987916 ACACATAGCA
Statistics
Matches: 226, Mismatches: 37, Indels: 19
0.80 0.13 0.07
Matches are distributed among these distances:
94 4 0.02
95 92 0.41
96 126 0.56
97 1 0.00
98 3 0.01
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.28
Consensus pattern (97 bp):
CGATGCCATGTCCTAGACATGGTCTTACACTAGCTGCACATGTCAATGCTGATGCCATGTTCCAG
ACATGGTCTTACACTAGCTCTCATATCAATGC
Found at i:80987915 original size:191 final size:191
Alignment explanation
Indices: 80987545--80987922 Score: 514
Period size: 191 Copynumber: 2.0 Consensus size: 191
80987535 GAGGGTGAAT
* *
80987545 TGTCGATGCCAAGTTCTAAACATGGTCTTACACTGGCTCACATGTCGAGGCTGATGCCATGTTCC
1 TGTCGATGCCAAGTCCTAAACATGGTCTTACACTGGCTCACATGACGAGGCTGATGCCATGTTCC
*
80987610 AGACATGGTCTTACACTAGCTCTAGTATCAATGCCAATGCCATGTCCCAGACATGGTCTTAACTA
66 AAACATGGTCTTACACTAGCTCTAGTATCAATGCCAATGCCATGTCCCAGACATGGTCTTAACTA
* *
80987675 GCGTACATATCAATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCGCACATATCAA
131 GCGCACATATCAATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAA
* * * *
80987736 TGTCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCGCACT-AC-ATTGCTGATGCCATGTT
1 TGTCGATGCCAAGTCCTAAACATGGTCTTACACTGGCTCACA-TGACGA-GGCTGATGCCATGTT
* * * *
80987799 CCAAACATGGTCTTACACTGGCTCTCA-TATC-GTGGCCGATGCCATGTCCTAGACATGGTCTTA
64 CCAAACATGGTCTTACACTAGCTCT-AGTATCAAT-GCCAATGCCATGTCCCAGACATGGTCTTA
* * * * *
80987862 CACTAGTGCACATGTCAATGTCGATGCCATGTCCCAGATATGGT-TTTCACTAGCACACATA
127 -ACTAGCGCACATATCAATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATA
80987923 GCACCCAAAT
Statistics
Matches: 164, Mismatches: 18, Indels: 10
0.85 0.09 0.05
Matches are distributed among these distances:
190 2 0.01
191 122 0.74
192 40 0.24
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.28
Consensus pattern (191 bp):
TGTCGATGCCAAGTCCTAAACATGGTCTTACACTGGCTCACATGACGAGGCTGATGCCATGTTCC
AAACATGGTCTTACACTAGCTCTAGTATCAATGCCAATGCCATGTCCCAGACATGGTCTTAACTA
GCGCACATATCAATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAA
Found at i:80991677 original size:46 final size:44
Alignment explanation
Indices: 80991618--80991732 Score: 140
Period size: 44 Copynumber: 2.6 Consensus size: 44
80991608 ACAGGACAGA
* *
80991618 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* * *
80991664 ATAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
80991708 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
80991733 GTCAAAGACA
Statistics
Matches: 59, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
44 34 0.58
46 25 0.42
ACGTcount: A:0.36, C:0.13, G:0.23, T:0.29
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:80995966 original size:21 final size:21
Alignment explanation
Indices: 80995942--80995984 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
80995932 ATTGTTGGAG
80995942 AATGTTTGTAAAATTTCAAGT
1 AATGTTTGTAAAATTTCAAGT
80995963 AATGTTTGTAAAATTTCAAGT
1 AATGTTTGTAAAATTTCAAGT
80995984 A
1 A
80995985 TATTCGGCCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.40, C:0.05, G:0.14, T:0.42
Consensus pattern (21 bp):
AATGTTTGTAAAATTTCAAGT
Found at i:80996497 original size:30 final size:30
Alignment explanation
Indices: 80996461--80996618 Score: 218
Period size: 29 Copynumber: 5.4 Consensus size: 30
80996451 GACAAGATTG
* * * * *
80996461 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
80996491 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
80996519 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
80996548 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
80996578 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
80996607 GCACTAAGTGTG
1 GCACTAAGTGTG
80996619 GGGATTCACT
Statistics
Matches: 118, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.19
29 47 0.40
30 45 0.38
31 2 0.02
ACGTcount: A:0.34, C:0.13, G:0.25, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:80996588 original size:59 final size:57
Alignment explanation
Indices: 80996461--80996618 Score: 219
Period size: 59 Copynumber: 2.7 Consensus size: 57
80996451 GACAAGATTG
* * * * * *
80996461 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGCTGAAAA-TATATAGCACTAAGTGTGCGAGTCTGATTATATA
80996519 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAG-CTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTG---ATTATATA
80996578 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTG
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTG
80996619 GGGATTCACT
Statistics
Matches: 91, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 20 0.22
59 49 0.54
ACGTcount: A:0.34, C:0.13, G:0.25, T:0.28
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTGATTATATA
Found at i:81001128 original size:48 final size:48
Alignment explanation
Indices: 81001076--81001486 Score: 384
Period size: 48 Copynumber: 8.6 Consensus size: 48
81001066 CAAGTTCTAA
* * * *
81001076 ACATGGTCTTACACTGGCTCACATCTCGAGGCCGATGCCATGTCCTAG
1 ACATGGTCTTACACTAGCTCACATATCAAGGCCGATGCCATGTCCCAG
* * * * *
81001124 ACATGGTCTTACACTAGCTCTCGTCTCAATGCCGATGCCATGTCCAAG
1 ACATGGTCTTACACTAGCTCACATATCAAGGCCGATGCCATGTCCCAG
* * * * *
81001172 ACATGGTCTTACATTGGCTCTCATA--AGGTGACCGATGCCATGTCCTAG
1 ACATGGTCTTACACTAGCTCACATATCAAG-G-CCGATGCCATGTCCCAG
* * * *
81001220 ACATGGTCTTACACTGGCTCTCATA--AGGTGGCGATGCCATGTCCCAG
1 ACATGGTCTTACACTAGCTCACATATCAAG-GCCGATGCCATGTCCCAG
* * * *
81001267 ACATGGTCTTACACTAGCGCACATATCAATGTCGATGCCATGTCCCAA
1 ACATGGTCTTACACTAGCTCACATATCAAGGCCGATGCCATGTCCCAG
* * * * ** * *
81001315 ATATGGTCTTGCACTGGCTCGCACTA-CATTGCCGATGCCATGTTCCAA
1 ACATGGTCTTACACTAGCTCACA-TATCAAGGCCGATGCCATGTCCCAG
* **
81001363 ACATGGTCTTACACTAGCTCTA-ATATCATGGAAGATGCCATGTCCCAG
1 ACATGGTCTTACACTAGCTC-ACATATCAAGGCCGATGCCATGTCCCAG
* * *
81001411 ACATGGTCTTACACTAGCGCACATATCAATGCCGATGCCATATCCCAG
1 ACATGGTCTTACACTAGCTCACATATCAAGGCCGATGCCATGTCCCAG
* * *
81001459 ACATAGTCTTTCACTAGCACACATATCA
1 ACATGGTCTTACACTAGCTCACATATCA
81001487 CCCAAATATC
Statistics
Matches: 306, Mismatches: 49, Indels: 16
0.82 0.13 0.04
Matches are distributed among these distances:
46 1 0.00
47 41 0.13
48 261 0.85
49 3 0.01
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (48 bp):
ACATGGTCTTACACTAGCTCACATATCAAGGCCGATGCCATGTCCCAG
Found at i:81001402 original size:191 final size:191
Alignment explanation
Indices: 81001076--81001486 Score: 472
Period size: 191 Copynumber: 2.1 Consensus size: 191
81001066 CAAGTTCTAA
* * * * * *
81001076 ACATGGTCTTACACTGGCTCACATCTCGAGGCCGATGCCATGTCCTAGACATGGTCTTACACTAG
1 ACATGGTCTTACACTAGCACACATATCAAGGCCGATGCCATGTCCCAAACATGGTCTTACACTAG
* * * * * *
81001141 CTCTCGTCTCAATGCCGATGCCATGTCCAAGACATGGTCTTACATTGGCTCTCATAAGGTGACCG
66 CTCGCGACTCAATGCCGATGCCATGTCCAAGACATGGTCTTACACTAGCTCTAATAAGGTGACAG
* * * * * * *
81001206 ATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATA-AGGTGGCGATGCCATGTCCCAG
131 ATGCCATGTCCCAGACATGGTCTTACACTAGCGCACATACA-ATGCCGATGCCATATCCCAG
* * * * * *
81001267 ACATGGTCTTACACTAGCGCACATATCAATGTCGATGCCATGTCCCAAATATGGTCTTGCACTGG
1 ACATGGTCTTACACTAGCACACATATCAAGGCCGATGCCATGTCCCAAACATGGTCTTACACTAG
* *
81001332 CTCGC-ACTACATTGCCGATGCCATGTTCCAA-ACATGGTCTTACACTAGCTCTAATATCATG-G
66 CTCGCGACT-CAATGCCGATGCCATG-TCCAAGACATGGTCTTACACTAGCTCTAATA--AGGTG
81001394 A-AGATGCCATGTCCCAGACATGGTCTTACACTAGCGCACATATCAATGCCGATGCCATATCCCA
127 ACAGATGCCATGTCCCAGACATGGTCTTACACTAGCGCACATA-CAATGCCGATGCCATATCCCA
81001458 G
191 G
* *
81001459 ACATAGTCTTTCACTAGCACACATATCA
1 ACATGGTCTTACACTAGCACACATATCA
81001487 CCCAAATATC
Statistics
Matches: 185, Mismatches: 29, Indels: 11
0.82 0.13 0.05
Matches are distributed among these distances:
190 2 0.01
191 131 0.71
192 49 0.26
193 3 0.02
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (191 bp):
ACATGGTCTTACACTAGCACACATATCAAGGCCGATGCCATGTCCCAAACATGGTCTTACACTAG
CTCGCGACTCAATGCCGATGCCATGTCCAAGACATGGTCTTACACTAGCTCTAATAAGGTGACAG
ATGCCATGTCCCAGACATGGTCTTACACTAGCGCACATACAATGCCGATGCCATATCCCAG
Found at i:81008238 original size:16 final size:16
Alignment explanation
Indices: 81008219--81008249 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
81008209 ATTGATTTTG
*
81008219 TACATGACATTCTGCA
1 TACATGACATACTGCA
81008235 TACATGACATACTGC
1 TACATGACATACTGC
81008250 TTGGGATTGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.32, C:0.26, G:0.13, T:0.29
Consensus pattern (16 bp):
TACATGACATACTGCA
Found at i:81008540 original size:32 final size:32
Alignment explanation
Indices: 81008482--81008554 Score: 101
Period size: 32 Copynumber: 2.3 Consensus size: 32
81008472 TATTGAAATA
* * *
81008482 GGCTAGGCCCAACTGATACTGGTTCTGATATG
1 GGCTAGGCCAAACTGATACTGATTCTGAGATG
* *
81008514 GGCTTGGCCAAACTGATATTGATTCTGAGATG
1 GGCTAGGCCAAACTGATACTGATTCTGAGATG
81008546 GGCTAGGCC
1 GGCTAGGCC
81008555 CAATTGAGAC
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.27
Consensus pattern (32 bp):
GGCTAGGCCAAACTGATACTGATTCTGAGATG
Found at i:81011948 original size:27 final size:27
Alignment explanation
Indices: 81011928--81012121 Score: 226
Period size: 27 Copynumber: 7.2 Consensus size: 27
81011918 ATTACTGAAA
*
81011928 TACCCTCGATTTACAGAATTATTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * *
81011955 TAGCCTTGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
81011982 TACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* **
81012009 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * *
81012036 TACCCTCTATTTACAGAATTATTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * *
81012063 TTCCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * **
81012090 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACTGTTT
81012117 TACCC
1 TACCC
81012122 ATAGGGTGTT
Statistics
Matches: 146, Mismatches: 21, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 146 1.00
ACGTcount: A:0.29, C:0.21, G:0.07, T:0.43
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:81012056 original size:81 final size:81
Alignment explanation
Indices: 81011928--81012121 Score: 255
Period size: 81 Copynumber: 2.4 Consensus size: 81
81011918 ATTACTGAAA
* *** * *
81011928 TACCCTCGATTTACAGAATTATTGTTTTAGCCTTGATTTACAAAATTACTGTTTTACCCTCGATT
1 TACCCTCGATTTATAGAATTACCATTTTACCCTTGATTTACAAAATTACTATTTTACCCTCGATT
*
81011993 TACAAAATTACTGTTT
66 TACAAAATTACTATTT
* * *
81012009 TACCCTCGATTTATAGAATTACCATTTTACCCTCT-ATTTACAGAATTATTATTTTTCCCTCGAT
1 TACCCTCGATTTATAGAATTACCATTTTACCCT-TGATTTACAAAATTACTATTTTACCCTCGAT
* *
81012073 TTATAGAATTACTATTT
65 TTACAAAATTACTATTT
*
81012090 TACCCTCGATTTATAAAATTACCATTTTACCC
1 TACCCTCGATTTATAGAATTACCATTTTACCC
81012122 ATAGGGTGTT
Statistics
Matches: 99, Mismatches: 13, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
81 98 0.99
82 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.07, T:0.43
Consensus pattern (81 bp):
TACCCTCGATTTATAGAATTACCATTTTACCCTTGATTTACAAAATTACTATTTTACCCTCGATT
TACAAAATTACTATTT
Found at i:81012110 original size:54 final size:54
Alignment explanation
Indices: 81011928--81012110 Score: 249
Period size: 54 Copynumber: 3.4 Consensus size: 54
81011918 ATTACTGAAA
* * * * * *
81011928 TACCCTCGATTTACAGAATTATTGTTTTAGCCTTGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTATTGTTTTACCCTCGATTTATAGAATTACTATTT
* *
81011982 TACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAAAATTATTGTTTTACCCTCGATTTATAGAATTACTATTT
* * * *
81012036 TACCCTCTATTTACAGAATTATTATTTTTCCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTATTGTTTTACCCTCGATTTATAGAATTACTATTT
*
81012090 TACCCTCGATTTATAAAATTA
1 TACCCTCGATTTACAAAATTA
81012111 CCATTTTACC
Statistics
Matches: 112, Mismatches: 17, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 112 1.00
ACGTcount: A:0.30, C:0.19, G:0.08, T:0.44
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTATTGTTTTACCCTCGATTTATAGAATTACTATTT
Found at i:81012414 original size:27 final size:28
Alignment explanation
Indices: 81012356--81012417 Score: 83
Period size: 27 Copynumber: 2.3 Consensus size: 28
81012346 CCTCGCTGCA
* *
81012356 ATCTGGTAGCCTCGCAACATATATCTGT
1 ATCTGGTGGCCTAGCAACATATATCTGT
*
81012384 -TCTGGTGGCCTAGCCACA-ATATCTGT
1 ATCTGGTGGCCTAGCAACATATATCTGT
81012410 ATCTGGTG
1 ATCTGGTG
81012418 ACTTCGTTAC
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
26 8 0.27
27 22 0.73
ACGTcount: A:0.21, C:0.24, G:0.23, T:0.32
Consensus pattern (28 bp):
ATCTGGTGGCCTAGCAACATATATCTGT
Found at i:81012593 original size:6 final size:6
Alignment explanation
Indices: 81012554--81012681 Score: 73
Period size: 6 Copynumber: 20.8 Consensus size: 6
81012544 TTGCATTCAT
* * * *
81012554 ATTCTG ATTTTG ATTCT- ATTACCTG ATACTG ATTCTG ATTCTA ATTTTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * * * *
81012603 -TCACCTA ATTCTG ATTTTG TTTTTG ATTCTG ATTCTG -TCACTTG ATTCTG
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG
* *
81012653 ATTCTG ATTCTG ATTCTC ATTTTG ATTCT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCT
81012682 AGTTCTGGTA
Statistics
Matches: 91, Mismatches: 22, Indels: 18
0.69 0.17 0.14
Matches are distributed among these distances:
5 5 0.05
6 76 0.84
7 6 0.07
8 4 0.04
ACGTcount: A:0.19, C:0.16, G:0.12, T:0.52
Consensus pattern (6 bp):
ATTCTG
Found at i:81012617 original size:37 final size:37
Alignment explanation
Indices: 81012576--81012676 Score: 121
Period size: 37 Copynumber: 2.7 Consensus size: 37
81012566 ATTCTATTAC
*
81012576 CTGATACTGATTCTGATTCTAATTTTGTCACCTAATT
1 CTGATTCTGATTCTGATTCTAATTTTGTCACCTAATT
* * * * * * *
81012613 CTGATTTTGTTTTTGATTCTGATTCTGTCACTTGATT
1 CTGATTCTGATTCTGATTCTAATTTTGTCACCTAATT
*
81012650 CTGATTCTGATTCTGATTCTCATTTTG
1 CTGATTCTGATTCTGATTCTAATTTTG
81012677 ATTCTAGTTC
Statistics
Matches: 51, Mismatches: 13, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
37 51 1.00
ACGTcount: A:0.18, C:0.17, G:0.14, T:0.51
Consensus pattern (37 bp):
CTGATTCTGATTCTGATTCTAATTTTGTCACCTAATT
Found at i:81012649 original size:19 final size:19
Alignment explanation
Indices: 81012589--81012658 Score: 70
Period size: 19 Copynumber: 3.7 Consensus size: 19
81012579 ATACTGATTC
* * *
81012589 TGATTCTAATTTTGTCACC
1 TGATTCTGATTCTGTCACT
* * **
81012608 TAATTCTGATTTTGT-TTT
1 TGATTCTGATTCTGTCACT
81012626 TGATTCTGATTCTGTCACT
1 TGATTCTGATTCTGTCACT
81012645 TGATTCTGATTCTG
1 TGATTCTGATTCTG
81012659 ATTCTGATTC
Statistics
Matches: 41, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
18 13 0.32
19 28 0.68
ACGTcount: A:0.17, C:0.16, G:0.14, T:0.53
Consensus pattern (19 bp):
TGATTCTGATTCTGTCACT
Found at i:81014705 original size:27 final size:27
Alignment explanation
Indices: 81014675--81014868 Score: 244
Period size: 27 Copynumber: 7.2 Consensus size: 27
81014665 ATTACTAAAA
* *
81014675 TACCTTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
*
81014702 TACCCTTGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
*
81014729 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * **
81014756 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACTGTTT
*
81014783 TACCCTCGATTTACAAAATTATTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * *
81014810 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * **
81014837 TATCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTGTTT
81014864 TACCC
1 TACCC
81014869 CTAGGGTGTT
Statistics
Matches: 146, Mismatches: 21, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 146 1.00
ACGTcount: A:0.29, C:0.21, G:0.07, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTGTTT
Found at i:81014765 original size:81 final size:81
Alignment explanation
Indices: 81014657--81014868 Score: 280
Period size: 81 Copynumber: 2.6 Consensus size: 81
81014647 AATACTTTAG
* *** * * ** *
81014657 TTTACCAAATTACTAAAATACCTTCGATTTACAGAATTACTGTTTTACCCTTGATTTACAAAATT
1 TTTACAAAATTACTATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATT
81014722 ACTGTTTTACCCTCGA
66 ACTGTTTTACCCTCGA
81014738 TTTACAAAATTACTATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATT
1 TTTACAAAATTACTATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATT
*
81014803 ATTGTTTTACCCTCGA
66 ACTGTTTTACCCTCGA
* * ** * *
81014819 TTTATAGAATTACCGTTTTATCCTCGATTTATAAAATTACCATTTTACCC
1 TTTACAAAATTACTATTTTACCCTCGATTTATAGAATTACCATTTTACCC
81014869 CTAGGGTGTT
Statistics
Matches: 115, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 115 1.00
ACGTcount: A:0.31, C:0.21, G:0.07, T:0.42
Consensus pattern (81 bp):
TTTACAAAATTACTATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATT
ACTGTTTTACCCTCGA
Found at i:81015199 original size:2 final size:2
Alignment explanation
Indices: 81015194--81015223 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
81015184 CCACACACAC
81015194 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
81015224 TCTGGTGGCC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:81015433 original size:6 final size:6
Alignment explanation
Indices: 81015394--81015526 Score: 83
Period size: 6 Copynumber: 21.7 Consensus size: 6
81015384 TTGCATTCAT
* * * *
81015394 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTA ATTTTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
81015443 -TCACCTA ATTCTG ATTCTG TTTCTG ATTCTG ATTCTG -TCACCTG ATTCTG
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG
* * * *
81015493 ATTCTG ATTCTA ATTCTC ATTTTG ATTCTA ATTC
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTC
81015527 CCATCTGGTA
Statistics
Matches: 96, Mismatches: 22, Indels: 18
0.71 0.16 0.13
Matches are distributed among these distances:
5 4 0.04
6 82 0.85
7 7 0.07
8 3 0.03
ACGTcount: A:0.20, C:0.19, G:0.12, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:81015457 original size:37 final size:37
Alignment explanation
Indices: 81015416--81015516 Score: 139
Period size: 37 Copynumber: 2.7 Consensus size: 37
81015406 ATTCTGTTAC
*
81015416 CTGATACTGATTCTGATTCTAATTTTGTCACCTAATT
1 CTGATTCTGATTCTGATTCTAATTTTGTCACCTAATT
* * * *
81015453 CTGATTCTGTTTCTGATTCTGATTCTGTCACCTGATT
1 CTGATTCTGATTCTGATTCTAATTTTGTCACCTAATT
* *
81015490 CTGATTCTGATTCTAATTCTCATTTTG
1 CTGATTCTGATTCTGATTCTAATTTTG
81015517 ATTCTAATTC
Statistics
Matches: 55, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 55 1.00
ACGTcount: A:0.19, C:0.20, G:0.13, T:0.49
Consensus pattern (37 bp):
CTGATTCTGATTCTGATTCTAATTTTGTCACCTAATT
Found at i:81015509 original size:31 final size:31
Alignment explanation
Indices: 81015394--81015509 Score: 115
Period size: 31 Copynumber: 3.5 Consensus size: 31
81015384 TTGCATTCAT
* * * *
81015394 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTAATTCTGTCACCTGATTCTG
*
81015425 ATTCTGATTCTAATTTTGTCACCTAATTCTGATTCTG
1 ATTCTGATTCTAATTCTGTCA-C-----CTGATTCTG
* *
81015462 TTTCTGATTCTGATTCTGTCACCTGATTCTG
1 ATTCTGATTCTAATTCTGTCACCTGATTCTG
81015493 ATTCTGATTCTAATTCT
1 ATTCTGATTCTAATTCT
81015510 CATTTTGATT
Statistics
Matches: 69, Mismatches: 10, Indels: 12
0.76 0.11 0.13
Matches are distributed among these distances:
31 41 0.59
32 1 0.01
36 1 0.01
37 26 0.38
ACGTcount: A:0.19, C:0.19, G:0.13, T:0.49
Consensus pattern (31 bp):
ATTCTGATTCTAATTCTGTCACCTGATTCTG
Found at i:81028470 original size:28 final size:28
Alignment explanation
Indices: 81028439--81028504 Score: 105
Period size: 30 Copynumber: 2.3 Consensus size: 28
81028429 CGGGTTAGGG
81028439 ACACGGGCGTGTAGTACACAGCCTGACC
1 ACACGGGCGTGTAGTACACAGCCTGACC
*
81028467 ACACGGACGTGTGTAGTACACAGCCTGACC
1 ACACGG--GCGTGTAGTACACAGCCTGACC
81028497 ACACGGGC
1 ACACGGGC
81028505 TTGTCCCTAG
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
28 7 0.21
30 27 0.79
ACGTcount: A:0.26, C:0.32, G:0.29, T:0.14
Consensus pattern (28 bp):
ACACGGGCGTGTAGTACACAGCCTGACC
Found at i:81031676 original size:40 final size:40
Alignment explanation
Indices: 81031610--81031776 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
81031600 AAATTGAATG
* * *
81031610 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
81031649 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
81031689 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
81031729 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
81031769 ATATCCGG
1 ATATCCGG
81031777 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:81039698 original size:40 final size:40
Alignment explanation
Indices: 81039632--81039798 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
81039622 AAATTGAATG
* * *
81039632 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
81039671 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
81039711 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
81039751 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
81039791 ATATCCGG
1 ATATCCGG
81039799 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:81047382 original size:22 final size:22
Alignment explanation
Indices: 81047328--81047443 Score: 115
Period size: 22 Copynumber: 5.1 Consensus size: 22
81047318 TCTTTGATAA
* *
81047328 TTAGCACGTTAGTGCTCTCTATT
1 TTAGCACATTAGTGCTCTCT-GT
81047351 TACTAGCACATTAGTGCTCTCTGT
1 T--TAGCACATTAGTGCTCTCTGT
* *
81047375 TTAGCACATTTGTGCTCTCTTT
1 TTAGCACATTAGTGCTCTCTGT
* *
81047397 TTAGCACATTTGTGCTCTTTGT
1 TTAGCACATTAGTGCTCTCTGT
* * * *
81047419 ATAGCACTTTAGTGATCTTTGT
1 TTAGCACATTAGTGCTCTCTGT
81047441 TTA
1 TTA
81047444 ATACTGCATA
Statistics
Matches: 80, Mismatches: 11, Indels: 5
0.83 0.11 0.05
Matches are distributed among these distances:
22 59 0.74
23 1 0.01
24 2 0.03
25 18 0.22
ACGTcount: A:0.18, C:0.20, G:0.16, T:0.46
Consensus pattern (22 bp):
TTAGCACATTAGTGCTCTCTGT
Found at i:81047414 original size:44 final size:46
Alignment explanation
Indices: 81047328--81047432 Score: 133
Period size: 44 Copynumber: 2.3 Consensus size: 46
81047318 TCTTTGATAA
*
81047328 TTAGCACGTTAGTGCTCTCTATTTACTAGCACATTAGTGCTCTCTGT
1 TTAGCACATTAGTGCTCTCTATTTA-TAGCACATTAGTGCTCTCTGT
* * *
81047375 TTAGCACATTTGTGCTCTCT-TTT-TAGCACATTTGTGCTCTTTGT
1 TTAGCACATTAGTGCTCTCTATTTATAGCACATTAGTGCTCTCTGT
* *
81047419 ATAGCACTTTAGTG
1 TTAGCACATTAGTG
81047433 ATCTTTGTTT
Statistics
Matches: 51, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
44 30 0.59
46 3 0.06
47 18 0.35
ACGTcount: A:0.18, C:0.21, G:0.17, T:0.44
Consensus pattern (46 bp):
TTAGCACATTAGTGCTCTCTATTTATAGCACATTAGTGCTCTCTGT
Found at i:81060619 original size:48 final size:48
Alignment explanation
Indices: 81060564--81060658 Score: 154
Period size: 48 Copynumber: 2.0 Consensus size: 48
81060554 ACGATGTCTC
* *
81060564 ATATCGATGCCAATGCTATATCCCAGATATGCTCTTACATGGGATCAA
1 ATATCGATGCCAATGCCATATCCCAGACATGCTCTTACATGGGATCAA
* *
81060612 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
1 ATATCGATGCCAATGCCATATCCCAGACATGCTCTTACATGGGATCA
81060659 CACATAACCC
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 43 1.00
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.27
Consensus pattern (48 bp):
ATATCGATGCCAATGCCATATCCCAGACATGCTCTTACATGGGATCAA
Found at i:81076556 original size:27 final size:26
Alignment explanation
Indices: 81076508--81076639 Score: 149
Period size: 27 Copynumber: 4.9 Consensus size: 26
81076498 GCGAGGCTGC
* *
81076508 CAGATATTGTGAC-GAAGTCACCAGAT
1 CAGATATTGTGGCAG-AGCCACCAGAT
81076534 ACAGATATTGTGGCAGAGCCACCAGAT
1 -CAGATATTGTGGCAGAGCCACCAGAT
* * * *
81076561 CATATAATCGTGGCATAGCCACCAGAA
1 CAGAT-ATTGTGGCAGAGCCACCAGAT
81076588 CAGATATATGTGGCAGAGCCACCAGAT
1 CAGATAT-TGTGGCAGAGCCACCAGAT
*
81076615 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
81076640 GACGCTTCCT
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
26 6 0.07
27 81 0.90
28 3 0.03
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAT
Found at i:81076608 original size:54 final size:54
Alignment explanation
Indices: 81076526--81076639 Score: 194
Period size: 54 Copynumber: 2.1 Consensus size: 54
81076516 GTGACGAAGT
*
81076526 CACCAGATACAGATATTGTGGCAGAGCCACCAGATCATATAATCGTGGCATAGC
1 CACCAGATACAGATATTGTGGCAGAGCCACCAGATCAGATAATCGTGGCATAGC
*
81076580 CACCAGA-ACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGC
1 CACCAGATACAGATAT-TGTGGCAGAGCCACCAGATCAGATAATCGTGGCATAGC
81076634 CACCAG
1 CACCAG
81076640 GACGCTTCCT
Statistics
Matches: 57, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
53 8 0.14
54 49 0.86
ACGTcount: A:0.34, C:0.25, G:0.23, T:0.18
Consensus pattern (54 bp):
CACCAGATACAGATATTGTGGCAGAGCCACCAGATCAGATAATCGTGGCATAGC
Found at i:81078282 original size:26 final size:26
Alignment explanation
Indices: 81078250--81078357 Score: 164
Period size: 26 Copynumber: 4.2 Consensus size: 26
81078240 TGAAATGCCC
81078250 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
* *
81078276 ATTATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
* *
81078302 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
81078328 ATCATGGAACATTTACCT-AACACATT
1 ATCATGGAACATTTACCTAAAC-CATT
81078354 ATCA
1 ATCA
81078358 ATTTGTATCA
Statistics
Matches: 74, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
25 2 0.03
26 72 0.97
ACGTcount: A:0.37, C:0.22, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:81084649 original size:40 final size:40
Alignment explanation
Indices: 81084590--81084797 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 40
81084580 CATTGGAATG
* * * *
81084590 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTACT
* **
81084630 ATATCCGGGCTAAAACCCGAAGGC-ATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTTACT
* * *
81084670 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTACT
* * *
81084710 AAATCCGGGTTAAGACCCGAAGGCAATTGTGCGAGTCACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTACT
* ** * * * * * *
81084750 ATAACCGGGCTTCGTCCCAAAGGCATTTGAGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTACT
81084790 ATATCCGG
1 ATATCCGG
81084798 TTAAATTTCG
Statistics
Matches: 138, Mismatches: 28, Indels: 4
0.81 0.16 0.02
Matches are distributed among these distances:
39 3 0.02
40 133 0.96
41 2 0.01
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTACT
Found at i:81084796 original size:80 final size:80
Alignment explanation
Indices: 81084594--81084802 Score: 224
Period size: 80 Copynumber: 2.6 Consensus size: 80
81084584 GGAATGATAT
* * *
81084594 CCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTAATTATATCCGGGCTAAAACCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAATTATATCCGGGTTAAAACCCGAAGGCATTCG
*** *
81084659 TGCGAGTTGTTATAT
66 TGCGAGTCACTATAA
* * ** * *
81084674 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATT-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAATTATATCCGGGTTAAAACCCGAAGGC-ATTC
81084738 GTGCGAGTCACTATAA
65 GTGCGAGTCACTATAA
** * * * *
81084754 CCGGGCTTCGTCCCAAAGGCATTTGAGCGAGTCATTATATCC-GGTTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAATTATATCCGGGTTAAA
81084803 TTTCGAAGGT
Statistics
Matches: 104, Mismatches: 24, Indels: 3
0.79 0.18 0.02
Matches are distributed among these distances:
79 6 0.06
80 95 0.91
81 3 0.03
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAATTATATCCGGGTTAAAACCCGAAGGCATTCG
TGCGAGTCACTATAA
Found at i:81086859 original size:27 final size:27
Alignment explanation
Indices: 81086811--81086969 Score: 184
Period size: 27 Copynumber: 5.9 Consensus size: 27
81086801 GCGAGGCTAC
* *
81086811 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
81086838 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
81086864 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
81086891 CAGATAATCGTGGCATAGCCACCAGA-A
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
*
81086918 CAGATATATGTGGCATAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
81086945 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
81086970 GACGTTTCCT
Statistics
Matches: 119, Mismatches: 5, Indels: 16
0.85 0.04 0.11
Matches are distributed among these distances:
26 10 0.08
27 104 0.87
28 5 0.04
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:81086904 original size:54 final size:54
Alignment explanation
Indices: 81086829--81086969 Score: 239
Period size: 54 Copynumber: 2.6 Consensus size: 54
81086819 GTGACGAAGT
*
81086829 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
* *
81086883 CACCAGATCAGATAATCGTGGCATAGCCACCAGAACAGATATATGTGGCATAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
81086937 CACCAGATCAGATAATTGTGGCATAGCCACCAG
1 CACCAGATCAGATAATTGTGGCATAGCCACCAG
81086970 GACGTTTCCT
Statistics
Matches: 82, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
53 5 0.06
54 77 0.94
ACGTcount: A:0.35, C:0.24, G:0.23, T:0.18
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
Found at i:81087406 original size:16 final size:15
Alignment explanation
Indices: 81087385--81087414 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
81087375 AAAATACCGA
81087385 CTTTTCGGCATTTTGG
1 CTTTTCGGC-TTTTGG
81087401 CTTTTCGGCTTTTG
1 CTTTTCGGCTTTTG
81087415 CCAATCTAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.03, C:0.20, G:0.23, T:0.53
Consensus pattern (15 bp):
CTTTTCGGCTTTTGG
Found at i:81088620 original size:26 final size:26
Alignment explanation
Indices: 81088589--81088696 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
81088579 TGAAATGCCC
*
81088589 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
81088615 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
81088641 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
81088667 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
81088693 ATCA
1 ATCA
81088697 ATTTTACCAT
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:81093796 original size:13 final size:13
Alignment explanation
Indices: 81093778--81093802 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
81093768 TTTAATTGAA
81093778 AATTTAATAAATT
1 AATTTAATAAATT
81093791 AATTTAATAAAT
1 AATTTAATAAAT
81093803 AATGTTTATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
AATTTAATAAATT
Found at i:81097562 original size:20 final size:20
Alignment explanation
Indices: 81097537--81097578 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
81097527 TGTAAACTTT
*
81097537 ATAAAATATATG-GTAAATTA
1 ATAAAATA-ATGTGTAAAATA
81097557 ATAAAATAATGTGTAAAATA
1 ATAAAATAATGTGTAAAATA
81097577 AT
1 AT
81097579 TTTTAGATGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 3 0.15
20 17 0.85
ACGTcount: A:0.57, C:0.00, G:0.10, T:0.33
Consensus pattern (20 bp):
ATAAAATAATGTGTAAAATA
Found at i:81098043 original size:4 final size:4
Alignment explanation
Indices: 81098036--81098095 Score: 120
Period size: 4 Copynumber: 15.0 Consensus size: 4
81098026 TAGATAATTA
81098036 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
81098084 ATGT ATGT ATGT
1 ATGT ATGT ATGT
81098096 TCTAGTGTTG
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 56 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
ATGT
Found at i:81103807 original size:23 final size:24
Alignment explanation
Indices: 81103755--81103811 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 24
81103745 AAATGATGAG
*
81103755 TATTTGATATATATATATATTTTAA
1 TATTTTAT-TATATATATATTTTAA
81103780 -A--TTATTATATATATA-TTTAA
1 TATTTTATTATATATATATTTTAA
81103800 TATTTTATTATA
1 TATTTTATTATA
81103812 CTTATATAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 8
0.76 0.03 0.22
Matches are distributed among these distances:
20 5 0.18
21 11 0.39
22 3 0.11
23 8 0.29
24 1 0.04
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (24 bp):
TATTTTATTATATATATATTTTAA
Found at i:81105925 original size:28 final size:29
Alignment explanation
Indices: 81105871--81105926 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
81105861 CTACAGGGGT
*
81105871 TTTCACATGGCCAAGCACACGCCCGTGTC
1 TTTCACACGGCCAAGCACACGCCCGTGTC
*
81105900 TTTCACACGGCCTAG-ACACGCCCGTGT
1 TTTCACACGGCCAAGCACACGCCCGTGT
81105927 GCTCACCCGT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 12 0.48
29 13 0.52
ACGTcount: A:0.20, C:0.38, G:0.21, T:0.21
Consensus pattern (29 bp):
TTTCACACGGCCAAGCACACGCCCGTGTC
Found at i:81107460 original size:94 final size:94
Alignment explanation
Indices: 81107337--81107647 Score: 303
Period size: 94 Copynumber: 3.3 Consensus size: 94
81107327 TGTGAGAGCC
* * *
81107337 AGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGAGACGAGGGCTAGTGTAAGACGTGTCTA
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-TTGAGACGAGTGCTAGTGTAAGACGTGTCTG
*
81107402 GGACATGCATCAGCCAC-ATTACGATAGCT
65 GGACATGCATCAGCCACTATAACGATAGCT
* * * *
81107431 AGTGTAAGACCATGAT-TGGGACATGGCATCAGCGTAGAGATGAGTGCCAGTGTAAGACGTGTCT
1 AGTGTAAGACCATG-TCTGGGACATGGCATCGGC-TTGAGACGAGTGCTAGTGTAAGACGTGTCT
* * * * * *
81107495 GGGACATGCATTAGCCTCAATAATGGTAGCC
64 GGGACATGCATCAGCCACTATAACGATAGCT
* * ** * * *
81107526 AGTGTAAGA-CGTGTCTGGGACAT-GCATCGGC-TAAG-CTTCGTGCTAGTTTAAAACATGTCTG
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGAGAC-GAGTGCTAGTGTAAGACGTGTCTG
*
81107587 GGACATGCATCAG-CACTTATACACGAGAGCT
65 GGACATGCATCAGCCAC-TATA-ACGATAGCT
* *
81107618 AGTGTAAGATCATGTTTGGGACATGGCATC
1 AGTGTAAGACCATGTCTGGGACATGGCATC
81107648 AACAACTTAA
Statistics
Matches: 175, Mismatches: 34, Indels: 16
0.78 0.15 0.07
Matches are distributed among these distances:
90 2 0.01
91 35 0.20
92 14 0.08
93 20 0.11
94 86 0.49
95 18 0.10
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (94 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGAGACGAGTGCTAGTGTAAGACGTGTCTGG
GACATGCATCAGCCACTATAACGATAGCT
Found at i:81107499 original size:47 final size:44
Alignment explanation
Indices: 81107329--81107600 Score: 163
Period size: 47 Copynumber: 5.9 Consensus size: 44
81107319 TTTGGTGATG
* * * *
81107329 TGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGAGA
1 TGAGTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGC--TAAGA
* * * * * * *
81107377 CGAGGGCTAGTGTAAGACGTGTCTAGGACATGCATCAGC-CACA
1 TGAGTGCCAGTGTAAGACATGTCTGGGACATGCATCAGCTAAGA
* *
81107420 TTACGATAGCTAGTGTAAGACCATGAT-TGGGACATGGCATCAGCGTAGAGA
1 TGA-G-T-GCCAGTGTAAGA-CATG-TCTGGGACAT-GCATCAGC-TA-AGA
* * *
81107471 TGAGTGCCAGTGTAAGACGTGTCTGGGACATGCATTAGCCTCAATAA
1 TGAGTGCCAGTGTAAGACATGTCTGGGACATGCATCAG-CT-AA-GA
* * *
81107518 TG-GTAGCCAGTGTAAGACGTGTCTGGGACATGCATCGGCTAAGC
1 TGAGT-GCCAGTGTAAGACATGTCTGGGACATGCATCAGCTAAGA
** * * *
81107562 TTCGTGCTAGTTTAAAACATGTCTGGGACATGCATCAGC
1 TGAGTGCCAGTGTAAGACATGTCTGGGACATGCATCAGC
81107601 ACTTATACAC
Statistics
Matches: 180, Mismatches: 29, Indels: 34
0.74 0.12 0.14
Matches are distributed among these distances:
43 3 0.02
44 31 0.17
45 4 0.02
46 32 0.18
47 70 0.39
48 34 0.19
49 1 0.01
50 1 0.01
51 4 0.02
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (44 bp):
TGAGTGCCAGTGTAAGACATGTCTGGGACATGCATCAGCTAAGA
Found at i:81114875 original size:47 final size:46
Alignment explanation
Indices: 81114761--81115120 Score: 155
Period size: 47 Copynumber: 7.6 Consensus size: 46
81114751 GTTATGTGAG
* *
81114761 AGCCAGTGTAAGACCATGTCTGGGACATGGCAT-AG--AAATTGATACGAG
1 AGCCAGTGTAAGA-CATGTCTGGGACATGG-ATCAGCCACA-TG--ACGAT
* * * *
81114809 CGCTAGTGTAAGACGTGTCTGGGACATGGATCAGCCACATTACGAT
1 AGCCAGTGTAAGACATGTCTGGGACATGGATCAGCCACATGACGAT
** * * *
81114855 AGCCAGTGTAAGACCATGTCTGGGACATGGCATTGGCGTAGA-GATGAGT
1 AGCCAGTGTAAGA-CATGTCTGGGACATGG-ATCAGC-CACATGACGA-T
* ** * ** * * * *
81114904 -GCCAGTTTAAGATGTATCTGGGACATACATCGGCCTCAATGATGGT
1 AGCCAGTGTAAGACATGTCTGGGACATGGATCAGCCAC-ATGACGAT
* * *
81114950 AGCCAGTGTAAGACATGTCTGGGACATGCATCAGCTA-A-G-C-TT
1 AGCCAGTGTAAGACATGTCTGGGACATGGATCAGCCACATGACGAT
* * * *
81114992 CATGCTAGTGTAAGACATGTCTGGGACATGCATCAG-CACTTATACACGAG
1 -A-GCCAGTGTAAGACATGTCTGGGACATGGATCAGCCAC--AT-GACGAT
* * * * * * *
81115042 ATCTAGTGTAAGACCGTGTCTAGGACATGGCATCGGCCTCGATGAAGAT
1 AGCCAGTGTAAGA-CATGTCTGGGACATGG-ATCAGCCAC-ATGACGAT
*
81115091 AGCCAGTGTAATACCATGTCTGGGACATGG
1 AGCCAGTGTAAGA-CATGTCTGGGACATGG
81115121 CATCGGCAAC
Statistics
Matches: 234, Mismatches: 56, Indels: 43
0.70 0.17 0.13
Matches are distributed among these distances:
42 1 0.00
43 2 0.01
44 33 0.14
45 1 0.00
46 25 0.11
47 75 0.32
48 41 0.18
49 48 0.21
50 6 0.03
51 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (46 bp):
AGCCAGTGTAAGACATGTCTGGGACATGGATCAGCCACATGACGAT
Found at i:81114924 original size:94 final size:95
Alignment explanation
Indices: 81114761--81114977 Score: 249
Period size: 94 Copynumber: 2.3 Consensus size: 95
81114751 GTTATGTGAG
* * * *
81114761 AGCCAGTGTAAGACCATGTCTGGGACATGGCATAGAAATTGATACGAGCGCTAGTGTAAGACGTG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATAGAAATAGAGACGAGCGCCAGTGTAAGACGTA
** *
81114826 TCTGGGACATGGATCAGCCAC-ATTACGAT
66 TCTGGGACATACATCAGCCACAATGACGAT
* *** * * * *
81114855 AGCCAGTGTAAGACCATGTCTGGGACATGGCATTGGCGTAGAGATGAGTGCCAGTTTAAGATGTA
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATAGAAATAGAGACGAGCGCCAGTGTAAGACGTA
* * * *
81114920 TCTGGGACATACATCGGCCTCAATGATGGT
66 TCTGGGACATACATCAGCCACAATGACGAT
81114950 AGCCAGTGTAAGA-CATGTCTGGGACATG
1 AGCCAGTGTAAGACCATGTCTGGGACATG
81114978 CATCAGCTAA
Statistics
Matches: 103, Mismatches: 19, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
94 85 0.83
95 18 0.17
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (95 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATAGAAATAGAGACGAGCGCCAGTGTAAGACGTA
TCTGGGACATACATCAGCCACAATGACGAT
Found at i:81119693 original size:4 final size:4
Alignment explanation
Indices: 81119686--81119784 Score: 153
Period size: 4 Copynumber: 24.8 Consensus size: 4
81119676 CAATCAATAA
* * * * *
81119686 AGAG AGAG AGAG AGGG AGGG AGAG AGAG GGAG GGAG AGAG AGGG AGAG
1 AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG
81119734 AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG
1 AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG
81119782 AGA
1 AGA
81119785 AGTAAATTCG
Statistics
Matches: 89, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 89 1.00
ACGTcount: A:0.45, C:0.00, G:0.55, T:0.00
Consensus pattern (4 bp):
AGAG
Found at i:81119708 original size:10 final size:10
Alignment explanation
Indices: 81119686--81119784 Score: 153
Period size: 10 Copynumber: 9.9 Consensus size: 10
81119676 CAATCAATAA
81119686 AGAGAGAGAG
1 AGAGAGAGAG
* *
81119696 AGAGGGAGGG
1 AGAGAGAGAG
*
81119706 AGAGAGAGGG
1 AGAGAGAGAG
*
81119716 AGGGAGAGAG
1 AGAGAGAGAG
*
81119726 AGGGAGAGAG
1 AGAGAGAGAG
81119736 AGAGAGAGAG
1 AGAGAGAGAG
81119746 AGAGAGAGAG
1 AGAGAGAGAG
81119756 AGAGAGAGAG
1 AGAGAGAGAG
81119766 AGAGAGAGAG
1 AGAGAGAGAG
81119776 AGAGAGAGA
1 AGAGAGAGA
81119785 AGTAAATTCG
Statistics
Matches: 83, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
10 83 1.00
ACGTcount: A:0.45, C:0.00, G:0.55, T:0.00
Consensus pattern (10 bp):
AGAGAGAGAG
Found at i:81119710 original size:14 final size:14
Alignment explanation
Indices: 81119686--81119784 Score: 153
Period size: 14 Copynumber: 7.1 Consensus size: 14
81119676 CAATCAATAA
81119686 AGAGAGAGAGAGAG
1 AGAGAGAGAGAGAG
* *
81119700 GGAGGGAGAGAGAG
1 AGAGAGAGAGAGAG
* *
81119714 GGAGGGAGAGAGAG
1 AGAGAGAGAGAGAG
*
81119728 GGAGAGAGAGAGAG
1 AGAGAGAGAGAGAG
81119742 AGAGAGAGAGAGAG
1 AGAGAGAGAGAGAG
81119756 AGAGAGAGAGAGAG
1 AGAGAGAGAGAGAG
81119770 AGAGAGAGAGAGAG
1 AGAGAGAGAGAGAG
81119784 A
1 A
81119785 AGTAAATTCG
Statistics
Matches: 81, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 81 1.00
ACGTcount: A:0.45, C:0.00, G:0.55, T:0.00
Consensus pattern (14 bp):
AGAGAGAGAGAGAG
Found at i:81128447 original size:26 final size:26
Alignment explanation
Indices: 81128399--81128474 Score: 73
Period size: 26 Copynumber: 2.9 Consensus size: 26
81128389 ACATATTTTC
* * *
81128399 TCAAAATTTTACGA-TGGGCAAAATTA
1 TCAAAATTTTACTAGT-GGTAAAATCA
*
81128425 TCAAAATTTTACTAGTGGTAAAATCG
1 TCAAAATTTTACTAGTGGTAAAATCA
* * *
81128451 TCAAAATTTTGCTTGGGGTAAAAT
1 TCAAAATTTTACTAGTGGTAAAAT
81128475 AGGGATAAGA
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
26 41 0.98
27 1 0.02
ACGTcount: A:0.38, C:0.11, G:0.17, T:0.34
Consensus pattern (26 bp):
TCAAAATTTTACTAGTGGTAAAATCA
Found at i:81132325 original size:40 final size:40
Alignment explanation
Indices: 81132289--81132518 Score: 374
Period size: 40 Copynumber: 5.8 Consensus size: 40
81132279 GGATATAGCT
*
81132289 ACTCGCTCAAATGCCTTCGGGACTTAGCCCGG-ATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA
**
81132329 GTTCGCACAAATGCCTTCGGGACTTAGCCCGG-ATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA
81132369 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
81132409 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
* *
81132449 ACTCGCACAAATGCCTTCGGAACTTAGCCCGGAATTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
*
81132489 ACTAGCACAAATGCCTTCGGGACTTAGCCC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCC
81132519 CGTTATCATC
Statistics
Matches: 180, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
40 178 0.99
41 2 0.01
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
Found at i:81132415 original size:80 final size:80
Alignment explanation
Indices: 81132263--81132518 Score: 385
Period size: 80 Copynumber: 3.2 Consensus size: 80
81132253 AAACCAAGTA
* * *
81132263 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATGCCTTCGGGACTTAGCCCGG-ATAT
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-T
**
81132325 AGTAGTTCGCACAAATG
64 AGTAACTCGCACAAATG
81132342 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAG
81132407 TAACTCGCACAAATG
66 TAACTCGCACAAATG
*
81132422 CCTTCGGGACTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTCGGAACTTAGCCCGGAATTA
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTA
* *
81132486 GTCACTAGCACAAATG
65 GTAACTCGCACAAATG
81132502 CCTTCGGGACTTAGCCC
1 CCTTCGGGACTTAGCCC
81132519 CGTTATCATC
Statistics
Matches: 165, Mismatches: 8, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
79 14 0.08
80 149 0.90
81 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAG
TAACTCGCACAAATG
Found at i:81140394 original size:40 final size:40
Alignment explanation
Indices: 81140332--81140586 Score: 369
Period size: 40 Copynumber: 6.5 Consensus size: 40
81140322 AAACCAAGTA
* * *
81140332 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
**
81140371 CCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
81140411 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
81140451 CCTTCGGGACTTAGCCCGGA-ATTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
*
81140491 CCTTCGGGACTTAGCCCGAAT-TAGT-ACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
81140529 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
81140569 CCTTCGGGACTTAGCCCG
1 CCTTCGGGACTTAGCCCG
81140587 TTATCATCCG
Statistics
Matches: 199, Mismatches: 10, Indels: 13
0.90 0.05 0.06
Matches are distributed among these distances:
38 32 0.16
39 22 0.11
40 145 0.73
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:81140564 original size:118 final size:120
Alignment explanation
Indices: 81140358--81140586 Score: 383
Period size: 118 Copynumber: 1.9 Consensus size: 120
81140348 GGATATAGCT
* * *
81140358 ACTCGCTCAAATGCCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACAAATGCCTTCGGGACTT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGAATATAGTAGCTCGCACAAATGCCTTCGGGACTT
*
81140423 AGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
66 AGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
81140478 ACTCGCACAAATGCCTTCGGGACTTAGCCCGAAT-TAGTA-CTCGCACAAATGCCTTCGGGACTT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGAATATAGTAGCTCGCACAAATGCCTTCGGGACTT
*
81140541 AGCCCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCG
66 AGCCCGGATA-TAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCG
81140587 TTATCATCCG
Statistics
Matches: 103, Mismatches: 5, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
117 1 0.01
118 65 0.63
119 5 0.05
120 32 0.31
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (120 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGAATATAGTAGCTCGCACAAATGCCTTCGGGACTT
AGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
Found at i:81146759 original size:40 final size:40
Alignment explanation
Indices: 81146714--81146880 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
81146704 CGGAATATAA
81146714 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
81146754 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
81146794 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
81146834 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
81146873 CCGGATAT
1 CCGGATAT
81146881 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:81150146 original size:49 final size:49
Alignment explanation
Indices: 81150090--81150476 Score: 693
Period size: 49 Copynumber: 7.9 Consensus size: 49
81150080 GGGTGTCACA
81150090 TTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACACT
1 TTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACACT
81150139 TTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACACT
1 TTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACACT
81150188 TTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACACT
1 TTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACACT
81150237 TTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACACT
1 TTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACACT
* *
81150286 TTCACATTCATCACTTCGGCCATTAGGCCTTATCACATATGTATACACT
1 TTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACACT
* *
81150335 TTCACATTCATCACATCTCGGCCATTAGGCCTTATCACATATATATACATT
1 TTCACATTCATCAC--GTCGGCCATTAGGCCTTATCACATATATATACACT
* *
81150386 TTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATGTATACATT
1 TTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACACT
*
81150435 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
1 TTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATAT
81150477 TATTATGTAC
Statistics
Matches: 327, Mismatches: 9, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
49 281 0.86
51 46 0.14
ACGTcount: A:0.28, C:0.28, G:0.10, T:0.34
Consensus pattern (49 bp):
TTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACACT
Found at i:81150409 original size:149 final size:147
Alignment explanation
Indices: 81150090--81150476 Score: 693
Period size: 149 Copynumber: 2.6 Consensus size: 147
81150080 GGGTGTCACA
*
81150090 TTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACGT
1 TTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACAT
*
81150155 CGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTA
66 CGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACCTCGGCCATTAGGCCTTA
81150220 TCACATATATATACACT
131 TCACATATATATACACT
*
81150237 TTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACTT
1 TTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACAT
*
81150302 CGGCCATTAGGCCTTATCACATATGTATACACTTTCACATTCATCACATCTCGGCCATTAGGCCT
66 CGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCAC--CTCGGCCATTAGGCCT
*
81150367 TATCACATATATATACATT
129 TATCACATATATATACACT
* *
81150386 TTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATGTATACATTTTCACATTCATCACAT
1 TTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACAT
81150451 CGGCCATTAGGCCTTATCACATATAT
66 CGGCCATTAGGCCTTATCACATATAT
81150477 TATTATGTAC
Statistics
Matches: 230, Mismatches: 8, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
147 110 0.48
149 120 0.52
ACGTcount: A:0.28, C:0.28, G:0.10, T:0.34
Consensus pattern (147 bp):
TTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACAT
CGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACCTCGGCCATTAGGCCTTA
TCACATATATATACACT
Found at i:81153379 original size:40 final size:40
Alignment explanation
Indices: 81153335--81153432 Score: 119
Period size: 40 Copynumber: 2.5 Consensus size: 40
81153325 TCGATTGTCC
* * *
81153335 TCGGGACATAGCCCGG-TTATAGTGATTCGCACAATTGCCT
1 TCGGGACATAGCCCGGATT-TAGTAACTCGCACAAATGCCT
*
81153375 TCGGGA-ATTAGCCTGGATTTAGTAACTCGCACAAATGCCT
1 TCGGGACA-TAGCCCGGATTTAGTAACTCGCACAAATGCCT
*
81153415 TCGGGACTTAGCCCGGAT
1 TCGGGACATAGCCCGGAT
81153433 ACCATTCGAA
Statistics
Matches: 49, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
39 1 0.02
40 46 0.94
41 2 0.04
ACGTcount: A:0.23, C:0.24, G:0.26, T:0.27
Consensus pattern (40 bp):
TCGGGACATAGCCCGGATTTAGTAACTCGCACAAATGCCT
Found at i:81154240 original size:40 final size:40
Alignment explanation
Indices: 81154176--81154567 Score: 685
Period size: 40 Copynumber: 9.8 Consensus size: 40
81154166 CCAGCATGAT
* * * *
81154176 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCATTAGCACGAA
** * *
81154216 TGCTCTTCAAAACTTAGTCTGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCATTAGCACGAA
81154256 TGCTCTTCGGAACTTAGTCCGGATACATCATTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCATTAGCACGAA
*
81154296 TGCTCTTCGGAACTTAGTCCGGATACATCAGTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCATTAGCACGAA
81154336 TGCTCTTCGGAACTTAGTCCGGATACATCATTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCATTAGCACGAA
*
81154376 TGCTCTTCGGAACTTAGTCCGGATACATCATTATCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCATTAGCACGAA
*
81154416 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCATTAGCACGAA
81154456 TGCTCTTCGGAACTTAGTCCGGATACATCATTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCATTAGCACGAA
81154496 TGCTCTTCGGAACTTAGTCCGGATACATCATTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCATTAGCACGAA
81154536 TGCTCTTCGGAACTTAGTCCGGATACATCATT
1 TGCTCTTCGGAACTTAGTCCGGATACATCATT
81154568 CTCAATTCTC
Statistics
Matches: 336, Mismatches: 16, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 336 1.00
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCATTAGCACGAA
Found at i:81156493 original size:37 final size:37
Alignment explanation
Indices: 81156443--81156597 Score: 267
Period size: 37 Copynumber: 4.2 Consensus size: 37
81156433 GTCTTACCAA
81156443 GACATAATCTCCACACGTAGTCATCGGGTCGTACCCG
1 GACATAATCTCCACACGTAGTCATCGGGTCGTACCCG
*
81156480 GACATAATCTCCACACGTAGTCATCGGGTCGTACCTG
1 GACATAATCTCCACACGTAGTCATCGGGTCGTACCCG
*
81156517 GACATAATCTCCACACGCAGTCATCGGGTCGTACCCG
1 GACATAATCTCCACACGTAGTCATCGGGTCGTACCCG
81156554 GACATAATCTCCACACGTAGTCATCGGGTC-TCACCCG
1 GACATAATCTCCACACGTAGTCATCGGGTCGT-ACCCG
81156591 GAACATA
1 G-ACATA
81156598 TTTCCAAGTT
Statistics
Matches: 112, Mismatches: 4, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
36 1 0.01
37 106 0.95
38 5 0.04
ACGTcount: A:0.26, C:0.32, G:0.21, T:0.21
Consensus pattern (37 bp):
GACATAATCTCCACACGTAGTCATCGGGTCGTACCCG
Found at i:81156880 original size:48 final size:49
Alignment explanation
Indices: 81156646--81156961 Score: 564
Period size: 49 Copynumber: 6.5 Consensus size: 49
81156636 ATTCACATTA
81156646 GCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACGTCG
1 GCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACGTCG
*
81156695 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACGTCG
1 GCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACGTCG
81156744 GCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACGTCG
1 GCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACGTCG
* *
81156793 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACGTCG
81156842 GCCATTAGGCCTTAT-ACATATATATACATTTTCACATTCATCACGTCG
1 GCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACGTCG
* * *
81156890 GCCATTAGGCCTTATCACATATGTATACA-TTTCACATTCATCACATCA
1 GCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACGTCG
81156938 GCCATTAGGCCTTATCACATATAT
1 GCCATTAGGCCTTATCACATATAT
81156962 TATTATGTAC
Statistics
Matches: 256, Mismatches: 10, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
48 86 0.34
49 170 0.66
ACGTcount: A:0.29, C:0.27, G:0.10, T:0.34
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACGTCG
Found at i:81164333 original size:40 final size:39
Alignment explanation
Indices: 81164275--81164416 Score: 135
Period size: 40 Copynumber: 3.6 Consensus size: 39
81164265 GGATATAGCG
* * * *
81164275 ACTCGCTCGATTGTCTTCGGGACATAGCCCGGTTATAGTG
1 ACTCGCACAATTGCCTTCGGGACATAGCCCGGTT-TAGTA
* *
81164315 ATTCGCACAATTGCCTTCGGGA-ATTAGCCCGGATTTAATA
1 ACTCGCACAATTGCCTTCGGGACA-TAGCCCGG-TTTAGTA
* * *
81164355 ACTCGCACGAA-TGCCTTCGGGACTTAACCCGGTTTTGGTA
1 ACTCGCAC-AATTGCCTTCGGGACATAGCCCGG-TTTAGTA
*
81164395 ACTCGCACAAATGCCTTCGGGA
1 ACTCGCACAATTGCCTTCGGGA
81164417 GTTGACCCGG
Statistics
Matches: 85, Mismatches: 12, Indels: 10
0.79 0.11 0.09
Matches are distributed among these distances:
39 3 0.04
40 78 0.92
41 4 0.05
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (39 bp):
ACTCGCACAATTGCCTTCGGGACATAGCCCGGTTTAGTA
Found at i:81164387 original size:80 final size:80
Alignment explanation
Indices: 81164275--81164431 Score: 199
Period size: 80 Copynumber: 2.0 Consensus size: 80
81164265 GGATATAGCG
* * * * * * *
81164275 ACTCGCTCGATTGTCTTCGGGACATAGCCCGGTTATAGTGATTCGCACAATTGCCTTCGGGAATT
1 ACTCGCACGAATGCCTTCGGGACATAACCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATT
81164340 -AGCCCGGATTTAATA
66 GA-CCCGGATTTAATA
* * * *
81164355 ACTCGCACGAATGCCTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGAGTT
1 ACTCGCACGAATGCCTTCGGGACATAACCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATT
81164420 GACCCGGATTTA
66 GACCCGGATTTA
81164432 GTCGCTTAGC
Statistics
Matches: 65, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
80 64 0.98
81 1 0.02
ACGTcount: A:0.22, C:0.25, G:0.24, T:0.28
Consensus pattern (80 bp):
ACTCGCACGAATGCCTTCGGGACATAACCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATT
GACCCGGATTTAATA
Found at i:81164425 original size:40 final size:39
Alignment explanation
Indices: 81164317--81164431 Score: 140
Period size: 40 Copynumber: 2.9 Consensus size: 39
81164307 TTATAGTGAT
*
81164317 TCGCACAATTGCCTTCGGGAATTAGCCCGGATTTAATAAC
1 TCGCACAAATGCCTTCGGGAATTA-CCCGGATTTAATAAC
* * * **
81164357 TCGCACGAATGCCTTCGGGACTTAACCCGGTTTTGGTAAC
1 TCGCACAAATGCCTTCGGGAATT-ACCCGGATTTAATAAC
*
81164397 TCGCACAAATGCCTTCGGGAGTTGACCCGGATTTA
1 TCGCACAAATGCCTTCGGGAATT-ACCCGGATTTA
81164432 GTCGCTTAGC
Statistics
Matches: 63, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
40 62 0.98
41 1 0.02
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (39 bp):
TCGCACAAATGCCTTCGGGAATTACCCGGATTTAATAAC
Found at i:81166843 original size:90 final size:90
Alignment explanation
Indices: 81166690--81166901 Score: 239
Period size: 90 Copynumber: 2.4 Consensus size: 90
81166680 CACCAAATAG
* * * *
81166690 GGTGCCAAAGCCATGTCCCAGACATGGTCTTACATGGAACTACACATTGATGTCATATCCCAGAT
1 GGTGCCAAAGCCATGTCCCAGACATGGTCTTAAACGGAACTACACATTGATGCCATATCCCAGAC
81166755 ATGGTCTTATACAAAGTCTCGAATC
66 ATGGTCTTATACAAAGTCTCGAATC
* * * * * *
81166780 GGTGCCGACGCCATGTCCCCGACATGGTCTTAAACGAGACCT-CATATTGATGCCATGTCCCAGA
1 GGTGCCAAAGCCATGTCCCAGACATGGTCTTAAACG-GAACTACACATTGATGCCATATCCCAGA
* **
81166844 CATGGTCTTATACGAAA-TCACTTATC
65 CATGGTCTTATAC-AAAGTCTCGAATC
* * * *
81166870 GATGCCAAAGCCATATCCCTGATATGGTCTTA
1 GGTGCCAAAGCCATGTCCCAGACATGGTCTTA
81166902 CACAAGATCG
Statistics
Matches: 101, Mismatches: 19, Indels: 4
0.81 0.15 0.03
Matches are distributed among these distances:
90 94 0.93
91 7 0.07
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (90 bp):
GGTGCCAAAGCCATGTCCCAGACATGGTCTTAAACGGAACTACACATTGATGCCATATCCCAGAC
ATGGTCTTATACAAAGTCTCGAATC
Found at i:81166874 original size:42 final size:42
Alignment explanation
Indices: 81166789--81166876 Score: 113
Period size: 42 Copynumber: 2.1 Consensus size: 42
81166779 CGGTGCCGAC
* * * *
81166789 GCCATGTCCCCGACATGGTCTTAAACGAGACCTCATATTGAT
1 GCCATGTCCCAGACATGGTCTTAAACGAAACCACATATCGAT
* * *
81166831 GCCATGTCCCAGACATGGTCTTATACGAAATCACTTATCGAT
1 GCCATGTCCCAGACATGGTCTTAAACGAAACCACATATCGAT
81166873 GCCA
1 GCCA
81166877 AAGCCATATC
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.26
Consensus pattern (42 bp):
GCCATGTCCCAGACATGGTCTTAAACGAAACCACATATCGAT
Found at i:81168072 original size:51 final size:51
Alignment explanation
Indices: 81167988--81168084 Score: 160
Period size: 51 Copynumber: 1.9 Consensus size: 51
81167978 CGGATACACG
* *
81167988 GTGGCCTTCACATAGTACCACCCTTGTAGCCAAAGCTATTTTATTCACAAA
1 GTGGACTTCACATAGTACCACACTTGTAGCCAAAGCTATTTTATTCACAAA
81168039 GTGGACTTCACATAGTACCACACTTGT-GTCCAAAGCTATTTTATTC
1 GTGGACTTCACATAGTACCACACTTGTAG-CCAAAGCTATTTTATTC
81168085 CTAAGGTTCA
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
50 1 0.02
51 42 0.98
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (51 bp):
GTGGACTTCACATAGTACCACACTTGTAGCCAAAGCTATTTTATTCACAAA
Found at i:81168171 original size:28 final size:28
Alignment explanation
Indices: 81168108--81168202 Score: 117
Period size: 28 Copynumber: 3.5 Consensus size: 28
81168098 GGGAAATTTC
81168108 TCACTTAGCACAATGCCATGGACTTATT
1 TCACTTAGCACAATGCCATGGACTTATT
* * * *
81168136 TTATTTAGCACATTGTCATGGACTTATT
1 TCACTTAGCACAATGCCATGGACTTATT
*
81168164 TCACTTAG----ATGCCATGGTCTTATT
1 TCACTTAGCACAATGCCATGGACTTATT
81168188 TCACTTAGCACAATG
1 TCACTTAGCACAATG
81168203 TCATATCCTA
Statistics
Matches: 54, Mismatches: 9, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
24 21 0.39
28 33 0.61
ACGTcount: A:0.26, C:0.21, G:0.15, T:0.38
Consensus pattern (28 bp):
TCACTTAGCACAATGCCATGGACTTATT
Found at i:81169893 original size:4 final size:4
Alignment explanation
Indices: 81169884--81169910 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
81169874 TGTTTTGGTA
81169884 TATG TATG TATG TATG TATG TATG TAT
1 TATG TATG TATG TATG TATG TATG TAT
81169911 TAAGTTCATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.26, C:0.00, G:0.22, T:0.52
Consensus pattern (4 bp):
TATG
Found at i:81172503 original size:67 final size:65
Alignment explanation
Indices: 81172306--81172512 Score: 192
Period size: 63 Copynumber: 3.2 Consensus size: 65
81172296 CATAATTTTG
* * * * *
81172306 GCTCTCTTGTAC-ACATGGTG-AACACTTAGTACCACCCATGTGACCTAGC--CAGTTTATCTCG
1 GCTCTCTTGT-CTACATGGTGCTACACATAGAACCACCCATGCGACCTAGCTACA-TATATCTCG
81172367 TA
64 TA
* * * * *
81172369 GCTCTCTTGTCTACATGGTGTCCTTCACCTGGAACCACGCATGCGACCTAGCTACATATATCCCG
1 GCTCTCTTGTCTACATGGTG--CTACACATAGAACCACCCATGCGACCTAGCTACATATATCTCG
81172434 TA
64 TA
* *
81172436 GCTCTCTTGTCTACATGG-G-TACACATAGTATCACCCATGCGACCTAGCTACATCATAATGTCT
1 GCTCTCTTGTCTACATGGTGCTACACATAGAACCACCCATGCGACCTAGCTACAT-AT-A--TCT
81172499 CGTA
62 CGTA
81172503 GCTCTCTTGT
1 GCTCTCTTGT
81172513 ACACATGATG
Statistics
Matches: 118, Mismatches: 16, Indels: 16
0.79 0.11 0.11
Matches are distributed among these distances:
62 1 0.01
63 46 0.39
64 2 0.02
65 1 0.01
66 23 0.19
67 43 0.36
68 2 0.02
ACGTcount: A:0.22, C:0.30, G:0.17, T:0.30
Consensus pattern (65 bp):
GCTCTCTTGTCTACATGGTGCTACACATAGAACCACCCATGCGACCTAGCTACATATATCTCGTA
Found at i:81177122 original size:68 final size:65
Alignment explanation
Indices: 81176906--81177115 Score: 205
Period size: 67 Copynumber: 3.2 Consensus size: 65
81176896 CACATAATTT
* * * * *
81176906 TAGCTCTCTTGTAC-ACATGGTGAACACTTAGTACCACCCATGTGACCTAGC--CAGTTTA-TCT
1 TAGCTCTCTTGT-CTACATGGTGTACACATAGTACCATCCATGCGACCTAGCTACA-TATATTCT
81176967 CG
64 CG
* * * * *
81176969 TAGCTCTCTTGTCTACATGGTGTCCTTCACCTGGAACCATGCATGCGACCTAGCTACATATA-TC
1 TAGCTCTCTTGTCTACATGGTG---TACACATAGTACCATCCATGCGACCTAGCTACATATATTC
*
81177033 CCG
63 TCG
*
81177036 TAGCTCTCTTGTCTACATGGTGTACACATAGTATCATCCATGCGACCTAGCTACATCATAATGTC
1 TAGCTCTCTTGTCTACATGGTGTACACATAGTACCATCCATGCGACCTAGCTACAT-AT-AT-TC
81177101 TCG
63 TCG
81177104 TAGCTCTCTTGT
1 TAGCTCTCTTGT
81177116 ACACATGATG
Statistics
Matches: 120, Mismatches: 17, Indels: 15
0.79 0.11 0.10
Matches are distributed among these distances:
62 1 0.01
63 20 0.17
64 28 0.23
65 2 0.02
66 22 0.18
67 29 0.24
68 18 0.15
ACGTcount: A:0.22, C:0.29, G:0.17, T:0.32
Consensus pattern (65 bp):
TAGCTCTCTTGTCTACATGGTGTACACATAGTACCATCCATGCGACCTAGCTACATATATTCTCG
Found at i:81179229 original size:39 final size:39
Alignment explanation
Indices: 81179175--81179409 Score: 402
Period size: 39 Copynumber: 6.1 Consensus size: 39
81179165 ATGCAAGACA
81179175 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
81179214 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
81179253 CTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
81179292 CTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
81179331 CTGGAAATGTATCCGGGC-AAAGT-CCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
81179368 CTGGAAATGTATCCGGGTTAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
81179407 CTG
1 CTG
81179410 ATAATATAAT
Statistics
Matches: 189, Mismatches: 5, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
37 31 0.16
38 10 0.05
39 148 0.78
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:81185058 original size:39 final size:39
Alignment explanation
Indices: 81185014--81185363 Score: 598
Period size: 39 Copynumber: 9.1 Consensus size: 39
81185004 ATGCAAGACA
81185014 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
81185053 CTGGAAATGTATCCGGGCTAAAGTCTCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* * *
81185092 CTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCATG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
81185131 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
81185170 CTGGAAATGTATCCGGGCTAAAGTCCCGCA-GCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
81185208 CTGGAAATATATCCGGGC-AAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
81185246 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
81185285 CTGGAAATGTATCCGGGCCAAAGT-CCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
81185323 CTGGAAATGTATCCGGGTTAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
81185362 CT
1 CT
81185364 ATAATATAAT
Statistics
Matches: 294, Mismatches: 14, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
37 11 0.04
38 86 0.29
39 197 0.67
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:81195209 original size:22 final size:24
Alignment explanation
Indices: 81195172--81195215 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
81195162 ATCCTTATTT
*
81195172 AATTAGTATAAATATA-TATTTGA
1 AATTAGTAAAAATATATTATTTGA
81195195 AATTA-TAAAAATATATTATTT
1 AATTAGTAAAAATATATTATTT
81195216 AATAAATTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (24 bp):
AATTAGTAAAAATATATTATTTGA
Found at i:81195277 original size:2 final size:2
Alignment explanation
Indices: 81195270--81195301 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
81195260 GTGTTTTAAA
81195270 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
81195302 TAGTTTTATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:81196270 original size:19 final size:19
Alignment explanation
Indices: 81196230--81196279 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
81196220 TAATAAAATA
* *
81196230 TTTAATATTATATTTTTAT
1 TTTAATAATATATTTTAAT
81196249 TTTAATAATA-ATTTTAAGT
1 TTTAATAATATATTTTAA-T
81196268 TTTAAATAATAT
1 TTT-AATAATAT
81196280 TCTTAATATA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
18 6 0.23
19 13 0.50
20 7 0.27
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (19 bp):
TTTAATAATATATTTTAAT
Found at i:81196354 original size:24 final size:23
Alignment explanation
Indices: 81196322--81196379 Score: 80
Period size: 23 Copynumber: 2.5 Consensus size: 23
81196312 TATTTTAATA
81196322 ATAAATATTTTATAGTATAAAAAT
1 ATAAATATTTTA-AGTATAAAAAT
* *
81196346 ATAAATATTTTAATTATATAAAT
1 ATAAATATTTTAAGTATAAAAAT
*
81196369 ATGAATATTTT
1 ATAAATATTTT
81196380 TTTAAATCAT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
23 19 0.61
24 12 0.39
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (23 bp):
ATAAATATTTTAAGTATAAAAAT
Found at i:81197235 original size:2 final size:2
Alignment explanation
Indices: 81197228--81197262 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
81197218 ACCGGACCCT
81197228 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
81197263 GATACGTGAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:81201643 original size:30 final size:30
Alignment explanation
Indices: 81201607--81201766 Score: 213
Period size: 29 Copynumber: 5.5 Consensus size: 30
81201597 GACAAGATTG
* * * * *
81201607 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
* *
81201637 GCACTAAGTGTGCGAGTTTG---ATTATACA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
81201665 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
81201694 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
81201724 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
81201753 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
81201767 GATTCACTAT
Statistics
Matches: 120, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 23 0.19
29 48 0.40
30 45 0.38
31 2 0.02
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.27
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:81201735 original size:59 final size:57
Alignment explanation
Indices: 81201607--81201766 Score: 214
Period size: 59 Copynumber: 2.8 Consensus size: 57
81201597 GACAAGATTG
* * * * * *
81201607 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATACA
1 GCACTAAGTGTGCGAGCTGAAAA-TATATAGCACTAAGTGTGCGAGTCTGATTATACA
*
81201665 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAG-CTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTG---ATTATACA
81201724 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
81201767 GATTCACTAT
Statistics
Matches: 92, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 20 0.22
59 50 0.54
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.27
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTGATTATACA
Found at i:81209612 original size:30 final size:30
Alignment explanation
Indices: 81209576--81209735 Score: 213
Period size: 29 Copynumber: 5.5 Consensus size: 30
81209566 GACAAGATTG
* * * * *
81209576 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
* *
81209606 GCACTAAGTGTGCGAGTTTG---ATTATACA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
81209634 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
81209663 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
81209693 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
81209722 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
81209736 GATTCACTAT
Statistics
Matches: 120, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 23 0.19
29 48 0.40
30 45 0.38
31 2 0.02
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.27
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:81209704 original size:59 final size:57
Alignment explanation
Indices: 81209576--81209735 Score: 214
Period size: 59 Copynumber: 2.8 Consensus size: 57
81209566 GACAAGATTG
* * * * * *
81209576 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATACA
1 GCACTAAGTGTGCGAGCTGAAAA-TATATAGCACTAAGTGTGCGAGTCTGATTATACA
*
81209634 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAG-CTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTG---ATTATACA
81209693 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
81209736 GATTCACTAT
Statistics
Matches: 92, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 20 0.22
59 50 0.54
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.27
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTGATTATACA
Found at i:81211685 original size:40 final size:40
Alignment explanation
Indices: 81211603--81211779 Score: 180
Period size: 40 Copynumber: 4.5 Consensus size: 40
81211593 CGGATGATAA
* * ** *
81211603 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGCTAGAT
* * * *
81211643 CCGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTAGAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTG-CTAGAT
* *
81211683 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGCTAGAT
* * * *
81211723 CTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGCTAGAT
81211763 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
81211780 ATACTTGGGT
Statistics
Matches: 116, Mismatches: 18, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
38 1 0.01
39 15 0.13
40 98 0.84
41 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGCTAGAT
Found at i:81211741 original size:80 final size:80
Alignment explanation
Indices: 81211603--81211779 Score: 234
Period size: 80 Copynumber: 2.2 Consensus size: 80
81211593 CGGATGATAA
* * * *
81211603 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTATGTCCCGAAGGCATTTA
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTA
*
81211668 TGCTAG-TGATTAGAT
66 TGCGAGTTG-TTAGAT
* * *
81211683 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCTGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTA
*
81211748 TGCGAGTTGTTATAT
66 TGCGAGTTGTTAGAT
81211763 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
81211780 ATACTTGGGT
Statistics
Matches: 86, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
78 1 0.01
79 13 0.15
80 70 0.81
81 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTA
TGCGAGTTGTTAGAT
Found at i:81212047 original size:22 final size:22
Alignment explanation
Indices: 81212007--81212048 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
81211997 GAATGTGCAT
*
81212007 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
81212029 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
81212049 TCAAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:81213338 original size:10 final size:11
Alignment explanation
Indices: 81213305--81213339 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
81213295 CTAGAGAAGC
81213305 TTCTTGGAATT
1 TTCTTGGAATT
*
81213316 TTCTTGAAATT
1 TTCTTGGAATT
81213327 TT-TTGGAATT
1 TTCTTGGAATT
81213337 TTC
1 TTC
81213340 AGCTCATTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 9 0.43
11 12 0.57
ACGTcount: A:0.20, C:0.09, G:0.14, T:0.57
Consensus pattern (11 bp):
TTCTTGGAATT
Found at i:81215500 original size:57 final size:58
Alignment explanation
Indices: 81215437--81215555 Score: 159
Period size: 57 Copynumber: 2.1 Consensus size: 58
81215427 TTTTTCAAGT
* * *
81215437 CATTTTCATTTTCATTTTAGAGAAAACCACATTCATTTCCAAATGATTCC-ATTTCTC
1 CATTTTCAATTTCATTTTAGAGAAAACCACAATCATTTCCAAAAGATTCCTATTTCTC
* * * * *
81215494 CATTTTCAATTTCGTTTTAGGGAAAACCATAATCATTTCCAAAAGTTTCCTATTTCTT
1 CATTTTCAATTTCATTTTAGAGAAAACCACAATCATTTCCAAAAGATTCCTATTTCTC
81215552 CATT
1 CATT
81215556 CACCATTTCT
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
57 43 0.81
58 10 0.19
ACGTcount: A:0.29, C:0.21, G:0.07, T:0.43
Consensus pattern (58 bp):
CATTTTCAATTTCATTTTAGAGAAAACCACAATCATTTCCAAAAGATTCCTATTTCTC
Found at i:81221487 original size:23 final size:23
Alignment explanation
Indices: 81221473--81221558 Score: 73
Period size: 23 Copynumber: 3.6 Consensus size: 23
81221463 TAAAATGACA
81221473 AAAATTAAAATAATAATAATAAC
1 AAAATTAAAATAATAATAATAAC
* * *
81221496 AACATTAAAACAAATAATAATAAG
1 AAAATTAAAA-TAATAATAATAAC
** *
81221520 AAGAAACAAATGATAATAAGAATAAC
1 AA-AATTAAA--ATAATAATAATAAC
*
81221546 AAAAATAAAATAA
1 AAAATTAAAATAA
81221559 CAAATAAAAA
Statistics
Matches: 49, Mismatches: 10, Indels: 8
0.73 0.15 0.12
Matches are distributed among these distances:
23 13 0.27
24 13 0.27
25 10 0.20
26 12 0.24
27 1 0.02
ACGTcount: A:0.70, C:0.06, G:0.05, T:0.20
Consensus pattern (23 bp):
AAAATTAAAATAATAATAATAAC
Found at i:81221528 original size:20 final size:19
Alignment explanation
Indices: 81221502--81221553 Score: 70
Period size: 20 Copynumber: 2.7 Consensus size: 19
81221492 TAACAACATT
81221502 AAAACAAATAATAATAAGA
1 AAAACAAATAATAATAAGA
*
81221521 AGAAACAAATGATAATAAGA
1 A-AAACAAATAATAATAAGA
*
81221541 ATAACAAA-AATAA
1 AAAACAAATAATAA
81221554 AATAACAAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
18 4 0.14
19 7 0.24
20 18 0.62
ACGTcount: A:0.71, C:0.06, G:0.08, T:0.15
Consensus pattern (19 bp):
AAAACAAATAATAATAAGA
Found at i:81221557 original size:20 final size:19
Alignment explanation
Indices: 81221502--81221571 Score: 52
Period size: 20 Copynumber: 3.5 Consensus size: 19
81221492 TAACAACATT
81221502 AAAACAAATAATAATAAGAAG
1 AAAA-AAATAA-AATAAGAAG
* * *
81221523 AAACAAATGATAATAAGAAT
1 AAAAAAAT-AAAATAAGAAG
*
81221543 AACAAAAATAAAATAACAA-
1 AA-AAAAATAAAATAAGAAG
*
81221562 ATAAAAATAA
1 AAAAAAATAA
81221572 CTATAATGAG
Statistics
Matches: 40, Mismatches: 7, Indels: 7
0.74 0.13 0.13
Matches are distributed among these distances:
18 8 0.20
19 1 0.03
20 22 0.55
21 9 0.22
ACGTcount: A:0.73, C:0.06, G:0.06, T:0.16
Consensus pattern (19 bp):
AAAAAAATAAAATAAGAAG
Found at i:81221559 original size:14 final size:14
Alignment explanation
Indices: 81221534--81221572 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
81221524 AACAAATGAT
81221534 AATAAGAATAACAAA
1 AATAA-AATAACAAA
81221549 AATAAAATAACAAA
1 AATAAAATAACAAA
*
81221563 TA-AAAATAAC
1 AATAAAATAAC
81221573 TATAATGAGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 8 0.35
14 10 0.43
15 5 0.22
ACGTcount: A:0.74, C:0.08, G:0.03, T:0.15
Consensus pattern (14 bp):
AATAAAATAACAAA
Done.