Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 258 of 318
Found at i:81476747 original size:36 final size:36
Alignment explanation
Indices: 81476703--81476771 Score: 129
Period size: 36 Copynumber: 1.9 Consensus size: 36
81476693 CAAGATTGCA
81476703 TATCATATCTAAGATTGCATATCATATCTAAGAGTG
1 TATCATATCTAAGATTGCATATCATATCTAAGAGTG
*
81476739 TATCATATCTAATATTGCATATCATATCTAAGA
1 TATCATATCTAAGATTGCATATCATATCTAAGA
81476772 TTGCATATTC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.38, C:0.14, G:0.10, T:0.38
Consensus pattern (36 bp):
TATCATATCTAAGATTGCATATCATATCTAAGAGTG
Found at i:81477445 original size:84 final size:84
Alignment explanation
Indices: 81477212--81477840 Score: 1030
Period size: 84 Copynumber: 7.6 Consensus size: 84
81477202 AATCATCTTT
*
81477212 GATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGTGAGTCGTCATCGATCTGCT
1 GATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTC-T--TCGATCTGCT
81477277 CCACTACTGCTTAGGGAGATAA
63 CCACTACTGCTTAGGGAGATAA
*
81477299 GATCTGC-----GAACCTGTTACCCTACTGCTTA-GGGATTAAGGCGAGTCTTCGATCTGCTCCA
1 GATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCA
*
81477358 CTACTGCTTAAGGAGATAA
66 CTACTGCTTAGGGAGATAA
*
81477377 GATCTGCAAATTTAACCTGTTACCCTACCGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCA
1 GATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCA
81477442 CTACTGCTTAGGGAGATAA
66 CTACTGCTTAGGGAGATAA
*
81477461 GATTTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCA
1 GATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCA
81477526 CTACTGCTTAGGGAGATAA
66 CTACTGCTTAGGGAGATAA
81477545 GATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCGTCGTCGATCTGCT
1 GATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTC-T--TCGATCTGCT
* *
81477610 CCACTACTTCTTAGAGAGATAA
63 CCACTACTGCTTAGGGAGATAA
*
81477632 GATCTG-----TGAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCA
1 GATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCA
81477692 CTACTGCTTAGGGAGATAA
66 CTACTGCTTAGGGAGATAA
* *
81477711 GATCTGCAAATTTAACCTATTACCCTACTGCTTAGGGGATTAAGGTGAGTCTTCGATCTGCTCCA
1 GATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCA
81477776 CTACTGCTTAGGGAGATAA
66 CTACTGCTTAGGGAGATAA
81477795 GATCTGCAAATTTAACCTGTTA-CCTACTGCTTAGGGGATTAAGGCG
1 GATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCG
81477841 CTGAATTTTG
Statistics
Matches: 509, Mismatches: 19, Indels: 32
0.91 0.03 0.06
Matches are distributed among these distances:
78 38 0.07
79 36 0.07
80 1 0.00
81 16 0.03
82 60 0.12
83 43 0.08
84 271 0.53
85 1 0.00
87 43 0.08
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (84 bp):
GATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCA
CTACTGCTTAGGGAGATAA
Found at i:81477492 original size:43 final size:42
Alignment explanation
Indices: 81477358--81477830 Score: 189
Period size: 41 Copynumber: 11.3 Consensus size: 42
81477348 ATCTGCTCCA
*
81477358 CTACTGCTTAAGGAGATAAGATCTGCAAATTTAACCTGTTACC
1 CTACTGCTTAGGGAGATAAGAT-TGCAAATTTAACCTGTTACC
* * * * * *
81477401 CTACCGCTTAGGG-GATTAAG---GCGAGTCTTCGATCTGCT-CC
1 CTACTGCTTAGGGAGA-TAAGATTGCAAAT-TT-AACCTGTTACC
81477441 ACTACTGCTTAGGGAGATAAGATTTGCAAATTTAACCTGTTACC
1 -CTACTGCTTAGGGAGATAAGA-TTGCAAATTTAACCTGTTACC
* * * * *
81477485 CTACTGCTTAGGG-GATTAAG---GCGAGTCTTCGATCTGCT-CC
1 CTACTGCTTAGGGAGA-TAAGATTGCAAAT-TT-AACCTGTTACC
81477525 ACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACC
1 -CTACTGCTTAGGGAGATAAGAT-TGCAAATTTAACCTGTTACC
* * * * *
81477569 CTACTGCTTAGGG-GATTAAG---GCGAGTCGTCGTCGATCTGCT-CC
1 CTACTGCTTAGGGAGA-TAAGATTGCAAAT--T--T-AACCTGTTACC
* * *
81477612 ACTACTTCTTAGAGAGATAAGA-T-C---TGTGAACCTGTTACC
1 -CTACTGCTTAGGGAGATAAGATTGCAAAT-TTAACCTGTTACC
* * * * *
81477651 CTACTGCTTAGGG-GATTAAG---GCGAGTCTTCGATCTGCT-CC
1 CTACTGCTTAGGGAGA-TAAGATTGCAAAT-TT-AACCTGTTACC
*
81477691 ACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTATTACC
1 -CTACTGCTTAGGGAGATAAGAT-TGCAAATTTAACCTGTTACC
* * * * *
81477735 CTACTGCTTAGGG-GATTAAG-GTG--AGTCTTCGATCTGCT-CC
1 CTACTGCTTAGGGAGA-TAAGATTGCAAAT-TT-AACCTGTTACC
81477775 ACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTA-C
1 -CTACTGCTTAGGGAGATAAGAT-TGCAAATTTAACCTGTTACC
81477818 CTACTGCTTAGGG
1 CTACTGCTTAGGG
81477831 GATTAAGGCG
Statistics
Matches: 318, Mismatches: 58, Indels: 109
0.66 0.12 0.22
Matches are distributed among these distances:
37 3 0.01
38 20 0.06
39 16 0.05
40 16 0.05
41 91 0.29
42 30 0.09
43 91 0.29
44 34 0.11
45 17 0.05
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.30
Consensus pattern (42 bp):
CTACTGCTTAGGGAGATAAGATTGCAAATTTAACCTGTTACC
Found at i:81477681 original size:250 final size:248
Alignment explanation
Indices: 81477212--81477840 Score: 1033
Period size: 250 Copynumber: 2.5 Consensus size: 248
81477202 AATCATCTTT
81477212 GATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGTGAGTCGTCATCGATCTGCT
1 GATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGTGAGTC-T--TCGATCTGCT
*
81477277 CCACTACTGCTTAGGGAGATAAGATCTGC-----GAACCTGTTACCCTACTGCTTA-GGGATTAA
63 CCACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAA
*
81477336 GGCGAGTCTTCGATCTGCTCCACTACTGCTTAAGGAGATAAGATCTGCAAATTTAACCTGTTACC
128 GGCGAGTCTTCGATCTGCTCCACTACTGCTTAAGGAGATAAGATCTG---A-TGAACCTGTTACC
81477401 CTACCGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAA
189 CTACCGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAA
* *
81477461 GATTTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCA
1 GATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGTGAGTCTTCGATCTGCTCCA
81477526 CTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGC
66 CTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGC
*
81477591 GAGTCGTCGTCGATCTGCTCCACTACTTCTT-AGAGAGATAAGATCTG-TGAACCTGTTACCCTA
131 GAGTC-T--TCGATCTGCTCCACTACTGCTTAAG-GAGATAAGATCTGATGAACCTGTTACCCTA
*
81477654 CTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAA
192 CCGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAA
*
81477711 GATCTGCAAATTTAACCTATTACCCTACTGCTTAGGGGATTAAGGTGAGTCTTCGATCTGCTCCA
1 GATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGTGAGTCTTCGATCTGCTCCA
81477776 CTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTA-CCTACTGCTTAGGGGATTAAGGC
66 CTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGC
81477840 G
131 G
81477841 CTGAATTTTG
Statistics
Matches: 361, Mismatches: 9, Indels: 20
0.93 0.02 0.05
Matches are distributed among these distances:
246 39 0.11
248 1 0.00
249 73 0.20
250 174 0.48
251 21 0.06
252 16 0.04
253 1 0.00
254 2 0.01
255 34 0.09
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (248 bp):
GATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGTGAGTCTTCGATCTGCTCCA
CTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGC
GAGTCTTCGATCTGCTCCACTACTGCTTAAGGAGATAAGATCTGATGAACCTGTTACCCTACCGC
TTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAA
Found at i:81478791 original size:7 final size:7
Alignment explanation
Indices: 81478779--81478839 Score: 63
Period size: 7 Copynumber: 8.7 Consensus size: 7
81478769 GGCCTCTCCA
81478779 TTTTTCT
1 TTTTTCT
81478786 TTTTTCT
1 TTTTTCT
81478793 TTTTAT-T
1 TTTT-TCT
81478800 TTTTTCT
1 TTTTTCT
* *
81478807 CTTTTAT
1 TTTTTCT
*
81478814 TTTCT-T
1 TTTTTCT
81478820 TTTTTCTT
1 TTTTTC-T
81478828 TTTTTCT
1 TTTTTCT
81478835 TTTTT
1 TTTTT
81478840 TTTGAAATAG
Statistics
Matches: 45, Mismatches: 5, Indels: 8
0.78 0.09 0.14
Matches are distributed among these distances:
6 6 0.13
7 31 0.69
8 8 0.18
ACGTcount: A:0.03, C:0.11, G:0.00, T:0.85
Consensus pattern (7 bp):
TTTTTCT
Found at i:81478796 original size:8 final size:8
Alignment explanation
Indices: 81478779--81478840 Score: 74
Period size: 8 Copynumber: 7.6 Consensus size: 8
81478769 GGCCTCTCCA
81478779 TTTTTC-T
1 TTTTTCTT
81478786 TTTTTCTT
1 TTTTTCTT
81478794 TTTATT-TT
1 TTT-TTCTT
*
81478802 TTTCTCTTT
1 TTTTTC-TT
81478811 TATTTTCTT
1 T-TTTTCTT
81478820 TTTTTCTT
1 TTTTTCTT
81478828 TTTTTCTT
1 TTTTTCTT
81478836 TTTTT
1 TTTTT
81478841 TTGAAATAGA
Statistics
Matches: 48, Mismatches: 2, Indels: 9
0.81 0.03 0.15
Matches are distributed among these distances:
7 7 0.15
8 29 0.60
9 8 0.17
10 4 0.08
ACGTcount: A:0.03, C:0.11, G:0.00, T:0.85
Consensus pattern (8 bp):
TTTTTCTT
Found at i:81478809 original size:16 final size:14
Alignment explanation
Indices: 81478785--81478842 Score: 59
Period size: 15 Copynumber: 4.2 Consensus size: 14
81478775 TCCATTTTTC
81478785 TTTTTTCTTTTTATT
1 TTTTTTC-TTTTATT
81478800 TTTTTCTCTTTTATT
1 TTTTT-TCTTTTATT
* *
81478815 TTCTTT-TTTT-CT
1 TTTTTTCTTTTATT
81478827 TTTTTTCTTTT-TT
1 TTTTTTCTTTTATT
81478840 TTT
1 TTT
81478843 GAAATAGAAG
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
12 6 0.16
13 12 0.32
14 1 0.03
15 16 0.43
16 2 0.05
ACGTcount: A:0.03, C:0.10, G:0.00, T:0.86
Consensus pattern (14 bp):
TTTTTTCTTTTATT
Found at i:81478820 original size:26 final size:26
Alignment explanation
Indices: 81478787--81478842 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
81478777 CATTTTTCTT
81478787 TTTTCTTTTTATT-TTTTTCTCTTTTA
1 TTTTCTTTTT-TTCTTTTTCTCTTTTA
* *
81478813 TTTTCTTTTTTTCTTTTTTTCTTTTT
1 TTTTCTTTTTTTCTTTTTCTCTTTTA
81478839 TTTT
1 TTTT
81478843 GAAATAGAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
25 2 0.07
26 25 0.93
ACGTcount: A:0.04, C:0.11, G:0.00, T:0.86
Consensus pattern (26 bp):
TTTTCTTTTTTTCTTTTTCTCTTTTA
Found at i:81484506 original size:19 final size:19
Alignment explanation
Indices: 81484472--81484549 Score: 106
Period size: 19 Copynumber: 4.1 Consensus size: 19
81484462 GATTACAAGT
81484472 TCATATCTTCAAGATTGCATA
1 TCATATC-T-AAGATTGCATA
*
81484493 TCGTATCTAAGATTG--TA
1 TCATATCTAAGATTGCATA
*
81484510 TCATATCTAATATTGCATA
1 TCATATCTAAGATTGCATA
81484529 TCATATCTAAGATTGCATA
1 TCATATCTAAGATTGCATA
81484548 TC
1 TC
81484550 CTTAAAGATT
Statistics
Matches: 51, Mismatches: 4, Indels: 6
0.84 0.07 0.10
Matches are distributed among these distances:
17 15 0.29
19 29 0.57
20 1 0.02
21 6 0.12
ACGTcount: A:0.33, C:0.17, G:0.10, T:0.40
Consensus pattern (19 bp):
TCATATCTAAGATTGCATA
Found at i:81494736 original size:14 final size:14
Alignment explanation
Indices: 81494717--81494745 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
81494707 ATGCTCTAGG
81494717 TACTAAATTGCATT
1 TACTAAATTGCATT
81494731 TACTAAATTGCATT
1 TACTAAATTGCATT
81494745 T
1 T
81494746 CAGCACTGCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.14, G:0.07, T:0.45
Consensus pattern (14 bp):
TACTAAATTGCATT
Found at i:81496876 original size:42 final size:43
Alignment explanation
Indices: 81496762--81496919 Score: 126
Period size: 42 Copynumber: 3.7 Consensus size: 43
81496752 GTATTGAACT
* *
81496762 GAATTATCGTATAAGACCGTGTCTGGGACACAGGCATCAATTTGA
1 GAATT-TCGTATAAGACCATGTCTGGGACACAGGCATCAATCT-A
* * * *
81496807 GAATTACGTGTAAGACTATGTCCGGGACATC-GGCATCATATCT-
1 GAATTTCGTATAAGACCATGTCTGGGACA-CAGGCATCA-ATCTA
* * *
81496850 G-ATTTCGTATAAGACCCTGTCTGGGACAAAGGCATCGATACTA
1 GAATTTCGTATAAGACCATGTCTGGGACACAGGCATCAAT-CTA
* * * *
81496893 -AATTACATGTAAGACCACGTCTGGGAC
1 GAATTTCGTATAAGACCATGTCTGGGAC
81496920 GTCGGCATTG
Statistics
Matches: 89, Mismatches: 18, Indels: 14
0.74 0.15 0.12
Matches are distributed among these distances:
41 2 0.02
42 30 0.34
43 22 0.25
44 26 0.29
45 9 0.10
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.26
Consensus pattern (43 bp):
GAATTTCGTATAAGACCATGTCTGGGACACAGGCATCAATCTA
Found at i:81503036 original size:34 final size:34
Alignment explanation
Indices: 81502997--81503065 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
81502987 AATGAAAAAA
*
81502997 TAACAAATTCACAAATAATGACTTTTTAAAACAG
1 TAACAAATTCAAAAATAATGACTTTTTAAAACAG
81503031 TAACAAATTCAAAAATAATGACTTTTTAAAACAG
1 TAACAAATTCAAAAATAATGACTTTTTAAAACAG
81503065 T
1 T
81503066 CCCCGGTAAC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.51, C:0.13, G:0.06, T:0.30
Consensus pattern (34 bp):
TAACAAATTCAAAAATAATGACTTTTTAAAACAG
Found at i:81505020 original size:16 final size:17
Alignment explanation
Indices: 81504989--81505021 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
81504979 TTCATAAGTA
81504989 TATATCAATCATTTCAT
1 TATATCAATCATTTCAT
81505006 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
81505022 GCACCATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:81505369 original size:46 final size:46
Alignment explanation
Indices: 81505317--81505435 Score: 184
Period size: 46 Copynumber: 2.6 Consensus size: 46
81505307 TGTCATAGTG
* * * * *
81505317 TCTTTCAACTATGGTCTTACTCATTTTCTATCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTATTCATTTCCCATCACGTTGCCATGGTA
*
81505363 TCTTTCAACCATGGTCTTATTCATTTCCCGTCACGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTATTCATTTCCCATCACGTTGCCATGGTA
81505409 TCTTTCAACCATGGTCTTATTCATTTC
1 TCTTTCAACCATGGTCTTATTCATTTC
81505436 ATATCAGTGG
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 67 1.00
ACGTcount: A:0.18, C:0.25, G:0.13, T:0.44
Consensus pattern (46 bp):
TCTTTCAACCATGGTCTTATTCATTTCCCATCACGTTGCCATGGTA
Found at i:81505447 original size:23 final size:23
Alignment explanation
Indices: 81505420--81505465 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
81505410 CTTTCAACCA
**
81505420 TGGTCTTATTCATTTCATATCAG
1 TGGTCTTACACATTTCATATCAG
81505443 TGGTCTTACACATTTCATATCAG
1 TGGTCTTACACATTTCATATCAG
81505466 GTTGCCATGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.24, C:0.20, G:0.13, T:0.43
Consensus pattern (23 bp):
TGGTCTTACACATTTCATATCAG
Found at i:81505475 original size:115 final size:115
Alignment explanation
Indices: 81505328--81505557 Score: 336
Period size: 115 Copynumber: 2.0 Consensus size: 115
81505318 CTTTCAACTA
* * ** * *
81505328 TGGTCTTACTCATTTTCTATCATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCG
1 TGGTCTTACACATTTTCTATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCACA
* **
81505393 TCACGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAG
66 ACACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
*
81505443 TGGTCTTACACA-TTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
1 TGGTCTTACACATTTTC-TATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAC
* *
81505507 AACAGGTTGCCATGGTATCTTTCAACCATGGTTTTACACATTTCATATCAG
65 AACACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
81505558 AGAGCACACT
Statistics
Matches: 102, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
114 4 0.04
115 98 0.96
ACGTcount: A:0.22, C:0.23, G:0.14, T:0.40
Consensus pattern (115 bp):
TGGTCTTACACATTTTCTATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCACA
ACACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
Found at i:81505493 original size:46 final size:46
Alignment explanation
Indices: 81505443--81505557 Score: 212
Period size: 46 Copynumber: 2.5 Consensus size: 46
81505433 TTCATATCAG
81505443 TGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCA
1 TGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCA
*
81505489 TGGTCTTACACATTTCATAACAGGTTGCCATGGTATCTTTCAACCA
1 TGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCA
*
81505535 TGGTTTTACACATTTCATATCAG
1 TGGTCTTACACATTTCATATCAG
81505558 AGAGCACACT
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 66 1.00
ACGTcount: A:0.25, C:0.23, G:0.15, T:0.37
Consensus pattern (46 bp):
TGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCA
Found at i:81508318 original size:14 final size:15
Alignment explanation
Indices: 81508299--81508327 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
81508289 TTCTTGGGCT
81508299 GTTCGGTTC-ACTTG
1 GTTCGGTTCAACTTG
81508313 GTTCGGTTCAACTTG
1 GTTCGGTTCAACTTG
81508328 ACCACTTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.10, C:0.21, G:0.28, T:0.41
Consensus pattern (15 bp):
GTTCGGTTCAACTTG
Found at i:81514183 original size:48 final size:46
Alignment explanation
Indices: 81513983--81514246 Score: 213
Period size: 48 Copynumber: 5.6 Consensus size: 46
81513973 TTATTTGTTT
81513983 GCTAGTGTAAGA-CATGTCTGGGACATGCATCAGCCACAT-TATGA-GA
1 GCTAGTGTAAGACCATGTCTGGGACATGCATC-G-CACATATA-GAGGA
* * *
81514029 GCCAGTGTAAGACCATGTCTAGGATATGGCATCG-ACAT-TGAGACGAGA
1 GCTAGTGTAAGACCATGTCTGGGACAT-GCATCGCACATAT-AGA-G-GA
* * * * *
81514077 GCTAGTGTAAGA-CATGTTTGGGACATGCATCG-GC-TACGAGATGT
1 GCTAGTGTAAGACCATGTCTGGGACATGCATCGCACATA-TAGAGGA
*
81514121 G-TCAGTGTAAGACCATGTCTGGGACATAGCATCAGCACATATAGAGGT
1 GCT-AGTGTAAGACCATGTCTGGGACAT-GCATC-GCACATATAGAGGA
* * *
81514169 GTTAGTGTAAGACCATGTCTGGGACATGGCATCGACACAAATATGTGAGA
1 GCTAGTGTAAGACCATGTCTGGGACAT-GCATCG-CACATATA-GAG-GA
*
81514219 GCTAGTGTAAGACCATGTCGGGGACATG
1 GCTAGTGTAAGACCATGTCTGGGACATG
81514247 GCGCCAGCCT
Statistics
Matches: 179, Mismatches: 21, Indels: 33
0.77 0.09 0.14
Matches are distributed among these distances:
43 1 0.01
44 11 0.06
45 21 0.12
46 27 0.15
47 26 0.15
48 61 0.34
49 6 0.03
50 26 0.15
ACGTcount: A:0.30, C:0.18, G:0.29, T:0.23
Consensus pattern (46 bp):
GCTAGTGTAAGACCATGTCTGGGACATGCATCGCACATATAGAGGA
Found at i:81520289 original size:50 final size:50
Alignment explanation
Indices: 81520179--81520363 Score: 216
Period size: 50 Copynumber: 3.7 Consensus size: 50
81520169 TCTCATATCG
* * **
81520179 ATGCCATGTCCCA-AACATGGTCTTACACGAAAT--CATATATCGATGCCA
1 ATGCCAAGTCCCAGAA-ATGGTCTTACATGGGATCACATATATCGATGCCA
*
81520227 ATGCCATA-TCCCAGATATGGTCTTACATGGGATCACATATATCGATGCCA
1 ATGCCA-AGTCCCAGAAATGGTCTTACATGGGATCACATATATCGATGCCA
* * * *
81520277 ATTCCAAGTCCCAAAAATAGTCTTACATGGGATCACATATATTGATGCCA
1 ATGCCAAGTCCCAGAAATGGTCTTACATGGGATCACATATATCGATGCCA
* * *
81520327 ATGCCATGTCCCTGACATGGTCTTACATGGGATCACA
1 ATGCCAAGTCCCAGAAATGGTCTTACATGGGATCACA
81520364 CATAACCCTA
Statistics
Matches: 116, Mismatches: 16, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
48 25 0.22
49 2 0.02
50 89 0.77
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (50 bp):
ATGCCAAGTCCCAGAAATGGTCTTACATGGGATCACATATATCGATGCCA
Found at i:81527848 original size:23 final size:23
Alignment explanation
Indices: 81527822--81527868 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
81527812 GAAAGCGGTG
81527822 ATGATTTCTTATTAGTGTCAACA
1 ATGATTTCTTATTAGTGTCAACA
81527845 ATGATTTCTTATTAGTGTCAACA
1 ATGATTTCTTATTAGTGTCAACA
81527868 A
1 A
81527869 GCGATAACTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.32, C:0.13, G:0.13, T:0.43
Consensus pattern (23 bp):
ATGATTTCTTATTAGTGTCAACA
Found at i:81528957 original size:2 final size:2
Alignment explanation
Indices: 81528950--81528981 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
81528940 ATCCCTAACA
81528950 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
81528982 GAAAAGTGAC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:81532965 original size:27 final size:28
Alignment explanation
Indices: 81532922--81532977 Score: 105
Period size: 27 Copynumber: 2.0 Consensus size: 28
81532912 TTTCAGCCTC
81532922 TACATTTTTTTGTATATTTAAAATTTAA
1 TACATTTTTTTGTATATTTAAAATTTAA
81532950 TACATTTTTTT-TATATTTAAAATTTAA
1 TACATTTTTTTGTATATTTAAAATTTAA
81532977 T
1 T
81532978 CTTTATACTT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 17 0.61
28 11 0.39
ACGTcount: A:0.36, C:0.04, G:0.02, T:0.59
Consensus pattern (28 bp):
TACATTTTTTTGTATATTTAAAATTTAA
Found at i:81536204 original size:40 final size:40
Alignment explanation
Indices: 81536138--81536288 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
81536128 AAATTGAATG
* * *
81536138 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
81536177 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
81536217 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
81536257 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
81536289 ACATGGTTAT
Statistics
Matches: 93, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
39 16 0.17
40 75 0.81
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:81536302 original size:40 final size:40
Alignment explanation
Indices: 81536175--81536304 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
81536165 ATGCTGGAAA
* * *
81536175 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * **
81536215 CTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* *
81536255 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
81536295 TTATATCCGG
1 TTATATCCGG
81536305 TTATATTCCG
Statistics
Matches: 75, Mismatches: 14, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
39 1 0.01
40 74 0.99
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:81540309 original size:26 final size:26
Alignment explanation
Indices: 81540280--81540387 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
81540270 TGGTACAAAT
81540280 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
81540306 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
81540332 TAATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
81540358 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81540384 TGAT
1 TGAT
81540388 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:81548362 original size:26 final size:26
Alignment explanation
Indices: 81548333--81548439 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
81548323 TGGTACAAAT
81548333 TGATAATGGGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
*
81548359 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
*
81548385 TGATAAT-GGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
* *
81548410 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
81548436 TGAT
1 TGAT
81548440 GGGCATTTCA
Statistics
Matches: 76, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
25 23 0.30
26 53 0.70
ACGTcount: A:0.34, C:0.07, G:0.22, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATATTCCA
Found at i:81548409 original size:51 final size:52
Alignment explanation
Indices: 81548333--81548439 Score: 180
Period size: 51 Copynumber: 2.1 Consensus size: 52
81548323 TGGTACAAAT
81548333 TGATAATGGGTTAGGTAAATATTCCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCATGATAATGGATTAGGTAAATATTCCA
* * *
81548385 TGATAAT-GGTTAGGTAAATGTTCCATGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATATTCCATGATAATGGATTAGGTAAATATTCCA
81548436 TGAT
1 TGAT
81548440 GGGCATTTCA
Statistics
Matches: 52, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
51 45 0.87
52 7 0.13
ACGTcount: A:0.34, C:0.07, G:0.22, T:0.36
Consensus pattern (52 bp):
TGATAATGGGTTAGGTAAATATTCCATGATAATGGATTAGGTAAATATTCCA
Found at i:81561156 original size:48 final size:48
Alignment explanation
Indices: 81561064--81561426 Score: 509
Period size: 48 Copynumber: 7.6 Consensus size: 48
81561054 AAATGTGGTT
81561064 GTGTAAGACCATGTCTGGGAC-TGGCATCGGTGATGATATATGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATATGTGCCA
* * * *
81561111 GTGCAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGTGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATATGTGCCA
*
81561159 GTGTAAGACCATGTCTGGGACAGGGCATCGGTGATGATATATGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATATGTGCCA
* * * * *
81561207 GTGTAAGACCATGTCTAGGACATGGCATCGGCGATGATATGTGCGCCT
1 GTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATATGTGCCA
*
81561255 GTGTAAGACCATGTTTGGGACATGGCATCGGTGATGATATATGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATATGTGCCA
*
81561303 GTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATGTGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATATGTGCCA
* * * * *
81561351 GTGTAAGACTATTTCTAGGACATGGCATCGGGGATGATATATG-GATTCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATATGTG--CCA
*
81561400 -TGTAAGAACATGTC-GAGGACATGGCAT
1 GTGTAAGACCATGTCTG-GGACATGGCAT
81561427 TGGTACTTTA
Statistics
Matches: 279, Mismatches: 33, Indels: 7
0.87 0.10 0.02
Matches are distributed among these distances:
47 21 0.08
48 256 0.92
49 2 0.01
ACGTcount: A:0.25, C:0.17, G:0.32, T:0.27
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATATGTGCCA
Found at i:81565316 original size:21 final size:21
Alignment explanation
Indices: 81565288--81565342 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
81565278 GATTTATACA
*
81565288 AATA-AATTTAACA-TCAATTT
1 AATACAATTT-ACATTCAATTC
81565308 AATACAATTTACATTCAATTC
1 AATACAATTTACATTCAATTC
* *
81565329 AATCCAATTCACAT
1 AATACAATTTACAT
81565343 ATTAGGCAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
20 7 0.23
21 23 0.77
ACGTcount: A:0.45, C:0.18, G:0.00, T:0.36
Consensus pattern (21 bp):
AATACAATTTACATTCAATTC
Found at i:81573785 original size:8 final size:8
Alignment explanation
Indices: 81573774--81573816 Score: 68
Period size: 8 Copynumber: 5.4 Consensus size: 8
81573764 TGTTTTATTG
81573774 TATTATAT
1 TATTATAT
81573782 TATTATAT
1 TATTATAT
81573790 TATTATAT
1 TATTATAT
* *
81573798 TAATAAAT
1 TATTATAT
81573806 TATTATAT
1 TATTATAT
81573814 TAT
1 TAT
81573817 ACTTAAGTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
8 31 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (8 bp):
TATTATAT
Found at i:81576750 original size:2 final size:2
Alignment explanation
Indices: 81576743--81576786 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
81576733 TAGGCACATT
81576743 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
81576785 TA
1 TA
81576787 CTTTGGTTTA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:81580006 original size:15 final size:15
Alignment explanation
Indices: 81579986--81580016 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
81579976 CATTACTTAG
81579986 ATGATATATTTCATA
1 ATGATATATTTCATA
81580001 ATGATATATTTCATA
1 ATGATATATTTCATA
81580016 A
1 A
81580017 CAAAAAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.42, C:0.06, G:0.06, T:0.45
Consensus pattern (15 bp):
ATGATATATTTCATA
Found at i:81596634 original size:39 final size:39
Alignment explanation
Indices: 81596580--81596657 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
81596570 ACATATCCTC
*
81596580 TAACAACATTTGTAGATAATATAATGTCTCATTTTATAA
1 TAACAACATTTGTAGATAATATAATGTCCCATTTTATAA
81596619 TAACAACATTTGTAGATAATATAATGTCCCATTTTATAA
1 TAACAACATTTGTAGATAATATAATGTCCCATTTTATAA
81596658 AACTGATTAT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.41, C:0.12, G:0.08, T:0.40
Consensus pattern (39 bp):
TAACAACATTTGTAGATAATATAATGTCCCATTTTATAA
Found at i:81597421 original size:17 final size:18
Alignment explanation
Indices: 81597399--81597438 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
81597389 ATACTGTCCT
* *
81597399 CCAAGCTAT-TTTTTCCA
1 CCAAGCGATATTTATCCA
81597416 CCAAGCGATATTTATCCA
1 CCAAGCGATATTTATCCA
81597434 CCAAG
1 CCAAG
81597439 GATTAAAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 8 0.40
18 12 0.60
ACGTcount: A:0.30, C:0.30, G:0.10, T:0.30
Consensus pattern (18 bp):
CCAAGCGATATTTATCCA
Found at i:81609301 original size:32 final size:33
Alignment explanation
Indices: 81609248--81609369 Score: 221
Period size: 32 Copynumber: 3.8 Consensus size: 33
81609238 CTCTGTTTCA
81609248 GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT
1 GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT
81609281 GGTTGCTGGAC-GGAGCTGGAATGTGAGTGTTT
1 GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT
81609313 GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT
1 GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT
*
81609346 -GTTGCTGGACAGTAGCTGGAATGT
1 GGTTGCTGGACAGGAGCTGGAATGT
81609370 CAAGAAGAAA
Statistics
Matches: 87, Mismatches: 1, Indels: 3
0.96 0.01 0.03
Matches are distributed among these distances:
32 55 0.63
33 32 0.37
ACGTcount: A:0.18, C:0.10, G:0.42, T:0.30
Consensus pattern (33 bp):
GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT
Found at i:81609363 original size:65 final size:65
Alignment explanation
Indices: 81609248--81609369 Score: 219
Period size: 65 Copynumber: 1.9 Consensus size: 65
81609238 CTCTGTTTCA
81609248 GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTTGGTTGCTGGACGGAGCTGGAATGTGAGTGTTT
1 GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTTGGTTGCTGGACGGAGCTGGAATGTGAGTGTTT
*
81609313 GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT-GTTGCTGGACAGTAGCTGGAATGT
1 GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTTGGTTGCTGGAC-GGAGCTGGAATGT
81609370 CAAGAAGAAA
Statistics
Matches: 55, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
64 10 0.18
65 45 0.82
ACGTcount: A:0.18, C:0.10, G:0.42, T:0.30
Consensus pattern (65 bp):
GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTTGGTTGCTGGACGGAGCTGGAATGTGAGTGTTT
Found at i:81613835 original size:6 final size:6
Alignment explanation
Indices: 81613824--81613849 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
81613814 AAGCCGATCC
81613824 AACTGA AACTGA AACTGA AACTGA AA
1 AACTGA AACTGA AACTGA AACTGA AA
81613850 TTGGATTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.54, C:0.15, G:0.15, T:0.15
Consensus pattern (6 bp):
AACTGA
Found at i:81618880 original size:28 final size:27
Alignment explanation
Indices: 81618849--81619119 Score: 178
Period size: 28 Copynumber: 9.9 Consensus size: 27
81618839 TGTTTTCATA
81618849 GCAATATATAAAAAGGAATGCCTTTGTG
1 GCAATATAT-AAAAGGAATGCCTTTGTG
* *
81618877 GCAAAATATTAAAATGAATGCCTTTGTG
1 GCAATATA-TAAAAGGAATGCCTTTGTG
* * **
81618905 GGAAAATATGAAAAGGAATGCCTTCATG
1 GCAATATAT-AAAAGGAATGCCTTTGTG
*
81618933 GAAATATATGAAAAGGAATGCCTTTGTG
1 GCAATATAT-AAAAGGAATGCCTTTGTG
* ** *
81618961 ACAATATATGACTAGAAATGCCTTTGTG
1 GCAATATAT-AAAAGGAATGCCTTTGTG
* * *
81618989 GCAA-ACTCTGAAAGGAATGTCTTTGTG
1 GCAATA-TATAAAAGGAATGCCTTTGTG
* *
81619016 GCAGACT-T-T-GATGGAAATGCCTTTGTG
1 GCA-A-TATATAAAAGG-AATGCCTTTGTG
*
81619043 GCAA-ACTCTAAAAGGAATGCCTTTGTG
1 GCAATA-TATAAAAGGAATGCCTTTGTG
* * * *
81619070 GCAGACAT-TAAAAGAAATGCCTTCGTA
1 GCA-ATATATAAAAGGAATGCCTTTGTG
* *
81619097 GCAA-ATTCTAAAAAGAATGCCTT
1 GCAATA-TATAAAAGGAATGCCTT
81619120 GATGGCATAC
Statistics
Matches: 196, Mismatches: 32, Indels: 31
0.76 0.12 0.12
Matches are distributed among these distances:
25 1 0.01
26 7 0.04
27 81 0.41
28 105 0.54
29 2 0.01
ACGTcount: A:0.37, C:0.14, G:0.22, T:0.28
Consensus pattern (27 bp):
GCAATATATAAAAGGAATGCCTTTGTG
Found at i:81618981 original size:84 final size:84
Alignment explanation
Indices: 81618831--81619007 Score: 214
Period size: 84 Copynumber: 2.1 Consensus size: 84
81618821 AACACGTCAA
** * * *
81618831 AAAAGGAATGTTTTCATAGCAATATATAAAAAGGAATGCCTTTGTGGCAAAATATTAAAATGAAT
1 AAAAGGAATGCCTTCATAGAAATATATAAAAAGGAATGCCTTTGTGACAAAATATGAAAATGAAT
*
81618896 GCCTTTGTGGGAAAATATG
66 GCCTTTGTGGCAAAATATG
* * * **
81618915 AAAAGGAATGCCTTCATGGAAATATATGAAAAGGAATGCCTTTGTGACAATATATGACTA-GAAA
1 AAAAGGAATGCCTTCATAGAAATATATAAAAAGGAATGCCTTTGTGACAAAATATGAAAATG-AA
* *
81618979 TGCCTTTGTGGCAAACTCTG
65 TGCCTTTGTGGCAAAATATG
81618999 -AAAGGAATG
1 AAAAGGAATG
81619008 TCTTTGTGGC
Statistics
Matches: 79, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
83 10 0.13
84 69 0.87
ACGTcount: A:0.40, C:0.11, G:0.21, T:0.28
Consensus pattern (84 bp):
AAAAGGAATGCCTTCATAGAAATATATAAAAAGGAATGCCTTTGTGACAAAATATGAAAATGAAT
GCCTTTGTGGCAAAATATG
Found at i:81619015 original size:27 final size:27
Alignment explanation
Indices: 81618860--81619132 Score: 169
Period size: 27 Copynumber: 10.0 Consensus size: 27
81618850 CAATATATAA
* * *
81618860 AAAGGAATGCCTTTGTGGCAAAATATTA
1 AAAGGAATGCCTTTGTGGCAAACT-CTG
* * * *
81618888 AAATGAATGCCTTTGTGGGAAAATATG
1 AAAGGAATGCCTTTGTGGCAAACTCTG
** * *
81618915 AAAAGGAATGCCTTCATGG-AAATATATG
1 -AAAGGAATGCCTTTGTGGCAAA-CTCTG
* *
81618943 AAAAGGAATGCCTTTGTGACAATA-TATG
1 -AAAGGAATGCCTTTGTGGCAA-ACTCTG
* *
81618971 ACTAGAAATGCCTTTGTGGCAAACTCTG
1 A-AAGGAATGCCTTTGTGGCAAACTCTG
* * *
81618999 AAAGGAATGTCTTTGTGGCAGACTTTG
1 AAAGGAATGCCTTTGTGGCAAACTCTG
* *
81619026 -ATGGAAATGCCTTTGTGGCAAACTCTA
1 AAAGG-AATGCCTTTGTGGCAAACTCTG
* *
81619053 AAAGGAATGCCTTTGTGGCAGACAT-TA
1 AAAGGAATGCCTTTGTGGCAAAC-TCTG
* * * * *
81619080 AAAGAAATGCCTTCGTAGCAAATTCTA
1 AAAGGAATGCCTTTGTGGCAAACTCTG
* *
81619107 AAAAGAATGCC-TTGATGGCATACTCT
1 AAAGGAATGCCTTTG-TGGCAAACTCT
81619133 ATATGATGGC
Statistics
Matches: 197, Mismatches: 37, Indels: 23
0.77 0.14 0.09
Matches are distributed among these distances:
26 6 0.03
27 101 0.51
28 87 0.44
29 2 0.01
30 1 0.01
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.28
Consensus pattern (27 bp):
AAAGGAATGCCTTTGTGGCAAACTCTG
Found at i:81619087 original size:54 final size:55
Alignment explanation
Indices: 81618849--81619119 Score: 228
Period size: 54 Copynumber: 4.9 Consensus size: 55
81618839 TGTTTTCATA
* * * * *
81618849 GCAATATATAAAAAGGAATGCCTTTGTGGCAAAATATTAAAATGAATGCCTTTGTG
1 GCAACATATGAAAAGAAATGCCTTTGTGGCAAAAT-CTAAAAGGAATGCCTTTGTG
* * * ** *
81618905 GGAAAATATGAAAAGGAATGCCTTCATGG-AAATATATGAAAAGGAATGCCTTTGTG
1 GCAACATATGAAAAGAAATGCCTTTGTGGCAAA-ATCT-AAAAGGAATGCCTTTGTG
* * ** * * *
81618961 ACAATATATGACTAGAAATGCCTTTGTGGCAAACTCTGAAAGGAATGTCTTTGTG
1 GCAACATATGAAAAGAAATGCCTTTGTGGCAAAATCTAAAAGGAATGCCTTTGTG
* ** *
81619016 GCAGAC-TTTG-ATGGAAATGCCTTTGTGGCAAACTCTAAAAGGAATGCCTTTGTG
1 GCA-ACATATGAAAAGAAATGCCTTTGTGGCAAAATCTAAAAGGAATGCCTTTGTG
* * * *
81619070 GCAGACAT-T-AAAAGAAATGCCTTCGTAGCAAATTCTAAAAAGAATGCCTT
1 GCA-ACATATGAAAAGAAATGCCTTTGTGGCAAAATCTAAAAGGAATGCCTT
81619120 GATGGCATAC
Statistics
Matches: 177, Mismatches: 32, Indels: 14
0.79 0.14 0.06
Matches are distributed among these distances:
54 81 0.46
55 26 0.15
56 67 0.38
57 3 0.02
ACGTcount: A:0.37, C:0.14, G:0.22, T:0.28
Consensus pattern (55 bp):
GCAACATATGAAAAGAAATGCCTTTGTGGCAAAATCTAAAAGGAATGCCTTTGTG
Found at i:81620610 original size:41 final size:41
Alignment explanation
Indices: 81620554--81620634 Score: 135
Period size: 41 Copynumber: 2.0 Consensus size: 41
81620544 TTGAGTCCCA
81620554 TTTTAAAGATATTTATGTTTTTGAACCCGTTTTAGCTTAAT
1 TTTTAAAGATATTTATGTTTTTGAACCCGTTTTAGCTTAAT
* * *
81620595 TTTTAATGATTTTTATGTTTTTGAACTCGTTTTAGCTTAA
1 TTTTAAAGATATTTATGTTTTTGAACCCGTTTTAGCTTAA
81620635 CTTACTTAGC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.25, C:0.09, G:0.12, T:0.54
Consensus pattern (41 bp):
TTTTAAAGATATTTATGTTTTTGAACCCGTTTTAGCTTAAT
Found at i:81621340 original size:31 final size:31
Alignment explanation
Indices: 81621302--81621556 Score: 228
Period size: 31 Copynumber: 8.2 Consensus size: 31
81621292 ACTGAATTCT
* * *
81621302 TGAAAAGGTTATATCCCAAACGTATATAAAA
1 TGAAAAGGTTATATCCGAAACGAATATCAAA
* * * *
81621333 TGAAAAGGTTATATCTGAAA-AATATATTAAT
1 TGAAAAGGTTATATCCGAAACGA-ATATCAAA
* ** *
81621364 TGAAAAGATTATATCTTAAACGGATATCAAA
1 TGAAAAGGTTATATCCGAAACGAATATCAAA
* * * *
81621395 TGAAAAGGTTATATTCGAAATGAATATTAAT
1 TGAAAAGGTTATATCCGAAACGAATATCAAA
* * *
81621426 TGAAAAGGTTATATCTGAAATGGATATCAAA
1 TGAAAAGGTTATATCCGAAACGAATATCAAA
* * * *
81621457 TGAAAATGTTATATTCGTAACGAATATTAAA
1 TGAAAAGGTTATATCCGAAACGAATATCAAA
* * *
81621488 TGAAAATGTAATATCC-AAAGCCG-GTATCAAA
1 TGAAAAGGTTATATCCGAAA--CGAATATCAAA
81621519 TGAAAAGGTTATATCCGAAACGAATATCAAA
1 TGAAAAGGTTATATCCGAAACGAATATCAAA
*
81621550 TAAAAAG
1 TGAAAAG
81621557 ATTCAAAAGG
Statistics
Matches: 177, Mismatches: 41, Indels: 12
0.77 0.18 0.05
Matches are distributed among these distances:
30 4 0.02
31 168 0.95
32 5 0.03
ACGTcount: A:0.47, C:0.09, G:0.15, T:0.29
Consensus pattern (31 bp):
TGAAAAGGTTATATCCGAAACGAATATCAAA
Found at i:81621398 original size:62 final size:61
Alignment explanation
Indices: 81621301--81621545 Score: 280
Period size: 62 Copynumber: 4.0 Consensus size: 61
81621291 TACTGAATTC
* * * *
81621301 TTGAAAAGGTTATATCCCAAACGTATATAAAATGAAAAGGTTATA-TCTGAAAAATATATTAA
1 TTGAAAAGGTTATATCTCAAACGGATATCAAATGAAAAGGTTATATTC-GAAAGA-ATATTAA
* *
81621363 TTGAAAAGATTATATCTTAAACGGATATCAAATGAAAAGGTTATATTCGAAATGAATATTAA
1 TTGAAAAGGTTATATCTCAAACGGATATCAAATGAAAAGGTTATATTCGAAA-GAATATTAA
* * * *
81621425 TTGAAAAGGTTATATCTGAAATGGATATCAAATGAAAATGTTATATTCGTAACGAATATTAA
1 TTGAAAAGGTTATATCTCAAACGGATATCAAATGAAAAGGTTATATTCG-AAAGAATATTAA
* * * *
81621487 ATGAAAATGTAATATC-CAAAGCCGG-TATCAAATGAAAAGGTTATATCCGAAACGAATAT
1 TTGAAAAGGTTATATCTCAAA--CGGATATCAAATGAAAAGGTTATATTCGAAA-GAATAT
81621546 CAAATAAAAA
Statistics
Matches: 158, Mismatches: 19, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
61 5 0.03
62 146 0.92
63 7 0.04
ACGTcount: A:0.46, C:0.09, G:0.15, T:0.30
Consensus pattern (61 bp):
TTGAAAAGGTTATATCTCAAACGGATATCAAATGAAAAGGTTATATTCGAAAGAATATTAA
Found at i:81623248 original size:20 final size:19
Alignment explanation
Indices: 81623212--81623262 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 19
81623202 AAGGGCTATT
*
81623212 TTGTAAA-GTTGTAAAATAA
1 TTGTAAATG-TGTGAAATAA
81623231 GTTGTAAATGTGTGAAATAA
1 -TTGTAAATGTGTGAAATAA
81623251 TTG-AAAT-TGTGA
1 TTGTAAATGTGTGA
81623263 GTTGTTATAG
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 5 0.17
18 4 0.14
19 3 0.10
20 16 0.55
21 1 0.03
ACGTcount: A:0.41, C:0.00, G:0.22, T:0.37
Consensus pattern (19 bp):
TTGTAAATGTGTGAAATAA
Found at i:81623965 original size:48 final size:48
Alignment explanation
Indices: 81623906--81624074 Score: 216
Period size: 48 Copynumber: 3.6 Consensus size: 48
81623896 GGTGATGTGT
* * *
81623906 GCTAGTGTAAGATATTTCTGGGACATGCATCGGCCTCGAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATATACAA
* ** ** *
81623954 GCCAGTGTAAGACATGTCTGGGACATGCATCGGTATTGAGA-CGA-GA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATATACAA
*
81624000 GCTAGTGTAAGACATGTATGGGACATGCATCGGCCTTGAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATATACAA
* *
81624048 ACTAGTGTAAGACCTGTCTGGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
81624075 GCGTCAGTTT
Statistics
Matches: 100, Mismatches: 19, Indels: 4
0.81 0.15 0.03
Matches are distributed among these distances:
46 38 0.38
47 2 0.02
48 60 0.60
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (48 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATATACAA
Found at i:81624154 original size:49 final size:48
Alignment explanation
Indices: 81624094--81624224 Score: 165
Period size: 49 Copynumber: 2.7 Consensus size: 48
81624084 TGTTGTGTGT
* *
81624094 CAGTGTAAGACCTGTCTAGGACATGGCATCGACAC-CGATAGATGAGAGC
1 CAGTGTAAGACCTGTCT-GGACATGGCATCGAC-CTCGATAGATAAAAGC
* * *
81624143 CAGTGTAAGACCTGTCTGGAACATGGCATCGGCCTCGATATATAAAAGT
1 CAGTGTAAGACCTGTCTGG-ACATGGCATCGACCTCGATAGATAAAAGC
*
81624192 CAGTGTAAGACCTGTCTGGGACATGGCGTCGAC
1 CAGTGTAAGACCTGTCT-GGACATGGCATCGAC
81624225 TTTGATGTGC
Statistics
Matches: 72, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
48 3 0.04
49 67 0.93
50 2 0.03
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.21
Consensus pattern (48 bp):
CAGTGTAAGACCTGTCTGGACATGGCATCGACCTCGATAGATAAAAGC
Found at i:81624172 original size:142 final size:145
Alignment explanation
Indices: 81623996--81624266 Score: 381
Period size: 142 Copynumber: 1.9 Consensus size: 145
81623986 GTATTGAGAC
* * *
81623996 GAGAGCTAGTGTAAGACATGTATGGGACATGCATCGGCCTTGAGATATACAAACT-AGTGTAAGA
1 GAGAGCCAGTGTAAGACATGTATGGAACATGCATCGGCCTCGAGATATA-AAACTCAGTGTAAGA
* * * *
81624060 CCTGTCTGGGACATGGCGTC-AGTTTGTTGTG-T-GTCAGTGTAAGACC-TGTCTAGGACATGGC
65 CCTGTCTGGGACATGGCGTCGACTTTGATGTGCTAGCCAGTATAAGACCATGTCTAGGACATGGC
81624121 ATCGACACCGATAGAT
130 ATCGACACCGATAGAT
* * * *
81624137 GAGAGCCAGTGTAAGACCTGTCTGGAACATGGCATCGGCCTCGATATATAAAAGTCAGTGTAAGA
1 GAGAGCCAGTGTAAGACATGTATGGAACAT-GCATCGGCCTCGAGATATAAAACTCAGTGTAAGA
*
81624202 CCTGTCTGGGACATGGCGTCGACTTTGATGTGCTAGCCAGTATAAGACCATGTCTGGGACATGGC
65 CCTGTCTGGGACATGGCGTCGACTTTGATGTGCTAGCCAGTATAAGACCATGTCTAGGACATGGC
81624267 GTCAGCATCT
Statistics
Matches: 112, Mismatches: 12, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
141 30 0.27
142 46 0.41
143 9 0.08
144 1 0.01
145 12 0.11
146 14 0.12
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (145 bp):
GAGAGCCAGTGTAAGACATGTATGGAACATGCATCGGCCTCGAGATATAAAACTCAGTGTAAGAC
CTGTCTGGGACATGGCGTCGACTTTGATGTGCTAGCCAGTATAAGACCATGTCTAGGACATGGCA
TCGACACCGATAGAT
Found at i:81632118 original size:38 final size:38
Alignment explanation
Indices: 81632076--81632182 Score: 169
Period size: 38 Copynumber: 2.8 Consensus size: 38
81632066 TATGTGACGC
81632076 AGGTTTAGCTCGGACGAGTAACCTGTATGTCATTATAA
1 AGGTTTAGCTCGGACGAGTAACCTGTATGTCATTATAA
* * *
81632114 AGGTTTAACTCGAACGAGTAACCTATATGTCATTATAA
1 AGGTTTAGCTCGGACGAGTAACCTGTATGTCATTATAA
*
81632152 AGGCTTAGCTCGGACGAGTAACCTGATATGT
1 AGGTTTAGCTCGGACGAGTAACCTG-TATGT
81632183 ATATATATTT
Statistics
Matches: 61, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
38 56 0.92
39 5 0.08
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30
Consensus pattern (38 bp):
AGGTTTAGCTCGGACGAGTAACCTGTATGTCATTATAA
Found at i:81639591 original size:12 final size:12
Alignment explanation
Indices: 81639576--81639606 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
81639566 TTATACCTTA
81639576 AATTATAATTAC
1 AATTATAATTAC
*
81639588 AATTACAATTAC
1 AATTATAATTAC
81639600 AATTATA
1 AATTATA
81639607 TACATATTGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.52, C:0.10, G:0.00, T:0.39
Consensus pattern (12 bp):
AATTATAATTAC
Found at i:81647514 original size:17 final size:16
Alignment explanation
Indices: 81647426--81647510 Score: 71
Period size: 17 Copynumber: 5.1 Consensus size: 16
81647416 GAGTGCACAT
*
81647426 GTGAGCTCTCAAGTTTG
1 GTGAGCTCGC-AGTTTG
*
81647443 GTGAGCTCGTAGTCTTG
1 GTGAGCTCGCAGT-TTG
* **
81647460 GCGAGCTCATATGTTTG
1 GTGAGCTCGCA-GTTTG
* *
81647477 GTGAGCTTGCAGGATTG
1 GTGAGCTCGCA-GTTTG
81647494 GTGAGCTCGCAGTTTG
1 GTGAGCTCGCAGTTTG
81647510 G
1 G
81647511 GTGACCTCAT
Statistics
Matches: 54, Mismatches: 12, Indels: 5
0.76 0.17 0.07
Matches are distributed among these distances:
16 8 0.15
17 44 0.81
18 2 0.04
ACGTcount: A:0.15, C:0.16, G:0.35, T:0.33
Consensus pattern (16 bp):
GTGAGCTCGCAGTTTG
Found at i:81650598 original size:40 final size:40
Alignment explanation
Indices: 81650540--81650630 Score: 114
Period size: 40 Copynumber: 2.3 Consensus size: 40
81650530 CTTAGTCTCA
*
81650540 CACACTAAGTGTCATATATAGCTGAAGCTATT-TCGAT-TCG
1 CACACTAAGTGTCATATATAGCCGAAGCT-TTCTCGATAT-G
** *
81650580 CACACTAAGTGTTTTATATGGCCGAAGCTTTCTCGATATG
1 CACACTAAGTGTCATATATAGCCGAAGCTTTCTCGATATG
81650620 CACACTAAGTG
1 CACACTAAGTG
81650631 CCAAACATAA
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
39 2 0.04
40 42 0.93
41 1 0.02
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.32
Consensus pattern (40 bp):
CACACTAAGTGTCATATATAGCCGAAGCTTTCTCGATATG
Found at i:81651096 original size:28 final size:29
Alignment explanation
Indices: 81651037--81651096 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 29
81651027 TTATCATTTA
* *
81651037 TTTCACAATTTAACCCCTTAATTTACACT
1 TTTCACAATTTAACCCCTTAATATACAAT
* * *
81651066 TTTCTCAATTTAA-TCCTTAATATGCAAT
1 TTTCACAATTTAACCCCTTAATATACAAT
81651094 TTT
1 TTT
81651097 TACTAAAAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
28 14 0.54
29 12 0.46
ACGTcount: A:0.30, C:0.22, G:0.02, T:0.47
Consensus pattern (29 bp):
TTTCACAATTTAACCCCTTAATATACAAT
Found at i:81654564 original size:18 final size:18
Alignment explanation
Indices: 81654543--81654609 Score: 71
Period size: 18 Copynumber: 3.7 Consensus size: 18
81654533 AATTGGTTAA
*
81654543 TCAGTAACAATCATTTAT
1 TCAGTAACAGTCATTTAT
* *
81654561 TCAGTATCAGTCGTTTAT
1 TCAGTAACAGTCATTTAT
* * *
81654579 TTAGTAATAGTCAATTAT
1 TCAGTAACAGTCATTTAT
*
81654597 TCAGTAGCAGTCA
1 TCAGTAACAGTCA
81654610 GTCTTTAATA
Statistics
Matches: 38, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
18 38 1.00
ACGTcount: A:0.33, C:0.15, G:0.13, T:0.39
Consensus pattern (18 bp):
TCAGTAACAGTCATTTAT
Found at i:81657276 original size:44 final size:43
Alignment explanation
Indices: 81657144--81657315 Score: 145
Period size: 43 Copynumber: 4.0 Consensus size: 43
81657134 AGCTAGTACA
* * * * *
81657144 ATGCCAATGTCCCAGACGTGGTCTTACATGTAATC-AAATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGAAATCTCAA-ATCG
* * * *
81657187 ATGCC-ACTGTCCCAAACAGGGTCTTACACGAGA--TCATATACG
1 ATGCCAAC-GTCCCAGACATGGTCTTACACGAAATCTCAAAT-CG
* * * * *
81657229 ATGCCAATGTCTCAGATATGGTTTTACACATAAATCTCAAATCG
1 ATGCCAACGTCCCAGACATGGTCTTACAC-GAAATCTCAAATCG
*
81657273 ATGCCAACGTCCCAGACATGGTCTTACACGAAATCTCATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGAAATCTCAAATCG
81657316 GAATCCTATG
Statistics
Matches: 98, Mismatches: 24, Indels: 14
0.72 0.18 0.10
Matches are distributed among these distances:
41 2 0.02
42 25 0.26
43 39 0.40
44 27 0.28
45 5 0.05
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGAAATCTCAAATCG
Found at i:81660613 original size:23 final size:23
Alignment explanation
Indices: 81660587--81660667 Score: 72
Period size: 23 Copynumber: 3.3 Consensus size: 23
81660577 TTTCACATAT
*
81660587 ATAAAATCACATAATGTAAACAC
1 ATAAAATCACATAATTTAAACAC
* * * *
81660610 ATAAAATAATATTAAAATATTCACACAT
1 ATAAAATCACA-T--AAT-TT-AAACAC
81660638 ATAAAATCACATAATTTAAACAC
1 ATAAAATCACATAATTTAAACAC
81660661 ATAAAAT
1 ATAAAAT
81660668 AATTTTAAAA
Statistics
Matches: 44, Mismatches: 9, Indels: 10
0.70 0.14 0.16
Matches are distributed among these distances:
23 20 0.45
24 3 0.07
25 3 0.07
26 3 0.07
27 2 0.05
28 13 0.30
ACGTcount: A:0.58, C:0.14, G:0.01, T:0.27
Consensus pattern (23 bp):
ATAAAATCACATAATTTAAACAC
Found at i:81660633 original size:51 final size:51
Alignment explanation
Indices: 81660578--81660679 Score: 177
Period size: 51 Copynumber: 2.0 Consensus size: 51
81660568 ACACAAAACT
*
81660578 TTCACATATATAAAATCACATAATGTAAACACATAAAATAATATTAAAATA
1 TTCACACATATAAAATCACATAATGTAAACACATAAAATAATATTAAAATA
* *
81660629 TTCACACATATAAAATCACATAATTTAAACACATAAAATAATTTTAAAATA
1 TTCACACATATAAAATCACATAATGTAAACACATAAAATAATATTAAAATA
81660680 ATTTTCTGAC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 48 1.00
ACGTcount: A:0.56, C:0.13, G:0.01, T:0.30
Consensus pattern (51 bp):
TTCACACATATAAAATCACATAATGTAAACACATAAAATAATATTAAAATA
Found at i:81678578 original size:28 final size:27
Alignment explanation
Indices: 81678515--81678584 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
81678505 ATAGTGAGTC
*
81678515 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
81678542 CGCACACTTAGTGCTACATGATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
81678570 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
81678585 GTACAAGTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:81681120 original size:17 final size:16
Alignment explanation
Indices: 81681096--81681142 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 16
81681086 GTATTTTAAG
81681096 GTGAGCTCACAGTTTT
1 GTGAGCTCACAGTTTT
*
81681112 GTAGAGCTCGCA-TATTT
1 GT-GAGCTCACAGT-TTT
81681129 GT-AGCTCACAGTTT
1 GTGAGCTCACAGTTT
81681143 GCATGGATGG
Statistics
Matches: 26, Mismatches: 2, Indels: 7
0.74 0.06 0.20
Matches are distributed among these distances:
15 9 0.35
16 4 0.15
17 13 0.50
ACGTcount: A:0.21, C:0.19, G:0.23, T:0.36
Consensus pattern (16 bp):
GTGAGCTCACAGTTTT
Found at i:81687938 original size:42 final size:42
Alignment explanation
Indices: 81687879--81687963 Score: 161
Period size: 42 Copynumber: 2.0 Consensus size: 42
81687869 ACATTAAAGT
81687879 AAGTTTAGAAACCTTCTAATAATGTAATAAAAGTTGAAAAAC
1 AAGTTTAGAAACCTTCTAATAATGTAATAAAAGTTGAAAAAC
*
81687921 AAGTTTAGAAACCTTCTAATAATGTAATACAAGTTGAAAAAC
1 AAGTTTAGAAACCTTCTAATAATGTAATAAAAGTTGAAAAAC
81687963 A
1 A
81687964 CTTTGAAACC
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.49, C:0.11, G:0.12, T:0.28
Consensus pattern (42 bp):
AAGTTTAGAAACCTTCTAATAATGTAATAAAAGTTGAAAAAC
Found at i:81693338 original size:62 final size:59
Alignment explanation
Indices: 81693249--81693382 Score: 198
Period size: 62 Copynumber: 2.2 Consensus size: 59
81693239 TTCAAAAATA
* * *
81693249 ATATTATTTTAAT-ATATTTAATATTAAATTTAATTTAATATTTATCTTATAGATAAATATT
1 ATATTAATTTAATAAGATTTAATATTAAATTTAATCTAATATTTATC-T-TA-ATAAATATT
*
81693310 CTATTAATTTAATAAGATTTAATATTAAATTTAATCTAATATTTATCTTAATAAATATT
1 ATATTAATTTAATAAGATTTAATATTAAATTTAATCTAATATTTATCTTAATAAATATT
81693369 ATATTAATTTAATA
1 ATATTAATTTAATA
81693383 TTAAAGTGAT
Statistics
Matches: 67, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
59 22 0.33
60 2 0.03
61 12 0.18
62 31 0.46
ACGTcount: A:0.44, C:0.03, G:0.01, T:0.51
Consensus pattern (59 bp):
ATATTAATTTAATAAGATTTAATATTAAATTTAATCTAATATTTATCTTAATAAATATT
Found at i:81693521 original size:25 final size:24
Alignment explanation
Indices: 81693491--81693538 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
81693481 TTGTAGAGAG
*
81693491 AAAATTCTCTGAAGAAATTATTTCA
1 AAAATTCTCTAAAGAAATT-TTTCA
* *
81693516 AAAATTTTCTAAAGATATTTTTC
1 AAAATTCTCTAAAGAAATTTTTC
81693539 TTATTTGCAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 4 0.20
25 16 0.80
ACGTcount: A:0.42, C:0.10, G:0.06, T:0.42
Consensus pattern (24 bp):
AAAATTCTCTAAAGAAATTTTTCA
Found at i:81696038 original size:22 final size:22
Alignment explanation
Indices: 81696007--81696048 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
81695997 CAAAATTTGG
*
81696007 AATAAATAATTAATAAAATAAT
1 AATAAATAATAAATAAAATAAT
* *
81696029 AATAACTAATAAATACAATA
1 AATAAATAATAAATAAAATA
81696049 TTGGGCTCAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.67, C:0.05, G:0.00, T:0.29
Consensus pattern (22 bp):
AATAAATAATAAATAAAATAAT
Found at i:81697086 original size:45 final size:43
Alignment explanation
Indices: 81697001--81697105 Score: 104
Period size: 45 Copynumber: 2.4 Consensus size: 43
81696991 GAATGAATAG
* *
81697001 AAATAGAGAAATGGAAAACATTTAGAAATGATTATGGTTTTCCACA
1 AAAT-GAGAAAT-GAAAACATTTAGAAATGAATATAGTTTT-CACA
** * * *
81697047 AAATGGAGAAATGAAATTATTTGGAAATGAATGTAGTTTTCTCA
1 AAAT-GAGAAATGAAAACATTTAGAAATGAATATAGTTTTCACA
81697091 AAATG-GAAATGAAAA
1 AAATGAGAAATGAAAA
81697106 TGAGAAATGA
Statistics
Matches: 50, Mismatches: 9, Indels: 4
0.79 0.14 0.06
Matches are distributed among these distances:
42 9 0.18
43 1 0.02
44 7 0.14
45 22 0.44
46 11 0.22
ACGTcount: A:0.47, C:0.06, G:0.19, T:0.29
Consensus pattern (43 bp):
AAATGAGAAATGAAAACATTTAGAAATGAATATAGTTTTCACA
Found at i:81699406 original size:18 final size:18
Alignment explanation
Indices: 81699372--81699413 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
81699362 CACACATACT
*
81699372 ATTTCATAACCTCATATC
1 ATTTCATAACCTAATATC
81699390 ATTTCATATA-CTAATATC
1 ATTTCATA-ACCTAATATC
*
81699408 AATTCA
1 ATTTCA
81699414 CAAGCTCTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 20 0.95
19 1 0.05
ACGTcount: A:0.38, C:0.21, G:0.00, T:0.40
Consensus pattern (18 bp):
ATTTCATAACCTAATATC
Found at i:81702795 original size:23 final size:23
Alignment explanation
Indices: 81702769--81702818 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
81702759 CTTTCCTTTC
81702769 TTAGCTTAGTTAGTTGATATTTG
1 TTAGCTTAGTTAGTTGATATTTG
* **
81702792 TTAGTTTCTTTAGTTGATATTTG
1 TTAGCTTAGTTAGTTGATATTTG
81702815 TTAG
1 TTAG
81702819 TTTCTTTAGT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.20, C:0.04, G:0.20, T:0.56
Consensus pattern (23 bp):
TTAGCTTAGTTAGTTGATATTTG
Found at i:81702819 original size:23 final size:23
Alignment explanation
Indices: 81702778--81702829 Score: 104
Period size: 23 Copynumber: 2.3 Consensus size: 23
81702768 CTTAGCTTAG
81702778 TTAGTTGATATTTGTTAGTTTCT
1 TTAGTTGATATTTGTTAGTTTCT
81702801 TTAGTTGATATTTGTTAGTTTCT
1 TTAGTTGATATTTGTTAGTTTCT
81702824 TTAGTT
1 TTAGTT
81702830 TTACTGTAGC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.17, C:0.04, G:0.17, T:0.62
Consensus pattern (23 bp):
TTAGTTGATATTTGTTAGTTTCT
Found at i:81714749 original size:32 final size:29
Alignment explanation
Indices: 81714708--81714782 Score: 82
Period size: 28 Copynumber: 2.6 Consensus size: 29
81714698 TGTTTAAAAA
*
81714708 ATAATTTTTATAAAATTCTAAAATATATAAAT
1 ATAAATTTT-TAAAATTC-AAAATA-ATAAAT
*
81714740 ATAAA-TTTTAAAATTCAAAATAATATAT
1 ATAAATTTTTAAAATTCAAAATAATAAAT
*
81714768 ATAAA-TTGTAAAATT
1 ATAAATTTTTAAAATT
81714783 TTATAATTTA
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
28 19 0.47
29 6 0.15
30 8 0.20
31 3 0.08
32 4 0.10
ACGTcount: A:0.55, C:0.03, G:0.01, T:0.41
Consensus pattern (29 bp):
ATAAATTTTTAAAATTCAAAATAATAAAT
Found at i:81714779 original size:28 final size:30
Alignment explanation
Indices: 81714718--81714782 Score: 98
Period size: 28 Copynumber: 2.2 Consensus size: 30
81714708 ATAATTTTTA
*
81714718 TAAAATTCTAAAATATATAAATATAAATTT
1 TAAAATTCTAAAATATATAAATATAAATTG
*
81714748 TAAAATTC-AAAATA-ATATATATAAATTG
1 TAAAATTCTAAAATATATAAATATAAATTG
81714776 TAAAATT
1 TAAAATT
81714783 TTATAATTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
28 19 0.58
29 6 0.18
30 8 0.24
ACGTcount: A:0.57, C:0.03, G:0.02, T:0.38
Consensus pattern (30 bp):
TAAAATTCTAAAATATATAAATATAAATTG
Found at i:81714811 original size:29 final size:29
Alignment explanation
Indices: 81714778--81714849 Score: 74
Period size: 29 Copynumber: 2.4 Consensus size: 29
81714768 ATAAATTGTA
* * *
81714778 AAATTTTATAATTTAAAAAAAAGG-TATTT
1 AAATTTAAAAATTT-AAAAAAAGGATACTT
*
81714807 AAATTTAAAAATTTGAAAAAAGGATACTT
1 AAATTTAAAAATTTAAAAAAAGGATACTT
81714836 AAATTGTCAAAAAT
1 AAATT-T-AAAAAT
81714850 ATATAATTTA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
28 8 0.22
29 21 0.58
30 1 0.03
31 6 0.17
ACGTcount: A:0.54, C:0.03, G:0.08, T:0.35
Consensus pattern (29 bp):
AAATTTAAAAATTTAAAAAAAGGATACTT
Found at i:81714909 original size:20 final size:20
Alignment explanation
Indices: 81714862--81714910 Score: 55
Period size: 21 Copynumber: 2.5 Consensus size: 20
81714852 ATAATTTAGA
81714862 AAAAAAAT-TAATTTTTTTG
1 AAAAAAATATAATTTTTTTG
** *
81714881 AATCTAAATATATTTTTTTTG
1 AA-AAAAATATAATTTTTTTG
81714902 AAAAAAATA
1 AAAAAAATA
81714911 AAATGTATGA
Statistics
Matches: 23, Mismatches: 5, Indels: 3
0.74 0.16 0.10
Matches are distributed among these distances:
19 2 0.09
20 9 0.39
21 12 0.52
ACGTcount: A:0.49, C:0.02, G:0.04, T:0.45
Consensus pattern (20 bp):
AAAAAAATATAATTTTTTTG
Found at i:81714945 original size:16 final size:16
Alignment explanation
Indices: 81714924--81715019 Score: 59
Period size: 16 Copynumber: 5.8 Consensus size: 16
81714914 TGTATGAATT
*
81714924 TTTTTTAAATTATATA
1 TTTTTTAATTTATATA
81714940 TTTTTTAATTTTTATATA
1 TTTTTTAA--TTTATATA
* *
81714958 TTATTTTGAATTTTTAAA
1 TT-TTTT-AATTTATATA
* * *
81714976 ATTTGT-ACTTATATA
1 TTTTTTAATTTATATA
* * *
81714991 ATTTTTAATTTTTAAA
1 TTTTTTAATTTATATA
*
81715007 TTTTTTAAATTAT
1 TTTTTTAATTTAT
81715020 TTATAAATTA
Statistics
Matches: 60, Mismatches: 15, Indels: 10
0.71 0.18 0.12
Matches are distributed among these distances:
15 11 0.18
16 24 0.40
17 3 0.05
18 16 0.27
19 4 0.07
20 2 0.03
ACGTcount: A:0.33, C:0.01, G:0.02, T:0.64
Consensus pattern (16 bp):
TTTTTTAATTTATATA
Found at i:81714957 original size:20 final size:20
Alignment explanation
Indices: 81714933--81714973 Score: 68
Period size: 18 Copynumber: 2.1 Consensus size: 20
81714923 TTTTTTTAAA
81714933 TTATATATT-TTTT-AATTT
1 TTATATATTATTTTGAATTT
81714951 TTATATATTATTTTGAATTT
1 TTATATATTATTTTGAATTT
81714971 TTA
1 TTA
81714974 AAATTTGTAC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 9 0.43
19 4 0.19
20 8 0.38
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.68
Consensus pattern (20 bp):
TTATATATTATTTTGAATTT
Found at i:81714996 original size:51 final size:50
Alignment explanation
Indices: 81714933--81715028 Score: 133
Period size: 51 Copynumber: 1.9 Consensus size: 50
81714923 TTTTTTTAAA
* *
81714933 TTATATATTTTTTAATTTTTATATATTATTTTGAATT-TTTA-AAATTTGTAC
1 TTATATAATTTTTAATTTTTA-A-ATT-TTTTAAATTATTTATAAATTTGTAC
81714984 TTATATAATTTTTAATTTTTAAATTTTTTAAATTATTTATAAATT
1 TTATATAATTTTTAATTTTTAAATTTTTTAAATTATTTATAAATT
81715029 ATATATGATT
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
48 8 0.20
49 7 0.17
50 6 0.15
51 20 0.49
ACGTcount: A:0.34, C:0.01, G:0.02, T:0.62
Consensus pattern (50 bp):
TTATATAATTTTTAATTTTTAAATTTTTTAAATTATTTATAAATTTGTAC
Found at i:81715218 original size:17 final size:16
Alignment explanation
Indices: 81715171--81715221 Score: 59
Period size: 15 Copynumber: 3.2 Consensus size: 16
81715161 AGTCAAATAT
*
81715171 ATTTTTTAATATT-TA
1 ATTTTTTAAAATTATA
* *
81715186 AATATTTAAAATTATA
1 ATTTTTTAAAATTATA
81715202 ATTTTTTAAACATTATA
1 ATTTTTTAAA-ATTATA
81715219 ATT
1 ATT
81715222 ATAATTTAAT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
15 10 0.34
16 10 0.34
17 9 0.31
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (16 bp):
ATTTTTTAAAATTATA
Found at i:81716146 original size:23 final size:24
Alignment explanation
Indices: 81716104--81716151 Score: 80
Period size: 23 Copynumber: 2.0 Consensus size: 24
81716094 ATATAAATGC
*
81716104 ATAAATAATTTCAAAAAATATATA
1 ATAAAAAATTTCAAAAAATATATA
81716128 ATAAAAAATTT-AAAAAATATATA
1 ATAAAAAATTTCAAAAAATATATA
81716151 A
1 A
81716152 ACATAAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 13 0.57
24 10 0.43
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (24 bp):
ATAAAAAATTTCAAAAAATATATA
Found at i:81721465 original size:6 final size:6
Alignment explanation
Indices: 81721422--81721453 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
81721412 GTATTTTTAT
81721422 TATTAA T-TTAA TATTAA TATTAA TATTAA TAT
1 TATTAA TATTAA TATTAA TATTAA TATTAA TAT
81721454 AAAATTAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 5 0.20
6 20 0.80
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (6 bp):
TATTAA
Found at i:81721529 original size:26 final size:27
Alignment explanation
Indices: 81721474--81721529 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
81721464 TTTATTAGTA
* *
81721474 TATATATTTAAAATAATTATGTATTCT
1 TATATATTTAAAATAATTATATATTAT
* *
81721501 TATATATTTACAAT-TTTATATATTAT
1 TATATATTTAAAATAATTATATATTAT
81721527 TAT
1 TAT
81721530 TTTCAACAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
26 12 0.48
27 13 0.52
ACGTcount: A:0.39, C:0.04, G:0.02, T:0.55
Consensus pattern (27 bp):
TATATATTTAAAATAATTATATATTAT
Found at i:81721547 original size:25 final size:23
Alignment explanation
Indices: 81721510--81721575 Score: 66
Period size: 21 Copynumber: 2.9 Consensus size: 23
81721500 TTATATATTT
81721510 ACAATTTTATATATTATTATTTTCA
1 ACAATTTTATATA-TATT-TTTTCA
*
81721535 ACAATTTTTTATATATTTTTT-A
1 ACAATTTTATATATATTTTTTCA
*
81721557 A-ATTTATTAT-TATATTTTT
1 ACAATT-TTATATATATTTTT
81721576 ATATATAAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
21 12 0.32
22 5 0.14
23 4 0.11
24 4 0.11
25 12 0.32
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (23 bp):
ACAATTTTATATATATTTTTTCA
Found at i:81721587 original size:27 final size:27
Alignment explanation
Indices: 81721556--81721608 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
81721546 TATATTTTTT
81721556 AAATTTATTAT-TATATTTT-TATATATA
1 AAATTT-TTATGT-TATTTTATATATATA
81721583 AAATTTTTATGTTATTTTATATATAT
1 AAATTTTTATGTTATTTTATATATAT
81721609 TTTTTAAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 10 0.42
27 14 0.58
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (27 bp):
AAATTTTTATGTTATTTTATATATATA
Found at i:81723965 original size:33 final size:33
Alignment explanation
Indices: 81723923--81723990 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
81723913 TTACCAAGAA
81723923 TAGGTTCTGTCAGTCAAGTACTTTTTATATTTT
1 TAGGTTCTGTCAGTCAAGTACTTTTTATATTTT
81723956 TAGGTTCTGTCAGTCAAGTACTTTTTATATTTT
1 TAGGTTCTGTCAGTCAAGTACTTTTTATATTTT
81723989 TA
1 TA
81723991 TCATTTTTAC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.22, C:0.12, G:0.15, T:0.51
Consensus pattern (33 bp):
TAGGTTCTGTCAGTCAAGTACTTTTTATATTTT
Found at i:81735816 original size:26 final size:26
Alignment explanation
Indices: 81735787--81735894 Score: 173
Period size: 26 Copynumber: 4.2 Consensus size: 26
81735777 TGGTACAAAT
81735787 TGATAAT-GAGTTAGGTAAATGTTCCA
1 TGATAATGGA-TTAGGTAAATGTTCCA
*
81735813 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
81735839 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
81735865 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
81735891 TGAT
1 TGAT
81735895 GGACATTTCA
Statistics
Matches: 77, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
26 75 0.97
27 2 0.03
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGATTAGGTAAATGTTCCA
Found at i:81737411 original size:26 final size:26
Alignment explanation
Indices: 81737382--81737434 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
81737372 TTTACAGTTT
81737382 TACCCCTAGTAGATAAATT-ACCGAAA
1 TACCCCTAG-AGATAAATTGACCGAAA
* *
81737408 TACCCCTAGAGTTAAATTGACCTAAA
1 TACCCCTAGAGATAAATTGACCGAAA
81737434 T
1 T
81737435 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.40, C:0.23, G:0.11, T:0.26
Consensus pattern (26 bp):
TACCCCTAGAGATAAATTGACCGAAA
Found at i:81739392 original size:8 final size:8
Alignment explanation
Indices: 81739379--81739412 Score: 50
Period size: 8 Copynumber: 4.2 Consensus size: 8
81739369 TTCTTTTATT
81739379 TAATATAA
1 TAATATAA
81739387 TAATATAA
1 TAATATAA
* *
81739395 TAATGTTA
1 TAATATAA
81739403 TAATATAA
1 TAATATAA
81739411 TA
1 TA
81739413 TTATTTTCTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (8 bp):
TAATATAA
Found at i:81742101 original size:32 final size:35
Alignment explanation
Indices: 81742064--81742146 Score: 86
Period size: 32 Copynumber: 2.5 Consensus size: 35
81742054 TATTATAGTA
81742064 ATTTTTAATATATATAATATA-TATT-AAATATT-
1 ATTTTTAATATATATAATATACTATTAAAATATTC
* **
81742096 ATTTTTATTA-ATATTTTATACTATTAAAATATTC
1 ATTTTTAATATATATAATATACTATTAAAATATTC
*
81742130 ATATTTTTATAT-TATAA
1 AT-TTTTAATATATATAA
81742147 AAATTAATTA
Statistics
Matches: 39, Mismatches: 7, Indels: 7
0.74 0.13 0.13
Matches are distributed among these distances:
31 8 0.21
32 13 0.33
33 7 0.18
34 2 0.05
35 9 0.23
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.55
Consensus pattern (35 bp):
ATTTTTAATATATATAATATACTATTAAAATATTC
Found at i:81742128 original size:24 final size:23
Alignment explanation
Indices: 81742101--81742154 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 23
81742091 ATATTATTTT
81742101 TATTAATATTTTATACTATTA-AAA
1 TATTAATATTTT-TA-TATTATAAA
*
81742125 TATTCATATTTTTATATTATAAA
1 TATTAATATTTTTATATTATAAA
*
81742148 AATTAAT
1 TATTAAT
81742155 TACTAAACAT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
22 5 0.19
23 10 0.38
24 11 0.42
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.52
Consensus pattern (23 bp):
TATTAATATTTTTATATTATAAA
Found at i:81742137 original size:25 final size:24
Alignment explanation
Indices: 81742101--81742150 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 24
81742091 ATATTATTTT
*
81742101 TATTAATATTTTATACTATTAAAA
1 TATTAATATTTTATACTATAAAAA
* *
81742125 TATTCATATTTTTATATTATAAAAA
1 TATTAATA-TTTTATACTATAAAAA
81742150 T
1 T
81742151 TAATTACTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
24 7 0.32
25 15 0.68
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.52
Consensus pattern (24 bp):
TATTAATATTTTATACTATAAAAA
Found at i:81742732 original size:19 final size:23
Alignment explanation
Indices: 81742687--81742737 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 23
81742677 TTTTTGTATT
81742687 TATTTATATTTAATAATAAATAA
1 TATTTATATTTAATAATAAATAA
81742710 TATTTAT-TTT-A-AATAAA-AA
1 TATTTATATTTAATAATAAATAA
81742729 TATTTATAT
1 TATTTATAT
81742738 CATTTTTAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
19 9 0.33
20 7 0.26
21 1 0.04
22 3 0.11
23 7 0.26
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (23 bp):
TATTTATATTTAATAATAAATAA
Found at i:81745637 original size:96 final size:96
Alignment explanation
Indices: 81745473--81745663 Score: 265
Period size: 96 Copynumber: 2.0 Consensus size: 96
81745463 TCCGAGGAAA
* * * * * * * *
81745473 TCTGTTATCGATGGGAATGATCGAGCAGATACGGAGCCCAGGAAACTTGGTTCGAACAAGGGAAA
1 TCTGTCATCGAAGGGAACGATAGAACAGACAAGGAGCCCAAGAAACTTGGTTCGAACAAGGGAAA
81745538 AGCCGAAGCAAAGAGGGCAAAGAGGAGCAAG
66 AGCCGAAGCAAAGAGGGCAAAGAGGAGCAAG
* * *
81745569 TCTGTCATCGAAGGGAACGATAGAACAGACAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGGTAA
1 TCTGTCATCGAAGGGAACGATAGAACAGACAAGGAGCCCAAGAAACTTGGTTCGAACAAGGGAAA
* *
81745634 AGCCGAAGCCAAGAGGGCTAAGAGGAGCAA
66 AGCCGAAGCAAAGAGGGCAAAGAGGAGCAA
81745664 AAAAAAGCGA
Statistics
Matches: 82, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
96 82 1.00
ACGTcount: A:0.37, C:0.18, G:0.33, T:0.13
Consensus pattern (96 bp):
TCTGTCATCGAAGGGAACGATAGAACAGACAAGGAGCCCAAGAAACTTGGTTCGAACAAGGGAAA
AGCCGAAGCAAAGAGGGCAAAGAGGAGCAAG
Found at i:81747576 original size:26 final size:27
Alignment explanation
Indices: 81747522--81747577 Score: 87
Period size: 26 Copynumber: 2.1 Consensus size: 27
81747512 ACACTAAAAG
81747522 TGTTAACTTATAATATTTTTTTTAAAT
1 TGTTAACTTATAATATTTTTTTTAAAT
* *
81747549 TGTTAATTTATAAT-TTTTTTTTAGAT
1 TGTTAACTTATAATATTTTTTTTAAAT
81747575 TGT
1 TGT
81747578 ATAAAAATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
26 14 0.52
27 13 0.48
ACGTcount: A:0.29, C:0.02, G:0.07, T:0.62
Consensus pattern (27 bp):
TGTTAACTTATAATATTTTTTTTAAAT
Found at i:81747587 original size:26 final size:26
Alignment explanation
Indices: 81747531--81747590 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
81747521 GTGTTAACTT
**
81747531 ATAATATTTTTTTTAAATTGTTAATTT
1 ATAAT-TTTTTTTTAAATTGTTAATAA
*
81747558 ATAATTTTTTTTTAGATTGTATAA-AA
1 ATAATTTTTTTTTAAATTGT-TAATAA
81747584 ATAATTT
1 ATAATTT
81747591 ATAATTCAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
26 21 0.72
27 8 0.28
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (26 bp):
ATAATTTTTTTTTAAATTGTTAATAA
Found at i:81747686 original size:2 final size:2
Alignment explanation
Indices: 81747679--81747709 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
81747669 TTTTTAAAAT
81747679 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
81747710 GTATGAAAGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:81750750 original size:15 final size:16
Alignment explanation
Indices: 81750730--81750759 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
81750720 TTTTGCTTCT
81750730 TCTTCCTTCA-CATCA
1 TCTTCCTTCATCATCA
81750745 TCTTCCTTCATCATC
1 TCTTCCTTCATCATC
81750760 TTAACTTGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.17, C:0.40, G:0.00, T:0.43
Consensus pattern (16 bp):
TCTTCCTTCATCATCA
Found at i:81752698 original size:40 final size:40
Alignment explanation
Indices: 81752640--81752736 Score: 167
Period size: 40 Copynumber: 2.4 Consensus size: 40
81752630 TACCCGAATA
* *
81752640 AAGTATGTATTAATAGAAAACTGTATAATTTATCCGGATG
1 AAGTATGTATTAACAGAAAACTGTATAATTTAACCGGATG
*
81752680 AAGTATGTAATAACAGAAAACTGTATAATTTAACCGGATG
1 AAGTATGTATTAACAGAAAACTGTATAATTTAACCGGATG
81752720 AAGTATGTATTAACAGA
1 AAGTATGTATTAACAGA
81752737 TATACTTAAA
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 53 1.00
ACGTcount: A:0.43, C:0.08, G:0.18, T:0.31
Consensus pattern (40 bp):
AAGTATGTATTAACAGAAAACTGTATAATTTAACCGGATG
Found at i:81753313 original size:17 final size:17
Alignment explanation
Indices: 81753293--81753325 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
81753283 ATAATGAATG
*
81753293 TTATTAAATTATATTTT
1 TTATTAAAATATATTTT
81753310 TTATTAAAATATATTT
1 TTATTAAAATATATTT
81753326 AATAATAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (17 bp):
TTATTAAAATATATTTT
Found at i:81753592 original size:16 final size:16
Alignment explanation
Indices: 81753571--81753626 Score: 85
Period size: 16 Copynumber: 3.5 Consensus size: 16
81753561 TGAATTACTT
* *
81753571 ATTACAACTCTATTCC
1 ATTACAGCTCTATTCA
*
81753587 ATTACAGCTTTATTCA
1 ATTACAGCTCTATTCA
81753603 ATTACAGCTCTATTCA
1 ATTACAGCTCTATTCA
81753619 ATTACAGC
1 ATTACAGC
81753627 CAACCAAGCA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 36 1.00
ACGTcount: A:0.32, C:0.25, G:0.05, T:0.38
Consensus pattern (16 bp):
ATTACAGCTCTATTCA
Found at i:81756486 original size:23 final size:23
Alignment explanation
Indices: 81756456--81756505 Score: 100
Period size: 23 Copynumber: 2.2 Consensus size: 23
81756446 TATATGTTCC
81756456 AATATAAAATTTTTATTGGTGAT
1 AATATAAAATTTTTATTGGTGAT
81756479 AATATAAAATTTTTATTGGTGAT
1 AATATAAAATTTTTATTGGTGAT
81756502 AATA
1 AATA
81756506 CACTACAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.42, C:0.00, G:0.12, T:0.46
Consensus pattern (23 bp):
AATATAAAATTTTTATTGGTGAT
Found at i:81757672 original size:17 final size:19
Alignment explanation
Indices: 81757650--81757695 Score: 62
Period size: 17 Copynumber: 2.6 Consensus size: 19
81757640 GACGTATAGA
81757650 AAGAAATAAAAAG-AGA-G
1 AAGAAATAAAAAGAAGAGG
*
81757667 AAGAAATAAATAGAAGAGG
1 AAGAAATAAAAAGAAGAGG
81757686 AA-AAATAAAA
1 AAGAAATAAAA
81757696 GCCGAAGGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 12 0.48
18 10 0.40
19 3 0.12
ACGTcount: A:0.72, C:0.00, G:0.20, T:0.09
Consensus pattern (19 bp):
AAGAAATAAAAAGAAGAGG
Found at i:81757677 original size:21 final size:19
Alignment explanation
Indices: 81757647--81757694 Score: 53
Period size: 21 Copynumber: 2.5 Consensus size: 19
81757637 ACGGACGTAT
*
81757647 AGAAAGAAATAAAAAGAGAGA
1 AGAAATAAAT-AAAAGAG-GA
*
81757668 AGAAATAAATAGAAGAGGA
1 AGAAATAAATAAAAGAGGA
81757687 A-AAATAAA
1 AGAAATAAA
81757695 AGCCGAAGGG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 7 0.28
19 3 0.12
20 6 0.24
21 9 0.36
ACGTcount: A:0.71, C:0.00, G:0.21, T:0.08
Consensus pattern (19 bp):
AGAAATAAATAAAAGAGGA
Found at i:81758184 original size:3 final size:3
Alignment explanation
Indices: 81758178--81758266 Score: 162
Period size: 3 Copynumber: 30.0 Consensus size: 3
81758168 CCCTAACAAC
*
81758178 AGA AGA AGA AGA AGA AGA AAA AGA AGA AGA AGA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
81758226 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AG- AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
81758267 GACTGTAAAA
Statistics
Matches: 83, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
2 2 0.02
3 81 0.98
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:81759168 original size:17 final size:17
Alignment explanation
Indices: 81759148--81759182 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
81759138 TTTCTATTTT
81759148 TTTTTCTCTTCTTCTTC
1 TTTTTCTCTTCTTCTTC
*
81759165 TTTTTCTTTTCTTCTTC
1 TTTTTCTCTTCTTCTTC
81759182 T
1 T
81759183 ACTAAACCCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (17 bp):
TTTTTCTCTTCTTCTTC
Found at i:81759168 original size:20 final size:20
Alignment explanation
Indices: 81759144--81759182 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
81759134 CAACTTTCTA
*
81759144 TTTTTTTTTCTCTTCTTCTTC
1 TTTTTCTTT-TCTTCTTCTTC
81759165 TTTTTCTTTTCTTCTTCT
1 TTTTTCTTTTCTTCTTCT
81759183 ACTAAACCCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (20 bp):
TTTTTCTTTTCTTCTTCTTC
Found at i:81759731 original size:20 final size:20
Alignment explanation
Indices: 81759706--81759745 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
81759696 ATTATTTAAG
81759706 GATATTTTAGTCTTTTCATT
1 GATATTTTAGTCTTTTCATT
81759726 GATATTTTAGTCTTTTCATT
1 GATATTTTAGTCTTTTCATT
81759746 TCAACAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.20, C:0.10, G:0.10, T:0.60
Consensus pattern (20 bp):
GATATTTTAGTCTTTTCATT
Found at i:81759774 original size:2 final size:2
Alignment explanation
Indices: 81759767--81759802 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
81759757 AAATTAATAC
81759767 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
81759803 TAGGATTTGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:81778373 original size:40 final size:40
Alignment explanation
Indices: 81778328--81778494 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
81778318 CGGAATATAA
81778328 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
81778368 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
81778408 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
81778448 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
81778487 CCGGATAT
1 CCGGATAT
81778495 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:81781172 original size:49 final size:48
Alignment explanation
Indices: 81781023--81781295 Score: 191
Period size: 49 Copynumber: 5.7 Consensus size: 48
81781013 TATGTGCGCT
* * * * * *
81781023 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGAGATATGCAAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATAGATG-GAGCC
* * * * * *
81781071 AGTGTAAGACCTGTCTGGAACATGGCATCGGC-TTG--ACAT-GTGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATAGATGGAGCC
* *
81781115 AGTGTAAGACCTGTATGGGACATGGCGTCGACATCGATAGATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATAGATG-GAGCC
* * * * * * * *
81781164 AGTGTAAGACTTGCCTAGGATATGGCATCGGCCTCGATATATGGAAGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATAGATGG-AGCC
* * * *
81781213 AGTGTAAGACCTCTCTGGGACATGACATCGACTTAGAT-G-TGTGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATAGATG-GAGCC
* * *
81781260 AGTGTAAGACCATGTTTGGAACATGGCATCGGCATC
1 AGTGTAAGACC-TGTCTGGGACATGGCATCGACATC
81781296 ATACATATGT
Statistics
Matches: 173, Mismatches: 43, Indels: 18
0.74 0.18 0.08
Matches are distributed among these distances:
44 30 0.17
45 2 0.01
46 3 0.02
47 19 0.11
48 42 0.24
49 77 0.45
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATAGATGGAGCC
Found at i:81781189 original size:93 final size:92
Alignment explanation
Indices: 81781023--81781292 Score: 217
Period size: 93 Copynumber: 2.9 Consensus size: 92
81781013 TATGTGCGCT
* * * * *
81781023 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATGCAAGCCAGTGTAAGACCTGTCTG
1 AGTGTAAGACATGTATGGGACATGCATCGACATCGAGAGATGCAAGCCAGTGTAAGACCTGCCTG
81781088 GAACATGGCATCGGCTTGACATGTGTC
66 GAACATGGCATCGGCTTGACATGTGTC
* * * *
81781115 AGTGTAAGACCTGTATGGGACATGGCGTCGACATCGATAGATG-AGAGCCAGTGTAAGACTTGCC
1 AGTGTAAGACATGTATGGGACAT-GCATCGACATCGAGAGATGCA-AGCCAGTGTAAGACCTGCC
* * * *
81781179 TAGG-ATATGGCATCGGCCTCGATATATGGAAGTC
64 T-GGAACATGGCATCGG-CTTG--ACAT-G-TGTC
* * * * ** *
81781213 AGTGTAAGACCTCTCTGGGACATGACATCGAC-T-TAGATG-TGTGAGCCAGTGTAAGACCATGT
1 AGTGTAAGACATGTATGGGACATG-CATCGACATCGAGA-GATGCAAGCCAGTGTAAGACC-TGC
*
81781275 TTGGAACATGGCATCGGC
63 CTGGAACATGGCATCGGC
81781293 ATCATACATA
Statistics
Matches: 142, Mismatches: 23, Indels: 22
0.76 0.12 0.12
Matches are distributed among these distances:
92 22 0.15
93 43 0.30
94 5 0.04
96 24 0.17
97 18 0.13
98 30 0.21
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (92 bp):
AGTGTAAGACATGTATGGGACATGCATCGACATCGAGAGATGCAAGCCAGTGTAAGACCTGCCTG
GAACATGGCATCGGCTTGACATGTGTC
Found at i:81785051 original size:63 final size:64
Alignment explanation
Indices: 81784971--81785153 Score: 194
Period size: 66 Copynumber: 2.8 Consensus size: 64
81784961 AGACATTATG
*
81784971 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACG-GATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
81785034 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
81785099 AA
63 AA
* * * *
81785101 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
81785154 CGAACTATAT
Statistics
Matches: 98, Mismatches: 16, Indels: 12
0.78 0.13 0.10
Matches are distributed among these distances:
62 1 0.01
63 39 0.40
64 5 0.05
65 6 0.06
66 40 0.41
67 5 0.05
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:81790140 original size:42 final size:42
Alignment explanation
Indices: 81790094--81790180 Score: 174
Period size: 42 Copynumber: 2.1 Consensus size: 42
81790084 ATACAAAGAA
81790094 AAAGAAGTTTAATTTATCATGAGTGATATATTATAAAACTTG
1 AAAGAAGTTTAATTTATCATGAGTGATATATTATAAAACTTG
81790136 AAAGAAGTTTAATTTATCATGAGTGATATATTATAAAACTTG
1 AAAGAAGTTTAATTTATCATGAGTGATATATTATAAAACTTG
81790178 AAA
1 AAA
81790181 TGCCTAAATT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.45, C:0.05, G:0.14, T:0.37
Consensus pattern (42 bp):
AAAGAAGTTTAATTTATCATGAGTGATATATTATAAAACTTG
Found at i:81792826 original size:21 final size:21
Alignment explanation
Indices: 81792800--81792840 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
81792790 TCTTAATTTA
*
81792800 TATAATATAAAGAACTTTGGC
1 TATAATATAAACAACTTTGGC
81792821 TATAATATAAACAACTTTGG
1 TATAATATAAACAACTTTGG
81792841 AATGGCAGGC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.44, C:0.10, G:0.12, T:0.34
Consensus pattern (21 bp):
TATAATATAAACAACTTTGGC
Found at i:81796869 original size:5 final size:5
Alignment explanation
Indices: 81796861--81796944 Score: 60
Period size: 5 Copynumber: 15.6 Consensus size: 5
81796851 ATCATATTTT
* * * * *
81796861 TATCA TATCA TATTTCA TATCA TGTCA TAGTACA TTTAA TATCT TATCT
1 TATCA TATCA TA--TCA TATCA TATCA TA-T-CA TATCA TATCA TATCA
*
81796910 TATCA TAACTCA TATCG TATCA TATCA TATCA TAT
1 TATCA T-A-TCA TATCA TATCA TATCA TATCA TAT
81796945 ACTACCCCCA
Statistics
Matches: 63, Mismatches: 10, Indels: 12
0.74 0.12 0.14
Matches are distributed among these distances:
5 47 0.75
6 4 0.06
7 12 0.19
ACGTcount: A:0.35, C:0.18, G:0.04, T:0.44
Consensus pattern (5 bp):
TATCA
Found at i:81796870 original size:16 final size:17
Alignment explanation
Indices: 81796849--81796889 Score: 57
Period size: 16 Copynumber: 2.5 Consensus size: 17
81796839 AGCATATCTT
*
81796849 ATATCATATTT-TTATC
1 ATATCATATTTCATATC
81796865 ATATCATATTTCATATC
1 ATATCATATTTCATATC
*
81796882 ATGTCATA
1 ATATCATA
81796890 GTACATTTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 11 0.50
17 11 0.50
ACGTcount: A:0.34, C:0.15, G:0.02, T:0.49
Consensus pattern (17 bp):
ATATCATATTTCATATC
Found at i:81802712 original size:26 final size:27
Alignment explanation
Indices: 81802674--81802724 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 27
81802664 TTCACATTTG
*
81802674 GACAGTCCACCAATGG-CTGTCTGCTT
1 GACAGTCCACCAATGGACAGTCTGCTT
* *
81802700 GACAGTTCGCCAATGGACAGTCTGC
1 GACAGTCCACCAATGGACAGTCTGC
81802725 CAAATAGCTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 14 0.67
27 7 0.33
ACGTcount: A:0.22, C:0.29, G:0.25, T:0.24
Consensus pattern (27 bp):
GACAGTCCACCAATGGACAGTCTGCTT
Found at i:81812308 original size:17 final size:17
Alignment explanation
Indices: 81812286--81812318 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
81812276 GTGTGTCACT
81812286 CACGGCCTAGACACACA
1 CACGGCCTAGACACACA
81812303 CACGGCCTAGACACAC
1 CACGGCCTAGACACAC
81812319 GCCCATGTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.33, C:0.42, G:0.18, T:0.06
Consensus pattern (17 bp):
CACGGCCTAGACACACA
Found at i:81817115 original size:40 final size:39
Alignment explanation
Indices: 81817038--81817293 Score: 313
Period size: 40 Copynumber: 6.4 Consensus size: 39
81817028 AAACCAAGTA
* * *
81817038 CCTTCGGGATTTA-ACCGG-ATATAGCTACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGAAT-TAG-TACTCGCACAAATG
* *
81817077 CCTTTGGGACTTAGCCCGG-ATATAGTAGTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAAT-TAGTA-CTCGCACAAATG
*
81817117 CCTTCGAGACTTAGCCCGG-ATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAAT-TAGT-ACTCGCACAAATG
81817157 CCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAATTAGT-ACTCGCACAAATG
* *
81817197 CCTTCAGGACTTAGCCCGGAATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGAATTAGT-ACTCGCACAAATG
*
81817237 CCTTCGGGACTTAGCCCGGAATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGAATTAGT-ACTCGCACAAATG
*
81817277 CCTTCGGAACTTAGCCC
1 CCTTCGGGACTTAGCCC
81817294 CGTTATCATC
Statistics
Matches: 199, Mismatches: 14, Indels: 7
0.90 0.06 0.03
Matches are distributed among these distances:
39 13 0.07
40 183 0.92
41 3 0.02
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCCGGAATTAGTACTCGCACAAATG
Found at i:81820039 original size:43 final size:41
Alignment explanation
Indices: 81819976--81820139 Score: 188
Period size: 42 Copynumber: 3.9 Consensus size: 41
81819966 CACCGTACCA
* * *
81819976 ATGCCATATCTCAGATATGGTTTTACATGTAATCTCGTATCG
1 ATGCCATATC-CAGATATGGTCTTACATGAAATCTCATATCG
* * *
81820018 ATGCCAATAGTCCAGCTATGGTCTTATACGAAATCTCATATCG
1 ATGCC-ATA-TCCAGATATGGTCTTACATGAAATCTCATATCG
*
81820061 ATGCCATATCCTAGATA-GAGTCTTACATGAAATCTCATATAG
1 ATGCCATATCC-AGATATG-GTCTTACATGAAATCTCATATCG
81820103 ATGCCATATCCCAGATATGGTCTTACAT-ATAATCTCA
1 ATGCCATAT-CCAGATATGGTCTTACATGA-AATCTCA
81820140 GTAACCCTAA
Statistics
Matches: 105, Mismatches: 10, Indels: 14
0.81 0.08 0.11
Matches are distributed among these distances:
41 5 0.05
42 62 0.59
43 36 0.34
44 2 0.02
ACGTcount: A:0.31, C:0.21, G:0.15, T:0.33
Consensus pattern (41 bp):
ATGCCATATCCAGATATGGTCTTACATGAAATCTCATATCG
Found at i:81822302 original size:14 final size:14
Alignment explanation
Indices: 81822283--81822310 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
81822273 CCTAGAAATA
81822283 TAATCATTCAAGGG
1 TAATCATTCAAGGG
81822297 TAATCATTCAAGGG
1 TAATCATTCAAGGG
81822311 GGCATACTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.14, G:0.21, T:0.29
Consensus pattern (14 bp):
TAATCATTCAAGGG
Found at i:81827085 original size:3 final size:3
Alignment explanation
Indices: 81827077--81827126 Score: 59
Period size: 3 Copynumber: 16.7 Consensus size: 3
81827067 AATTTAGATT
*
81827077 TTA TTA TTA TTA TTA TTA TTG TTA TTA TTCA TT- TTA TTA GTTA TT-
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA -TTA TTA
81827122 TTA TT
1 TTA TT
81827127 TTTTCTTTGA
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
2 4 0.10
3 31 0.76
4 6 0.15
ACGTcount: A:0.26, C:0.02, G:0.04, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:81827094 original size:12 final size:11
Alignment explanation
Indices: 81827074--81827126 Score: 65
Period size: 12 Copynumber: 4.7 Consensus size: 11
81827064 CAAAATTTAG
81827074 ATTTTATTATT
1 ATTTTATTATT
81827085 A--TTATTATT
1 ATTTTATTATT
81827094 ATTGTTATTATT
1 ATT-TTATTATT
81827106 CATTTTATTAGTT
1 -ATTTTATTA-TT
81827119 ATTTTATT
1 ATTTTATT
81827127 TTTTCTTTGA
Statistics
Matches: 37, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
9 9 0.24
11 1 0.03
12 22 0.59
13 5 0.14
ACGTcount: A:0.26, C:0.02, G:0.04, T:0.68
Consensus pattern (11 bp):
ATTTTATTATT
Done.