Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 259 of 318
Found at i:81833936 original size:44 final size:43
Alignment explanation
Indices: 81833793--81834931 Score: 333
Period size: 45 Copynumber: 24.5 Consensus size: 43
81833783 ATGGTGAATC
* * *
81833793 TTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGTCACAAAAC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTAAC-AAAT
* * * * * *
81833837 TTATCTCCCTAAAGTTGTAGTGAAGCAGGTTAAAAATAACAAAT
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATT-GAAGTAACAAAT
* *
81833881 CTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGTTACAAAT
1 -TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTAACAAAT
* * *
81833925 TTCATAC-CCCTGAAGTTGCATTGG-GACAGATTGAAGTCATCGTGGCGAAT
1 TT-AT-CTCCCTGAAGTTGCAGTGGAG-CAGATTGAAGT-A-----ACAAAT
* ** * * *
81833975 CTTATCTCCTTGAAGTTATAGTGGAGTAGATTAAAGTCACAAAT
1 -TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTAACAAAT
* * * **
81834019 CTTATCTCCCTGAAGTTGCAGTAGAGAAAATT--AGCTATA-AAGC
1 -TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-TA-ACAAAT
* * * * * *
81834062 TTATCTCCTTGAAGTTGAAGTGAAGCAGGTTGAAGTTACAAGT
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTAACAAAT
* * ***
81834105 CTTATCTCCCTGAAGTTGTAGTGGAGCAAATTGAAGATAGTGAAT
1 -TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-TAACAAAT
* * * *
81834150 CTTATTTCCCTAAAGTTGCAGTGGAGCAGACTGAAGATAGCAAAT
1 -TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-TAACAAAT
* * * ** * *
81834195 CTTAT-TTCCTTAGAGTTGTAGTGGAATAGATTAAAGATACAAATTAAAAAT
1 -TTATCTCCCTGA-AGTTGCAGTGGAGCAGATTGAAG-T----A--ACAAAT
* * ** * * * *
81834246 CTTATCTCCCTGAAGTTACAGTGAAATAGATTAAATTTACAGATT
1 -TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTAACA-AAT
* * * ** **
81834291 TTATCTCCCTAAAGTTACAGTGGAGTAGATCAAAGTTGCAAAT
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTAACAAAT
* *
81834334 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCGAAT
1 -TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-TAACAAAT
* * * ** * *
81834379 CTTATTTCTCTGAAGTTACAGTGGAATATATTAAAGCTACAAGTTACAAAT
1 -TTATCTCCCTGAAGTTGCAGTGGAGCAGATT---G----AAGTAACAAAT
* * * * *
81834430 CTAATCTCCTTGAGGTTGCAGTAGAGCAGATTGAAGATAGCAAAT
1 -TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-TAACAAAT
* ** *
81834475 CTTATTTCCCTGAAGTTGCAGTGGAATAGATTAAAGATACAAGTCACAAGT
1 -TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-T--AA--CA-AA-T
* * * *
81834526 CTTATAC-CTCTGAAGTTGCAGTAGG-TCGGATT-AAATCAACCATAGTGAAT
1 -TTAT-CTCCCTGAAGTTGCAGT-GGAGCAGATTGAAGT-AA-C--A---AAT
*
81834576 CTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGATAGA-AAAT
1 -TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-TA-ACAAAT
* * * *
81834621 CTTATTTTCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAGTTACAAAT
1 -TTATCTCCCTGAAGTTGCAGTGGAGCAGATT---G----AAGTAACAAAT
* * * * *
81834672 CTTATCTCCCTAAAGTTACAGTGGAGCAGATTGAAAATAGCGAAT
1 -TTATCTCCCTGAAGTTGCAGTGGAGCAGATTG-AAGTAACAAAT
* *
81834717 CTTAT-TCCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAGTTACAAAT
1 -TTATCT-CCCTGAAGTTGCAGTGGAGCAGATT---G----AAGTAACAAAT
* * * *
81834768 CTTATCTCCCT-AATGTTGCAGTGAAGTAGATTGAAGATAGCGAAT
1 -TTATCTCCCTGAA-GTTGCAGTGGAGCAGATTGAAG-TAACAAAT
* * * *
81834813 CTTATTTCCTTGAAGTTGCAGTGGAACAGATTAAAGCTACGAGTTACAAAT
1 -TTATCTCCCTGAAGTTGCAGTGGAGCAGATT---G--A--AGTAACAAAT
* * *
81834864 CTTATCTCCCTGAAGTTGCAGTGGAGTACATTGAAGTGACAAAT
1 -TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTAACAAAT
* *
81834908 CCTATAC-CTCTGAAGTTGCAGTGG
1 -TTAT-CTCCCTGAAGTTGCAGTGG
81834932 GTCGGATTAG
Statistics
Matches: 825, Mismatches: 186, Indels: 168
0.70 0.16 0.14
Matches are distributed among these distances:
42 27 0.03
43 12 0.01
44 236 0.29
45 263 0.32
46 3 0.00
47 2 0.00
48 12 0.01
49 9 0.01
50 61 0.07
51 182 0.22
52 18 0.02
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.30
Consensus pattern (43 bp):
TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTAACAAAT
Found at i:81834120 original size:86 final size:86
Alignment explanation
Indices: 81833975--81834136 Score: 227
Period size: 86 Copynumber: 1.9 Consensus size: 86
81833965 CGTGGCGAAT
* *
81833975 CTTATCTCCTTGAAGTTATAGTGGAGTAGATTAAAGTCACAAATCTTATCTCCCTGAAGTTGCAG
1 CTTATCTCCTTGAAGTTATAGTGAAGCAGATTAAAGTCACAAATCTTATCTCCCTGAAGTTGCAG
81834040 TAGAGAAAATTAGCTATAAAG
66 TAGAGAAAATTAGCTATAAAG
* * * * *
81834061 CTTATCTCCTTGAAGTTGA-AGTGAAGCAGGTTGAAGTTACAAGTCTTATCTCCCTGAAGTTGTA
1 CTTATCTCCTTGAAGTT-ATAGTGAAGCAGATTAAAGTCACAAATCTTATCTCCCTGAAGTTGCA
* *
81834125 GTGGAGCAAATT
65 GTAGAGAAAATT
81834137 GAAGATAGTG
Statistics
Matches: 66, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
86 65 0.98
87 1 0.02
ACGTcount: A:0.31, C:0.15, G:0.21, T:0.32
Consensus pattern (86 bp):
CTTATCTCCTTGAAGTTATAGTGAAGCAGATTAAAGTCACAAATCTTATCTCCCTGAAGTTGCAG
TAGAGAAAATTAGCTATAAAG
Found at i:81834459 original size:96 final size:96
Alignment explanation
Indices: 81834147--81834549 Score: 380
Period size: 96 Copynumber: 4.3 Consensus size: 96
81834137 GAAGATAGTG
* * * * * *
81834147 AATCTTATTTCCCTAAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATTT-CCTTAGAGT
1 AATCTTATCTCCTTGAAGTTGCAGTAGAGCAGATTGAAGATAGCAAATCTTATTTCCCTGA-AGT
** * *
81834211 TGTAGTGGAATAGATTAAAGATACAAATTAAA
65 TACAGTGGAATAGATTAAAGATACAAGTTACA
* * ** * ** * * * *
81834243 AATCTTATCTCCCTGAAGTTACAGT-GAAATAGATTAAATTTA-CAGATTTTATCTCCCTAAAGT
1 AATCTTATCTCCTTGAAGTTGCAGTAG-AGCAGATTGAAGATAGCAAATCTTATTTCCCTGAAGT
*
81834306 TACAGTGG---AG--T--AGAT-CAAAGTTGCA
65 TACAGTGGAATAGATTAAAGATAC-AAGTTACA
* * * *
81834331 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCGAATCTTATTTCTCTGAAGTT
1 AATCTTATCTCCTTGAAGTTGCAGTAGAGCAGATTGAAGATAGCAAATCTTATTTCCCTGAAGTT
* *
81834396 ACAGTGGAATATATTAAAGCTACAAGTTACA
66 ACAGTGGAATAGATTAAAGATACAAGTTACA
* *
81834427 AATCTAATCTCCTTGAGGTTGCAGTAGAGCAGATTGAAGATAGCAAATCTTATTTCCCTGAAGTT
1 AATCTTATCTCCTTGAAGTTGCAGTAGAGCAGATTGAAGATAGCAAATCTTATTTCCCTGAAGTT
* *
81834492 GCAGTGGAATAGATTAAAGATACAAGTCACA
66 ACAGTGGAATAGATTAAAGATACAAGTTACA
* *
81834523 AGTCTTAT-ACCTCTGAAGTTGCAGTAG
1 AATCTTATCTCCT-TGAAGTTGCAGTAG
81834550 GTCGGATTAA
Statistics
Matches: 246, Mismatches: 47, Indels: 28
0.77 0.15 0.09
Matches are distributed among these distances:
87 1 0.00
88 43 0.17
89 24 0.10
90 1 0.00
92 3 0.01
94 1 0.00
95 22 0.09
96 150 0.61
97 1 0.00
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (96 bp):
AATCTTATCTCCTTGAAGTTGCAGTAGAGCAGATTGAAGATAGCAAATCTTATTTCCCTGAAGTT
ACAGTGGAATAGATTAAAGATACAAGTTACA
Found at i:81834703 original size:96 final size:96
Alignment explanation
Indices: 81834573--81834899 Score: 521
Period size: 96 Copynumber: 3.4 Consensus size: 96
81834563 AACCATAGTG
* **
81834573 AATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGATAGAAAATCTTATTTTCCTGAAGTT
1 AATCTTATCTCCCTAAAGTTGCAGTGGAGTAGATTGAAGATAGCGAATCTTATTTTCCTGAAGTT
81834638 GCAGTGGAACAGATTAAAGCTACAAGTTACA
66 GCAGTGGAACAGATTAAAGCTACAAGTTACA
* * * **
81834669 AATCTTATCTCCCTAAAGTTACAGTGGAGCAGATTGAAAATAGCGAATCTTATTCCCCTGAAGTT
1 AATCTTATCTCCCTAAAGTTGCAGTGGAGTAGATTGAAGATAGCGAATCTTATTTTCCTGAAGTT
81834734 GCAGTGGAACAGATTAAAGCTACAAGTTACA
66 GCAGTGGAACAGATTAAAGCTACAAGTTACA
* *
81834765 AATCTTATCTCCCTAATGTTGCAGTGAAGTAGATTGAAGATAGCGAATCTTA-TTTCCTTGAAGT
1 AATCTTATCTCCCTAAAGTTGCAGTGGAGTAGATTGAAGATAGCGAATCTTATTTTCC-TGAAGT
*
81834829 TGCAGTGGAACAGATTAAAGCTACGAGTTACA
65 TGCAGTGGAACAGATTAAAGCTACAAGTTACA
* *
81834861 AATCTTATCTCCCTGAAGTTGCAGTGGAGTACATTGAAG
1 AATCTTATCTCCCTAAAGTTGCAGTGGAGTAGATTGAAG
81834900 TGACAAATCC
Statistics
Matches: 210, Mismatches: 20, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
95 3 0.01
96 207 0.99
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (96 bp):
AATCTTATCTCCCTAAAGTTGCAGTGGAGTAGATTGAAGATAGCGAATCTTATTTTCCTGAAGTT
GCAGTGGAACAGATTAAAGCTACAAGTTACA
Found at i:81834760 original size:242 final size:242
Alignment explanation
Indices: 81834331--81834772 Score: 697
Period size: 242 Copynumber: 1.8 Consensus size: 242
81834321 CAAAGTTGCA
**
81834331 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCGAATCTTATTTCTCTGAAGTT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGAAAATCTTATTTCTCTGAAGTT
* * * * * *
81834396 ACAGTGGAATATATTAAAGCTACAAGTTACAAATCTAATCTCCTTGAGGTTGCAGTAGAGCAGAT
66 ACAGTGGAACAGATTAAAGCTACAAGTTACAAATCTAATCTCCCTAAAGTTACAGTAGAGCAGAT
* * * *
81834461 TGAAGATAGCAAATCTTATTTCCCTGAAGTTGCAGTGGAATAGATTAAAGATACAAGTCACAAGT
131 TGAAAATAGCAAATCTTATTCCCCTGAAGTTGCAGTGGAACAGATTAAAGATACAAGTCACAAAT
81834526 CTTATACCTCTGAAGTTGCAGTAGGTCGGATTAAATCAACCATAGTG
196 CTTATACCTCTGAAGTTGCAGTAGGTCGGATTAAATCAACCATAGTG
*
81834573 AATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGATAGAAAATCTTATTT-TCCTGAAGT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGAAAATCTTATTTCT-CTGAAGT
* * *
81834637 TGCAGTGGAACAGATTAAAGCTACAAGTTACAAATCTTATCTCCCTAAAGTTACAGTGGAGCAGA
65 TACAGTGGAACAGATTAAAGCTACAAGTTACAAATCTAATCTCCCTAAAGTTACAGTAGAGCAGA
* * *
81834702 TTGAAAATAGCGAATCTTATTCCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAGTTACAAA
130 TTGAAAATAGCAAATCTTATTCCCCTGAAGTTGCAGTGGAACAGATTAAAGATACAAGTCACAAA
81834767 TCTTAT
195 TCTTAT
81834773 CTCCCTAATG
Statistics
Matches: 180, Mismatches: 19, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
241 1 0.01
242 179 0.99
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.30
Consensus pattern (242 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGAAAATCTTATTTCTCTGAAGTT
ACAGTGGAACAGATTAAAGCTACAAGTTACAAATCTAATCTCCCTAAAGTTACAGTAGAGCAGAT
TGAAAATAGCAAATCTTATTCCCCTGAAGTTGCAGTGGAACAGATTAAAGATACAAGTCACAAAT
CTTATACCTCTGAAGTTGCAGTAGGTCGGATTAAATCAACCATAGTG
Found at i:81835066 original size:145 final size:145
Alignment explanation
Indices: 81834812--81835073 Score: 341
Period size: 145 Copynumber: 1.8 Consensus size: 145
81834802 AGATAGCGAA
* * * * * * *
81834812 TCTTATTTCCTTGAAGTTGCAGTGGAACAGATTAAAGCTACGAGTTACAAATCTTATCTCCCTGA
1 TCTTATCTCCCTGAAATTGCAGTGGAACAAACTAAAGCTACAAGCTACAAATCTTATCTCCCTGA
* * *
81834877 AGTTGCAGTGGAGTACATTGAAGTGACAAATCCTATACCTCTGAAGTTGCAGTGGGTCGGATTAG
66 AGTTGCAATGGAGTACATTGAAGTGACAAATCCCATACCCCTGAAGTTGCAGTGGGTCGGATTAG
81834942 ATCTACTATAGTAAG
131 ATCTACTATAGTAAG
*
81834957 TCTTATCTCCCTGAAATTGCAGTGGAATAAACTAAAGCTACAAGCTACAAA-CATTATCTCCCTG
1 TCTTATCTCCCTGAAATTGCAGTGGAACAAACTAAAGCTACAAGCTACAAATC-TTATCTCCCTG
* ** *
81835021 AAGTTGTAATGGAGTAGGTTGAAGAT-ACGAATCCCAT-CTCCCTGAAGTTGCAG
65 AAGTTGCAATGGAGTACATTGAAG-TGACAAATCCCATAC-CCCTGAAGTTGCAG
81835074 AGGAGTATAT
Statistics
Matches: 99, Mismatches: 15, Indels: 6
0.82 0.12 0.05
Matches are distributed among these distances:
144 2 0.02
145 96 0.97
146 1 0.01
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (145 bp):
TCTTATCTCCCTGAAATTGCAGTGGAACAAACTAAAGCTACAAGCTACAAATCTTATCTCCCTGA
AGTTGCAATGGAGTACATTGAAGTGACAAATCCCATACCCCTGAAGTTGCAGTGGGTCGGATTAG
ATCTACTATAGTAAG
Found at i:81836958 original size:46 final size:46
Alignment explanation
Indices: 81836805--81837025 Score: 164
Period size: 46 Copynumber: 4.8 Consensus size: 46
81836795 ACTGATGCCG
* * * * * *
81836805 ATGCATATCCCAGATATGGTCTTACACTGGCTTTCATAT-ATCTGTGCCG
1 ATGCATGTCCCAGACAT-GTCTTACACTGGCTTACATCTCA--AG-GCCA
* * * **
81836854 ATGCATGTCCCAGACATTTCTTACACTAGC--ACATCTCGTA-GCTG
1 ATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTC-AAGGCCA
* ** *
81836898 ATACATGTCCCAGACATGTCTTACACTGGCTTACATCTTGAGGTCA
1 ATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCAAGGCCA
* * * * *
81836944 ATTCATGTCTCAGACATGTCTTACACTAGCTCT-CTTCTCAATGCCA
1 ATGCATGTCCCAGACATGTCTTACACTGGCT-TACATCTCAAGGCCA
*
81836990 ATGCATGTCCCAGACATGTCTTACACTGGCTCACAT
1 ATGCATGTCCCAGACATGTCTTACACTGGCTTACAT
81837026 AACAGTAGTG
Statistics
Matches: 135, Mismatches: 30, Indels: 17
0.74 0.16 0.09
Matches are distributed among these distances:
44 30 0.22
45 1 0.01
46 77 0.57
47 1 0.01
48 11 0.08
49 15 0.11
ACGTcount: A:0.24, C:0.28, G:0.16, T:0.32
Consensus pattern (46 bp):
ATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCAAGGCCA
Found at i:81842507 original size:46 final size:46
Alignment explanation
Indices: 81842409--81842627 Score: 164
Period size: 46 Copynumber: 4.8 Consensus size: 46
81842399 ACTGATGCCA
* * *
81842409 ATGCATGTCCCAGACATGTCTTACACTAGC--ACGTCTCGTA-GCTG
1 ATGCATGTCCTAGACATGTCTTACACTAGCTTACATCTCG-AGGCCG
* * *
81842453 ATAG-ATGTCCTAGATATGTCTTGCACTGGCTTACATCTCGAGGCCG
1 AT-GCATGTCCTAGACATGTCTTACACTAGCTTACATCTCGAGGCCG
* * * * * *
81842499 ATGCATGTCCCAGGCATATCTTACACTAGCTCT-CGTCTCAATGCCG
1 ATGCATGTCCTAGACATGTCTTACACTAGCT-TACATCTCGAGGCCG
* * * * *
81842545 ATGCATGT-CTCAAACATGTCTTACACTAGCATTTCATAAT-GTGGCTG
1 ATGCATGTCCT-AGACATGTCTTACACTAGC-TTACAT-CTCGAGGCCG
* *
81842592 ATGCATGTCCTAGACATGTCTTACACTGGCTCACAT
1 ATGCATGTCCTAGACATGTCTTACACTAGCTTACAT
81842628 AACAGCAGTG
Statistics
Matches: 135, Mismatches: 29, Indels: 20
0.73 0.16 0.11
Matches are distributed among these distances:
44 24 0.18
45 4 0.03
46 72 0.53
47 32 0.24
48 3 0.02
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (46 bp):
ATGCATGTCCTAGACATGTCTTACACTAGCTTACATCTCGAGGCCG
Found at i:81847085 original size:23 final size:23
Alignment explanation
Indices: 81847055--81847100 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
81847045 CAGAAGTGTC
81847055 GAACACCGTTGTACTAAACTGAG
1 GAACACCGTTGTACTAAACTGAG
*
81847078 GAACACCGTTGTACTGAACTGAG
1 GAACACCGTTGTACTAAACTGAG
81847101 CTAAGTGAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.33, C:0.22, G:0.24, T:0.22
Consensus pattern (23 bp):
GAACACCGTTGTACTAAACTGAG
Found at i:81848921 original size:40 final size:41
Alignment explanation
Indices: 81848835--81848995 Score: 114
Period size: 40 Copynumber: 3.9 Consensus size: 41
81848825 CGACCATGTT
* *
81848835 TGGCACTTAGTGTGC-GATTCGAGTTAGCTTCGGCTATATA
1 TGGCACTTAGTGTGCAAATTCGAGATAGCTTCGGCTATATA
** * * *
81848875 AAGCACTTAGTGTGCAAATTGGA-ATAGCTTCGGCTTTATG
1 TGGCACTTAGTGTGCAAATTCGAGATAGCTTCGGCTATATA
* * ** *
81848915 TGGCACTAAGTGTGC-AATACCGAGATAGCTTCAGTTTAATGTGA
1 TGGCACTTAGTGTGCAAAT-TCGAGATAGCTTC-GGCT-ATAT-A
* **
81848959 TGGCACTAAGTGTGC-AATATCGTTATAGCTTCGGCTA
1 TGGCACTTAGTGTGCAAAT-TCGAGATAGCTTCGGCTA
81848996 GTCATTTATG
Statistics
Matches: 93, Mismatches: 22, Indels: 10
0.74 0.18 0.08
Matches are distributed among these distances:
39 3 0.03
40 41 0.44
41 13 0.14
42 3 0.03
43 4 0.04
44 29 0.31
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.32
Consensus pattern (41 bp):
TGGCACTTAGTGTGCAAATTCGAGATAGCTTCGGCTATATA
Found at i:81851233 original size:3 final size:3
Alignment explanation
Indices: 81851225--81851277 Score: 65
Period size: 3 Copynumber: 17.7 Consensus size: 3
81851215 AATTTAGATT
*
81851225 TTA TTA TTA TTA TTA TTA TTA TTG TTA TTA TTCA TT- TTA TTA GTTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA -TTA
81851271 TT- TTA TT
1 TTA TTA TT
81851278 TTTTTCTTTG
Statistics
Matches: 44, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
2 4 0.09
3 34 0.77
4 6 0.14
ACGTcount: A:0.26, C:0.02, G:0.04, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:81851242 original size:12 final size:11
Alignment explanation
Indices: 81851222--81851277 Score: 76
Period size: 12 Copynumber: 4.7 Consensus size: 11
81851212 TCAAATTTAG
81851222 ATTTTATTATT
1 ATTTTATTATT
81851233 ATTATTATTATT
1 ATT-TTATTATT
81851245 ATTGTTATTATT
1 ATT-TTATTATT
81851257 CATTTTATTAGTT
1 -ATTTTATTA-TT
81851270 ATTTTATT
1 ATTTTATT
81851278 TTTTTCTTTG
Statistics
Matches: 41, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
11 3 0.07
12 33 0.80
13 5 0.12
ACGTcount: A:0.27, C:0.02, G:0.04, T:0.68
Consensus pattern (11 bp):
ATTTTATTATT
Found at i:81856242 original size:22 final size:22
Alignment explanation
Indices: 81856210--81856263 Score: 81
Period size: 22 Copynumber: 2.5 Consensus size: 22
81856200 CCATAAGAAG
* *
81856210 TTGTCCACATCACTTGCAGACC
1 TTGTCCCCATCACTTACAGACC
*
81856232 TTGTCCCCATCATTTACAGACC
1 TTGTCCCCATCACTTACAGACC
81856254 TTGTCCCCAT
1 TTGTCCCCAT
81856264 AAACTCTTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.20, C:0.37, G:0.11, T:0.31
Consensus pattern (22 bp):
TTGTCCCCATCACTTACAGACC
Found at i:81857527 original size:30 final size:27
Alignment explanation
Indices: 81857493--81857548 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
81857483 TACAGCTGAA
81857493 TTTAAGATGTTTCTTAGCTTATTACTTGTG
1 TTTAAGATG--TCTTAG-TTATTACTTGTG
*
81857523 TTTAATATGTCTTAGTTATTACTTGT
1 TTTAAGATGTCTTAGTTATTACTTGT
81857549 TTTGATGTGT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
27 11 0.44
28 6 0.24
30 8 0.32
ACGTcount: A:0.21, C:0.09, G:0.14, T:0.55
Consensus pattern (27 bp):
TTTAAGATGTCTTAGTTATTACTTGTG
Found at i:81858115 original size:10 final size:10
Alignment explanation
Indices: 81858084--81858118 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
81858074 TTGCAGAAGC
81858084 TTTCTGGAAT
1 TTTCTGGAAT
*
81858094 TTTCTTGAAAT
1 TTTC-TGGAAT
81858105 TTTCTGGAAT
1 TTTCTGGAAT
81858115 TTTC
1 TTTC
81858119 AGCTCATTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
10 13 0.59
11 9 0.41
ACGTcount: A:0.20, C:0.11, G:0.14, T:0.54
Consensus pattern (10 bp):
TTTCTGGAAT
Found at i:81861542 original size:40 final size:40
Alignment explanation
Indices: 81861304--81861528 Score: 305
Period size: 40 Copynumber: 5.7 Consensus size: 40
81861294 TCGAATGATG
* * *
81861304 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
81861344 TCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
81861384 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
81861423 TTCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
81861463 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
81861504 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
81861529 AACGAGTAGC
Statistics
Matches: 166, Mismatches: 14, Indels: 10
0.87 0.07 0.05
Matches are distributed among these distances:
39 34 0.20
40 123 0.74
41 9 0.05
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:81861559 original size:119 final size:119
Alignment explanation
Indices: 81861315--81861561 Score: 272
Period size: 119 Copynumber: 2.1 Consensus size: 119
81861305 CCGGGCTAAG
*
81861315 TCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTAC
1 TCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTAC
* ** * * *
81861380 TAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATTCGGGTTAAG
66 TAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAATTCCGATTAAC
* * ** *
81861434 TCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTT
1 TCCCGAAGGC-TTTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTT
* *
81861497 ACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA-TCCGATTAAAC
64 ACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-CTAAATTCCGATT-AAC
81861554 T-CCGAAGG
1 TCCCGAAGG
81861562 TACGTGATTC
Statistics
Matches: 108, Mismatches: 14, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
118 3 0.03
119 73 0.68
120 32 0.30
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (119 bp):
TCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTAC
TAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAATTCCGATTAAC
Found at i:81865988 original size:27 final size:27
Alignment explanation
Indices: 81865934--81866000 Score: 91
Period size: 27 Copynumber: 2.4 Consensus size: 27
81865924 TACAACTGAA
81865934 TTTAATATGTGTCTTAGTTTATTACTTGT
1 TTTAATA--TGTCTTAGTTTATTACTTGT
81865963 GTTTAATATGTCTTAG-TTATTACTTGT
1 -TTTAATATGTCTTAGTTTATTACTTGT
*
81865990 TTTAATGTGTC
1 TTTAATATGTC
81866001 CTAGCTGAAT
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
26 10 0.28
27 11 0.31
28 8 0.22
30 7 0.19
ACGTcount: A:0.21, C:0.07, G:0.15, T:0.57
Consensus pattern (27 bp):
TTTAATATGTCTTAGTTTATTACTTGT
Found at i:81868133 original size:40 final size:40
Alignment explanation
Indices: 81868051--81868227 Score: 180
Period size: 40 Copynumber: 4.5 Consensus size: 40
81868041 CGGATGATAA
* * ** *
81868051 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGCTAGAT
* * * *
81868091 CCGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTAGAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTG-CTAGAT
* *
81868131 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGCTAGAT
* * * *
81868171 CTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGCTAGAT
81868211 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
81868228 ATACTTGGGT
Statistics
Matches: 116, Mismatches: 18, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
38 1 0.01
39 15 0.13
40 98 0.84
41 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGCTAGAT
Found at i:81868189 original size:80 final size:80
Alignment explanation
Indices: 81868051--81868227 Score: 234
Period size: 80 Copynumber: 2.2 Consensus size: 80
81868041 CGGATGATAA
* * * *
81868051 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTATGTCCCGAAGGCATTTA
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTA
*
81868116 TGCTAG-TGATTAGAT
66 TGCGAGTTG-TTAGAT
* * *
81868131 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCTGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTA
*
81868196 TGCGAGTTGTTATAT
66 TGCGAGTTGTTAGAT
81868211 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
81868228 ATACTTGGGT
Statistics
Matches: 86, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
78 1 0.01
79 13 0.15
80 70 0.81
81 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTA
TGCGAGTTGTTAGAT
Found at i:81868495 original size:22 final size:22
Alignment explanation
Indices: 81868455--81868496 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
81868445 GAATGTGCAT
*
81868455 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
81868477 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
81868497 TCAAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:81869787 original size:10 final size:11
Alignment explanation
Indices: 81869754--81869788 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
81869744 CTAGAGAAGC
81869754 TTCTTGGAATT
1 TTCTTGGAATT
*
81869765 TTCTTGAAATT
1 TTCTTGGAATT
81869776 TT-TTGGAATT
1 TTCTTGGAATT
81869786 TTC
1 TTC
81869789 AGCTCATTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 9 0.43
11 12 0.57
ACGTcount: A:0.20, C:0.09, G:0.14, T:0.57
Consensus pattern (11 bp):
TTCTTGGAATT
Found at i:81871950 original size:57 final size:58
Alignment explanation
Indices: 81871887--81872005 Score: 159
Period size: 57 Copynumber: 2.1 Consensus size: 58
81871877 TTTTTCAAGT
* * *
81871887 CATTTTCATTTTCATTTTAGAGAAAACCACATTCATTTCCAAATGATTCC-ATTTCTC
1 CATTTTCAATTTCATTTTAGAGAAAACCACAATCATTTCCAAAAGATTCCTATTTCTC
* * * * *
81871944 CATTTTCAATTTCGTTTTAGGGAAAACCATAATCATTTCCAAAAGTTTCCTATTTCTT
1 CATTTTCAATTTCATTTTAGAGAAAACCACAATCATTTCCAAAAGATTCCTATTTCTC
81872002 CATT
1 CATT
81872006 CACCATTTCT
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
57 43 0.81
58 10 0.19
ACGTcount: A:0.29, C:0.21, G:0.07, T:0.43
Consensus pattern (58 bp):
CATTTTCAATTTCATTTTAGAGAAAACCACAATCATTTCCAAAAGATTCCTATTTCTC
Found at i:81877998 original size:15 final size:15
Alignment explanation
Indices: 81877978--81878018 Score: 59
Period size: 13 Copynumber: 2.9 Consensus size: 15
81877968 AAAACAAATG
*
81877978 AAATAAGAATAACAA
1 AAATAAAAATAACAA
81877993 AAATAAAAATAAC--
1 AAATAAAAATAACAA
81878006 AAATAAAAATAAC
1 AAATAAAAATAAC
81878019 TATAATGAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
13 13 0.52
15 12 0.48
ACGTcount: A:0.76, C:0.07, G:0.02, T:0.15
Consensus pattern (15 bp):
AAATAAAAATAACAA
Found at i:81878073 original size:3 final size:3
Alignment explanation
Indices: 81878052--81878161 Score: 54
Period size: 3 Copynumber: 36.7 Consensus size: 3
81878042 TAACATAAAG
* * * *
81878052 AAT AAT AA- ACT AAT GAT AAT AA- AACT AAA AAT AA- AAG AA- AATT
1 AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT AA-T
* *
81878095 AAT AAT AAT AAT AAT GAG AAT AAT AAT AAAT AAAT AAAT AAT AACT AGA-
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT -AAT -AAT AAT AA-T A-AT
81878144 AA- AAT AA- AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AA
81878162 CAAATAACCA
Statistics
Matches: 86, Mismatches: 10, Indels: 22
0.73 0.08 0.19
Matches are distributed among these distances:
2 12 0.14
3 56 0.65
4 17 0.20
5 1 0.01
ACGTcount: A:0.68, C:0.03, G:0.05, T:0.25
Consensus pattern (3 bp):
AAT
Found at i:81878150 original size:30 final size:30
Alignment explanation
Indices: 81878101--81878188 Score: 76
Period size: 30 Copynumber: 2.9 Consensus size: 30
81878091 AATTAATAAT
*
81878101 AATAATAA-TGAGAATAATAATAAATAAATA
1 AATAATAACT-AGAAAAATAATAAATAAATA
*
81878131 AATAATAACTAGAAAAATAAAATAAT-AATA
1 AATAATAACTAGAAAAATAATA-AATAAATA
*
81878161 ACA-AATAACCA-AATAAATAATGAAATAA
1 A-ATAATAACTAGAA-AAATAAT-AAATAA
81878189 TGAAAAAAAC
Statistics
Matches: 48, Mismatches: 4, Indels: 11
0.76 0.06 0.17
Matches are distributed among these distances:
29 2 0.04
30 39 0.81
31 7 0.15
ACGTcount: A:0.68, C:0.05, G:0.05, T:0.23
Consensus pattern (30 bp):
AATAATAACTAGAAAAATAATAAATAAATA
Found at i:81878168 original size:18 final size:17
Alignment explanation
Indices: 81878095--81878168 Score: 60
Period size: 18 Copynumber: 4.0 Consensus size: 17
81878085 AAAGAAAATT
* *
81878095 AATAATAATAATAATGAG
1 AATAATAATAAAAAT-AA
81878113 AATAATAATAAATAA-ATA
1 AATAATAATAAA-AATA-A
81878131 AATAATAACTAGAAAAATAA
1 AATAATAA-T--AAAAATAA
81878151 AATAATAATAACAAATAA
1 AATAATAATAA-AAATAA
81878169 CCAAATAAAT
Statistics
Matches: 47, Mismatches: 2, Indels: 14
0.75 0.03 0.22
Matches are distributed among these distances:
17 3 0.06
18 25 0.53
19 4 0.09
20 11 0.23
21 4 0.09
ACGTcount: A:0.69, C:0.03, G:0.04, T:0.24
Consensus pattern (17 bp):
AATAATAATAAAAATAA
Found at i:81879098 original size:17 final size:17
Alignment explanation
Indices: 81879076--81879110 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
81879066 GGTCAGAGCA
81879076 GTCGATCCCTGTAACAT
1 GTCGATCCCTGTAACAT
81879093 GTCGATCCCTGTAACAT
1 GTCGATCCCTGTAACAT
81879110 G
1 G
81879111 GGTGACTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.29
Consensus pattern (17 bp):
GTCGATCCCTGTAACAT
Found at i:81886007 original size:40 final size:39
Alignment explanation
Indices: 81885842--81886025 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
81885832 AAATTGAATG
* * *
81885842 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
81885882 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
81885922 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
81885962 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
81886001 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
81886026 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:81886050 original size:80 final size:81
Alignment explanation
Indices: 81885882--81886070 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
81885872 GCTGGAAATT
* * * *
81885882 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
81885947 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
81885963 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
81886026 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
81886042 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
81886071 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:81887932 original size:3 final size:3
Alignment explanation
Indices: 81887924--81887949 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
81887914 TTACTTATTT
81887924 ATC ATC ATC ATC ATC ATC ATC ATC AT
1 ATC ATC ATC ATC ATC ATC ATC ATC AT
81887950 GGGATGAAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.31, G:0.00, T:0.35
Consensus pattern (3 bp):
ATC
Found at i:81891311 original size:40 final size:40
Alignment explanation
Indices: 81891256--81891419 Score: 179
Period size: 40 Copynumber: 4.1 Consensus size: 40
81891246 TGAATGATAC
* * *
81891256 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
*
81891296 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATTATAT
* * ** *
81891336 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
* * * *
81891376 TCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
81891416 CCGG
1 CCGG
81891420 TTAAATCCCG
Statistics
Matches: 101, Mismatches: 19, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
39 3 0.03
40 93 0.92
41 5 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
Found at i:81893197 original size:19 final size:19
Alignment explanation
Indices: 81893173--81893210 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
81893163 GAAATGAATA
*
81893173 ATTTCAGGCAAATAGGTTG
1 ATTTCAAGCAAATAGGTTG
81893192 ATTTCAAGCAAATAGGTTG
1 ATTTCAAGCAAATAGGTTG
81893211 GCAATCTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.34, C:0.11, G:0.24, T:0.32
Consensus pattern (19 bp):
ATTTCAAGCAAATAGGTTG
Found at i:81902873 original size:29 final size:32
Alignment explanation
Indices: 81902839--81902902 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 32
81902829 ACTTATTTTA
*
81902839 TTGTTAATTTTGTTATTA-T-T-TTA-AGGAAT
1 TTGTTAA-TTTATTATTATTATTTTAGAGGAAT
*
81902868 TTGTTAATTTATTATTATTATTTTAGAGGCAT
1 TTGTTAATTTATTATTATTATTTTAGAGGAAT
81902900 TTG
1 TTG
81902903 CTTGTTAAGT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
28 9 0.31
29 8 0.28
30 1 0.03
31 3 0.10
32 8 0.28
ACGTcount: A:0.27, C:0.02, G:0.14, T:0.58
Consensus pattern (32 bp):
TTGTTAATTTATTATTATTATTTTAGAGGAAT
Found at i:81902889 original size:31 final size:30
Alignment explanation
Indices: 81902839--81902902 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 30
81902829 ACTTATTTTA
*
81902839 TTGTTAATTTTGTTATTATTTTA-AGGAAT
1 TTGTTAATTTTATTATTATTTTAGAGGAAT
*
81902868 TTGTTAATTTATTATTATTATTTTAGAGGCAT
1 TTGTTAA-TT-TTATTATTATTTTAGAGGAAT
81902900 TTG
1 TTG
81902903 CTTGTTAAGT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
29 7 0.23
30 2 0.07
31 13 0.43
32 8 0.27
ACGTcount: A:0.27, C:0.02, G:0.14, T:0.58
Consensus pattern (30 bp):
TTGTTAATTTTATTATTATTTTAGAGGAAT
Found at i:81910395 original size:9 final size:9
Alignment explanation
Indices: 81910381--81910457 Score: 93
Period size: 9 Copynumber: 8.6 Consensus size: 9
81910371 ATAAGTATAA
81910381 AATTAACCG
1 AATTAACCG
*
81910390 AATTAATCG
1 AATTAACCG
81910399 AATTAACCG
1 AATTAACCG
*
81910408 AATTACCCG
1 AATTAACCG
*
81910417 AATT-ACCTA
1 AATTAACC-G
*
81910426 AATTAATCG
1 AATTAACCG
81910435 AATTAACCG
1 AATTAACCG
*
81910444 AATTAACTG
1 AATTAACCG
81910453 AATTA
1 AATTA
81910458 TTTGTATAAA
Statistics
Matches: 57, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
8 2 0.04
9 53 0.93
10 2 0.04
ACGTcount: A:0.44, C:0.18, G:0.09, T:0.29
Consensus pattern (9 bp):
AATTAACCG
Found at i:81910558 original size:13 final size:13
Alignment explanation
Indices: 81910542--81910566 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
81910532 AATTTTTATG
81910542 ATTGGGTTGGGTA
1 ATTGGGTTGGGTA
81910555 ATTGGGTTGGGT
1 ATTGGGTTGGGT
81910567 TGGGTACTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.00, G:0.48, T:0.40
Consensus pattern (13 bp):
ATTGGGTTGGGTA
Found at i:81910566 original size:18 final size:18
Alignment explanation
Indices: 81910543--81910580 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
81910533 ATTTTTATGA
81910543 TTGGGTTGGGTAATTGGG
1 TTGGGTTGGGTAATTGGG
*
81910561 TTGGGTTGGGTACTTGGG
1 TTGGGTTGGGTAATTGGG
81910579 TT
1 TT
81910581 AATATATATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.08, C:0.03, G:0.47, T:0.42
Consensus pattern (18 bp):
TTGGGTTGGGTAATTGGG
Found at i:81910910 original size:102 final size:102
Alignment explanation
Indices: 81910786--81911013 Score: 438
Period size: 102 Copynumber: 2.2 Consensus size: 102
81910776 AAAAGGGGTA
81910786 ACTTTAAGGAATAAACTGTACTTATTGGCTAGACCAAAAATTCTTAAAATTTTATGGTGAGAAGA
1 ACTTTAAGGAATAAACTGTACTTATTGGCTAGACCAAAAATTCTTAAAATTTTATGGTGAGAAGA
81910851 TATGTAAGTCTAGTTTCAGGGGAAATTAGTGGATCTT
66 TATGTAAGTCTAGTTTCAGGGGAAATTAGTGGATCTT
* *
81910888 ACTTTAAGGAATAAATTGTACTTATTGGCTAGACCAAAAATTCTTAAAATTTTATTGTGAGAAGA
1 ACTTTAAGGAATAAACTGTACTTATTGGCTAGACCAAAAATTCTTAAAATTTTATGGTGAGAAGA
81910953 TATGTAAGTCTAGTTTCAGGGGAAATTAGTGGATCTT
66 TATGTAAGTCTAGTTTCAGGGGAAATTAGTGGATCTT
81910990 ACTTTAAGGAATAAACTGTACTTA
1 ACTTTAAGGAATAAACTGTACTTA
81911014 ACAGCTTGGC
Statistics
Matches: 123, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
102 123 1.00
ACGTcount: A:0.36, C:0.10, G:0.19, T:0.35
Consensus pattern (102 bp):
ACTTTAAGGAATAAACTGTACTTATTGGCTAGACCAAAAATTCTTAAAATTTTATGGTGAGAAGA
TATGTAAGTCTAGTTTCAGGGGAAATTAGTGGATCTT
Found at i:81919214 original size:27 final size:27
Alignment explanation
Indices: 81919181--81919235 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
81919171 TAACTAGTTT
*
81919181 ATAACATCTTTACTTCATTTCATTTAA
1 ATAACATCTTTAATTCATTTCATTTAA
81919208 ATAACATCTTTAATTCATTTCATTTAA
1 ATAACATCTTTAATTCATTTCATTTAA
81919235 A
1 A
81919236 CTCTATACAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.36, C:0.16, G:0.00, T:0.47
Consensus pattern (27 bp):
ATAACATCTTTAATTCATTTCATTTAA
Found at i:81919701 original size:35 final size:35
Alignment explanation
Indices: 81919654--81919815 Score: 211
Period size: 35 Copynumber: 4.6 Consensus size: 35
81919644 TCCTCATTGA
* * *
81919654 AATACCATACCTACATTTCACAACTCTGAATAGATT
1 AATACCATACCTACGTTTCACAACTCAGTAT-GATT
*
81919690 -ATACCATACCTACGTTTCACAACTCAGTATGGTT
1 AATACCATACCTACGTTTCACAACTCAGTATGATT
* *
81919724 AATATCATACCTACATTTCACAACTCAGTATGGA-T
1 AATACCATACCTACGTTTCACAACTCAGTAT-GATT
* *
81919759 GATACCATACCTACGTTTCACAACTCAGTATGGTT
1 AATACCATACCTACGTTTCACAACTCAGTATGATT
*
81919794 AATACCATAACTACGTTTCACA
1 AATACCATACCTACGTTTCACA
81919816 TTTTTCCATG
Statistics
Matches: 110, Mismatches: 13, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
34 4 0.04
35 105 0.95
36 1 0.01
ACGTcount: A:0.35, C:0.25, G:0.09, T:0.31
Consensus pattern (35 bp):
AATACCATACCTACGTTTCACAACTCAGTATGATT
Found at i:81919772 original size:70 final size:70
Alignment explanation
Indices: 81919654--81919815 Score: 261
Period size: 70 Copynumber: 2.3 Consensus size: 70
81919644 TCCTCATTGA
* *
81919654 AATACCATACCTACATTTCACAACTCTGAATAGATTATACCATACCTACGTTTCACAACTCAGTA
1 AATACCATACCTACATTTCACAACTCAGAATAGATGATACCATACCTACGTTTCACAACTCAGTA
81919719 TGGTT
66 TGGTT
* * *
81919724 AATATCATACCTACATTTCACAACTCAGTATGGATGATACCATACCTACGTTTCACAACTCAGTA
1 AATACCATACCTACATTTCACAACTCAGAATAGATGATACCATACCTACGTTTCACAACTCAGTA
81919789 TGGTT
66 TGGTT
* *
81919794 AATACCATAACTACGTTTCACA
1 AATACCATACCTACATTTCACA
81919816 TTTTTCCATG
Statistics
Matches: 84, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
70 84 1.00
ACGTcount: A:0.35, C:0.25, G:0.09, T:0.31
Consensus pattern (70 bp):
AATACCATACCTACATTTCACAACTCAGAATAGATGATACCATACCTACGTTTCACAACTCAGTA
TGGTT
Found at i:81929304 original size:40 final size:40
Alignment explanation
Indices: 81929249--81929466 Score: 348
Period size: 40 Copynumber: 5.5 Consensus size: 40
81929239 GATTATATCA
*
81929249 GGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGCTATTTCC
1 GGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGTTATTTCC
*
81929289 GGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGTTATTTCT
1 GGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGTTATTTCC
81929329 GGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGTTATTTCC
1 GGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGTTATTTCC
* *
81929369 GGGTTAAG-CCCGAAGGCATTCGTGCTGGTCGCTATTTCC
1 GGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGTTATTTCC
* **
81929408 GGGTTAAGTCCCGAAGGCATTTGTGCTGGTTGTTACATCC
1 GGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGTTATTTCC
* *
81929448 GGGCTAAATCCCGAAGGCA
1 GGGTTAAGTCCCGAAGGCA
81929467 ATTGGGTTGG
Statistics
Matches: 165, Mismatches: 12, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
39 37 0.22
40 128 0.78
ACGTcount: A:0.17, C:0.22, G:0.30, T:0.31
Consensus pattern (40 bp):
GGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGTTATTTCC
Found at i:81929427 original size:79 final size:79
Alignment explanation
Indices: 81929249--81929466 Score: 337
Period size: 79 Copynumber: 2.7 Consensus size: 79
81929239 GATTATATCA
*
81929249 GGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGCTATTTCCGGGTTAAGTCCCGAAGGCATTCGTG
1 GGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGTTATTTCCGGGTTAAG-CCCGAAGGCATTCGTG
* * *
81929314 CTGGTTGTTATTTCT
65 CTGGTCGCTATTTCC
81929329 GGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGTTATTTCCGGGTTAAGCCCGAAGGCATTCGTGC
1 GGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGTTATTTCCGGGTTAAGCCCGAAGGCATTCGTGC
81929394 TGGTCGCTATTTCC
66 TGGTCGCTATTTCC
* ** * *
81929408 GGGTTAAGTCCCGAAGGCATTTGTGCTGGTTGTTACATCCGGGCTAAATCCCGAAGGCA
1 GGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGTTATTTCCGGG-TTAAGCCCGAAGGCA
81929467 ATTGGGTTGG
Statistics
Matches: 128, Mismatches: 9, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
79 68 0.53
80 60 0.47
ACGTcount: A:0.17, C:0.22, G:0.30, T:0.31
Consensus pattern (79 bp):
GGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGTTATTTCCGGGTTAAGCCCGAAGGCATTCGTGC
TGGTCGCTATTTCC
Found at i:81930422 original size:35 final size:35
Alignment explanation
Indices: 81930376--81930501 Score: 189
Period size: 35 Copynumber: 3.6 Consensus size: 35
81930366 CCTCATTGAA
*
81930376 ATACCATACCTACATTTCACAACTCCGTATGGATG
1 ATACCATACCTACATTTCACAACTCAGTATGGATG
* * * *
81930411 ATACCTTACCTACGTTTCACAACTCAGTATGGTTA
1 ATACCATACCTACATTTCACAACTCAGTATGGATG
81930446 ATACCATACCTACATTTCACAACTCAGTATGGATG
1 ATACCATACCTACATTTCACAACTCAGTATGGATG
* *
81930481 ATACAATACCTACGTTTCACA
1 ATACCATACCTACATTTCACA
81930502 CTTTCCTATG
Statistics
Matches: 80, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 80 1.00
ACGTcount: A:0.33, C:0.27, G:0.10, T:0.30
Consensus pattern (35 bp):
ATACCATACCTACATTTCACAACTCAGTATGGATG
Found at i:81933374 original size:19 final size:20
Alignment explanation
Indices: 81933350--81933387 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
81933340 GGTACCACCA
81933350 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
81933369 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
81933388 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:81933730 original size:46 final size:46
Alignment explanation
Indices: 81933610--81933737 Score: 145
Period size: 46 Copynumber: 2.8 Consensus size: 46
81933600 TAACCCGCCC
*
81933610 CTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTATAT
1 CTAAGTGAACTCGGACTCAACTCAACGAGTTCGGA--CCTAGTTACAT
* * * * *
81933658 CTCA-CGAACTCAGACTCAACTCAACGAGTTCGGA-C-ATTTGCAT
1 CTAAGTGAACTCGGACTCAACTCAACGAGTTCGGACCTAGTTACAT
81933701 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 -C-TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
81933738 TGCTCAACCA
Statistics
Matches: 68, Mismatches: 9, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
43 5 0.07
44 2 0.03
45 2 0.03
46 28 0.41
47 28 0.41
48 3 0.04
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
CTAAGTGAACTCGGACTCAACTCAACGAGTTCGGACCTAGTTACAT
Found at i:81933756 original size:46 final size:45
Alignment explanation
Indices: 81933613--81933756 Score: 118
Period size: 46 Copynumber: 3.1 Consensus size: 45
81933603 CCCGCCCCTA
*
81933613 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-TATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCT
* * * * *
81933660 CA-CGAACTCAGACTCAACTCAACGAGTTCGGACAT-TTGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCT-CAACCATCT
81933706 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT-CT
81933752 AGTGA
1 AGTGA
81933757 CATGTCACTT
Statistics
Matches: 76, Mismatches: 11, Indels: 20
0.71 0.10 0.19
Matches are distributed among these distances:
44 8 0.11
45 2 0.03
46 32 0.42
47 29 0.38
48 1 0.01
49 3 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCT
Found at i:81940058 original size:93 final size:93
Alignment explanation
Indices: 81939948--81940118 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
81939938 GCCCCTAAGT
* *
81939948 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
81940013 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
81940041 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
81940106 CGAGTTCGGATGC
66 CGAGTTCGGATGC
81940119 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:81940115 original size:46 final size:46
Alignment explanation
Indices: 81939943--81940115 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
81939933 AACCCGCCCC
* * * *
81939943 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
81939989 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
81940037 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
81940082 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
81940116 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 60 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:81947599 original size:40 final size:40
Alignment explanation
Indices: 81947554--81947679 Score: 137
Period size: 40 Copynumber: 3.1 Consensus size: 40
81947544 CGGAATATAA
* *
81947554 CCGGATATAACCA-TGTGCTCAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-AGCACAAATGCCTTCGGGTCTTAGC
* ** * *
81947594 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
81947634 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
81947674 CCGGAT
1 CCGGAT
81947680 GTAATTTCCA
Statistics
Matches: 70, Mismatches: 15, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
40 69 0.99
41 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:81947680 original size:40 final size:39
Alignment explanation
Indices: 81947575--81947682 Score: 139
Period size: 40 Copynumber: 2.7 Consensus size: 39
81947565 CATGTGCTCA
* *
81947575 AATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACG
1 AATGCCTTCGGGTCTTAGCCCGGAT-GTATGACTAGCACG
81947615 AATGCCTTCGGGTCTTAGCCCGGATGTA-GCCACTAGCAC-
1 AATGCCTTCGGGTCTTAGCCCGGATGTATG--ACTAGCACG
*
81947654 AATTGCCTTCGGGTCTTAACCCGGATGTA
1 AA-TGCCTTCGGGTCTTAGCCCGGATGTA
81947683 ATTTCCAGCA
Statistics
Matches: 62, Mismatches: 3, Indels: 6
0.87 0.04 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.06
40 57 0.92
ACGTcount: A:0.21, C:0.28, G:0.26, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGTCTTAGCCCGGATGTATGACTAGCACG
Found at i:81947698 original size:40 final size:40
Alignment explanation
Indices: 81947577--81947719 Score: 130
Period size: 40 Copynumber: 3.6 Consensus size: 40
81947567 TGTGCTCAAA
**
81947577 TGCCTTCGGGTCTTAGCCCGGATAG-AATGACTC-GCACGAA-
1 TGCCTTCGGGTCTTAGCCCGGAT-GTAACCAC-CAGCAC-AAT
* *
81947617 TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAAT
1 TGCCTTCGGGTCTTAGCCCGGATGTAACCACCAGCACAAT
* *** *
81947657 TGCCTTCGGGTCTTAACCCGGATGTAATTTCCAGCATAAT
1 TGCCTTCGGGTCTTAGCCCGGATGTAACCACCAGCACAAT
* * *
81947697 TGTCTTTGGGGCTTAGCCCGGAT
1 TGCCTTCGGGTCTTAGCCCGGAT
81947720 ATCATTCAAT
Statistics
Matches: 85, Mismatches: 15, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
39 3 0.04
40 82 0.96
ACGTcount: A:0.20, C:0.27, G:0.26, T:0.28
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATGTAACCACCAGCACAAT
Found at i:81950737 original size:27 final size:28
Alignment explanation
Indices: 81950681--81950750 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
81950671 AAATTTGTAC
81950681 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
81950709 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
81950736 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
81950751 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:81950761 original size:27 final size:27
Alignment explanation
Indices: 81950681--81950762 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
81950671 AAATTTGTAC
* *
81950681 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
81950709 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
81950736 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
81950763 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:81952332 original size:19 final size:20
Alignment explanation
Indices: 81952308--81952345 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
81952298 GGTACCACCA
81952308 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
81952327 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
81952346 ATCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:81952685 original size:93 final size:93
Alignment explanation
Indices: 81952575--81952745 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
81952565 GCCCCTAAGT
* *
81952575 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
81952640 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
81952668 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
81952733 CGAGTTCGGATGC
66 CGAGTTCGGATGC
81952746 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:81952742 original size:46 final size:46
Alignment explanation
Indices: 81952570--81952742 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
81952560 AACCCGCCCC
* * * *
81952570 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
81952616 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
81952664 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
81952709 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
81952743 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 60 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:81960132 original size:27 final size:28
Alignment explanation
Indices: 81960076--81960145 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
81960066 AAATTTGTAC
81960076 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
81960104 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
81960131 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
81960146 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:81960156 original size:27 final size:27
Alignment explanation
Indices: 81960076--81960157 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
81960066 AAATTTGTAC
* *
81960076 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
81960104 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
81960131 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
81960158 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:81961724 original size:19 final size:20
Alignment explanation
Indices: 81961700--81961737 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
81961690 GGTACCACCA
81961700 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
81961719 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
81961738 ATCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:81962033 original size:46 final size:45
Alignment explanation
Indices: 81961966--81962129 Score: 181
Period size: 46 Copynumber: 3.6 Consensus size: 45
81961956 CGCCCCTAAG
*
81961966 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGGCGTT-GCATCCATAAA
* *
81962012 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-T-CA
1 TGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTGCATCCATAAA
* * * *
81962059 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGGC-GTTGCATCCATAAA
81962105 TGAACTCGGACTCAACTCAACGAGT
1 TGAACTCGGACTCAACTCAACGAGT
81962130 CCGGATGCTC
Statistics
Matches: 100, Mismatches: 10, Indels: 16
0.79 0.08 0.13
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 1 0.01
46 52 0.52
47 29 0.29
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (45 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGGCGTTGCATCCATAAA
Found at i:81962077 original size:93 final size:93
Alignment explanation
Indices: 81961967--81962137 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
81961957 GCCCCTAAGT
* *
81961967 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
*
81962032 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTCCGGATGCCTAGTTACATCTCAC
* * *
81962060 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
81962125 CGAGTCCGGATGC
66 CGAGTCCGGATGC
81962138 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTCCGGATGCCTAGTTACATCTCAC
Found at i:81962153 original size:46 final size:46
Alignment explanation
Indices: 81961961--81962146 Score: 127
Period size: 46 Copynumber: 4.0 Consensus size: 46
81961951 TAACCCGCCC
* * * * *
81961961 CTAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA-
1 CTAAGTGAACTCGGACTCAACTCAACGAG-TCCGG-ATGCTCAACCAT
* *
81962008 -TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CAT
1 CTAAGTGAACTCGGACTCAACTCAACGAGTCCGGATGCTC-A---ACCAT
* * * * *
81962055 CTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACAT-TTGCATCCA-
1 CTAAGTGAACTCGGACTCAACTCAACGAGTCCGG--ATGCT-CAACCAT
81962101 -TAAGTGAACTCGGACTCAACTCAACGAGTCCGGATGCTCAACCAT
1 CTAAGTGAACTCGGACTCAACTCAACGAGTCCGGATGCTCAACCAT
81962146 C
1 C
81962147 CTAGTGACAT
Statistics
Matches: 109, Mismatches: 15, Indels: 31
0.70 0.10 0.20
Matches are distributed among these distances:
43 1 0.01
44 10 0.09
45 6 0.06
46 56 0.51
47 30 0.28
48 2 0.02
49 3 0.03
50 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.22
Consensus pattern (46 bp):
CTAAGTGAACTCGGACTCAACTCAACGAGTCCGGATGCTCAACCAT
Found at i:81963826 original size:34 final size:35
Alignment explanation
Indices: 81963741--81963829 Score: 101
Period size: 35 Copynumber: 2.6 Consensus size: 35
81963731 GACTATCTCT
*
81963741 TATGAGCATC-GGTGTGTTTTGGAGGGATTGGCTCA
1 TATGAGCATCTGGTGTG-TTTGGAGGGATTAGCTCA
* * * *
81963776 TATGAGCTTTTTGTGTGTTTGGAGGGATTAG-TCG
1 TATGAGCATCTGGTGTGTTTGGAGGGATTAGCTCA
*
81963810 TGTGAGCATCTGGTGTGTTT
1 TATGAGCATCTGGTGTGTTT
81963830 TGGTTGAACT
Statistics
Matches: 44, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
34 18 0.41
35 21 0.48
36 5 0.11
ACGTcount: A:0.15, C:0.09, G:0.36, T:0.40
Consensus pattern (35 bp):
TATGAGCATCTGGTGTGTTTGGAGGGATTAGCTCA
Found at i:81966591 original size:18 final size:17
Alignment explanation
Indices: 81966557--81966598 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
81966547 ATATGATTTT
*
81966557 TTCAAAAACTCTCAAAA
1 TTCAAAAACTATCAAAA
*
81966574 TTCAAAAACATATGAAAA
1 TTCAAAAAC-TATCAAAA
81966592 TT-AAAAA
1 TTCAAAAA
81966599 AATTGTAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 14 0.64
18 8 0.36
ACGTcount: A:0.60, C:0.14, G:0.02, T:0.24
Consensus pattern (17 bp):
TTCAAAAACTATCAAAA
Found at i:81976152 original size:34 final size:34
Alignment explanation
Indices: 81976114--81976192 Score: 86
Period size: 34 Copynumber: 2.3 Consensus size: 34
81976104 GTATCAGTTA
* * ** * *
81976114 GGCCTTAGCCTATTTCTTTAACAGTAGCGGTCTG
1 GGCCTAAGCCCATTTCAGTAACAGTAACAGTCTG
* *
81976148 GGCCTGAGCCCATTTCAGTAATAGTAACAGTCTG
1 GGCCTAAGCCCATTTCAGTAACAGTAACAGTCTG
81976182 GGCCTAAGCCC
1 GGCCTAAGCCC
81976193 GTTAACATAT
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.28
Consensus pattern (34 bp):
GGCCTAAGCCCATTTCAGTAACAGTAACAGTCTG
Found at i:81979148 original size:2 final size:2
Alignment explanation
Indices: 81979141--81979168 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
81979131 ACACATTCGA
81979141 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
81979169 CATTAACATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:81982729 original size:17 final size:17
Alignment explanation
Indices: 81982707--81982741 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
81982697 CTTGCCCTTA
81982707 CGCCCAAATCTCAGCAC
1 CGCCCAAATCTCAGCAC
81982724 CGCCCAAATCTCAGCAC
1 CGCCCAAATCTCAGCAC
81982741 C
1 C
81982742 TTCTTTCATG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.29, C:0.49, G:0.11, T:0.11
Consensus pattern (17 bp):
CGCCCAAATCTCAGCAC
Found at i:81988504 original size:18 final size:17
Alignment explanation
Indices: 81988473--81988515 Score: 52
Period size: 19 Copynumber: 2.5 Consensus size: 17
81988463 TTCCTATGTG
81988473 GGGCCCAAGACCCA-TT
1 GGGCCCAAGACCCAGTT
81988489 GGGCCCACACGACCCAGTT
1 GGGCCCA-A-GACCCAGTT
*
81988508 CGGCCCAA
1 GGGCCCAA
81988516 AATGGCCCAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
16 7 0.30
17 1 0.04
18 7 0.30
19 8 0.35
ACGTcount: A:0.23, C:0.42, G:0.26, T:0.09
Consensus pattern (17 bp):
GGGCCCAAGACCCAGTT
Found at i:81990996 original size:13 final size:13
Alignment explanation
Indices: 81990978--81991011 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
81990968 CGTGCCAATT
81990978 GACGCACGGCTAA
1 GACGCACGGCTAA
*
81990991 GACGCACGGCTGA
1 GACGCACGGCTAA
*
81991004 GACACACG
1 GACGCACG
81991012 CCCGTGTCTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.29, C:0.32, G:0.32, T:0.06
Consensus pattern (13 bp):
GACGCACGGCTAA
Found at i:81994483 original size:2 final size:2
Alignment explanation
Indices: 81994476--81994511 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
81994466 GGATCATCTC
81994476 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
81994512 CACAATTATA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:81995599 original size:20 final size:18
Alignment explanation
Indices: 81995552--81995659 Score: 62
Period size: 20 Copynumber: 5.8 Consensus size: 18
81995542 CAAGATAAAC
81995552 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
81995569 ATTAAGA-TAATCACTTTAAT
1 ATTAA-ATTAAT-A-TTTAAT
** *
81995589 ATTAAATTAATAAAATACT
1 ATTAAATTAAT-ATTTAAT
*
81995608 ATTAAGATAAATA-TT-AT
1 ATTAA-ATTAATATTTAAT
*
81995625 ATTAAATTTAATATTAAATCT
1 ATTAAA-TTAATATTTAA--T
*
81995646 ATTAAAATAATATT
1 ATTAAATTAATATT
81995660 GTTTTTAGAA
Statistics
Matches: 70, Mismatches: 10, Indels: 19
0.71 0.10 0.19
Matches are distributed among these distances:
16 1 0.01
17 19 0.27
18 3 0.04
19 12 0.17
20 28 0.40
21 7 0.10
ACGTcount: A:0.52, C:0.04, G:0.02, T:0.43
Consensus pattern (18 bp):
ATTAAATTAATATTTAAT
Found at i:82004550 original size:40 final size:40
Alignment explanation
Indices: 82004505--82004672 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
82004495 CGGAATATAA
82004505 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
82004545 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
82004585 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
82004625 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
82004665 CCGGATAT
1 CCGGATAT
82004673 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:82007686 original size:23 final size:23
Alignment explanation
Indices: 82007652--82007707 Score: 87
Period size: 23 Copynumber: 2.4 Consensus size: 23
82007642 TAGGGAGGCC
*
82007652 TTGTGGACTTGCAACGGCTAGGG
1 TTGTGGATTTGCAACGGCTAGGG
82007675 TTGTGGATTTGCAACGGCTAGGG
1 TTGTGGATTTGCAACGGCTAGGG
82007698 TTAG-GGATTT
1 TT-GTGGATTT
82007708 TGGGTGAAGA
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
23 30 0.97
24 1 0.03
ACGTcount: A:0.18, C:0.12, G:0.38, T:0.32
Consensus pattern (23 bp):
TTGTGGATTTGCAACGGCTAGGG
Found at i:82013186 original size:40 final size:40
Alignment explanation
Indices: 82013101--82013251 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
82013091 AATTGAATGA
* * *
82013101 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
82013141 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
82013182 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
82013221 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
82013252 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:82013265 original size:40 final size:40
Alignment explanation
Indices: 82013138--82013267 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
82013128 ATGCTGGAAA
* * * *
82013138 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
82013178 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
82013218 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
82013258 TTATATCCGG
1 TTATATCCGG
82013268 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:82021196 original size:40 final size:40
Alignment explanation
Indices: 82021111--82021261 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
82021101 AATTGAATGA
* * *
82021111 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
82021151 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
82021192 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
82021231 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
82021262 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:82021275 original size:40 final size:40
Alignment explanation
Indices: 82021148--82021277 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
82021138 ATGCTGGAAA
* * * *
82021148 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
82021188 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
82021228 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
82021268 TTATATCCGG
1 TTATATCCGG
82021278 TTATGTTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:82026482 original size:39 final size:40
Alignment explanation
Indices: 82026439--82026521 Score: 109
Period size: 39 Copynumber: 2.1 Consensus size: 40
82026429 ATACACTAGG
82026439 CAATTTCAGTCT-GGGCCTAAGCCCATT-TCAGTAACAGT-T
1 CAATTTCAGT-TAGGGCCTAAGCCCATTAT-AGTAACAGTAT
* *
82026478 CAATTTCAGTTAGGGCCTTAGCCCATTATAGTATCAGTAT
1 CAATTTCAGTTAGGGCCTAAGCCCATTATAGTAACAGTAT
82026518 CAAT
1 CAAT
82026522 GTAGGCCTTA
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
38 1 0.03
39 32 0.82
40 6 0.15
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.33
Consensus pattern (40 bp):
CAATTTCAGTTAGGGCCTAAGCCCATTATAGTAACAGTAT
Found at i:82029210 original size:24 final size:25
Alignment explanation
Indices: 82029164--82029210 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
82029154 AGTAGCTCAT
* *
82029164 AAGAGCCATAATCGGGAAGTTCACA
1 AAGAACCATAATCGGGAAATTCACA
82029189 AAGAACCAT-ATCGGGAAATTCA
1 AAGAACCATAATCGGGAAATTCA
82029211 ATCGAGCACT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 12 0.60
25 8 0.40
ACGTcount: A:0.43, C:0.19, G:0.21, T:0.17
Consensus pattern (25 bp):
AAGAACCATAATCGGGAAATTCACA
Found at i:82031913 original size:47 final size:48
Alignment explanation
Indices: 82031801--82031916 Score: 180
Period size: 48 Copynumber: 2.4 Consensus size: 48
82031791 TATATATATG
* *
82031801 TGTGGTAAAGCCGAATGGCTAATATGAGACATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATATGAAACATGTATGAGAGATGTATA
* *
82031849 TGTGGTAAAGCCAAATGGCTAATATGAAATATGTATGAG-GATGTATA
1 TGTGGTAAAGCCGAATGGCTAATATGAAACATGTATGAGAGATGTATA
*
82031896 TTTGGTAAAGCCGAATGGCTA
1 TGTGGTAAAGCCGAATGGCTA
82031917 TTGTGCAATA
Statistics
Matches: 62, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
47 26 0.42
48 36 0.58
ACGTcount: A:0.35, C:0.09, G:0.27, T:0.29
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAATATGAAACATGTATGAGAGATGTATA
Found at i:82032128 original size:37 final size:37
Alignment explanation
Indices: 82032078--82032154 Score: 127
Period size: 37 Copynumber: 2.1 Consensus size: 37
82032068 ATATATTCCA
* *
82032078 GGTAAGACCCGATGACTACGTGTGGAGATTCTGTCCG
1 GGTAAGACCCGATGACCACGTGTGGAGATTCTATCCG
*
82032115 GGTAAGACCCGATGACCACGTGTGGAGATTTTATCCG
1 GGTAAGACCCGATGACCACGTGTGGAGATTCTATCCG
82032152 GGT
1 GGT
82032155 TAAAACCCCG
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.22, C:0.21, G:0.32, T:0.25
Consensus pattern (37 bp):
GGTAAGACCCGATGACCACGTGTGGAGATTCTATCCG
Found at i:82035101 original size:17 final size:17
Alignment explanation
Indices: 82035079--82035116 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
82035069 AAACTGAATC
* *
82035079 TTTTCGGTTTATTTAAT
1 TTTTCGATTTAATTAAT
82035096 TTTTCGATTTAATTAAT
1 TTTTCGATTTAATTAAT
82035113 TTTT
1 TTTT
82035117 ATATTCAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.21, C:0.05, G:0.08, T:0.66
Consensus pattern (17 bp):
TTTTCGATTTAATTAAT
Found at i:82044938 original size:31 final size:32
Alignment explanation
Indices: 82044903--82044963 Score: 90
Period size: 32 Copynumber: 1.9 Consensus size: 32
82044893 TTGATCTAAT
*
82044903 AAATATCTTTT-ACTAATTAATA-ATAAATATA
1 AAATATATTTTCACTAATT-ATACATAAATATA
82044934 AAATATATTTTCACTAATTATACATAAATA
1 AAATATATTTTCACTAATTATACATAAATA
82044964 ATACAAATGT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
31 13 0.48
32 14 0.52
ACGTcount: A:0.51, C:0.08, G:0.00, T:0.41
Consensus pattern (32 bp):
AAATATATTTTCACTAATTATACATAAATATA
Found at i:82045062 original size:15 final size:14
Alignment explanation
Indices: 82045041--82045111 Score: 67
Period size: 15 Copynumber: 5.0 Consensus size: 14
82045031 AATTTATTTC
82045041 ATAATATAATAATA
1 ATAATATAATAATA
*
82045055 ATTAATATAAT--TT
1 A-TAATATAATAATA
*
82045068 ATAGCT-TAATAATA
1 ATA-ATATAATAATA
82045082 ATAATAATAATAATA
1 ATAAT-ATAATAATA
82045097 ATAATAATAATAATA
1 ATAAT-ATAATAATA
82045112 TCTTTTTACT
Statistics
Matches: 47, Mismatches: 4, Indels: 11
0.76 0.06 0.18
Matches are distributed among these distances:
12 6 0.13
13 4 0.09
14 5 0.11
15 32 0.68
ACGTcount: A:0.59, C:0.01, G:0.01, T:0.38
Consensus pattern (14 bp):
ATAATATAATAATA
Found at i:82045064 original size:12 final size:13
Alignment explanation
Indices: 82045046--82045110 Score: 64
Period size: 12 Copynumber: 4.8 Consensus size: 13
82045036 ATTTCATAAT
82045046 ATAATAATAATTA
1 ATAATAATAATTA
82045059 AT-ATAATTTATAGCTTA
1 ATAATAA--TA-A--TTA
82045076 ATAATAATAA-TA
1 ATAATAATAATTA
82045088 ATAATAATAA-TA
1 ATAATAATAATTA
82045100 ATAATAATAAT
1 ATAATAATAAT
82045111 ATCTTTTTAC
Statistics
Matches: 45, Mismatches: 0, Indels: 14
0.76 0.00 0.24
Matches are distributed among these distances:
12 28 0.62
13 2 0.04
14 2 0.04
15 2 0.04
16 2 0.04
17 5 0.11
18 4 0.09
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (13 bp):
ATAATAATAATTA
Found at i:82045082 original size:3 final size:3
Alignment explanation
Indices: 82045074--82045111 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
82045064 ATTTATAGCT
82045074 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
82045112 TCTTTTTACT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:82049530 original size:28 final size:28
Alignment explanation
Indices: 82049486--82049593 Score: 116
Period size: 27 Copynumber: 3.9 Consensus size: 28
82049476 GGATGCCTGA
* *
82049486 ACAGATAA-TGTGACAGAGTCACCAGAT
1 ACAGATAATTGTGGCAGAGCCACCAGAT
* *
82049513 ACAAATAATTGTGGCAGAGCCACCA-AA
1 ACAGATAATTGTGGCAGAGCCACCAGAT
*
82049540 ACAGAT-ATATGGGGCAGAGCCACCAGAT
1 ACAGATAAT-TGTGGCAGAGCCACCAGAT
*
82049568 -CAGATAATTTGTGGCATAGCCACCAG
1 ACAGATAA-TTGTGGCAGAGCCACCAG
82049594 GACGCTTCCT
Statistics
Matches: 67, Mismatches: 9, Indels: 9
0.79 0.11 0.11
Matches are distributed among these distances:
26 2 0.03
27 33 0.49
28 31 0.46
29 1 0.01
ACGTcount: A:0.38, C:0.21, G:0.23, T:0.18
Consensus pattern (28 bp):
ACAGATAATTGTGGCAGAGCCACCAGAT
Found at i:82049564 original size:55 final size:54
Alignment explanation
Indices: 82049485--82049592 Score: 146
Period size: 55 Copynumber: 2.0 Consensus size: 54
82049475 TGGATGCCTG
* *
82049485 AACAGATAATGTGACAGAGTCACCAGATACAAATAA-TTGTGGCAGAGCCACCAA
1 AACAGATAATGGGACAGAGCCACCAGAT-CAAATAATTTGTGGCAGAGCCACCAA
* * *
82049539 AACAGATATATGGGGCAGAGCCACCAGATCAGATAATTTGTGGCATAGCCACCA
1 AACAGATA-ATGGGACAGAGCCACCAGATCAAATAATTTGTGGCAGAGCCACCA
82049593 GGACGCTTCC
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
54 14 0.30
55 33 0.70
ACGTcount: A:0.39, C:0.21, G:0.22, T:0.18
Consensus pattern (54 bp):
AACAGATAATGGGACAGAGCCACCAGATCAAATAATTTGTGGCAGAGCCACCAA
Found at i:82051057 original size:24 final size:24
Alignment explanation
Indices: 82051025--82051098 Score: 130
Period size: 24 Copynumber: 3.1 Consensus size: 24
82051015 ACACAGTTCA
*
82051025 CCCTAATCAGCTCCTAAATCCTCT
1 CCCTGATCAGCTCCTAAATCCTCT
82051049 CCCTGATCAGCTCCTAAATCCTCT
1 CCCTGATCAGCTCCTAAATCCTCT
*
82051073 CCCTGATCAGCTCCTAAATCTTCT
1 CCCTGATCAGCTCCTAAATCCTCT
82051097 CC
1 CC
82051099 AGACAGACTT
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 48 1.00
ACGTcount: A:0.22, C:0.42, G:0.07, T:0.30
Consensus pattern (24 bp):
CCCTGATCAGCTCCTAAATCCTCT
Found at i:82055795 original size:32 final size:30
Alignment explanation
Indices: 82055746--82055808 Score: 83
Period size: 32 Copynumber: 2.0 Consensus size: 30
82055736 TAAACATCTA
*
82055746 ATAAAAATCTTTTACTAATTAATA-ATAAAT
1 ATAAAAATATTTTACTAATT-ATACATAAAT
82055776 ATAAAATATATTTTCACTAATTATACATAAAT
1 ATAAAA-ATATTTT-ACTAATTATACATAAAT
82055808 A
1 A
82055809 ATACAAATGT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
30 6 0.21
31 9 0.31
32 14 0.48
ACGTcount: A:0.52, C:0.08, G:0.00, T:0.40
Consensus pattern (30 bp):
ATAAAAATATTTTACTAATTATACATAAAT
Found at i:82055926 original size:3 final size:3
Alignment explanation
Indices: 82055918--82055970 Score: 106
Period size: 3 Copynumber: 17.7 Consensus size: 3
82055908 ATCTATAGCT
82055918 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
82055966 TAA TA
1 TAA TA
82055971 TCTTTTTACT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:82061923 original size:45 final size:48
Alignment explanation
Indices: 82061760--82061980 Score: 158
Period size: 46 Copynumber: 4.7 Consensus size: 48
82061750 AAATGAAAGC
* * ** * *
82061760 CAGTGTAAGATCATATCTGGGACATGGCATCGGCGTTG-AGACGAGAG-
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGC-ACGAAGATGTGAGA
* * * *
82061807 CTAGTATAAGA-CATGTCTGGGACAT-ACATCGCCCTCG-AGATGTGAG-
1 C-AGTGTAAGACCATGTCTGGGACATGGCATCG-GCACGAAGATGTGAGA
* * * *
82061853 CTACTGTGAGA-CATGTCTAGGACAT-GCATCGGCTAC-AAGATGTG-TA
1 C-AGTGTAAGACCATGTCTGGGACATGGCATCGGC-ACGAAGATGTGAGA
* *
82061899 -AGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGATATGTGAGA
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGAAGATGTGAGA
82061946 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGG
1 -C-AGTGTAAGACCATGTCTGGGACATGGCATCGG
82061981 TCTCGATTTT
Statistics
Matches: 141, Mismatches: 21, Indels: 21
0.77 0.11 0.11
Matches are distributed among these distances:
44 7 0.05
45 16 0.11
46 62 0.44
47 16 0.11
48 8 0.06
50 32 0.23
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.23
Consensus pattern (48 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGAAGATGTGAGA
Found at i:82067433 original size:23 final size:23
Alignment explanation
Indices: 82067359--82067434 Score: 79
Period size: 21 Copynumber: 3.5 Consensus size: 23
82067349 CCTGATTAGT
* *
82067359 ATACGACACATAAAGTGCCT-AA
1 ATACGACACATGAGGTGCCTGAA
**
82067381 A-ACGACACATGAGGTGTTTG--
1 ATACGACACATGAGGTGCCTGAA
*
82067401 ATACGGCACATGAGGTGCCTGAA
1 ATACGACACATGAGGTGCCTGAA
82067424 ATACGACACAT
1 ATACGACACAT
82067435 AAAGTGCTTG
Statistics
Matches: 42, Mismatches: 8, Indels: 7
0.74 0.14 0.12
Matches are distributed among these distances:
20 1 0.02
21 30 0.71
22 1 0.02
23 10 0.24
ACGTcount: A:0.37, C:0.21, G:0.22, T:0.20
Consensus pattern (23 bp):
ATACGACACATGAGGTGCCTGAA
Found at i:82068698 original size:31 final size:31
Alignment explanation
Indices: 82068663--82068736 Score: 123
Period size: 31 Copynumber: 2.4 Consensus size: 31
82068653 CTTATAGCTT
82068663 ACTTTACATTTCAATCCCTTTATCTACTCTA
1 ACTTTACATTTCAATCCCTTTATCTACTCTA
*
82068694 ACTTTACATTTCAATCCCTTTATCTATTCTA
1 ACTTTACATTTCAATCCCTTTATCTACTCTA
*
82068725 AC-TTAAATTTCA
1 ACTTTACATTTCA
82068737 TTCAATTAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
30 9 0.22
31 32 0.78
ACGTcount: A:0.28, C:0.26, G:0.00, T:0.46
Consensus pattern (31 bp):
ACTTTACATTTCAATCCCTTTATCTACTCTA
Found at i:82069000 original size:17 final size:18
Alignment explanation
Indices: 82068972--82069017 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
82068962 GCTTTCTGTT
82068972 TTCT-TTTC-TTTCTTC-
1 TTCTATTTCTTTTCTTCA
* *
82068987 TTTTGTTTCTTTTCTTCA
1 TTCTATTTCTTTTCTTCA
82069005 TTCTATTTCTTTT
1 TTCTATTTCTTTT
82069018 ATTTGTTTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
15 3 0.12
16 4 0.16
17 7 0.28
18 11 0.44
ACGTcount: A:0.04, C:0.20, G:0.02, T:0.74
Consensus pattern (18 bp):
TTCTATTTCTTTTCTTCA
Found at i:82073104 original size:29 final size:29
Alignment explanation
Indices: 82073071--82073135 Score: 121
Period size: 29 Copynumber: 2.2 Consensus size: 29
82073061 GTGACGAGAT
82073071 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
82073100 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
82073129 CGGCACT
1 TGGCACT
82073136 GGGTGTGCGA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:82075950 original size:46 final size:46
Alignment explanation
Indices: 82075900--82076382 Score: 639
Period size: 46 Copynumber: 10.5 Consensus size: 46
82075890 CCATAGTGTA
* * * * *
82075900 TTTCAACTATGGTCTTACTCATTTTCTGTCAGGTTGCCATGGTATC
1 TTTCAACCATGGTCTTACACATTTTATATCATGTTGCCATGGTATC
* *** * * **
82075946 TTTCAACCATGGCCTTGTTCATTTTATGTTACATTGCCATGGTATC
1 TTTCAACCATGGTCTTACACATTTTATATCATGTTGCCATGGTATC
** **
82075992 TTTCAACCATGGTCTTATTCATTCCCATA--ATGTTGCCATGGTATC
1 TTTCAACCATGGTCTTACACATT-TTATATCATGTTGCCATGGTATC
** * * *
82076037 TTTCAACCATGGTCTTATTC-TTTTCATGTCACGTTGCCATGTTATC
1 TTTCAACCATGGTCTTACACATTTT-ATATCATGTTGCCATGGTATC
*
82076083 TTTCAACCATGGTCTTACACATTTTATATCCTGTTGCCATGGTATC
1 TTTCAACCATGGTCTTACACATTTTATATCATGTTGCCATGGTATC
*
82076129 TTTCAACCATGGTCTTACACATTTTATATCCTGTTGCCATGGTATC
1 TTTCAACCATGGTCTTACACATTTTATATCATGTTGCCATGGTATC
* * * *
82076175 TTTCAACCATGGCCTTACACATTTCATATAATGTTGCCATGGTGTC
1 TTTCAACCATGGTCTTACACATTTTATATCATGTTGCCATGGTATC
*
82076221 TTTCAACCATGGTCTTACACATTTGATATCATGTTGCCATGGTATC
1 TTTCAACCATGGTCTTACACATTTTATATCATGTTGCCATGGTATC
* * *
82076267 TTTCAACCATGGTCTTACATATTTCATATCATGTTGCCATGGTGTC
1 TTTCAACCATGGTCTTACACATTTTATATCATGTTGCCATGGTATC
82076313 TTTCAACCATGGTCTTACACATTTTATATCATGTTGCCATGGTATC
1 TTTCAACCATGGTCTTACACATTTTATATCATGTTGCCATGGTATC
82076359 TTTCAACCATGGTCTTACACATTT
1 TTTCAACCATGGTCTTACACATTT
82076383 CATTTCAGAA
Statistics
Matches: 391, Mismatches: 41, Indels: 10
0.88 0.09 0.02
Matches are distributed among these distances:
44 4 0.01
45 34 0.09
46 347 0.89
47 6 0.02
ACGTcount: A:0.22, C:0.23, G:0.14, T:0.41
Consensus pattern (46 bp):
TTTCAACCATGGTCTTACACATTTTATATCATGTTGCCATGGTATC
Found at i:82079440 original size:12 final size:12
Alignment explanation
Indices: 82079405--82079445 Score: 66
Period size: 12 Copynumber: 3.5 Consensus size: 12
82079395 GTTATGTTCT
*
82079405 CGAGTTTCAAGA
1 CGAGTTTCAAGG
82079417 CGAGTTTCAAGG
1 CGAGTTTCAAGG
82079429 CGAGTTTCAAGG
1 CGAGTTTCAAGG
82079441 C-AGTT
1 CGAGTT
82079446 GGGAAAAGTA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
11 4 0.14
12 24 0.86
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (12 bp):
CGAGTTTCAAGG
Found at i:82081442 original size:48 final size:48
Alignment explanation
Indices: 82081343--82081659 Score: 216
Period size: 46 Copynumber: 6.8 Consensus size: 48
82081333 GTTATTGTGT
* * * *
82081343 GCTAGTGTAAGA-CGTGTCTGGGACAT-GCATTGGCCATATTA-TG-AGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-CAT-TGAGAGAAGA
* * *
82081389 GCTAGTATAAGACCATGTTTGGGACATGGCATCGGCATTGAGACAAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGAGAAGA
* * *
82081437 GCTAGTGTAAGA-AATGTCTGGGACAT-GCATCGGCATCGAGATG-TGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGA-GAAGA
* * ** * *
82081483 GCCAGTGTAAGA-CATGTTTGGGACAT-GCATCGGC-TACA-AGATGT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGAGAAGA
* * * * * *
82081527 GTTAGTGTAAGACCATGTTTGGGACATGGCATCAGCA-TGTATAGAGGT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTG-AGAGAAGA
**
82081575 G-TCAGTGTAAGACCATGTCTGGGACATGGCATCAAC-TTGATG-GATA-A
1 GCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA-GAGA-AGA
* * *
82081622 GCCAGTATAAGACAATGTCTGGGACATGGCATCGGCAT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
82081660 CATATGTAAC
Statistics
Matches: 219, Mismatches: 35, Indels: 32
0.77 0.12 0.11
Matches are distributed among these distances:
43 1 0.00
44 13 0.06
45 16 0.07
46 67 0.31
47 62 0.28
48 60 0.27
ACGTcount: A:0.28, C:0.16, G:0.30, T:0.25
Consensus pattern (48 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGAGAAGA
Found at i:82083266 original size:40 final size:40
Alignment explanation
Indices: 82083023--82083266 Score: 255
Period size: 40 Copynumber: 6.1 Consensus size: 40
82083013 CGGAATTTAA
** * * *
82083023 CCGGATATAGCT-ACTCGTTCAAACGCCTTCAGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * * * *
82083063 CCGGTTATAGCAACTCGCATAAACGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
82083103 CCGGATTTAGTAACTCGCATAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
82083143 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
82083182 CCGGGAT-TAGTAACTCGCACAAATGCCTTC-GGATCCTAGT
1 CC-GGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
82083222 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
82083262 CCGGA
1 CCGGA
82083267 CATCATTCGA
Statistics
Matches: 177, Mismatches: 20, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
38 2 0.01
39 34 0.19
40 130 0.73
41 11 0.06
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:82091960 original size:33 final size:34
Alignment explanation
Indices: 82091923--82091990 Score: 93
Period size: 34 Copynumber: 2.0 Consensus size: 34
82091913 ATAAGTTTAA
* *
82091923 TTATTATTTAATA-TAAAATAATTTGAATATATT
1 TTATTATTTAATATTAAAATAATTTAAAAATATT
* *
82091956 TTATTATTTATTATTAATATAATTTAAAAATATT
1 TTATTATTTAATATTAAAATAATTTAAAAATATT
82091990 T
1 T
82091991 AAATTTTATT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
33 12 0.40
34 18 0.60
ACGTcount: A:0.44, C:0.00, G:0.01, T:0.54
Consensus pattern (34 bp):
TTATTATTTAATATTAAAATAATTTAAAAATATT
Found at i:82092246 original size:21 final size:21
Alignment explanation
Indices: 82092199--82092253 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
82092189 ACGACTATTT
* * *
82092199 CTAATCTCATCACTACATTAT
1 CTAATCTCACCACTACAGTAA
*
82092220 CCAATCTCACCACTACAGTAA
1 CTAATCTCACCACTACAGTAA
82092241 CTAATCTCACCAC
1 CTAATCTCACCAC
82092254 CACCACTATT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.35, C:0.36, G:0.02, T:0.27
Consensus pattern (21 bp):
CTAATCTCACCACTACAGTAA
Found at i:82094958 original size:40 final size:39
Alignment explanation
Indices: 82094793--82094976 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
82094783 AAATTGAATG
* * *
82094793 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
82094833 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
82094873 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
82094913 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
82094952 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
82094977 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:82095001 original size:80 final size:81
Alignment explanation
Indices: 82094833--82095021 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
82094823 GCTGGAAATT
* * * *
82094833 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
82094898 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
82094914 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
82094977 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
82094993 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
82095022 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:82095585 original size:46 final size:46
Alignment explanation
Indices: 82095457--82095597 Score: 189
Period size: 46 Copynumber: 3.0 Consensus size: 46
82095447 CANCGGGCGT
82095457 TCGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC
1 TCGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG-C
* * * *
82095504 TAGTTACAT-C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGC
1 TCG---CATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
82095550 TCGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 TCGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
82095596 TC
1 TC
82095598 AACCATCCTA
Statistics
Matches: 80, Mismatches: 8, Indels: 13
0.79 0.08 0.13
Matches are distributed among these distances:
43 3 0.04
44 1 0.01
45 2 0.03
46 36 0.45
47 32 0.40
48 2 0.03
49 1 0.01
50 3 0.04
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.22
Consensus pattern (46 bp):
TCGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
Found at i:82106573 original size:20 final size:20
Alignment explanation
Indices: 82106510--82106573 Score: 53
Period size: 20 Copynumber: 3.3 Consensus size: 20
82106500 CAATCTCAAT
* *
82106510 CATATAAACAGTAATTCATT
1 CATATAAACAGTACTTCATC
* *
82106530 CA-AT-AACAGAAAC-TCCTC
1 CATATAAACAG-TACTTCATC
*
82106548 CTTATAAACAGTACTTCATC
1 CATATAAACAGTACTTCATC
82106568 CATATA
1 CATATA
82106574 TCAGTAATTC
Statistics
Matches: 32, Mismatches: 8, Indels: 8
0.67 0.17 0.17
Matches are distributed among these distances:
18 9 0.28
19 7 0.22
20 16 0.50
ACGTcount: A:0.42, C:0.23, G:0.05, T:0.30
Consensus pattern (20 bp):
CATATAAACAGTACTTCATC
Found at i:82107771 original size:10 final size:10
Alignment explanation
Indices: 82107756--82107796 Score: 82
Period size: 10 Copynumber: 4.1 Consensus size: 10
82107746 AAATACCTTA
82107756 ATATATGTCC
1 ATATATGTCC
82107766 ATATATGTCC
1 ATATATGTCC
82107776 ATATATGTCC
1 ATATATGTCC
82107786 ATATATGTCC
1 ATATATGTCC
82107796 A
1 A
82107797 CTCACCCTTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 31 1.00
ACGTcount: A:0.32, C:0.20, G:0.10, T:0.39
Consensus pattern (10 bp):
ATATATGTCC
Found at i:82109164 original size:2 final size:2
Alignment explanation
Indices: 82109157--82109182 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
82109147 GCTCTTGCAC
82109157 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
82109183 GTTTGCACAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:82109979 original size:40 final size:40
Alignment explanation
Indices: 82109892--82110113 Score: 272
Period size: 40 Copynumber: 5.6 Consensus size: 40
82109882 AATGATGTCT
* * *
82109892 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCC
* * * * *
82109932 GGACTAAGAT-CCGAAGGCATTCGTGCAAGTTACTAATTCT
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCC
*
82109972 GGGCTAAG-GCCGAAGGCATTTGTGCGAGTTACTAAATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCC
* *
82110011 GGGTTAAGTCCCAAAGGCATTTGTGCGAGTTACTAAATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCC
*
82110051 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCC
*
82110091 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
82110114 AACGAGTAGC
Statistics
Matches: 160, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
39 33 0.21
40 118 0.74
41 9 0.06
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCC
Found at i:82110135 original size:119 final size:119
Alignment explanation
Indices: 82109896--82110136 Score: 267
Period size: 119 Copynumber: 2.0 Consensus size: 119
82109886 ATGTCTGGGC
* *
82109896 TAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTCGTGCAAG
1 TAAGTCCCAAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTCGTGCAAG
* * * **
82109961 TTACTAATTCTGGGCTAAGGCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGT
66 TTACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAATCCGGGT
* * ** * *
82110015 TAAGTCCCAAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTTGTGCG
1 TAAGTCCCAAAGGC-TTTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCATTCGTGCA
* *
82110078 AGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGT
64 AGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-CTAAATCCGGGT
82110134 TAA
1 TAA
82110137 ACTCCGAAGG
Statistics
Matches: 102, Mismatches: 15, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
118 3 0.03
119 68 0.67
120 31 0.30
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (119 bp):
TAAGTCCCAAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTCGTGCAAG
TTACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAATCCGGGT
Found at i:82114908 original size:40 final size:40
Alignment explanation
Indices: 82114849--82114990 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
82114839 AAATTGAATG
* * *
82114849 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
82114889 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGCGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
82114929 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
82114969 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
82114991 GCATTTGTGC
Statistics
Matches: 85, Mismatches: 16, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 3 0.04
40 82 0.96
ACGTcount: A:0.27, C:0.25, G:0.27, T:0.21
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:82115014 original size:40 final size:39
Alignment explanation
Indices: 82114887--82115016 Score: 147
Period size: 40 Copynumber: 3.3 Consensus size: 39
82114877 ATGCTGGAAA
* * *
82114887 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGCGGC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-A-CAGC
* *
82114928 -TATATCCGGGCTAAGACCCGAAGGCATTCGTGC-GAGTC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACAG-C
*
82114966 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGC
1 -TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACA-GC
82115007 TTATATCCGG
1 TTATATCCGG
82115017 TTATATTCCG
Statistics
Matches: 75, Mismatches: 9, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
37 1 0.01
38 1 0.01
40 70 0.93
41 2 0.03
42 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACAGC
Found at i:82117896 original size:21 final size:23
Alignment explanation
Indices: 82117881--82117926 Score: 74
Period size: 25 Copynumber: 1.9 Consensus size: 23
82117871 ATTGAATTGT
82117881 TTCATATTCTTTTTGAATAGGTAAA
1 TTCATATTCTTTTTGAATAGGT--A
82117906 TTCATATTCTTTTTGAATAGG
1 TTCATATTCTTTTTGAATAGG
82117927 CAAACTCCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.28, C:0.09, G:0.13, T:0.50
Consensus pattern (23 bp):
TTCATATTCTTTTTGAATAGGTA
Found at i:82117941 original size:24 final size:25
Alignment explanation
Indices: 82117882--82117942 Score: 70
Period size: 25 Copynumber: 2.5 Consensus size: 25
82117872 TTGAATTGTT
* * *
82117882 TCATATTCTTTTTGAATAGGTAAAT
1 TCATATCCTTTTTGAATAGGCAAAC
*
82117907 TCATATTCTTTTTGAATAGGCAAAC
1 TCATATCCTTTTTGAATAGGCAAAC
*
82117932 TCCT-TCCTTTT
1 TCATATCCTTTT
82117943 GTTTTTATAA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
24 6 0.19
25 26 0.81
ACGTcount: A:0.26, C:0.16, G:0.10, T:0.48
Consensus pattern (25 bp):
TCATATCCTTTTTGAATAGGCAAAC
Found at i:82118538 original size:15 final size:15
Alignment explanation
Indices: 82118512--82118547 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
82118502 AAAGGAAAAT
*
82118512 AATTTAAAAACTTAA
1 AATTTGAAAACTTAA
*
82118527 ATTTTGAAAACTTAA
1 AATTTGAAAACTTAA
82118542 AATTTG
1 AATTTG
82118548 GAGAAACGAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.50, C:0.06, G:0.06, T:0.39
Consensus pattern (15 bp):
AATTTGAAAACTTAA
Found at i:82118908 original size:23 final size:23
Alignment explanation
Indices: 82118781--82118900 Score: 138
Period size: 23 Copynumber: 5.3 Consensus size: 23
82118771 AACTATAGAA
* *
82118781 AATATTCACTATTCATGCTAGAG
1 AATATTTACTATTCATGCCAGAG
*
82118804 AATATTTACTGTTCATGCCAGAG
1 AATATTTACTATTCATGCCAGAG
* * *
82118827 AAT-CTTAATGATT-TTGCCAGAG
1 AATATTTACT-ATTCATGCCAGAG
*
82118849 -ATTTTTACTATTCATGCCAGAG
1 AATATTTACTATTCATGCCAGAG
*
82118871 AATATTTACTATTCATGCTAGAG
1 AATATTTACTATTCATGCCAGAG
82118894 AATATTT
1 AATATTT
82118901 GTTGTTCACT
Statistics
Matches: 81, Mismatches: 12, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
21 5 0.06
22 24 0.30
23 52 0.64
ACGTcount: A:0.33, C:0.15, G:0.14, T:0.38
Consensus pattern (23 bp):
AATATTTACTATTCATGCCAGAG
Found at i:82125765 original size:42 final size:42
Alignment explanation
Indices: 82125573--82125773 Score: 143
Period size: 42 Copynumber: 4.6 Consensus size: 42
82125563 AGATGCCAAT
* * * *
82125573 GCCATATCCTAGATATGGTCTTACATGGGATCACATATCGAT
1 GCCATATCCCAGATATGGTCTTACACGGGATCACATATTGAG
* * * * * ** *
82125615 GCCAATAGCCAAGCTATGATCTTACACGATG-TCTGATATTGAT
1 GCC-ATATCCCAGATATGGTCTTACACG-GGATCACATATTGAG
* * * **
82125658 GCCATGTCCCAGACATGGTATTACACGAAATCACATATTGATG
1 GCCATATCCCAGATATGGTCTTACACGGGATCACATATTGA-G
* *
82125701 CCAATGCCATATCCCAGATATGGTCTTACATGGGATCAAATATTGAG
1 -----GCCATATCCCAGATATGGTCTTACACGGGATCACATATTGAG
*
82125748 GCCATATCCTAGATATGGTCTTACAC
1 GCCATATCCCAGATATGGTCTTACAC
82125774 AAAACCGCAC
Statistics
Matches: 120, Mismatches: 30, Indels: 18
0.71 0.18 0.11
Matches are distributed among these distances:
42 53 0.44
43 31 0.26
44 1 0.01
47 1 0.01
48 34 0.28
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.29
Consensus pattern (42 bp):
GCCATATCCCAGATATGGTCTTACACGGGATCACATATTGAG
Found at i:82129162 original size:16 final size:17
Alignment explanation
Indices: 82129143--82129175 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
82129133 TGTCGATTCA
82129143 TGACATTG-TCTTCTCT
1 TGACATTGTTCTTCTCT
82129159 TGACATTGTTCTTCTCT
1 TGACATTGTTCTTCTCT
82129176 GCACTAGCCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.12, C:0.24, G:0.12, T:0.52
Consensus pattern (17 bp):
TGACATTGTTCTTCTCT
Done.