Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 260 of 318
Found at i:82142701 original size:61 final size:58
Alignment explanation
Indices: 82142636--82142751 Score: 151
Period size: 61 Copynumber: 1.9 Consensus size: 58
82142626 AGTGATTATC
** * * *
82142636 TTAATATTAAATTTAATTTGATATTTATTTTGTAGATAAGTATTCTATTAATTAAATAGAT
1 TTAATATTAAATTTAACCTAATATTTA-TCT-T-GATAAGTATTATATTAATTAAATAGAT
*
82142697 TTAATATTAAATTTAACCTAATATTTATCTTGATAAGTATTATATTAATTTAATA
1 TTAATATTAAATTTAACCTAATATTTATCTTGATAAGTATTATATTAATTAAATA
82142752 TTAAGTGGTT
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
58 22 0.45
59 1 0.02
60 2 0.04
61 24 0.49
ACGTcount: A:0.41, C:0.03, G:0.06, T:0.50
Consensus pattern (58 bp):
TTAATATTAAATTTAACCTAATATTTATCTTGATAAGTATTATATTAATTAAATAGAT
Found at i:82148167 original size:48 final size:48
Alignment explanation
Indices: 82148097--82148315 Score: 298
Period size: 48 Copynumber: 4.6 Consensus size: 48
82148087 TGAGATCACA
* * * *
82148097 TGTAAGACCACGTCTGGGACATGGCATCGGCGTTGATATGTGTGCTAA
1 TGTAAGACCATGTCTGGGACATGGCATCAGCGTTGATATGTGTGCCAG
* *
82148145 TGTAAGACCATGTGTGGGACATGGCAT-ATGCTTTGATA-GTGTGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCA-GCGTTGATATGTGTGCCAG
*
82148192 TGTAAGACCATGTCTGGGACATGGCATCAGCATTGATATGTGTGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCAGCGTTGATATGTGTGCCAG
* * * *
82148240 TGTAAGACCATGTTTGGGACATGGCATCAACGATGATATGTGTGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCAGCGTTGATATGTGTGCCAG
* *
82148288 TGTAAGACCATGTCTAGAACATGGCATC
1 TGTAAGACCATGTCTGGGACATGGCATC
82148316 GACACCGATA
Statistics
Matches: 152, Mismatches: 16, Indels: 6
0.87 0.09 0.03
Matches are distributed among these distances:
47 41 0.27
48 111 0.73
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCAGCGTTGATATGTGTGCCAG
Found at i:82148260 original size:95 final size:96
Alignment explanation
Indices: 82148097--82148315 Score: 307
Period size: 95 Copynumber: 2.3 Consensus size: 96
82148087 TGAGATCACA
* * * *
82148097 TGTAAGACCACGTCTGGGACATGGCATCGGCGTTGATATGTGTGCTAATGTAAGACCATGTGTGG
1 TGTAAGACCATGTCTGGGACATGGCATCAGCATTGATATGTGTGCCAATGTAAGACCATGTGTGG
* **
82148162 GACATGGCAT-ATGCTTTGATA-GTGTGCCAG
66 GACATGGCATCA-ACGATGATATGTGTGCCAG
* *
82148192 TGTAAGACCATGTCTGGGACATGGCATCAGCATTGATATGTGTGCCAGTGTAAGACCATGTTTGG
1 TGTAAGACCATGTCTGGGACATGGCATCAGCATTGATATGTGTGCCAATGTAAGACCATGTGTGG
*
82148257 GACATGGCATCAACGATGATATGTGTGCTAG
66 GACATGGCATCAACGATGATATGTGTGCCAG
* *
82148288 TGTAAGACCATGTCTAGAACATGGCATC
1 TGTAAGACCATGTCTGGGACATGGCATC
82148316 GACACCGATA
Statistics
Matches: 110, Mismatches: 12, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
95 75 0.68
96 35 0.32
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (96 bp):
TGTAAGACCATGTCTGGGACATGGCATCAGCATTGATATGTGTGCCAATGTAAGACCATGTGTGG
GACATGGCATCAACGATGATATGTGTGCCAG
Found at i:82148342 original size:96 final size:95
Alignment explanation
Indices: 82148147--82148359 Score: 234
Period size: 96 Copynumber: 2.2 Consensus size: 95
82148137 TGTGCTAATG
* * ** * *
82148147 TAAGACCATGTGTGGGACATGGCATATGCTTTGATAGTGTGCCAGTGTAAGACCATGTCTGGGAC
1 TAAGACCATGTTTGGGACATGGCATATACGATGATAGTGTGCCAGTGTAAGACCATGTCTAGAAC
** * * *
82148212 ATGGCATCAGCATTGATATGTGTGCCAGTG
66 ATGGCATCAGCACCGATATGAGTACCAGTA
*
82148242 TAAGACCATGTTTGGGACATGGCATCA-ACGATGATATGTGTGCTAGTGTAAGACCATGTCTAGA
1 TAAGACCATGTTTGGGACATGGCAT-ATACGATGATA-GTGTGCCAGTGTAAGACCATGTCTAGA
*
82148306 ACATGGCATC-GACACCGATATGAG-ACCTCGTA
64 ACATGGCATCAG-CACCGATATGAGTACC-AGTA
* *
82148338 TAAGACCATATTTGGGATATGG
1 TAAGACCATGTTTGGGACATGG
82148360 TTTCGACATG
Statistics
Matches: 99, Mismatches: 15, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
95 33 0.33
96 66 0.67
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (95 bp):
TAAGACCATGTTTGGGACATGGCATATACGATGATAGTGTGCCAGTGTAAGACCATGTCTAGAAC
ATGGCATCAGCACCGATATGAGTACCAGTA
Found at i:82151147 original size:24 final size:24
Alignment explanation
Indices: 82151120--82151165 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 24
82151110 GAAGGGTTTT
82151120 TGAAGAGA-GAAAGTGA-GAGAGAAG
1 TGAAGA-ATGAAAG-GATGAGAGAAG
82151144 TGAAGAATGAAAGGATGAGAGA
1 TGAAGAATGAAAGGATGAGAGA
82151166 TGTGTTTCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 3 0.15
24 17 0.85
ACGTcount: A:0.50, C:0.00, G:0.39, T:0.11
Consensus pattern (24 bp):
TGAAGAATGAAAGGATGAGAGAAG
Found at i:82151787 original size:22 final size:22
Alignment explanation
Indices: 82151759--82151805 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
82151749 CCGAAACTGC
82151759 ATGAATTTGAGTTAAAAAGGGT
1 ATGAATTTGAGTTAAAAAGGGT
82151781 ATGAATTTGAGTTAAAAAGGGT
1 ATGAATTTGAGTTAAAAAGGGT
82151803 ATG
1 ATG
82151806 TTAATATTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.40, C:0.00, G:0.28, T:0.32
Consensus pattern (22 bp):
ATGAATTTGAGTTAAAAAGGGT
Found at i:82152826 original size:39 final size:39
Alignment explanation
Indices: 82152783--82152861 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
82152773 TGGTATGATT
82152783 TGCATGTTTATTAAGAGTACATTTATATCATAATTCAAC
1 TGCATGTTTATTAAGAGTACATTTATATCATAATTCAAC
82152822 TGCATGTTTATTAAGAGTACATTTATATCATAATTCAAC
1 TGCATGTTTATTAAGAGTACATTTATATCATAATTCAAC
82152861 T
1 T
82152862 AACATACAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.35, C:0.13, G:0.10, T:0.42
Consensus pattern (39 bp):
TGCATGTTTATTAAGAGTACATTTATATCATAATTCAAC
Found at i:82153320 original size:30 final size:30
Alignment explanation
Indices: 82153286--82153344 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
82153276 TATTTTATTA
82153286 TTAATTTTGTTATTATTTTAAAGGCATTTG
1 TTAATTTTGTTATTATTTTAAAGGCATTTG
* *
82153316 TTAATTTTGTTATTATTTTAGAGGTATTT
1 TTAATTTTGTTATTATTTTAAAGGCATTT
82153345 TCTTGTTAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.25, C:0.02, G:0.14, T:0.59
Consensus pattern (30 bp):
TTAATTTTGTTATTATTTTAAAGGCATTTG
Found at i:82154309 original size:3 final size:3
Alignment explanation
Indices: 82154301--82154348 Score: 96
Period size: 3 Copynumber: 16.0 Consensus size: 3
82154291 TTGTGGGATT
82154301 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
82154349 GGGATCCTTG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:82175328 original size:53 final size:54
Alignment explanation
Indices: 82175147--82175353 Score: 170
Period size: 53 Copynumber: 3.9 Consensus size: 54
82175137 ATTAGGGTTT
* * * * * *
82175147 AAGGATACCAAGTATGACCATGCC-AAGGCATGGCATTGGTAAGTTTTACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAAGACATGGCAATGGTAAG-TTCATAAGGC
* * * * * * * *
82175201 AAGGAAATCATGTAAGACCATG-TAAAGACATGACATTGATAAACTACGATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAAGACATGGCAATGGT-AAGTTC-ATAAGGC
* * *
82175256 AAAGATCCCATGTAAGACCATGCCAAAG-CATGGCAATGGTGAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAAGACATGGCAATGGTAAGTTCATAAGGC
* * * *
82175309 AAGGATACCACGTATGACCATGTC-AAGACATGGAAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAAGACATGGCAATGGTAAGTT
82175354 TAAAAAGGAA
Statistics
Matches: 118, Mismatches: 30, Indels: 11
0.74 0.19 0.07
Matches are distributed among these distances:
52 3 0.03
53 41 0.35
54 35 0.30
55 35 0.30
56 4 0.03
ACGTcount: A:0.38, C:0.17, G:0.24, T:0.21
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAAGACATGGCAATGGTAAGTTCATAAGGC
Found at i:82177182 original size:18 final size:20
Alignment explanation
Indices: 82177144--82177188 Score: 58
Period size: 18 Copynumber: 2.4 Consensus size: 20
82177134 AACAATTAAT
*
82177144 AATTAATATTATGCATATTA
1 AATTATTATTATGCATATTA
82177164 AATTATTATT-TGC-TATTA
1 AATTATTATTATGCATATTA
*
82177182 ATTTATT
1 AATTATT
82177189 GAAATAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 11 0.48
19 3 0.13
20 9 0.39
ACGTcount: A:0.38, C:0.04, G:0.04, T:0.53
Consensus pattern (20 bp):
AATTATTATTATGCATATTA
Found at i:82177184 original size:17 final size:19
Alignment explanation
Indices: 82177143--82177184 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
82177133 TAACAATTAA
82177143 TAATTAATATTATGCATAT
1 TAATTAATATTATGCATAT
*
82177162 TAAATTATTATT-TGC-TAT
1 T-AATTAATATTATGCATAT
82177180 TAATT
1 TAATT
82177185 TATTGAAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 4 0.19
18 4 0.19
19 4 0.19
20 9 0.43
ACGTcount: A:0.38, C:0.05, G:0.05, T:0.52
Consensus pattern (19 bp):
TAATTAATATTATGCATAT
Found at i:82177281 original size:16 final size:15
Alignment explanation
Indices: 82177256--82177289 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
82177246 AAAGTTGATA
*
82177256 ATAATTAATATATATT
1 ATAATAAATATA-ATT
82177272 ATAATAAATATAATT
1 ATAATAAATATAATT
82177287 ATA
1 ATA
82177290 TATCTGTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
ATAATAAATATAATT
Found at i:82177289 original size:22 final size:19
Alignment explanation
Indices: 82177253--82177292 Score: 53
Period size: 22 Copynumber: 1.9 Consensus size: 19
82177243 TGCAAAGTTG
82177253 ATAATAATTAATATATATT
1 ATAATAATTAATATATATT
82177272 ATAATAAATATAATTATATAT
1 ATAAT-AAT-TAA-TATATAT
82177293 CTGTTATCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 5 0.28
20 3 0.17
21 3 0.17
22 7 0.39
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (19 bp):
ATAATAATTAATATATATT
Found at i:82180366 original size:68 final size:64
Alignment explanation
Indices: 82180225--82180375 Score: 162
Period size: 68 Copynumber: 2.3 Consensus size: 64
82180215 TGGAACCGCG
* * * * *
82180225 CATGCAACCTAGCTACATATATGCCGTAGCTCTCTTGTCTACATGGTGTACACATAGTATCACC
1 CATGCGACCTAGCTACATATATGCCGTAGCTCTCTTGTCTACATGATGTACACATAGCACCACA
*
82180289 CATGCGACCTAGCTACATCATAATGTCTCGTAGCTCTCTTGTAC-ACATGATGTGCAC-TCAGCA
1 CATGCGACCTAGCTACAT-AT-ATG-C-CGTAGCTCTCTTGT-CTACATGATGTACACAT-AGCA
*
82180352 CCATA
60 CCACA
*
82180357 CATGTGACCTAGCTACATA
1 CATGCGACCTAGCTACATA
82180376 CCATCTGTAT
Statistics
Matches: 73, Mismatches: 8, Indels: 9
0.81 0.09 0.10
Matches are distributed among these distances:
64 17 0.23
65 2 0.03
66 3 0.04
67 3 0.04
68 47 0.64
69 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.28
Consensus pattern (64 bp):
CATGCGACCTAGCTACATATATGCCGTAGCTCTCTTGTCTACATGATGTACACATAGCACCACA
Found at i:82200079 original size:28 final size:28
Alignment explanation
Indices: 82200046--82200117 Score: 83
Period size: 28 Copynumber: 2.6 Consensus size: 28
82200036 CTATATATGT
82200046 ATATGGCACTTAGTGTGCAAAATATT-A
1 ATATGGCACTTAGTGTGCAAAATATTGA
* ***
82200073 ATAATGGCACTTGGTGTGCGGGATATTGA
1 AT-ATGGCACTTAGTGTGCAAAATATTGA
*
82200102 GTATGGCACTTAGTGT
1 ATATGGCACTTAGTGT
82200118 ACGAGACATT
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
27 2 0.05
28 33 0.89
29 2 0.05
ACGTcount: A:0.28, C:0.11, G:0.28, T:0.33
Consensus pattern (28 bp):
ATATGGCACTTAGTGTGCAAAATATTGA
Found at i:82200128 original size:28 final size:28
Alignment explanation
Indices: 82200076--82200129 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
82200066 AATATTAATA
* * * *
82200076 ATGGCACTTGGTGTGCGGGATATTGAGT
1 ATGGCACTTAGTGTACGAGACATTGAGT
82200104 ATGGCACTTAGTGTACGAGACATTGA
1 ATGGCACTTAGTGTACGAGACATTGA
82200130 AGATGCAACG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.24, C:0.13, G:0.33, T:0.30
Consensus pattern (28 bp):
ATGGCACTTAGTGTACGAGACATTGAGT
Found at i:82201119 original size:46 final size:46
Alignment explanation
Indices: 82201069--82201244 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
82201059 TGGTTGAGCA
82201069 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
82201115 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
82201160 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
82201208 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
82201245 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 64 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:82201225 original size:93 final size:93
Alignment explanation
Indices: 82201066--82201236 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
82201056 GGATGGTTGA
* *
82201066 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
82201131 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
82201159 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
82201224 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
82201237 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:82204212 original size:15 final size:15
Alignment explanation
Indices: 82204192--82204260 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
82204182 GTATCTTGGG
82204192 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
82204207 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
82204222 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
82204237 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
82204252 TTTCTTTAT
1 TTTCTTTAT
82204261 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:82204261 original size:30 final size:30
Alignment explanation
Indices: 82204183--82204270 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
82204173 CATAGTATCG
* * * *
82204183 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
82204213 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
82204243 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
82204271 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:82206233 original size:46 final size:46
Alignment explanation
Indices: 82206183--82206358 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
82206173 TGGTTGAGCA
82206183 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
82206229 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
82206274 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
82206322 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
82206359 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 64 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:82206339 original size:93 final size:93
Alignment explanation
Indices: 82206180--82206350 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
82206170 GGATGGTTGA
* *
82206180 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
82206245 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
82206273 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
82206338 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
82206351 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:82209340 original size:15 final size:15
Alignment explanation
Indices: 82209301--82209378 Score: 74
Period size: 15 Copynumber: 5.4 Consensus size: 15
82209291 GTATCTTGGG
*
82209301 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
82209316 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
82209331 TTTCTTTA-T-TGGG
1 TTTCTTTATTCTGGA
*
82209344 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
82209359 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
82209373 TTTCTT
1 TTTCTT
82209379 GTTATCTTTG
Statistics
Matches: 52, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
13 11 0.21
14 9 0.17
15 30 0.58
16 2 0.04
ACGTcount: A:0.10, C:0.17, G:0.14, T:0.59
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:82209359 original size:43 final size:42
Alignment explanation
Indices: 82209296--82209378 Score: 121
Period size: 43 Copynumber: 2.0 Consensus size: 42
82209286 GTATCGTATC
*
82209296 TTGGGTTTCTTTATCCTGGATCTCTTTATTCTGGATTTCTTTA
1 TTGGGTTTCTCTATCCTGGATCTCTTTATTC-GGATTTCTTTA
* * *
82209339 TTGGGTTTCTCTATCTTGGATTTCTTTATTCGGTTTTCTT
1 TTGGGTTTCTCTATCCTGGATCTCTTTATTCGGATTTCTT
82209379 GTTATCTTTG
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
42 8 0.22
43 28 0.78
ACGTcount: A:0.10, C:0.16, G:0.17, T:0.58
Consensus pattern (42 bp):
TTGGGTTTCTCTATCCTGGATCTCTTTATTCGGATTTCTTTA
Found at i:82209367 original size:28 final size:28
Alignment explanation
Indices: 82209292--82209374 Score: 87
Period size: 28 Copynumber: 2.9 Consensus size: 28
82209282 CATAGTATCG
* * * *
82209292 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTAT--TGGGTTTCTC
82209322 TAT-TCTGGATTTCTTTATTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTGGGTTTCTC
*
82209350 TATCTTGGATTTCTTTATTCGGTTT
1 TATCTTGGATTTCTTTATTGGGTTT
82209375 TCTTGTTATC
Statistics
Matches: 46, Mismatches: 5, Indels: 6
0.81 0.09 0.11
Matches are distributed among these distances:
28 29 0.63
29 2 0.04
30 15 0.33
ACGTcount: A:0.11, C:0.16, G:0.17, T:0.57
Consensus pattern (28 bp):
TATCTTGGATTTCTTTATTGGGTTTCTC
Found at i:82211831 original size:46 final size:46
Alignment explanation
Indices: 82211773--82211944 Score: 154
Period size: 46 Copynumber: 3.7 Consensus size: 46
82211763 TGGGCATCCA
* *
82211773 AACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCG
* * * *
82211819 AACTCGTTGAGTTGAGTCTGAGTT---TGA-GAGATGTAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCAA--ATG--TCCG
* * * *
82211866 AGCTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCG
* * *
82211912 AGCTCGTTAAGTTGAGTCCGAGTTCACATATGG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
82211945 GCAGGTTACA
Statistics
Matches: 101, Mismatches: 16, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
42 1 0.01
43 7 0.07
45 2 0.02
46 55 0.54
47 25 0.25
48 2 0.02
50 8 0.08
51 1 0.01
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.30
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCG
Found at i:82211925 original size:93 final size:93
Alignment explanation
Indices: 82211765--82211935 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
82211755 AGGATATTTG
* * * *
82211765 GGCATCCAAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCAAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTAAG
*
82211830 TTGAGTCTGAGTTTGAGAGATGTAACTA
66 TTGAGTCCGAGTTTGAGAGATGTAACTA
* * *
82211858 GGCATCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAGCTCGTTAAG
1 GGCATCCAAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTAAG
82211923 TTGAGTCCGAGTT
66 TTGAGTCCGAGTT
82211936 CACATATGGG
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.30
Consensus pattern (93 bp):
GGCATCCAAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTAAG
TTGAGTCCGAGTTTGAGAGATGTAACTA
Found at i:82214016 original size:40 final size:40
Alignment explanation
Indices: 82213961--82214177 Score: 334
Period size: 40 Copynumber: 5.5 Consensus size: 40
82213951 CGGATGATAA
* *
82213961 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
82214001 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
82214041 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
82214081 CCGGGCTAGGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
82214121 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
82214161 -C-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
82214178 TACTTGGTTT
Statistics
Matches: 167, Mismatches: 8, Indels: 6
0.92 0.04 0.03
Matches are distributed among these distances:
38 15 0.09
39 3 0.02
40 148 0.89
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:82221091 original size:40 final size:40
Alignment explanation
Indices: 82221036--82221253 Score: 334
Period size: 40 Copynumber: 5.5 Consensus size: 40
82221026 CGGATGATAA
* *
82221036 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
82221076 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
82221116 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
82221156 CCGGGCTAGGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
82221196 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
82221236 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
82221254 TACTTGGTTT
Statistics
Matches: 166, Mismatches: 10, Indels: 5
0.92 0.06 0.03
Matches are distributed among these distances:
39 17 0.10
40 148 0.89
41 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:82229305 original size:40 final size:40
Alignment explanation
Indices: 82229250--82229467 Score: 343
Period size: 40 Copynumber: 5.5 Consensus size: 40
82229240 CGGATGATAA
* *
82229250 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
82229290 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
82229330 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
82229370 CCGGGCTAGGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
82229410 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
82229450 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
82229468 TACTTGGTTT
Statistics
Matches: 168, Mismatches: 8, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
39 17 0.10
40 150 0.89
41 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:82245477 original size:40 final size:40
Alignment explanation
Indices: 82245369--82245478 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
82245359 ATTGAATGAT
* * * * *
82245369 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
* * *
82245409 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
82245449 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
82245479 AAATTGTGAA
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
Found at i:82245493 original size:40 final size:39
Alignment explanation
Indices: 82245369--82245518 Score: 133
Period size: 40 Copynumber: 3.8 Consensus size: 39
82245359 ATTGAATGAT
* * * * * * *
82245369 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGA-CAC
*
82245409 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGAC-AC
* *
82245449 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATTGTGA-A-
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC---TAGTGACAC
* *
82245489 ATCCGGGTTAAGTCCCGAAGGCCTTTGTGC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC
82245519 GGGTTACCAT
Statistics
Matches: 92, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
40 86 0.93
41 1 0.01
43 5 0.05
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGACAC
Found at i:82253478 original size:40 final size:38
Alignment explanation
Indices: 82253421--82253563 Score: 119
Period size: 40 Copynumber: 3.7 Consensus size: 38
82253411 ATTGAATGAT
* *
82253421 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGCTAAGACCCGAAGGCA-TT-TGCTGGTAATTAC
* * * *
82253461 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGCTAAGACCCGAAGGC-ATT-TGCTGGTAATTAC
** **
82253501 ATATGGGCTAAGACCCGAAGGCATTTG-TGCAAATTA-
1 ATCCGGGCTAAGACCCGAAGGCATTTGCTGGTAATTAC
* * *
82253537 ATCCGGGTTAAGTCCCGAAGGCCTTTG
1 ATCCGGGCTAAGACCCGAAGGCATTTG
82253564 TGCGGGTTAC
Statistics
Matches: 82, Mismatches: 20, Indels: 6
0.76 0.19 0.06
Matches are distributed among these distances:
36 22 0.27
37 4 0.05
38 2 0.02
39 3 0.04
40 50 0.61
41 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (38 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGCTGGTAATTAC
Found at i:82256967 original size:59 final size:59
Alignment explanation
Indices: 82256875--82256992 Score: 227
Period size: 59 Copynumber: 2.0 Consensus size: 59
82256865 TCCCCAAGCT
82256875 CGTAACTTACGAGCAAAATCTATAAAACAGAGTAACAAAAACACACACAGAGTAAACTA
1 CGTAACTTACGAGCAAAATCTATAAAACAGAGTAACAAAAACACACACAGAGTAAACTA
*
82256934 CGTAACTTATGAGCAAAATCTATAAAACAGAGTAACAAAAACACACACAGAGTAAACTA
1 CGTAACTTACGAGCAAAATCTATAAAACAGAGTAACAAAAACACACACAGAGTAAACTA
82256993 ACTTAGCTTA
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 58 1.00
ACGTcount: A:0.53, C:0.19, G:0.12, T:0.16
Consensus pattern (59 bp):
CGTAACTTACGAGCAAAATCTATAAAACAGAGTAACAAAAACACACACAGAGTAAACTA
Found at i:82257413 original size:35 final size:35
Alignment explanation
Indices: 82257349--82257452 Score: 120
Period size: 35 Copynumber: 3.0 Consensus size: 35
82257339 TTACATATAT
* * *
82257349 CCGAGTATACAATTTCAATATAAGTTCACATGTAA
1 CCGAATATACAAATTCAATATAAGCTCACATGTAA
* * *
82257384 TCGAATACTA-AAATTCAATATAACCTCACATGTAG
1 CCGAATA-TACAAATTCAATATAAGCTCACATGTAA
* *
82257419 CCGAATATACAAGTTCAATATAAGCTTACATGTA
1 CCGAATATACAAATTCAATATAAGCTCACATGTA
82257453 CTTACCTATA
Statistics
Matches: 57, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
34 2 0.04
35 53 0.93
36 2 0.04
ACGTcount: A:0.41, C:0.18, G:0.11, T:0.30
Consensus pattern (35 bp):
CCGAATATACAAATTCAATATAAGCTCACATGTAA
Found at i:82261491 original size:29 final size:29
Alignment explanation
Indices: 82261454--82261512 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
82261444 TATTGCTTCC
*
82261454 ATACGTCCATTATATCTTCATTTAAAATT
1 ATACATCCATTATATCTTCATTTAAAATT
82261483 ATACATCCATTATATCTTCATTTAAAATT
1 ATACATCCATTATATCTTCATTTAAAATT
82261512 A
1 A
82261513 AATAATATAG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.37, C:0.17, G:0.02, T:0.44
Consensus pattern (29 bp):
ATACATCCATTATATCTTCATTTAAAATT
Found at i:82262114 original size:18 final size:18
Alignment explanation
Indices: 82262091--82262127 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
82262081 TAAAAATATA
82262091 TGCTCTTTAAAGATTATT
1 TGCTCTTTAAAGATTATT
82262109 TGCTCTTTAAAGATTATT
1 TGCTCTTTAAAGATTATT
82262127 T
1 T
82262128 TTTCTCCCGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.27, C:0.11, G:0.11, T:0.51
Consensus pattern (18 bp):
TGCTCTTTAAAGATTATT
Found at i:82265803 original size:24 final size:23
Alignment explanation
Indices: 82265759--82265804 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
82265749 ACTCATATAC
82265759 TACAATTAAATTTTTAGAAAAAT
1 TACAATTAAATTTTTAGAAAAAT
82265782 TACAATTAAATTTTTAGAAAAAT
1 TACAATTAAATTTTTAGAAAAAT
82265805 AGGCAGCACT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.52, C:0.04, G:0.04, T:0.39
Consensus pattern (23 bp):
TACAATTAAATTTTTAGAAAAAT
Found at i:82267609 original size:30 final size:30
Alignment explanation
Indices: 82267573--82267631 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
82267563 TATGTTTTTA
82267573 TTAATTTTGTTATTATTTTAAAGACATTTG
1 TTAATTTTGTTATTATTTTAAAGACATTTG
*
82267603 TTAATTTTGTTATTATTTTAGAGACATTT
1 TTAATTTTGTTATTATTTTAAAGACATTT
82267632 AATTATTAAG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.29, C:0.03, G:0.10, T:0.58
Consensus pattern (30 bp):
TTAATTTTGTTATTATTTTAAAGACATTTG
Found at i:82274095 original size:30 final size:30
Alignment explanation
Indices: 82274061--82274121 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
82274051 GGGATGTTGG
82274061 CATCGATATATGTGGAGACCATGTTTGGGA
1 CATCGATATATGTGGAGACCATGTTTGGGA
82274091 CATCGATATATGTGGAGACCATGTTTGGGA
1 CATCGATATATGTGGAGACCATGTTTGGGA
82274121 C
1 C
82274122 TTTGGCATTG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.26, C:0.15, G:0.30, T:0.30
Consensus pattern (30 bp):
CATCGATATATGTGGAGACCATGTTTGGGA
Found at i:82277015 original size:10 final size:9
Alignment explanation
Indices: 82276986--82277020 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
82276976 TTACACAAGC
*
82276986 GGGCCCATG
1 GGGCCCATT
82276995 GGGCCCATT
1 GGGCCCATT
82277004 GGGCCCATT
1 GGGCCCATT
*
82277013 TGGCCCAT
1 GGGCCCAT
82277021 CGAGGCCCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.11, C:0.34, G:0.34, T:0.20
Consensus pattern (9 bp):
GGGCCCATT
Found at i:82283698 original size:92 final size:92
Alignment explanation
Indices: 82283587--82283755 Score: 286
Period size: 92 Copynumber: 1.8 Consensus size: 92
82283577 GCCCATAAGT
** *
82283587 GAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATAAGTGAACTCGGACTC-ACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGG-CTCAACTCAA
82283651 CGAGTTCGGATGCCTAGTTACATCTCAC
65 CGAGTTCGGATGCCTAGTTACATCTCAC
*
82283679 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGCTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGCTCAACTCAAC
82283744 GAGTTCGGATGC
66 GAGTTCGGATGC
82283756 TCAACCATCC
Statistics
Matches: 72, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
91 3 0.04
92 69 0.96
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGCTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCAC
Found at i:82283748 original size:45 final size:46
Alignment explanation
Indices: 82283579--82283757 Score: 224
Period size: 46 Copynumber: 3.9 Consensus size: 46
82283569 ATGTAACCGC
* * *
82283579 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCGCAT
*
82283625 CCATAAGTGAACTCGGACTC-ACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG-CTCG---CAT
* * *
82283674 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCGCAT
82283717 CCATAAGTGAACTCGG-CTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
82283758 AACCATCCTA
Statistics
Matches: 114, Mismatches: 11, Indels: 17
0.80 0.08 0.12
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 42 0.37
46 45 0.39
47 19 0.17
48 1 0.01
49 3 0.03
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCGCAT
Found at i:82291558 original size:40 final size:40
Alignment explanation
Indices: 82291513--82291758 Score: 235
Period size: 40 Copynumber: 6.2 Consensus size: 40
82291503 CGGAATATAA
* *
82291513 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-AGCACAATTGCCTTCGGGTCTTAGC
* *
82291553 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAGC
*** * * * *
82291593 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAGC
** ** *
82291633 CCGGATGGAATGACTCGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCAC-AATTGCCTTCGGGTCTTAGC
* *
82291673 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAGC
*** * * * *
82291713 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAGC
82291753 CCGGAT
1 CCGGAT
82291759 GTCATTCAAT
Statistics
Matches: 165, Mismatches: 38, Indels: 6
0.79 0.18 0.03
Matches are distributed among these distances:
39 2 0.01
40 160 0.97
41 3 0.02
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAGC
Found at i:82291678 original size:120 final size:120
Alignment explanation
Indices: 82291529--82291759 Score: 453
Period size: 120 Copynumber: 1.9 Consensus size: 120
82291519 ATAACCATGT
82291529 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAACC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAACC
82291594 CGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGCCCGGATGGAATGACTC
66 CGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGCCCGGATGGAATGACTC
*
82291649 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAACC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAACC
82291714 CGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGCCCGGATG
66 CGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGCCCGGATG
82291760 TCATTCAATT
Statistics
Matches: 110, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
120 110 1.00
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.27
Consensus pattern (120 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAACC
CGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGCCCGGATGGAATGACTC
Found at i:82294770 original size:120 final size:120
Alignment explanation
Indices: 82294557--82294783 Score: 364
Period size: 120 Copynumber: 1.9 Consensus size: 120
82294547 TATAGAAGTT
*
82294557 TATTTCAACTAGAAAAACGAAATCCTATTTCAACTAGGTTGTAGGGGGTAACAACCCAAGTTAAT
1 TATTTCAACTAGAAAAACGAAATCCTAGTTCAACTAGGTTGTAGGGGGTAACAACCCAAGTTAAT
*
82294622 TATACTAGGGCTTGCTGTCTCCCTTATTAAATAAGGGGCTATTGGACCTCCTCCA
66 TATACTAGGGCTTGCTGTCCCCCTTATTAAATAAGGGGCTATTGGACCTCCTCCA
* * * *
82294677 TATTTCAACTAGAAAAATGGAATCCTAGTTCAACTAGGTTGTAGGGGGTGACAACCCTAGTTAAT
1 TATTTCAACTAGAAAAACGAAATCCTAGTTCAACTAGGTTGTAGGGGGTAACAACCCAAGTTAAT
* * **
82294742 TTTACTAGGGTTTTTTGTCCCCCTTATTAAATAAGGGGCTAT
66 TATACTAGGGCTTGCTGTCCCCCTTATTAAATAAGGGGCTAT
82294784 CAGACCTCTT
Statistics
Matches: 97, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
120 97 1.00
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32
Consensus pattern (120 bp):
TATTTCAACTAGAAAAACGAAATCCTAGTTCAACTAGGTTGTAGGGGGTAACAACCCAAGTTAAT
TATACTAGGGCTTGCTGTCCCCCTTATTAAATAAGGGGCTATTGGACCTCCTCCA
Found at i:82295130 original size:6 final size:6
Alignment explanation
Indices: 82295119--82295146 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
82295109 TTGGACAAAT
82295119 TTTTCA TTTTCA TTTTCA TTTTCA TTTT
1 TTTTCA TTTTCA TTTTCA TTTTCA TTTT
82295147 GGAGAAAACC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.14, C:0.14, G:0.00, T:0.71
Consensus pattern (6 bp):
TTTTCA
Found at i:82305981 original size:40 final size:41
Alignment explanation
Indices: 82305847--82305994 Score: 172
Period size: 41 Copynumber: 3.6 Consensus size: 41
82305837 AATTATTCTA
* *
82305847 TGAATTGCACATACATGCCCCTGTTCGTACTTCGGTACCCC
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
* * * * * *
82305888 TAAATTGTAGATACTTGCCCCTGTTTGTAATTCGATACCCC
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
* * * *
82305929 TGAATTTCACATATGTGCCCCTGTTTGGACTTCGGTA-CCT
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
*
82305969 TGAATTGCACATACGCGCCCCTGTTT
1 TGAATTGCACATACGTGCCCCTGTTT
82305995 ACACTCCAGT
Statistics
Matches: 87, Mismatches: 20, Indels: 1
0.81 0.19 0.01
Matches are distributed among these distances:
40 25 0.29
41 62 0.71
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (41 bp):
TGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
Found at i:82315491 original size:13 final size:13
Alignment explanation
Indices: 82315473--82315500 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
82315463 TGAATTTTAG
82315473 TTGTAAGTGAGGA
1 TTGTAAGTGAGGA
82315486 TTGTAAGTGAGGA
1 TTGTAAGTGAGGA
82315499 TT
1 TT
82315501 TTGCTTGAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.36, T:0.36
Consensus pattern (13 bp):
TTGTAAGTGAGGA
Found at i:82316883 original size:46 final size:46
Alignment explanation
Indices: 82316833--82316961 Score: 204
Period size: 46 Copynumber: 2.8 Consensus size: 46
82316823 TGGTTAAGCA
82316833 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * *
82316879 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTCATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * *
82316925 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
82316962 GCGGGTTACA
Statistics
Matches: 75, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 75 1.00
ACGTcount: A:0.20, C:0.21, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:82320245 original size:30 final size:30
Alignment explanation
Indices: 82320209--82320269 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
82320199 TGGTTGAACT
82320209 TAAAAATTCCTTCATTAAATAAGGAAACAA
1 TAAAAATTCCTTCATTAAATAAGGAAACAA
82320239 TAAAAATTCCTTCATTAAATAAGGAAACAA
1 TAAAAATTCCTTCATTAAATAAGGAAACAA
82320269 T
1 T
82320270 CTAATTGAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.52, C:0.13, G:0.07, T:0.28
Consensus pattern (30 bp):
TAAAAATTCCTTCATTAAATAAGGAAACAA
Found at i:82332597 original size:24 final size:24
Alignment explanation
Indices: 82332552--82332597 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
82332542 CCGATATATC
* **
82332552 AGCTCGTAAGATCTTATTGTTTTT
1 AGCTCGTAAGAGCTTACCGTTTTT
*
82332576 AGCTCGTCAGAGCTTACCGTTT
1 AGCTCGTAAGAGCTTACCGTTT
82332598 CAGCTCAATA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 18 1.00
ACGTcount: A:0.20, C:0.20, G:0.20, T:0.41
Consensus pattern (24 bp):
AGCTCGTAAGAGCTTACCGTTTTT
Found at i:82332812 original size:20 final size:20
Alignment explanation
Indices: 82332787--82332872 Score: 86
Period size: 20 Copynumber: 4.4 Consensus size: 20
82332777 AAAAGCTATG
82332787 TGTTTATACGGATGAATTAT
1 TGTTTATACGGATGAATTAT
* * *
82332807 TGTTTATATGGATGAAGTAC
1 TGTTTATACGGATGAATTAT
* * *
82332827 TGTTTAAACAGATGAGTTAT
1 TGTTTATACGGATGAATTAT
* *
82332847 AG-TTAT-CGAATGAATTAT
1 TGTTTATACGGATGAATTAT
82332865 TGTTTATA
1 TGTTTATA
82332873 TGATTGAGAG
Statistics
Matches: 49, Mismatches: 15, Indels: 4
0.72 0.22 0.06
Matches are distributed among these distances:
18 10 0.20
19 7 0.14
20 32 0.65
ACGTcount: A:0.33, C:0.05, G:0.20, T:0.43
Consensus pattern (20 bp):
TGTTTATACGGATGAATTAT
Found at i:82342152 original size:13 final size:13
Alignment explanation
Indices: 82342134--82342158 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
82342124 TATCTAGGGT
82342134 AAATTATTTACAC
1 AAATTATTTACAC
82342147 AAATTATTTACA
1 AAATTATTTACA
82342159 GATAAGTTTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.40
Consensus pattern (13 bp):
AAATTATTTACAC
Found at i:82360689 original size:63 final size:62
Alignment explanation
Indices: 82360622--82360761 Score: 164
Period size: 59 Copynumber: 2.3 Consensus size: 62
82360612 AAAGATAATC
* * *
82360622 ATATATATTTATATAAATTTCCAAAAT-TAACATGCATTAAACCAATCAAAGCATGTATATAT
1 ATATATATTTATATAAA-TACCAAAATACAACATGCATTAAACCAATCAAAGCATGCATATAT
* * * *
82360684 -TATATA-TT-TATACATACGAAACTACAACATGCATTAAACCAATCAAAGCATGCATGTAT
1 ATATATATTTATATAAATACCAAAATACAACATGCATTAAACCAATCAAAGCATGCATATAT
82360743 -TATATATTTATATATAATA
1 ATATATATTTATATA-AATA
82360762 AAATATCTAT
Statistics
Matches: 66, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
58 6 0.09
59 43 0.65
60 4 0.06
61 10 0.15
62 3 0.05
ACGTcount: A:0.46, C:0.14, G:0.06, T:0.35
Consensus pattern (62 bp):
ATATATATTTATATAAATACCAAAATACAACATGCATTAAACCAATCAAAGCATGCATATAT
Found at i:82364639 original size:40 final size:40
Alignment explanation
Indices: 82364557--82364773 Score: 307
Period size: 40 Copynumber: 5.5 Consensus size: 40
82364547 CGTATGATAA
* *
82364557 CCGGGCTAAGTCCCG-AGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
82364596 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
82364636 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
82364676 CCGGGCTAGGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
82364716 CCGCGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
82364756 -CTGGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
82364774 TACTTGTTTG
Statistics
Matches: 162, Mismatches: 13, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
39 32 0.20
40 129 0.80
41 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:82372840 original size:40 final size:40
Alignment explanation
Indices: 82372785--82373002 Score: 343
Period size: 40 Copynumber: 5.5 Consensus size: 40
82372775 CGGATGATAA
* *
82372785 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
82372825 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
82372865 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
82372905 CCGGGCTAGGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
82372945 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
82372985 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
82373003 TACTTGGTTT
Statistics
Matches: 168, Mismatches: 8, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
39 17 0.10
40 150 0.89
41 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:82381661 original size:30 final size:30
Alignment explanation
Indices: 82381625--82381784 Score: 213
Period size: 29 Copynumber: 5.5 Consensus size: 30
82381615 GACAAGATTG
* * * * *
82381625 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
* *
82381655 GCACTAAGTGTGCGAGTTTG---ATTATACA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
82381683 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
82381712 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
82381742 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
82381771 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
82381785 GATTCACTAT
Statistics
Matches: 120, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 23 0.19
29 48 0.40
30 45 0.38
31 2 0.02
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.27
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:82381753 original size:59 final size:57
Alignment explanation
Indices: 82381625--82381784 Score: 214
Period size: 59 Copynumber: 2.8 Consensus size: 57
82381615 GACAAGATTG
* * * * * *
82381625 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATACA
1 GCACTAAGTGTGCGAGCTGAAAA-TATATAGCACTAAGTGTGCGAGTCTGATTATACA
*
82381683 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAG-CTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTG---ATTATACA
82381742 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
82381785 GATTCACTAT
Statistics
Matches: 92, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 20 0.22
59 50 0.54
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.27
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTGATTATACA
Found at i:82394300 original size:17 final size:17
Alignment explanation
Indices: 82394278--82394312 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
82394268 CATTTTGGGC
*
82394278 CGTGTGGGCCACACGGG
1 CGTGTGGCCCACACGGG
*
82394295 CGTGTGGCCCACATGGG
1 CGTGTGGCCCACACGGG
82394312 C
1 C
82394313 ATGCAACATG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.11, C:0.31, G:0.43, T:0.14
Consensus pattern (17 bp):
CGTGTGGCCCACACGGG
Found at i:82397373 original size:24 final size:24
Alignment explanation
Indices: 82397319--82397375 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
82397309 CTTATGTGAG
82397319 TAAGTATGCGAAACTTTAGGTAAA
1 TAAGTATGCGAAACTTTAGGTAAA
* * *
82397343 TATGTATGCGAACAC-TTATGTACA
1 TAAGTATGCGAA-ACTTTAGGTAAA
82397367 TAAGTATGC
1 TAAGTATGC
82397376 AGACTCATTT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
24 26 0.93
25 2 0.07
ACGTcount: A:0.37, C:0.12, G:0.19, T:0.32
Consensus pattern (24 bp):
TAAGTATGCGAAACTTTAGGTAAA
Found at i:82397533 original size:13 final size:13
Alignment explanation
Indices: 82397511--82397559 Score: 53
Period size: 13 Copynumber: 3.8 Consensus size: 13
82397501 ATGTGATTCA
*
82397511 ATATGAGAACCTT
1 ATATGTGAACCTT
82397524 ATATGTGAACCTT
1 ATATGTGAACCTT
* ** *
82397537 ATGTGCAAACCCT
1 ATATGTGAACCTT
82397550 ATATGTGAAC
1 ATATGTGAAC
82397560 ATATTATGTA
Statistics
Matches: 28, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
13 28 1.00
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31
Consensus pattern (13 bp):
ATATGTGAACCTT
Found at i:82403820 original size:27 final size:27
Alignment explanation
Indices: 82403716--82403821 Score: 140
Period size: 27 Copynumber: 3.9 Consensus size: 27
82403706 TATATATACT
* * * * *
82403716 CCACATAGGGGTAAAGCAGTCATCTTA
1 CCACATAAGGGCAAAACAATCATTTTA
*
82403743 TCACATAAGGGCAAAACAATCATTTTA
1 CCACATAAGGGCAAAACAATCATTTTA
*
82403770 CCACATAAGGGCAAAATAATCATTTTA
1 CCACATAAGGGCAAAACAATCATTTTA
*
82403797 CCACATAAGGGAAAAACAATCATTT
1 CCACATAAGGGCAAAACAATCATTT
82403822 GTCAATTTTA
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 69 1.00
ACGTcount: A:0.42, C:0.20, G:0.14, T:0.24
Consensus pattern (27 bp):
CCACATAAGGGCAAAACAATCATTTTA
Found at i:82408712 original size:32 final size:32
Alignment explanation
Indices: 82408672--82408741 Score: 140
Period size: 32 Copynumber: 2.2 Consensus size: 32
82408662 TACCATCTAA
82408672 AAAAAAATAAACTTGCTAGAACATATTTTCAT
1 AAAAAAATAAACTTGCTAGAACATATTTTCAT
82408704 AAAAAAATAAACTTGCTAGAACATATTTTCAT
1 AAAAAAATAAACTTGCTAGAACATATTTTCAT
82408736 AAAAAA
1 AAAAAA
82408742 GCAAAATTCT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 38 1.00
ACGTcount: A:0.54, C:0.11, G:0.06, T:0.29
Consensus pattern (32 bp):
AAAAAAATAAACTTGCTAGAACATATTTTCAT
Found at i:82409849 original size:27 final size:27
Alignment explanation
Indices: 82409801--82409959 Score: 173
Period size: 27 Copynumber: 5.9 Consensus size: 27
82409791 GCGAGGCTGC
* * *
82409801 CAGATATTGTGACAAAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGATA
82409828 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
*
82409854 TAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* * * *
82409881 CAGATAATTGTGGGATAGCCATCAG-GA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
82409908 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
82409935 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
82409960 GACGCTTCCT
Statistics
Matches: 111, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
26 9 0.08
27 98 0.88
28 4 0.04
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.20
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:82409961 original size:54 final size:54
Alignment explanation
Indices: 82409801--82409962 Score: 229
Period size: 54 Copynumber: 3.0 Consensus size: 54
82409791 GCGAGGCTGC
* * * * *
82409801 CAGATAT-TGTGACAAAGTCACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAA
1 CAGATATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCACCAGGA
* * *
82409854 TAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGGATAGCCATCAGGA
1 CAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGA
82409908 CAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGA
1 CAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGA
82409962 C
1 C
82409963 GCTTCCTCCA
Statistics
Matches: 96, Mismatches: 11, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
53 11 0.11
54 85 0.89
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.20
Consensus pattern (54 bp):
CAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGA
Found at i:82411589 original size:26 final size:26
Alignment explanation
Indices: 82411558--82411665 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
82411548 TGAAATGCCC
*
82411558 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
*
82411584 ATCATGGCACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
82411610 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
82411636 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
82411662 ATCA
1 ATCA
82411666 ATTTGTACCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.35, C:0.25, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:82413650 original size:5 final size:5
Alignment explanation
Indices: 82413642--82413669 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
82413632 GTGAGATGAG
82413642 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
82413670 GAACACACAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:82415522 original size:3 final size:3
Alignment explanation
Indices: 82415514--82415543 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
82415504 AGGCTGAGAA
82415514 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
82415544 GGTTCCATAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:82416729 original size:48 final size:48
Alignment explanation
Indices: 82416667--82416835 Score: 182
Period size: 48 Copynumber: 3.6 Consensus size: 48
82416657 TGATATGTGT
82416667 GCTAGTGTAAGACATGTCTGGGACATGCGTCAGCCTTGAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCGTCAGCCTTGAGATATACAA
* * * * * * *** *
82416715 GCCAGTGTAAGACATGTCTGCGAAATGCATCAACATTGAG-GCGA-GA
1 GCTAGTGTAAGACATGTCTGGGACATGCGTCAGCCTTGAGATATACAA
* *
82416761 GCTAGTGTAAGACATATCTGGGACATGTGTC-GTCCTTGAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCGTCAG-CCTTGAGATATACAA
* *
82416809 GCTAGTGTACGACATGTTTGGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
82416836 GCATCAGCTT
Statistics
Matches: 93, Mismatches: 25, Indels: 6
0.75 0.20 0.05
Matches are distributed among these distances:
46 32 0.34
47 2 0.02
48 59 0.63
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (48 bp):
GCTAGTGTAAGACATGTCTGGGACATGCGTCAGCCTTGAGATATACAA
Found at i:82416926 original size:49 final size:49
Alignment explanation
Indices: 82416855--82417036 Score: 163
Period size: 49 Copynumber: 3.7 Consensus size: 49
82416845 TGTTGTGTGT
* *
82416855 CAGTGTAAGACTTGTCTAGGACATGGCATCGACATCGATATATAAGAGC
1 CAGTGTAAGACCTGTCTAGGACATGGCATCGACATCGATATATAAAAGC
* * * * * * *
82416904 CAGTGCAAGACCTATCTGGGACATGGCATTGGCCTCGATATATAAAAGT
1 CAGTGTAAGACCTGTCTAGGACATGGCATCGACATCGATATATAAAAGC
* * * * * *
82416953 CAGTGTAGGACCTGTCTAGTACATGGCATCGACTTTGATGTGCT---AGC
1 CAGTGTAAGACCTGTCTAGGACATGGCATCGACATCGATAT-ATAAAAGC
* * *
82417000 CAGTGTAAGACCATGTCTCGGACATGGCGTCGGCATC
1 CAGTGTAAGACC-TGTCTAGGACATGGCATCGACATC
82417037 TTATCCCATG
Statistics
Matches: 103, Mismatches: 28, Indels: 5
0.76 0.21 0.04
Matches are distributed among these distances:
47 13 0.13
48 18 0.17
49 71 0.69
50 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.25
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTAGGACATGGCATCGACATCGATATATAAAAGC
Found at i:82423187 original size:48 final size:47
Alignment explanation
Indices: 82423071--82423282 Score: 214
Period size: 46 Copynumber: 4.5 Consensus size: 47
82423061 TATGTGTGCT
* * *
82423071 AGTGTAAGACATGTCTGGGACATGCATCGACCAC-A-TTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGATAT-AAAGCC
* *
82423117 AGTGTAAGACATGTCTGGGACATGCGTCGGCCTCGAGATATACAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGATATA-AAGCC
* * * * ** * *
82423165 AGTGTAAGACATGTCTGAGACATACATCGACATTGAGA-CGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGATATAAAGCC
* * * *
82423211 AATGCAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGATATA-AAGCC
*
82423259 AGTGTAAGACATGTCTAGGACATG
1 AGTGTAAGACATGTCTGGGACATG
82423283 GCGTCAGCTT
Statistics
Matches: 133, Mismatches: 28, Indels: 8
0.79 0.17 0.05
Matches are distributed among these distances:
46 65 0.49
47 4 0.03
48 64 0.48
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGATATAAAGCC
Found at i:82423374 original size:93 final size:96
Alignment explanation
Indices: 82423068--82423423 Score: 329
Period size: 94 Copynumber: 3.8 Consensus size: 96
82423058 TGATATGTGT
* * **** * **
82423068 GCTAGTGTAAGACATGTCTGGGACAT-GCATCGACCACATTATGAGAGCCAGTGTAAGACATGTC
1 GCTAGTGTAAGACATGTCTAGGACATGGCATCAACTTTGTTGTGCTAGCCAGTGTAAGACATGTC
*
82423132 TGGGACAT-GCGTCGGCCTCGAGATATACAA
66 TGGGACATGGCATCGGCCTCGAGATATACAA
* * * * * * ** * * *
82423162 GCCAGTGTAAGACATGTCT-GAGACAT-ACATCGACATTG-AGACGAGAGCTAATGCAAGACATG
1 GCTAGTGTAAGACATGTCTAG-GACATGGCATCAACTTTGTTG-TGCTAGCCAGTGTAAGACATG
82423224 TCTGGGACAT-GCATCGGCCTCGAGATATACAA
64 TCTGGGACATGGCATCGGCCTCGAGATATACAA
* * * *
82423256 GCTAGTGTAAGACATGTCTAGGACATGGCGTCAGC-TTGTTGTG-T-GTCAGTGTAAGACTTGTC
1 GCTAGTGTAAGACATGTCTAGGACATGGCATCAACTTTGTTGTGCTAGCCAGTGTAAGACATGTC
* *
82423318 TGGGACATGGCATTGGCCTCGATATATGA-AA
66 TGGGACATGGCATCGGCCTCGAGATAT-ACAA
* *
82423349 G-TCAGTGTAAGACCTGTTTAGGACATGGCATCAACTTTGTTGTGCTAGCCAGTGTAAGACCATG
1 GCT-AGTGTAAGACATGTCTAGGACATGGCATCAACTTTGTTGTGCTAGCCAGTGTAAGA-CATG
82423413 TCTGGGACATG
64 TCTGGGACATG
82423424 ACGTTGGCAT
Statistics
Matches: 216, Mismatches: 34, Indels: 21
0.80 0.13 0.08
Matches are distributed among these distances:
92 22 0.10
93 48 0.22
94 114 0.53
95 7 0.03
96 11 0.05
97 14 0.06
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (96 bp):
GCTAGTGTAAGACATGTCTAGGACATGGCATCAACTTTGTTGTGCTAGCCAGTGTAAGACATGTC
TGGGACATGGCATCGGCCTCGAGATATACAA
Found at i:82424784 original size:21 final size:20
Alignment explanation
Indices: 82424750--82424788 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
82424740 TGTCAAATGG
82424750 CCACACGTGCGTGTCGCCTTT
1 CCACACGTGCGTGT-GCCTTT
* *
82424771 CCACACTTGTGTGTGCCT
1 CCACACGTGCGTGTGCCT
82424789 CTGCTTCAAG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.10, C:0.36, G:0.23, T:0.31
Consensus pattern (20 bp):
CCACACGTGCGTGTGCCTTT
Found at i:82426674 original size:19 final size:19
Alignment explanation
Indices: 82426650--82426691 Score: 75
Period size: 19 Copynumber: 2.2 Consensus size: 19
82426640 GTTGTTTTCT
*
82426650 TTTTGATTCGCAGCCTCCC
1 TTTTGATTCACAGCCTCCC
82426669 TTTTGATTCACAGCCTCCC
1 TTTTGATTCACAGCCTCCC
82426688 TTTT
1 TTTT
82426692 AATCTTGTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.12, C:0.33, G:0.12, T:0.43
Consensus pattern (19 bp):
TTTTGATTCACAGCCTCCC
Found at i:82428191 original size:118 final size:113
Alignment explanation
Indices: 82428036--82428388 Score: 378
Period size: 114 Copynumber: 3.1 Consensus size: 113
82428026 ACAACACAAT
*
82428036 ACCACAAAATAGGACAATAATAAGGATTACAAAATAAACAAATAAATAATAATTGCAAAATAAAA
1 ACCACAAAATAGGAAAATAATAAGGATTAC-AAATAAACAAATAAATAATAATTGCAAAA-AAAA
*
82428101 ATAAAAATGTACCTTTAAAACTTAATATGCTACTGCCTCCTCTCCTTCCAAA
64 ATAAAAATGTACCTTTAAACCTTAATATG-T-CTGCCTCCTCTCCTTCCAAA
*
82428153 ACCACAAAATAGGATAAATAATAAGGATTACAAGATAAACAAATAAATAATAATTACAAAAAAAA
1 ACCACAAAATAGGA-AAATAATAAGGATTACAA-ATAAACAAATAAATAATAATTGCAAAAAAAA
* * ** * **
82428218 TTAAAAATGTATCACTAAACCTTAATATG-CTGCCTCCTCTTCTTTTAAA
64 ATAAAAATGTACCTTTAAACCTTAATATGTCTGCCTCCTCTCCTTCCAAA
* * * *
82428267 ATCGCAAAATAGGGCAAATAATAAGGATTACAAACAAACAAA-AAA-AATAA--G-AATTAAAAA
1 ACCACAAAATA-GGAAAATAATAAGGATTACAAATAAACAAATAAATAATAATTGCAA--AAAAA
* * * *
82428327 ACTAAAAATGTACCTTGAAACCCTTATATGATGT-TGCCTCCTCTCATTCCAAC
63 AATAAAAATGTACCTTTAAA-CCTTA-AT-ATGTCTGCCTCCTCTCCTTCCAAA
*
82428380 ACTACAAAA
1 ACCACAAAA
82428389 CCTTCTTCTA
Statistics
Matches: 199, Mismatches: 28, Indels: 22
0.80 0.11 0.09
Matches are distributed among these distances:
108 2 0.01
110 20 0.10
111 10 0.05
112 5 0.03
113 31 0.16
114 44 0.22
115 2 0.01
117 44 0.22
118 41 0.21
ACGTcount: A:0.50, C:0.17, G:0.08, T:0.25
Consensus pattern (113 bp):
ACCACAAAATAGGAAAATAATAAGGATTACAAATAAACAAATAAATAATAATTGCAAAAAAAAAT
AAAAATGTACCTTTAAACCTTAATATGTCTGCCTCCTCTCCTTCCAAA
Found at i:82432715 original size:72 final size:70
Alignment explanation
Indices: 82432584--82432726 Score: 268
Period size: 72 Copynumber: 2.0 Consensus size: 70
82432574 GTAATGTATG
82432584 ACATCTACTGGTTCATTGTTAAGAATTTTTTTTTTGTGTTTAATTAATCTTAAACTTTATTTAAG
1 ACATCTACTGGTTCATTGTTAAGAATTTTTTTTTTGTGTTTAATTAATCTTAAACTTTATTTAAG
82432649 AACAA
66 AACAA
82432654 ACATCTACTGGTTCATTGTTAAGAATTTTTTTTTTTTGTGTTTAATTAATCTTAAACTTTATTTA
1 ACATCTACTGGTTCATTGTTAAGAA--TTTTTTTTTTGTGTTTAATTAATCTTAAACTTTATTTA
82432719 AGAACAA
64 AGAACAA
82432726 A
1 A
82432727 AAGCCTAAAT
Statistics
Matches: 71, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
70 25 0.35
72 46 0.65
ACGTcount: A:0.31, C:0.10, G:0.10, T:0.49
Consensus pattern (70 bp):
ACATCTACTGGTTCATTGTTAAGAATTTTTTTTTTGTGTTTAATTAATCTTAAACTTTATTTAAG
AACAA
Found at i:82437520 original size:47 final size:46
Alignment explanation
Indices: 82437458--82437588 Score: 135
Period size: 47 Copynumber: 2.8 Consensus size: 46
82437448 TAGCATATCT
* *
82437458 GTGCCGATGCCATGTCCTAGACATGTTTTACACTAGCACTCGTC-TCAA
1 GTGCCGATG-CATGTCCCAGACATGTCTTACACTAGCACTC-TCAT-AA
* *
82437506 -TGCCGATGCTATGTCCCAGTCATGGTCTTACACT-G-GCTCTCATAA
1 GTGCCGATGC-ATGTCCCAGACAT-GTCTTACACTAGCACTCTCATAA
82437551 TGTGTCCGATGCATGTCCCAGACATGTCTTACACTAGC
1 -GTG-CCGATGCATGTCCCAGACATGTCTTACACTAGC
82437589 TCACACAAGT
Statistics
Matches: 70, Mismatches: 5, Indels: 16
0.77 0.05 0.18
Matches are distributed among these distances:
45 4 0.06
46 15 0.21
47 35 0.50
48 16 0.23
ACGTcount: A:0.21, C:0.29, G:0.20, T:0.30
Consensus pattern (46 bp):
GTGCCGATGCATGTCCCAGACATGTCTTACACTAGCACTCTCATAA
Found at i:82437956 original size:23 final size:23
Alignment explanation
Indices: 82437929--82437972 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
82437919 TAATTGGGAG
*
82437929 AAATGACCAATTTGCCCCTAACA
1 AAATGACCAATTTACCCCTAACA
*
82437952 AAATGACCATTTTACCCCTAA
1 AAATGACCAATTTACCCCTAA
82437973 GCCCGAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.39, C:0.30, G:0.07, T:0.25
Consensus pattern (23 bp):
AAATGACCAATTTACCCCTAACA
Found at i:82444492 original size:29 final size:29
Alignment explanation
Indices: 82444457--82444530 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
82444447 GTTGTGAGAT
* *
82444457 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
82444486 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
82444515 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
82444531 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:82446475 original size:11 final size:11
Alignment explanation
Indices: 82446459--82446514 Score: 67
Period size: 11 Copynumber: 4.9 Consensus size: 11
82446449 TAGATAATAT
82446459 TATTTTATTAA
1 TATTTTATTAA
*
82446470 TATTTTAATAATA
1 TATTTT-ATTA-A
*
82446483 TATTTTATTAT
1 TATTTTATTAA
*
82446494 TATTTTATTAT
1 TATTTTATTAA
82446505 TATTTTATTA
1 TATTTTATTA
82446515 GTATATAAAG
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
11 27 0.68
12 6 0.15
13 7 0.17
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:82448671 original size:46 final size:46
Alignment explanation
Indices: 82448619--82448938 Score: 480
Period size: 46 Copynumber: 7.0 Consensus size: 46
82448609 AGTGTGCTCT
*
82448619 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
82448665 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
82448711 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
82448757 GTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGTAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
82448803 GTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * *
82448849 GTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * *
82448895 ATGATA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCA
82448939 TTATGTCAAA
Statistics
Matches: 259, Mismatches: 14, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
45 1 0.00
46 258 1.00
ACGTcount: A:0.40, C:0.14, G:0.24, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:82453683 original size:48 final size:47
Alignment explanation
Indices: 82453630--82453744 Score: 167
Period size: 48 Copynumber: 2.4 Consensus size: 47
82453620 GTATTGCACA
* *
82453630 ATAGCCATTCGGCTTTACCAAATATACATCCCTCATACATATTTCAT
1 ATAGCCATTCGGCTTTACCAAATATACATACCTCATACATATCTCAT
* * * *
82453677 ATTAGCCATTTGGCTTTACCACATATACATATCTCATACATGTCTCAT
1 A-TAGCCATTCGGCTTTACCAAATATACATACCTCATACATATCTCAT
82453725 ATAGCCATTCGGCTTTACCA
1 ATAGCCATTCGGCTTTACCA
82453745 CACATATATA
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
47 19 0.32
48 41 0.68
ACGTcount: A:0.30, C:0.27, G:0.09, T:0.35
Consensus pattern (47 bp):
ATAGCCATTCGGCTTTACCAAATATACATACCTCATACATATCTCAT
Found at i:82459996 original size:48 final size:48
Alignment explanation
Indices: 82459925--82460452 Score: 813
Period size: 48 Copynumber: 11.0 Consensus size: 48
82459915 ATAAATATAT
* *
82459925 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCAAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * *
82459973 ATATGTATGAGATATGTATATGTGGTAAAGCTGAATGGCAAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
82460021 ATATGTATGAGATATGTATATGTGGCAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
82460069 ATATATATAAGATATTTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
82460117 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
82460165 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * * *
82460213 ATATATGTGTGATATGTAGATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
82460261 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
** *
82460309 ATATATGCGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * * *
82460357 ATATATGTGTGATATGTAGATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
82460405 ATATGTATGAGATATGAATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
82460453 TGTTGTAACA
Statistics
Matches: 448, Mismatches: 32, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 448 1.00
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.31
Consensus pattern (48 bp):
ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
Found at i:82460547 original size:37 final size:37
Alignment explanation
Indices: 82460497--82460646 Score: 255
Period size: 37 Copynumber: 4.1 Consensus size: 37
82460487 GGAAATATAT
*
82460497 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
82460534 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
82460571 TCCGGGTAAGACCCGATGACTACGTGTGGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
82460608 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
82460645 TC
1 TC
82460647 TGAGCTAAAG
Statistics
Matches: 107, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 107 1.00
ACGTcount: A:0.23, C:0.19, G:0.33, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:82467713 original size:29 final size:29
Alignment explanation
Indices: 82467642--82467705 Score: 92
Period size: 29 Copynumber: 2.2 Consensus size: 29
82467632 TGACGAGATT
* * *
82467642 GGCACTAAGTGTGCATGCTGGGAATATAT
1 GGCACTAAGTGTGCATGCTAGAAATATAC
*
82467671 GGTACTAAGTGTGCATGCTAGAAATATAC
1 GGCACTAAGTGTGCATGCTAGAAATATAC
82467700 GGCACT
1 GGCACT
82467706 GGGTGTGCGA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.27
Consensus pattern (29 bp):
GGCACTAAGTGTGCATGCTAGAAATATAC
Found at i:82469323 original size:46 final size:45
Alignment explanation
Indices: 82469269--82469429 Score: 180
Period size: 46 Copynumber: 3.5 Consensus size: 45
82469259 GCCAATGCCA
82469269 GTCCCAGACATGTCTTACACTGGCTTACGTCTCGAGGCCGATGCAT
1 GTCCCAGACATGTCTTACACTGGCTT-CGTCTCGAGGCCGATGCAT
* * * *
82469315 GTCCCAGACATGTCTTACACTAGCACTCGTCTCAATGCCGATGCCAT
1 GTCCCAGACATGTCTTACACTGGC-TTCGTCTCGAGGCCGATG-CAT
* * * * *
82469362 GTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGCTGATGCGT
1 GTCCCAGACAT-GTCTTACACTGGCT-TCGT-CTCGAGGCCGATGCAT
82469409 GTCCCAGACATGTCTTACACT
1 GTCCCAGACATGTCTTACACT
82469430 AGCTCACACA
Statistics
Matches: 97, Mismatches: 13, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
46 47 0.48
47 28 0.29
48 21 0.22
49 1 0.01
ACGTcount: A:0.21, C:0.30, G:0.21, T:0.27
Consensus pattern (45 bp):
GTCCCAGACATGTCTTACACTGGCTTCGTCTCGAGGCCGATGCAT
Found at i:82469379 original size:94 final size:92
Alignment explanation
Indices: 82469258--82469432 Score: 246
Period size: 94 Copynumber: 1.9 Consensus size: 92
82469248 AGCATATCTG
* *
82469258 TGCCAATGCCAGTCCCAGACATGTCTTACACTGGCT-TACGT-CTCGAGGCCGATGCATGTCCCA
1 TGCCAATGCCAGTCCCAGACATGTCTTACACTGGCTCT-CATAAT-GAGGCCGATGCATGTCCCA
82469321 GACATGTCTTACACTAGCACTCGTCTCAA
64 GACATGTCTTACACTAGCACTCGTCTCAA
* * * *
82469350 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCTGATGCGTGTCCCA
1 TGCCAATGCCA-GTCCCAGACAT-GTCTTACACTGGCTCTCATAATGAGGCCGATGCATGTCCCA
82469415 GACATGTCTTACACTAGC
64 GACATGTCTTACACTAGC
82469433 TCACACAAGT
Statistics
Matches: 73, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
92 10 0.14
93 11 0.15
94 50 0.68
95 2 0.03
ACGTcount: A:0.22, C:0.31, G:0.21, T:0.26
Consensus pattern (92 bp):
TGCCAATGCCAGTCCCAGACATGTCTTACACTGGCTCTCATAATGAGGCCGATGCATGTCCCAGA
CATGTCTTACACTAGCACTCGTCTCAA
Found at i:82473013 original size:40 final size:40
Alignment explanation
Indices: 82472905--82473114 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
82472895 CGGGATTTAA
* * * * *
82472905 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
82472945 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
82472985 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
82473025 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
82473065 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
82473105 CCGGATATAT
1 CCGGATATAT
82473115 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:82481149 original size:40 final size:40
Alignment explanation
Indices: 82481041--82481250 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
82481031 CGGGATTTAA
* * * * *
82481041 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
82481081 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
82481121 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
82481161 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
82481201 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
82481241 CCGGATATAT
1 CCGGATATAT
82481251 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:82488655 original size:40 final size:40
Alignment explanation
Indices: 82488589--82488731 Score: 130
Period size: 40 Copynumber: 3.6 Consensus size: 40
82488579 AAATTGAATG
* * *
82488589 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGAAACT
* * ***
82488628 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGAAACT
* * ** *
82488668 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-ATGCTAGAAACT
*
82488708 CTATCCGGGCT-AGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
82488732 TTTGTGCACG
Statistics
Matches: 87, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
39 28 0.32
40 59 0.68
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGAAACT
Found at i:82488732 original size:39 final size:39
Alignment explanation
Indices: 82488627--82488754 Score: 143
Period size: 40 Copynumber: 3.2 Consensus size: 39
82488617 TGCTGGAAAT
* * *
82488627 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
82488667 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
82488707 TCTATCCGGGCT-AGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
82488746 TATATCCGG
1 TATATCCGG
82488755 TTATATTCCG
Statistics
Matches: 77, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
38 1 0.01
39 32 0.42
40 44 0.57
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:82490302 original size:37 final size:37
Alignment explanation
Indices: 82490247--82490370 Score: 223
Period size: 37 Copynumber: 3.3 Consensus size: 37
82490237 AACTTGGAAA
82490247 TATGTTCCGGGTGA-GACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGT-ACGACCCGATGACTACGTGTGGAGAT
82490285 TATGTCCGGGTACGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTACGACCCGATGACTACGTGTGGAGAT
82490322 TATGTCCGGGTACGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTACGACCCGATGACTACGTGTGGAGAT
82490359 TATGTCCGGGTA
1 TATGTCCGGGTA
82490371 AGACTTCGTA
Statistics
Matches: 85, Mismatches: 0, Indels: 3
0.97 0.00 0.03
Matches are distributed among these distances:
36 1 0.01
37 80 0.94
38 4 0.05
ACGTcount: A:0.21, C:0.20, G:0.33, T:0.26
Consensus pattern (37 bp):
TATGTCCGGGTACGACCCGATGACTACGTGTGGAGAT
Found at i:82493255 original size:27 final size:26
Alignment explanation
Indices: 82493211--82493262 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
82493201 CTCGCTGCAA
*
82493211 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
82493238 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
82493263 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:82493339 original size:27 final size:26
Alignment explanation
Indices: 82493301--82493360 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
82493291 CCACATATAT
* *
82493301 ATATTTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
82493327 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
82493354 ATATCTG
1 ATATCTG
82493361 GCAGCCTGCT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.37
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:82497821 original size:19 final size:21
Alignment explanation
Indices: 82497783--82497821 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
82497773 GAACAATGAG
*
82497783 AGAGTTCTGTGTTACCGAAGT
1 AGAGTTCTGTATTACCGAAGT
82497804 AGAGTT-TGTATT-CCGAAG
1 AGAGTTCTGTATTACCGAAG
82497822 GATTCTGAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 6 0.35
20 5 0.29
21 6 0.35
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.33
Consensus pattern (21 bp):
AGAGTTCTGTATTACCGAAGT
Found at i:82497840 original size:66 final size:66
Alignment explanation
Indices: 82497758--82497895 Score: 249
Period size: 66 Copynumber: 2.1 Consensus size: 66
82497748 ATGGGGATAC
*
82497758 TTCTGAGTTCGGAATGAACAATGAGAGAGTTCTGTGTTACCGAAGTAGAGTTTGTATTCCGAAGG
1 TTCTGAGTTCGGAATGAACAATGAGAGAGTTCTGTGTTACCAAAGTAGAGTTTGTATTCCGAAGG
82497823 A
66 A
*
82497824 TTCTGAGTTCGGAATGAACAGTGAGAGAGTTCTGTGTTACCAAAGTAGAGTTTGTATTCCGAAGG
1 TTCTGAGTTCGGAATGAACAATGAGAGAGTTCTGTGTTACCAAAGTAGAGTTTGTATTCCGAAGG
82497889 A
66 A
*
82497890 CTCTGA
1 TTCTGA
82497896 CTTGAGGCAA
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
66 69 1.00
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.30
Consensus pattern (66 bp):
TTCTGAGTTCGGAATGAACAATGAGAGAGTTCTGTGTTACCAAAGTAGAGTTTGTATTCCGAAGG
A
Found at i:82503251 original size:40 final size:40
Alignment explanation
Indices: 82503186--82503393 Score: 303
Period size: 40 Copynumber: 5.2 Consensus size: 40
82503176 TCTTCGGAAT
* ** *
82503186 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
82503225 TTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
82503265 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
82503305 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
82503345 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGGC
1 TTAGCCCGGATATAA-CAACTCGCACAAATGCCTTCGGGTC
82503385 TTAGCCCGG
1 TTAGCCCGG
82503394 GTATCATTCA
Statistics
Matches: 154, Mismatches: 13, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
39 3 0.02
40 150 0.97
41 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
Found at i:82511315 original size:40 final size:40
Alignment explanation
Indices: 82511250--82511417 Score: 223
Period size: 40 Copynumber: 4.2 Consensus size: 40
82511240 TCTTCGGAAT
* ** *
82511250 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
82511289 TTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
82511329 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
82511369 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGGC
1 TTAGCCCGGATATAA-CAACTCGCACAAATGCCTTCGGGTC
82511409 TTAGCCCGG
1 TTAGCCCGG
82511418 GTATCATTCA
Statistics
Matches: 114, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
39 3 0.03
40 110 0.96
41 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
Found at i:82514046 original size:58 final size:57
Alignment explanation
Indices: 82513908--82514048 Score: 149
Period size: 57 Copynumber: 2.5 Consensus size: 57
82513898 ATGTATACAA
* * ** ** *
82513908 CAGGATTACCAGTCCAGGCTAAATCCTTTTTATAACATATACTCTAAGGAGCTTGAT
1 CAGGATTACCCGTCCGGGCTAAATCCAATCCATAACATATACTCGAAGGAGCTTGAT
* * * * *
82513965 CTGAATTACCCGTCTGGGCTAAATCCAATCCATAACATATGCTCGAGAGGA-CTTATAT
1 CAGGATTACCCGTCCGGGCTAAATCCAATCCATAACATATACTCGA-AGGAGCTT-GAT
82514023 CAGGATTACCCGTCCGGGCTAAATCC
1 CAGGATTACCCGTCCGGGCTAAATCC
82514049 TTTCTATAAT
Statistics
Matches: 67, Mismatches: 15, Indels: 3
0.79 0.18 0.04
Matches are distributed among these distances:
57 38 0.57
58 29 0.43
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.28
Consensus pattern (57 bp):
CAGGATTACCCGTCCGGGCTAAATCCAATCCATAACATATACTCGAAGGAGCTTGAT
Found at i:82522342 original size:6 final size:6
Alignment explanation
Indices: 82522324--82522420 Score: 56
Period size: 6 Copynumber: 15.8 Consensus size: 6
82522314 AAGAAACATT
* * * *
82522324 ATCAGA A-CTAGA ATCAGA AACAGA ATCAAA ATTAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * * *
82522373 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA ACCAGT ATCAG
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCAG
82522421 GTAACAGAAT
Statistics
Matches: 68, Mismatches: 15, Indels: 16
0.69 0.15 0.16
Matches are distributed among these distances:
5 4 0.06
6 56 0.82
7 6 0.09
8 2 0.03
ACGTcount: A:0.48, C:0.16, G:0.18, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:82522371 original size:31 final size:31
Alignment explanation
Indices: 82522333--82522430 Score: 108
Period size: 31 Copynumber: 3.2 Consensus size: 31
82522323 TATCAGAACT
* *
82522333 AGAATCAGAAACAGAATCAAAATTAGGTGAC
1 AGAATCAGAAACAGAATCAAAATCAGGTAAC
* **
82522364 AGAATCAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAAACAGAATCAAAATCAGGTAAC
* **
82522395 AGAATCA-AAATCAGAACCAGTATCAGGTAAC
1 AGAATCAGAAA-CAGAATCAAAATCAGGTAAC
82522426 AGAAT
1 AGAAT
82522431 AAAAAATGAG
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
30 2 0.03
31 57 0.97
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.17
Consensus pattern (31 bp):
AGAATCAGAAACAGAATCAAAATCAGGTAAC
Found at i:82522610 original size:27 final size:26
Alignment explanation
Indices: 82522580--82522681 Score: 132
Period size: 27 Copynumber: 3.8 Consensus size: 26
82522570 GCTCAGTTAT
* *
82522580 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGA-A
82522607 CAGATATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
*
82522633 CAGATATTTGTGGCATAGCCACCAGAAA
1 CAGATA-TTGTGGCAGAGCCACCAG-AA
* *
82522661 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
82522682 TTAACAGAAT
Statistics
Matches: 68, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
26 7 0.10
27 53 0.78
28 8 0.12
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.19
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:82524303 original size:27 final size:28
Alignment explanation
Indices: 82524273--82524340 Score: 111
Period size: 27 Copynumber: 2.5 Consensus size: 28
82524263 AGTGAGTCCA
82524273 CACACTTAGTGCTATATAATC-AACTCG
1 CACACTTAGTGCTATATAATCAAACTCG
* *
82524300 CACACTTAGTGCTATGTGATCAAACTCG
1 CACACTTAGTGCTATATAATCAAACTCG
82524328 CACACTTAGTGCT
1 CACACTTAGTGCT
82524341 GTACAAATTT
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 19 0.50
28 19 0.50
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.29
Consensus pattern (28 bp):
CACACTTAGTGCTATATAATCAAACTCG
Found at i:82525890 original size:22 final size:22
Alignment explanation
Indices: 82525862--82525926 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
82525852 GTCACAACGT
*
82525862 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* * *
82525884 TTGGCACAGAGCTAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
82525906 TTGACACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
82525927 AAGGCTTTAA
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
21 2 0.06
22 30 0.88
23 2 0.06
ACGTcount: A:0.34, C:0.22, G:0.23, T:0.22
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:82526409 original size:27 final size:27
Alignment explanation
Indices: 82526353--82526817 Score: 628
Period size: 27 Copynumber: 17.3 Consensus size: 27
82526343 GGGGCAAAAT
* * *
82526353 GGTAATTTTACCC-ACA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
82526378 GGTAATTCCACCCTACAGCGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
82526405 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
82526432 GGTAATTCTACCCTACAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
82526459 GATAATTCTACCCTATAGAGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
82526486 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
82526513 GGTAATTCTACCCTACAGGGGGTATTTC
1 GGTAATTCTACCCTACA-GGGGTATTTC
* *
82526541 GATAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
82526568 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
82526595 GGTAATTTTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
**
82526622 AATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
82526649 GGTAATTCTACCCTACAGGGGTATTTA
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
82526676 GGTAATTCTACCCTATAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
82526703 GATAATTCTACCTTATAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
82526730 GGTAATTTTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
82526757 GGTAATTCTACCCTATAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
82526784 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
82526811 GGTAATT
1 GGTAATT
82526818 TTGTAAATCG
Statistics
Matches: 386, Mismatches: 51, Indels: 4
0.88 0.12 0.01
Matches are distributed among these distances:
25 11 0.03
26 3 0.01
27 347 0.90
28 25 0.06
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:82526831 original size:27 final size:27
Alignment explanation
Indices: 82526799--82527169 Score: 334
Period size: 27 Copynumber: 13.7 Consensus size: 27
82526789 TTCTACCCTA
* **
82526799 CAAGGGTATTTCGGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *** **
82526826 CGAGGGTAAAACT-GTAATTTTGTAAAT
1 CAAGGGT-ATTTTGGTAATTTTACAAAT
* *
82526853 CAAGGGTACTTTGGTAATTTTACAAGT
1 CAAGGGTATTTTGGTAATTTTACAAAT
** *** **
82526880 TGAGGGTATTTCAATAATTTTACAGGT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* ** *
82526907 CGAGGGTATTTCAGTAATTTCACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
*
82526934 CAGGGGTATTTTGGTAATTTTACAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * *
82526960 CTAGGGGTATTTTGATAATTTTACAAAC
1 C-AAGGGTATTTTGGTAATTTTACAAAT
*
82526988 CAAGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
82527015 CAGGGGTATTTTGGTAATTTTATAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
82527041 CAAAAGGTATTTTAGTAATTTTACAAAT
1 C-AAGGGTATTTTGGTAATTTTACAAAT
* ** *
82527069 TAAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
82527096 CAAGGGTATTTTGGTAATTTTATAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
82527123 CAAGGGTATTTTAGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
*
82527150 CAGGGGTATTTTGGTAATTT
1 CAAGGGTATTTTGGTAATTT
82527170 GGTAAACTAA
Statistics
Matches: 288, Mismatches: 50, Indels: 12
0.82 0.14 0.03
Matches are distributed among these distances:
26 4 0.01
27 282 0.98
28 2 0.01
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAT
Found at i:82527176 original size:27 final size:27
Alignment explanation
Indices: 82526839--82527169 Score: 347
Period size: 27 Copynumber: 12.3 Consensus size: 27
82526829 GGGTAAAACT
** * *
82526839 GTAATTTTGTAAATCAAGGGTACTTTG
1 GTAATTTTACAAACCAAGGGTATTTTG
**** **
82526866 GTAATTTTACAAGTTGAGGGTATTTCA
1 GTAATTTTACAAACCAAGGGTATTTTG
* *** * **
82526893 ATAATTTTACAGGTCGAGGGTATTTCA
1 GTAATTTTACAAACCAAGGGTATTTTG
* * *
82526920 GTAATTTCACAAATCAGGGGTATTTTG
1 GTAATTTTACAAACCAAGGGTATTTTG
* *
82526947 GTAATTTTACAAACTAGGGGTATTTTG
1 GTAATTTTACAAACCAAGGGTATTTTG
*
82526974 ATAATTTTACAAACCAAGGGTATTTTG
1 GTAATTTTACAAACCAAGGGTATTTTG
*
82527001 GTAATTTTACAAACCAGGGGTATTTTG
1 GTAATTTTACAAACCAAGGGTATTTTG
* * * *
82527028 GTAATTTTATAAACAAAAGGTATTTTA
1 GTAATTTTACAAACCAAGGGTATTTTG
**
82527055 GTAATTTTACAAATTAAGGGTATTTTG
1 GTAATTTTACAAACCAAGGGTATTTTG
**
82527082 GTAATTTTGTAAACCAAGGGTATTTTG
1 GTAATTTTACAAACCAAGGGTATTTTG
* *
82527109 GTAATTTTATAAACCAAGGGTATTTTA
1 GTAATTTTACAAACCAAGGGTATTTTG
*
82527136 GTAATTTTACAAACCAGGGGTATTTTG
1 GTAATTTTACAAACCAAGGGTATTTTG
82527163 GTAATTT
1 GTAATTT
82527170 GGTAAACTAA
Statistics
Matches: 258, Mismatches: 46, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 258 1.00
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAACCAAGGGTATTTTG
Found at i:82533425 original size:43 final size:43
Alignment explanation
Indices: 82533290--82533461 Score: 170
Period size: 43 Copynumber: 4.0 Consensus size: 43
82533280 ACATAGGATC
* * * *
82533290 CGATATGTGTTTTCATGTAAGACCACGTCTGGGACGTTGGAAT
1 CGATATTTGATTTCATGTAAGACCACGTCTGGGACATTGGCAT
* * * *
82533333 CGACT-TATGATTTACGTGTAAGATCACGTCTGGGACGTTGGC-T
1 CGA-TATTTGATTT-CATGTAAGACCACGTCTGGGACATTGGCAT
** * *
82533376 TTATATTTGATTTCGTGTAAGACC-CTGTCTGGGACAATGGCAT
1 CGATATTTGATTTCATGTAAGACCAC-GTCTGGGACATTGGCAT
* *
82533419 CGATATTTGATTACATGTAAGACCACGTCTGGGACATTAGCAT
1 CGATATTTGATTTCATGTAAGACCACGTCTGGGACATTGGCAT
82533462 TGTATGAGCT
Statistics
Matches: 106, Mismatches: 17, Indels: 12
0.79 0.13 0.09
Matches are distributed among these distances:
41 1 0.01
42 24 0.23
43 54 0.51
44 27 0.25
ACGTcount: A:0.24, C:0.17, G:0.25, T:0.33
Consensus pattern (43 bp):
CGATATTTGATTTCATGTAAGACCACGTCTGGGACATTGGCAT
Found at i:82534528 original size:54 final size:54
Alignment explanation
Indices: 82534463--82534578 Score: 160
Period size: 54 Copynumber: 2.1 Consensus size: 54
82534453 GCTGTGTGGG
** * * *
82534463 AAGTCAGTTTCGATGACGAGCTAGACACACGAGTGTGTGGTCAGCAGTTTGGCC
1 AAGTCAGTTTCGACCACGAGCTAGACACACGAGCGTGTGGTCAGCAGTGTGGAC
* * *
82534517 AAGTCAGTTTCGACCAGGGGCTAGACACACGAGCGTGTGGTCAGCCGTGTGGAC
1 AAGTCAGTTTCGACCACGAGCTAGACACACGAGCGTGTGGTCAGCAGTGTGGAC
82534571 AAGTCAGT
1 AAGTCAGT
82534579 ATGTATGCCC
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.24, C:0.22, G:0.33, T:0.22
Consensus pattern (54 bp):
AAGTCAGTTTCGACCACGAGCTAGACACACGAGCGTGTGGTCAGCAGTGTGGAC
Found at i:82559607 original size:17 final size:18
Alignment explanation
Indices: 82559582--82559620 Score: 62
Period size: 17 Copynumber: 2.2 Consensus size: 18
82559572 AGGCCAATTT
82559582 GGGCCTGTGGG-CCACAC
1 GGGCCTGTGGGCCCACAC
*
82559599 GGGCGTGTGGGCCCACAC
1 GGGCCTGTGGGCCCACAC
82559617 GGGC
1 GGGC
82559621 AGGCCACATG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 10 0.50
18 10 0.50
ACGTcount: A:0.10, C:0.33, G:0.46, T:0.10
Consensus pattern (18 bp):
GGGCCTGTGGGCCCACAC
Found at i:82569007 original size:40 final size:37
Alignment explanation
Indices: 82568963--82569181 Score: 163
Period size: 40 Copynumber: 5.9 Consensus size: 37
82568953 TGCTGGAAAT
* *
82568963 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGT--C
82569003 TATATCCGGGCTAAGA-CCGAAGGCATTCGTGCGAGTC
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTC
** * * *
82569040 -ATTCATCCGGGCTAAG---CTTATGC--TG-G-AAAT-
1 TA-T-ATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTC
*
82569070 TATATCCGGG-TAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGT--C
82569109 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTC
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTC
*
82569147 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 --TATATCCGGGCTAAGACCCGAAGGCA-TTGTGC
82569182 ACCGGTTATA
Statistics
Matches: 145, Mismatches: 14, Indels: 40
0.73 0.07 0.20
Matches are distributed among these distances:
28 4 0.03
29 7 0.05
30 1 0.01
31 7 0.05
32 1 0.01
33 1 0.01
34 3 0.02
35 1 0.01
36 7 0.05
37 2 0.01
38 16 0.11
39 28 0.19
40 65 0.45
41 2 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (37 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTC
Found at i:82569143 original size:107 final size:108
Alignment explanation
Indices: 82568950--82569163 Score: 405
Period size: 107 Copynumber: 2.0 Consensus size: 108
82568940 CCGAAGACAA
82568950 TTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTATATCCGGGCT
1 TTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTATATCCGGGCT
82569015 AAGACCGAAGGCATTCGTGCGAGTCATTC-ATCCGGGCTAAGC
66 AAGACCGAAGGCATTCGTGCGAGTCATTCTATCCGGGCTAAGC
82569057 TTATGCTGGAAATTATATCCGGG-TAAGACCCGAAGGCAATTGTGCTAGTGGCTATATCCGGGCT
1 TTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTATATCCGGGCT
82569121 AAGACCCGAAGGCATTCGTGCGAGTCATTCTATCCGGGCTAAG
66 AAGA-CCGAAGGCATTCGTGCGAGTCATTCTATCCGGGCTAAG
82569164 ACCCGAAGGC
Statistics
Matches: 105, Mismatches: 0, Indels: 3
0.97 0.00 0.03
Matches are distributed among these distances:
106 45 0.43
107 48 0.46
108 12 0.11
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (108 bp):
TTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTATATCCGGGCT
AAGACCGAAGGCATTCGTGCGAGTCATTCTATCCGGGCTAAGC
Found at i:82576654 original size:44 final size:45
Alignment explanation
Indices: 82576591--82576684 Score: 136
Period size: 44 Copynumber: 2.1 Consensus size: 45
82576581 TAGAATTCCG
* * *
82576591 ATATGTGTTTTTGTGTAAGATCACGTCT-GGACATTGGCATCGTT
1 ATATGCGTTTTTGTGTAAGACCACGTCTGGGACATTGGCATCGAT
**
82576635 ATATGCGTTTTTGTGTAAGACCACGTCTGGGATGTTGGCATCGAT
1 ATATGCGTTTTTGTGTAAGACCACGTCTGGGACATTGGCATCGAT
82576680 ATATG
1 ATATG
82576685 TGGTTACATG
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 26 0.59
45 18 0.41
ACGTcount: A:0.21, C:0.14, G:0.27, T:0.38
Consensus pattern (45 bp):
ATATGCGTTTTTGTGTAAGACCACGTCTGGGACATTGGCATCGAT
Found at i:82576697 original size:45 final size:44
Alignment explanation
Indices: 82576604--82576700 Score: 104
Period size: 45 Copynumber: 2.2 Consensus size: 44
82576594 TGTGTTTTTG
* * * ***
82576604 TGTAAGATCACGTCTGGACATTGGCATCGTTATATGCGTTTTTG
1 TGTAAGACCACGTCTGGACATTGGCATCGATATATGCGGTTACA
** *
82576648 TGTAAGACCACGTCTGGGATGTTGGCATCGATATATGTGGTTACA
1 TGTAAGACCACGTCT-GGACATTGGCATCGATATATGCGGTTACA
82576693 TGTAAGAC
1 TGTAAGAC
82576701 ATATCTAGGA
Statistics
Matches: 43, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
44 14 0.33
45 29 0.67
ACGTcount: A:0.24, C:0.15, G:0.27, T:0.34
Consensus pattern (44 bp):
TGTAAGACCACGTCTGGACATTGGCATCGATATATGCGGTTACA
Found at i:82584563 original size:6 final size:6
Alignment explanation
Indices: 82584533--82584723 Score: 97
Period size: 6 Copynumber: 31.0 Consensus size: 6
82584523 AAGAAACATT
* * *
82584533 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAAA ATCAGA ATCAG-
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * * * * *
82584580 GTGACAAA ATTAAA ATCAGA ATCAGA ATTAGA ATTAGGTA A-CAGA ATCAGA
1 AT--CAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
* * * *
82584631 ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA ACCAGA ATCAGA ATTAAGTA
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA A-TCAG-A
* * *
82584682 A-CAGA ATCAAA ATTAGT ATCAGGTA AT-AGA ATCAGA ATCAGA
1 ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA
82584724 GTGTGAATGC
Statistics
Matches: 140, Mismatches: 28, Indels: 34
0.69 0.14 0.17
Matches are distributed among these distances:
5 11 0.08
6 108 0.77
7 13 0.09
8 8 0.06
ACGTcount: A:0.51, C:0.13, G:0.16, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:82584624 original size:25 final size:25
Alignment explanation
Indices: 82584596--82584662 Score: 98
Period size: 25 Copynumber: 2.7 Consensus size: 25
82584586 AAATTAAAAT
* *
82584596 CAGAATCAGAATTAGAATTAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
*
82584621 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
*
82584646 CAGAATCAAAATCAGAA
1 CAGAATCAGAATCAGAA
82584663 CCAGAATCAG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.49, C:0.13, G:0.18, T:0.19
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATCAGGTAA
Found at i:82584634 original size:37 final size:37
Alignment explanation
Indices: 82584547--82584641 Score: 109
Period size: 37 Copynumber: 2.6 Consensus size: 37
82584537 GAACTAGAAT
* * *
82584547 CAAAATGAGAATCAGAATCAAAATCAGAATCAGGTGA
1 CAAAATCAGAATCAGAATCAGAATCAGAATCAGGTAA
* * * *
82584584 CAAAATTAAAATCAGAATCAGAATTAGAATTAGGTAA
1 CAAAATCAGAATCAGAATCAGAATCAGAATCAGGTAA
* *
82584621 CAGAATCAGAATCAGTATCAG
1 CAAAATCAGAATCAGAATCAG
82584642 GTAACAGAAT
Statistics
Matches: 48, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 48 1.00
ACGTcount: A:0.51, C:0.13, G:0.17, T:0.20
Consensus pattern (37 bp):
CAAAATCAGAATCAGAATCAGAATCAGAATCAGGTAA
Found at i:82584649 original size:19 final size:18
Alignment explanation
Indices: 82584627--82584690 Score: 67
Period size: 19 Copynumber: 3.4 Consensus size: 18
82584617 GTAACAGAAT
*
82584627 CAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCA-GTAA
*
82584646 CAGAATCAAAATCAG-AA
1 CAGAATCAGAATCAGTAA
*
82584663 CCAGAATCAGAATTAAGTAA
1 -CAGAATCAGAA-TCAGTAA
82584683 CAGAATCA
1 CAGAATCA
82584691 AAATTAGTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
17 2 0.05
18 11 0.29
19 23 0.61
20 2 0.05
ACGTcount: A:0.50, C:0.17, G:0.16, T:0.17
Consensus pattern (18 bp):
CAGAATCAGAATCAGTAA
Done.