Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 262 of 318
Found at i:83008538 original size:15 final size:15
Alignment explanation
Indices: 83008515--83008544 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
83008505 GAATGAAAAC
*
83008515 GAAATAGAAAGGAAA
1 GAAAAAGAAAGGAAA
83008530 GAAAAAGAAAGGAAA
1 GAAAAAGAAAGGAAA
83008545 AATAGGGTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.70, C:0.00, G:0.27, T:0.03
Consensus pattern (15 bp):
GAAAAAGAAAGGAAA
Found at i:83016170 original size:71 final size:71
Alignment explanation
Indices: 83016083--83016222 Score: 226
Period size: 71 Copynumber: 2.0 Consensus size: 71
83016073 CCTTCTTGAC
* ** * *
83016083 AGACTTGTCAGGCAACAACATTCCTCTTACCATATAAAGTATTTGAGCTCTAACATATCAATCAA
1 AGACTTGTCAGACAACAACATTCAACTTACCATATAAAGCATTTGAGCTCTAACATATCAACCAA
83016148 TCTCAT
66 TCTCAT
*
83016154 AGACTTGTCCGACAACAACATTCAACTTACCATATAAAGCATTTGAGCTCTAACATATCAACCAA
1 AGACTTGTCAGACAACAACATTCAACTTACCATATAAAGCATTTGAGCTCTAACATATCAACCAA
83016219 TCTC
66 TCTC
83016223 CTTCACAATT
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
71 63 1.00
ACGTcount: A:0.36, C:0.26, G:0.09, T:0.29
Consensus pattern (71 bp):
AGACTTGTCAGACAACAACATTCAACTTACCATATAAAGCATTTGAGCTCTAACATATCAACCAA
TCTCAT
Found at i:83016970 original size:25 final size:25
Alignment explanation
Indices: 83016942--83016990 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
83016932 ACAAAGGACA
83016942 AATAAAGGTTTTAGTCAGACTTCAG
1 AATAAAGGTTTTAGTCAGACTTCAG
83016967 AATAAAGGTTTTAGTCAGACTTCA
1 AATAAAGGTTTTAGTCAGACTTCA
83016991 CAATTTAGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.37, C:0.12, G:0.18, T:0.33
Consensus pattern (25 bp):
AATAAAGGTTTTAGTCAGACTTCAG
Found at i:83021010 original size:38 final size:39
Alignment explanation
Indices: 83020967--83021045 Score: 151
Period size: 39 Copynumber: 2.1 Consensus size: 39
83020957 TTACTGCCCG
83020967 ATAC-TTTTTTTTTGGTTACTAAAATTTATTAAGTTTAT
1 ATACTTTTTTTTTTGGTTACTAAAATTTATTAAGTTTAT
83021005 ATACTTTTTTTTTTGGTTACTAAAATTTATTAAGTTTAT
1 ATACTTTTTTTTTTGGTTACTAAAATTTATTAAGTTTAT
83021044 AT
1 AT
83021046 TCAAGAACAA
Statistics
Matches: 40, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
38 4 0.10
39 36 0.90
ACGTcount: A:0.29, C:0.05, G:0.08, T:0.58
Consensus pattern (39 bp):
ATACTTTTTTTTTTGGTTACTAAAATTTATTAAGTTTAT
Found at i:83025203 original size:30 final size:30
Alignment explanation
Indices: 83025150--83025236 Score: 95
Period size: 30 Copynumber: 2.9 Consensus size: 30
83025140 AATCACTTAA
* * * *
83025150 ATTAAAAAAATTATAATTGAATTATTACATT
1 ATTAAAAAATTTAT-TTTAAATTATTAAATT
*
83025181 ATT-AAAAATTTTTATTTAAATTATTAAATT
1 ATTAAAAAATTTAT-TTTAAATTATTAAATT
*
83025211 ATTAAAAAATTTATTTTAAATCATTA
1 ATTAAAAAATTTATTTTAAATTATTA
83025237 TAAGAACGTA
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
30 36 0.75
31 12 0.25
ACGTcount: A:0.49, C:0.02, G:0.01, T:0.47
Consensus pattern (30 bp):
ATTAAAAAATTTATTTTAAATTATTAAATT
Found at i:83028859 original size:20 final size:20
Alignment explanation
Indices: 83028826--83028864 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
83028816 TGGAGTAGGA
*
83028826 ATATCAATACCTTATGAAAT
1 ATATCAATACCTTAAGAAAT
* *
83028846 ATATCGATATCTTAAGAAA
1 ATATCAATACCTTAAGAAA
83028865 AGTATTGATA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.46, C:0.13, G:0.08, T:0.33
Consensus pattern (20 bp):
ATATCAATACCTTAAGAAAT
Found at i:83032098 original size:47 final size:44
Alignment explanation
Indices: 83032033--83032154 Score: 147
Period size: 47 Copynumber: 2.6 Consensus size: 44
83032023 ATTTGTTTGT
83032033 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGTCACATT-ATGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGG---CATTGATGA
* *
83032079 GAGCCAGTGTAAGACCATGTCTGGGACAGAGCATCGGCATTGAGATGA
1 GAGCTAGTGTAAGA-CATGTCTGGGACA-TGCATCGGCATT--GATGA
*
83032127 GAGTTAGTGTAAGACATGTCTGGGACAT
1 GAGCTAGTGTAAGACATGTCTGGGACAT
83032155 ATATCGGCCT
Statistics
Matches: 66, Mismatches: 5, Indels: 10
0.81 0.06 0.12
Matches are distributed among these distances:
45 4 0.06
46 13 0.20
47 26 0.39
48 23 0.35
ACGTcount: A:0.29, C:0.16, G:0.31, T:0.24
Consensus pattern (44 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGATGA
Found at i:83032176 original size:14 final size:14
Alignment explanation
Indices: 83032157--83032184 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
83032147 TGGGACATAT
83032157 ATCGGCCTCGAGAC
1 ATCGGCCTCGAGAC
83032171 ATCGGCCTCGAGAC
1 ATCGGCCTCGAGAC
83032185 GTAAGCAAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.36, G:0.29, T:0.14
Consensus pattern (14 bp):
ATCGGCCTCGAGAC
Found at i:83037456 original size:40 final size:40
Alignment explanation
Indices: 83037239--83037456 Score: 298
Period size: 40 Copynumber: 5.5 Consensus size: 40
83037229 AAGCTAGGTA
* * * *
83037239 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
83037278 CCTTCGGGACATAGCCCGAATGTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
83037318 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
83037358 CCTTCGGGACTTAACCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
83037398 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
83037438 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
83037457 TTATCATTTG
Statistics
Matches: 161, Mismatches: 15, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
39 13 0.08
40 148 0.92
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:83041507 original size:50 final size:50
Alignment explanation
Indices: 83041441--83041540 Score: 191
Period size: 50 Copynumber: 2.0 Consensus size: 50
83041431 ATCGAGAGAG
*
83041441 TAGGACCAGTCGCCTATCAATTGGCTTTACCACCAGACTTAGAGAAGATT
1 TAGGACCAGTCACCTATCAATTGGCTTTACCACCAGACTTAGAGAAGATT
83041491 TAGGACCAGTCACCTATCAATTGGCTTTACCACCAGACTTAGAGAAGATT
1 TAGGACCAGTCACCTATCAATTGGCTTTACCACCAGACTTAGAGAAGATT
83041541 AATGACGTGT
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (50 bp):
TAGGACCAGTCACCTATCAATTGGCTTTACCACCAGACTTAGAGAAGATT
Found at i:83043121 original size:47 final size:46
Alignment explanation
Indices: 83043048--83043313 Score: 220
Period size: 46 Copynumber: 5.7 Consensus size: 46
83043038 ATTTGTTTGT
* * * *
83043048 GAGCTAGTGTAAGACATGTCTGGGACATGCATTAGCCAC-ATTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACGA-GACGA
*
83043094 GAGCCAGTGTAAGACCATGTCTGGGACATGCATCAG-CATTGAGACGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACATGCATCAGCCA-CGAGACGA
* * * * *
83043141 GAGCTAGTGTAAGACATGTTTAGGACATGCATCGGCCTCGAGACGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACGAGACG-A
** *
83043188 -AGCCAGTGTAAGACATGTCTGGGACATGCATCA-ATACGAGATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACGAGACGA
* * * * ** *
83043232 TAGTCAGTGTAAGACCATGTCTGGGATATGGCATC-GACTTGAGA-TA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCACGAGACGA
*
83043278 TGAGCCAGTGTAAGACCATGTCTAGGACATGACATC
1 -GAGCCAGTGTAAGA-CATGTCTGGGACATG-CATC
83043314 GGTACCTTAC
Statistics
Matches: 180, Mismatches: 29, Indels: 21
0.78 0.13 0.09
Matches are distributed among these distances:
44 1 0.01
45 18 0.10
46 83 0.46
47 77 0.43
48 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACGAGACGA
Found at i:83047188 original size:48 final size:48
Alignment explanation
Indices: 83047136--83047501 Score: 353
Period size: 48 Copynumber: 7.6 Consensus size: 48
83047126 TATGTGTGCC
* *
83047136 AGTGTAAGACCATGTCTAGGACATGACATCAGCCACGATATGAGATCT
1 AGTGTAAGACCATGTCTAGGACATGGCATCAGCCACGATATGAGAGCT
* * * *** * *
83047184 AGTGTAAGAACATGTCTGGGACATGGCATCGGCGTTGATATGTGTGCT
1 AGTGTAAGACCATGTCTAGGACATGGCATCAGCCACGATATGAGAGCT
* *
83047232 AGTGTAAGACCATGTCTAGGACATGGCATCAGCCA-TATCATGAGAGCC
1 AGTGTAAGACCATGTCTAGGACATGGCATCAGCCACGAT-ATGAGAGCT
* * *** * *
83047280 AGTGTAAGACCATGTCTAGGACATGTCATCGGCTTTGATATGTGCA-TT
1 AGTGTAAGACCATGTCTAGGACATGGCATCAGCCACGATATGAG-AGCT
*
83047328 AGTGTAAGACCATGTCTAGGACATGGCATCAACCAC-ATCATGAGAGCT
1 AGTGTAAGACCATGTCTAGGACATGGCATCAGCCACGAT-ATGAGAGCT
* * * * * * * *
83047376 AGTGTAAGACCGTGTCTGGGACATGGCATCGGCAATGAGACGAAAGCT
1 AGTGTAAGACCATGTCTAGGACATGGCATCAGCCACGATATGAGAGCT
* * * * * *
83047424 AGTGTAAGACTATGTCTGGGACATGGCATCAGCCTCGACATGTGAGCC
1 AGTGTAAGACCATGTCTAGGACATGGCATCAGCCACGATATGAGAGCT
*
83047472 AGTGTAAGACCATGT-TTGGAACATGGCATC
1 AGTGTAAGACCATGTCTAGG-ACATGGCATC
83047502 GACAATACAC
Statistics
Matches: 254, Mismatches: 57, Indels: 14
0.78 0.18 0.04
Matches are distributed among these distances:
47 8 0.03
48 242 0.95
49 4 0.02
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTAGGACATGGCATCAGCCACGATATGAGAGCT
Found at i:83047287 original size:96 final size:96
Alignment explanation
Indices: 83047123--83047502 Score: 460
Period size: 96 Copynumber: 4.0 Consensus size: 96
83047113 GACATTTGGG
* * * * *
83047123 TGATATGTGTGCCAGTGTAAGACCATGTCTAGGACATGACATCAGCCACGAT-ATGAGATCTAGT
1 TGATATGTGTGCTAGTGTAAGACCATGTCTAGGACATGGCATCAGCCA-TATCATGAGAGCCAGT
* *
83047187 GTAAGAACATGTCTGGGACATGGCATCGGCGT
65 GTAAGACCATGTCTGGGACATGGCATCGGCAT
83047219 TGATATGTGTGCTAGTGTAAGACCATGTCTAGGACATGGCATCAGCCATATCATGAGAGCCAGTG
1 TGATATGTGTGCTAGTGTAAGACCATGTCTAGGACATGGCATCAGCCATATCATGAGAGCCAGTG
* * *
83047284 TAAGACCATGTCTAGGACATGTCATCGGCTT
66 TAAGACCATGTCTGGGACATGGCATCGGCAT
*** * * *
83047315 TGATATGTGCATTAGTGTAAGACCATGTCTAGGACATGGCATCAACCACATCATGAGAGCTAGTG
1 TGATATGTGTGCTAGTGTAAGACCATGTCTAGGACATGGCATCAGCCATATCATGAGAGCCAGTG
* *
83047380 TAAGACCGTGTCTGGGACATGGCATCGGCAA
66 TAAGACCATGTCTGGGACATGGCATCGGCAT
* * *** * * *
83047411 TGAGACGAAAGCTAGTGTAAGACTATGTCTGGGACATGGCATCAGCC-TCGA-CATGTGAGCCAG
1 TGATATGTGTGCTAGTGTAAGACCATGTCTAGGACATGGCATCAGCCAT--ATCATGAGAGCCAG
* *
83047474 TGTAAGACCATGTTTGGAACATGGCATCG
64 TGTAAGACCATGTCTGGGACATGGCATCG
83047503 ACAATACACC
Statistics
Matches: 245, Mismatches: 36, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
95 2 0.01
96 242 0.99
97 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (96 bp):
TGATATGTGTGCTAGTGTAAGACCATGTCTAGGACATGGCATCAGCCATATCATGAGAGCCAGTG
TAAGACCATGTCTGGGACATGGCATCGGCAT
Found at i:83047398 original size:144 final size:143
Alignment explanation
Indices: 83047133--83047501 Score: 393
Period size: 144 Copynumber: 2.6 Consensus size: 143
83047123 TGATATGTGT
* * *
83047133 GCCAGTGTAAGACCATGTCTAGGACATGACATCAGCCACGATATGAGATCTAGTGTAAGAACATG
1 GCCAGTGTAAGACCATGTCTAGGACATGACATCAGCCTCGATATGTGAT-TAGTGTAAGACCATG
* ** *** * *
83047198 TCTGGGACATGGCATCGGCGTTGATATGTGTGCTAGTGTAAGACCATGTCTAGGACATGGCATCA
65 TCTAGGACATGGCATCAACGCACATATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCA
* * *
83047263 GCCAT-ATCATGAGA
130 GCAATGA-CACGAAA
* * * *
83047277 GCCAGTGTAAGACCATGTCTAGGACATGTCATCGGCTTTGATATGTGCATTAGTGTAAGACCATG
1 GCCAGTGTAAGACCATGTCTAGGACATGACATCAGCCTCGATATGTG-ATTAGTGTAAGACCATG
* *
83047342 TCTAGGACATGGCATCAAC-CACATCATGAGAGCTAGTGTAAGACCGTGTCTGGGACATGGCATC
65 TCTAGGACATGGCATCAACGCACAT-ATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATC
* *
83047406 GGCAATGAGACGAAA
129 AGCAATGACACGAAA
* * * * * **
83047421 GCTAGTGTAAGACTATGTCTGGGACATGGCATCAGCCTCGACATGTGAGCCAGTGTAAGACCATG
1 GCCAGTGTAAGACCATGTCTAGGACATGACATCAGCCTCGATATGTGA-TTAGTGTAAGACCATG
*
83047486 T-TTGGAACATGGCATC
65 TCTAGG-ACATGGCATC
83047502 GACAATACAC
Statistics
Matches: 187, Mismatches: 33, Indels: 10
0.81 0.14 0.04
Matches are distributed among these distances:
143 6 0.03
144 178 0.95
145 3 0.02
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.24
Consensus pattern (143 bp):
GCCAGTGTAAGACCATGTCTAGGACATGACATCAGCCTCGATATGTGATTAGTGTAAGACCATGT
CTAGGACATGGCATCAACGCACATATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCAG
CAATGACACGAAA
Found at i:83051328 original size:180 final size:179
Alignment explanation
Indices: 83050991--83051356 Score: 513
Period size: 180 Copynumber: 2.0 Consensus size: 179
83050981 TAGCTGGAGC
* * ** *
83050991 TACGAAACTCCAAATTAAGATCCGTTAATTTTTCCAAAAACTAGACTCACATATATTCTTACAAA
1 TACGAGACTCCAAATTAAGAACCACTAATTTTCCCAAAAACTAGACTCACATATATTCTTACAAA
* * * * *
83051056 AAAATTTAGAATTTTTTGGTTTAGCCAATTTGTACATTTTATTCATTAAAGTTACCCCTATTTCA
66 AAAATTTAGAATTTTTTGGTTCAGCCAATTAGTACAGTTTATTCATTAAAGATACCACTATTTCA
* *
83051121 CTATCTAACAGTTCTGACATCTCTTCACTTAAAATTATTTATCTCATGG
131 CTATCTAACAGTTCCGACATCTCTTCACTAAAAATTATTTATCTCATGG
*
83051170 TACGAGACTCCAAATTAAGAACCACTAATTTTCCCAGAAACTAGACTCACATATATTCTTATCAT
1 TACGAGACTCCAAATTAAGAACCACTAATTTTCCCAAAAACTAGACTCACATATATTCTTA-CA-
*
83051235 AAAATATTTAGAA-TTTTTGGTTCAGCCAATTAGTACAGTTTATTCATTAAAGATACCACTATTT
64 AAAAAATTTAGAATTTTTTGGTTCAGCCAATTAGTACAGTTTATTCATTAAAGATACCACTATTT
* * * * *
83051299 CACTGTCTGATAGTTCCGATC-TTTCTTCACTAAAAATTATTTATGTCATGG
129 CACTATCTAACAGTTCCGA-CATCTCTTCACTAAAAATTATTTATCTCATGG
83051350 TAC-AGAC
1 TACGAGAC
83051357 CTCGGATGTT
Statistics
Matches: 165, Mismatches: 19, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
179 59 0.36
180 93 0.56
181 13 0.08
ACGTcount: A:0.34, C:0.19, G:0.09, T:0.37
Consensus pattern (179 bp):
TACGAGACTCCAAATTAAGAACCACTAATTTTCCCAAAAACTAGACTCACATATATTCTTACAAA
AAAATTTAGAATTTTTTGGTTCAGCCAATTAGTACAGTTTATTCATTAAAGATACCACTATTTCA
CTATCTAACAGTTCCGACATCTCTTCACTAAAAATTATTTATCTCATGG
Found at i:83052100 original size:101 final size:100
Alignment explanation
Indices: 83051924--83052310 Score: 267
Period size: 101 Copynumber: 3.9 Consensus size: 100
83051914 CTGGTATGAA
* * * * * *
83051924 TAGTAGCCTGCACTTAGTACTACACATGGGACCTATCAATCTGGTACACGTAGTAGCCTACACTT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATCAATCGGGTACACATAATAGCCTACACTT
* * * *
83051989 AGTACAACACACGTGACTTATCCATCTAATACACG
66 AGTACAACACACGCGACCTATCAATCCAATACACG
* * * *
83052024 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTAA-CGGGTACGCATAATAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TCAATCGGGTACACATAATAGCCTACAC
* * * **
83052088 TTAGTACTACACATGCGGCCTATCAATCCGGTACACG
64 TTAGTACAACACACGCGACCTATCAATCCAATACACG
* * ** * ** * ***
83052125 TAGTAGCCTGCACTTAGTGCTACACACGTGACCTAA-CCATTTGATACACGGAGTAGCCTGTGCT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATCAATCGGGTACACATAATAGCCTACACT
* ** ** * * * * *
83052189 TAGTACTACACACATGATCGAAACTATCGAGTACACA
65 TAGTACAACACACGCGA-CCTATCAATCCAATACACG
* * * * * *
83052226 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAA-CAATCTGGTACACGTAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATCAATCGGGTACACATAATAGCCTACACT
* * *
83052290 TAGTACTACACATGTGACCTA
65 TAGTACAACACACGCGACCTA
83052311 AAAATGTCTT
Statistics
Matches: 226, Mismatches: 56, Indels: 10
0.77 0.19 0.03
Matches are distributed among these distances:
99 1 0.00
100 60 0.27
101 162 0.72
102 3 0.01
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (100 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATCAATCGGGTACACATAATAGCCTACACTT
AGTACAACACACGCGACCTATCAATCCAATACACG
Found at i:83052201 original size:151 final size:151
Alignment explanation
Indices: 83051927--83052311 Score: 565
Period size: 151 Copynumber: 2.5 Consensus size: 151
83051917 GTATGAATAG
*
83051927 TAGCCTGCACTTAGTACTACACATG-GGACCTATCAATCTGGTACACGTAGTAGCCTACACTTAG
1 TAGCCTGCACTTAGTACTACACATGCGG-CCTATCAATCTGGTACACGTAGTAGCCTGCACTTAG
* * * * *
83051991 TACAACACACGTGACTTATCCATCTAATACACGTAGTAGCCTGCACTTAGTACTACACACGTGAT
65 TACTACACACGTGACCTAACCATCTAATACACGGAGTAGCCTGCACTTAGTACTACACACATGAT
** * *
83052056 CGAAGTTAACGGGTACGCATAA
130 CGAAACTAACGAGTACACATAA
*
83052078 TAGCCTGCACTTAGTACTACACATGCGGCCTATCAATCCGGTACACGTAGTAGCCTGCACTTAGT
1 TAGCCTGCACTTAGTACTACACATGCGGCCTATCAATCTGGTACACGTAGTAGCCTGCACTTAGT
* * * **
83052143 GCTACACACGTGACCTAACCATTTGATACACGGAGTAGCCTGTGCTTAGTACTACACACATGATC
66 ACTACACACGTGACCTAACCATCTAATACACGGAGTAGCCTGCACTTAGTACTACACACATGATC
* *
83052208 GAAACTATCGAGTACACATAG
131 GAAACTAACGAGTACACATAA
* *
83052229 TAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACACGTAGTAGCCTGCACTTAGT
1 TAGCCTGCACTTAGTACTACACATGCGGCCTATCAATCTGGTACACGTAGTAGCCTGCACTTAGT
*
83052294 ACTACACATGTGACCTAA
66 ACTACACACGTGACCTAA
83052312 AAATGTCTTA
Statistics
Matches: 210, Mismatches: 23, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
151 208 0.99
152 2 0.01
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (151 bp):
TAGCCTGCACTTAGTACTACACATGCGGCCTATCAATCTGGTACACGTAGTAGCCTGCACTTAGT
ACTACACACGTGACCTAACCATCTAATACACGGAGTAGCCTGCACTTAGTACTACACACATGATC
GAAACTAACGAGTACACATAA
Found at i:83052311 original size:50 final size:50
Alignment explanation
Indices: 83051924--83052357 Score: 404
Period size: 50 Copynumber: 8.6 Consensus size: 50
83051914 CTGGTATGAA
* *
83051924 TAGTAGCCTGCACTTAGTACTACACATGGGACCTATCAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGGTACACG
* * * * * * **
83051974 TAGTAGCCTACACTTAGTACAACACACGTGACTTATCCATCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGGTACACG
* * * * * * *
83052024 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTAA-CGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAA--CAATCTGGTACACG
* * * * *
83052075 TAATAGCCTGCACTTAGTACTACACATGCGGCCTATCAATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGGTACACG
* * * * *
83052125 TAGTAGCCTGCACTTAGTGCTACACACGTGACCTAACCATTTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGGTACACG
* ** ** ** * *
83052175 GAGTAGCCTGTGCTTAGTACTACACACATGATCGAAACTATC-GAGTACACA
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-CCTAACAATCTG-GTACACG
*
83052226 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGGTACACG
* *** *
83052276 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAAAAATGTCTTAAACACA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA--TCTGGTACACG
* *
83052328 TAGTAGCCTGCACATGGTACTACACATGTG
1 TAGTAGCCTGCACTTAGTACTACACATGTG
83052358 TTCTCACAAT
Statistics
Matches: 305, Mismatches: 71, Indels: 14
0.78 0.18 0.04
Matches are distributed among these distances:
49 2 0.01
50 196 0.64
51 71 0.23
52 36 0.12
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGGTACACG
Found at i:83052353 original size:151 final size:150
Alignment explanation
Indices: 83051923--83052355 Score: 557
Period size: 151 Copynumber: 2.9 Consensus size: 150
83051913 TCTGGTATGA
* *
83051923 ATAGTAGCCTGCACTTAGTACTACACATGGGACCTATCAATCTGGTACACGTAGTAGCCTACACT
1 ATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACT
* * *
83051988 TAGTACAACACACGTGACTTATCCA-TC-TAATACACGTAGTAGCCTGCACTTAGTACTACACAC
66 TAGTACTACACACGTGACCTAACCATTCTTAA-ACACGTAGTAGCCTGCACTTAGTACTACACA-
** * *
83052051 GTGATCGAAGTTAACGGGTACGC
129 -TGATCGAAACTAACGAGTACAC
* * *
83052074 ATAATAGCCTGCACTTAGTACTACACATGCGGCCTATCAATCCGGTACACGTAGTAGCCTGCACT
1 ATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACT
* * * * **
83052139 TAGTGCTACACACGTGACCTAACCATT-TGATACACGGAGTAGCCTGTGCTTAGTACTACACACA
66 TAGTACTACACACGTGACCTAACCATTCTTAAACACGTAGTAGCCTGCACTTAGTACT--ACACA
*
83052203 TGATCGAAACTATCGAGTACAC
129 TGATCGAAACTAACGAGTACAC
*
83052225 ATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACACGTAGTAGCCTGCACT
1 ATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACT
* ** * * *
83052290 TAGTACTACACATGTGACCTAAAAATGTCTTAAACACATAGTAGCCTGCACATGGTACTACACAT
66 TAGTACTACACACGTGACCTAACCAT-TCTTAAACACGTAGTAGCCTGCACTTAGTACTACACAT
83052355 G
130 G
83052356 TGTTCTCACA
Statistics
Matches: 241, Mismatches: 35, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
151 211 0.88
152 3 0.01
153 27 0.11
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (150 bp):
ATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACT
TAGTACTACACACGTGACCTAACCATTCTTAAACACGTAGTAGCCTGCACTTAGTACTACACATG
ATCGAAACTAACGAGTACAC
Found at i:83059620 original size:2 final size:2
Alignment explanation
Indices: 83059613--83059642 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
83059603 GCACTTATGA
83059613 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
83059643 GGTATTTTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:83060297 original size:40 final size:40
Alignment explanation
Indices: 83060234--83060414 Score: 260
Period size: 40 Copynumber: 4.6 Consensus size: 40
83060224 ATTCGGATTG
*
83060234 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
*
83060273 ATAACCGGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
*
83060313 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGTGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
* *
83060353 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA-CT
* **
83060393 ATATCC-GGCTAAACCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
83060415 TACTTGGTTT
Statistics
Matches: 130, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
39 29 0.22
40 101 0.78
ACGTcount: A:0.28, C:0.24, G:0.28, T:0.21
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
Found at i:83064365 original size:58 final size:58
Alignment explanation
Indices: 83064247--83064366 Score: 147
Period size: 57 Copynumber: 2.1 Consensus size: 58
83064237 AGTATGAAAA
83064247 AAAAAAGAAAAAAAAATGTGTTCATCCTTCTCCATAGGCTTGGCCGAATGTACTAAGG
1 AAAAAAGAAAAAAAAATGTGTTCATCCTTCTCCATAGGCTTGGCCGAATGTACTAAGG
* * ***
83064305 AAAAAA-AAAGAAAAATTTGTTCATCCTT-TCTCATCTTCTTGGCCGAAAT-TACTAAGG
1 AAAAAAGAAAAAAAAATGTGTTCATCCTTCTC-CATAGGCTTGGCCG-AATGTACTAAGG
*
83064362 GAAAA
1 AAAAA
83064367 GGGGGAGGAT
Statistics
Matches: 54, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
56 2 0.04
57 43 0.80
58 9 0.17
ACGTcount: A:0.41, C:0.17, G:0.16, T:0.27
Consensus pattern (58 bp):
AAAAAAGAAAAAAAAATGTGTTCATCCTTCTCCATAGGCTTGGCCGAATGTACTAAGG
Found at i:83065721 original size:40 final size:40
Alignment explanation
Indices: 83065556--83065722 Score: 162
Period size: 40 Copynumber: 4.2 Consensus size: 40
83065546 AAATTGAATG
* * **
83065556 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTGATT
* * **
83065595 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATT
* *
83065635 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTGATT
** *
83065675 CCATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GTGATT
83065715 ATATCCGG
1 ATATCCGG
83065723 TTATATTCCG
Statistics
Matches: 102, Mismatches: 21, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
39 17 0.17
40 83 0.81
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATT
Found at i:83067328 original size:30 final size:30
Alignment explanation
Indices: 83067273--83067463 Score: 291
Period size: 30 Copynumber: 6.5 Consensus size: 30
83067263 ATAGTGAATC
83067273 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
83067302 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
83067332 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
83067362 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
*
83067392 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AGCT
* * * * *
83067420 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAGCT
83067450 CGCACACTTAGTGC
1 CGCACACTTAGTGC
83067464 CAATCTTGTC
Statistics
Matches: 152, Mismatches: 5, Indels: 9
0.92 0.03 0.05
Matches are distributed among these distances:
27 2 0.01
28 22 0.14
29 19 0.12
30 108 0.71
31 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.34
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:83075566 original size:56 final size:56
Alignment explanation
Indices: 83075469--83075586 Score: 150
Period size: 56 Copynumber: 2.1 Consensus size: 56
83075459 AGTATGAAAA
*
83075469 AAAAAGAAAAAAAAATGTGTTCATCCTTCTCCATAGGCTTGGCCGAATGTACTAAGG
1 AAAAAGAAAAAAAAATGTGTTCATCCTTCTCCATAGGCTTGGCCGAA-ATACTAAGG
* ***
83075526 AAAAA-AAAAAAAAATTTGTTCATCCTT-TCTCATCTTCTTGGCCGAAATACTAAGG
1 AAAAAGAAAAAAAAATGTGTTCATCCTTCTC-CATAGGCTTGGCCGAAATACTAAGG
*
83075581 GAAAAG
1 AAAAAG
83075587 GGGAGGATTT
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
55 14 0.26
56 34 0.64
57 5 0.09
ACGTcount: A:0.41, C:0.17, G:0.16, T:0.26
Consensus pattern (56 bp):
AAAAAGAAAAAAAAATGTGTTCATCCTTCTCCATAGGCTTGGCCGAAATACTAAGG
Found at i:83076837 original size:40 final size:40
Alignment explanation
Indices: 83076771--83076937 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
83076761 AAATTGAATG
* * *
83076771 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
83076810 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
83076850 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
83076890 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
83076930 ATATCCGG
1 ATATCCGG
83076938 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:83086196 original size:40 final size:40
Alignment explanation
Indices: 83086127--83086307 Score: 242
Period size: 40 Copynumber: 4.6 Consensus size: 40
83086117 ATTCGGATTG
*
83086127 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
* *
83086166 ATAACCGGGCCAAGTCCCGAAGGAAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
* *
83086206 ATAACCGGGCTAAGTCCCGAAGTCAATTGTGTGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
* *
83086246 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA-CT
* **
83086286 ATATCC-GGCTAAACCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
83086308 TACTTGGTTT
Statistics
Matches: 126, Mismatches: 14, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
39 29 0.23
40 97 0.77
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.22
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
Found at i:83092811 original size:90 final size:90
Alignment explanation
Indices: 83092658--83092824 Score: 228
Period size: 90 Copynumber: 1.9 Consensus size: 90
83092648 GATGCCAAAG
* ** * * * *
83092658 CCATGTCCCAGACATAGTCTTTCATGGGTCTACATATCGATGCCATATCCTAGATATGGTCTTAT
1 CCATGTCCCAGACATAGTCTTACATGGACCTACACATCGATGCCATATCCCAGACATGGTCTTAC
83092723 ACAAAATCTCATGTCGGTGCCGATT
66 ACAAAATCTCATGTCGGTGCCGATT
* *
83092748 CCATGTCCCAGACATGGTCTTACATGAGACCT-CACATCGATGCCATGTCCCAGACATGGTCTTA
1 CCATGTCCCAGACATAGTCTTACATG-GACCTACACATCGATGCCATATCCCAGACATGGTCTTA
*
83092812 CACGAAATCTCAT
65 CACAAAATCTCAT
83092825 ATCAACGCCA
Statistics
Matches: 66, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
90 63 0.95
91 3 0.05
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.29
Consensus pattern (90 bp):
CCATGTCCCAGACATAGTCTTACATGGACCTACACATCGATGCCATATCCCAGACATGGTCTTAC
ACAAAATCTCATGTCGGTGCCGATT
Found at i:83092861 original size:42 final size:42
Alignment explanation
Indices: 83092748--83092867 Score: 159
Period size: 42 Copynumber: 2.9 Consensus size: 42
83092738 GGTGCCGATT
* * * * *
83092748 CCATGTCCCAGACATGGTCTTACATGAGACCTCACATCGATG
1 CCATGTCCCAGACATGGTCTTACATGAAATCTCATATCAACG
*
83092790 CCATGTCCCAGACATGGTCTTACACGAAATCTCATATCAACG
1 CCATGTCCCAGACATGGTCTTACATGAAATCTCATATCAACG
* * *
83092832 CCATATCCCAGATATGGTCTTACATGAAATCACATA
1 CCATGTCCCAGACATGGTCTTACATGAAATCTCATA
83092868 CCGATGCCGA
Statistics
Matches: 68, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 68 1.00
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (42 bp):
CCATGTCCCAGACATGGTCTTACATGAAATCTCATATCAACG
Found at i:83092887 original size:48 final size:46
Alignment explanation
Indices: 83092695--83092951 Score: 156
Period size: 48 Copynumber: 5.6 Consensus size: 46
83092685 GTCTACATAT
* * * ** * **
83092695 CGATGCCATATCCTAGATATGGTCTTATACAAAATCTCATGTCGGTGC
1 CGATGCCATATCCCAGACATGGTCTTACATGAAATCACA--TCCATGC
* * *
83092743 CGATTCCATGTCCCAGACATGGTCTTACATGAGA-C-C-TCACAT--
1 CGATGCCATATCCCAGACATGGTCTTACATGAAATCACATC-CATGC
* * *
83092785 CGATGCCATGTCCCAGACATGGTCTTACACGAAATCTCAT--AT--
1 CGATGCCATATCCCAGACATGGTCTTACATGAAATCACATCCATGC
* * *
83092827 CAACGCCATATCCCAGATATGGTCTTACATGAAATCACATACCGATGC
1 CGATGCCATATCCCAGACATGGTCTTACATGAAATCACAT-CC-ATGC
* * * * *
83092875 CGATGCCATATCCCAGATATAGTCTTACACTAGCACA-CATATCAATGC
1 CGATGCCATATCCCAGACATGGTCTTACA-T-G-AAATCACATCCATGC
* *
83092923 CGATGCCATGTCCCAGACATGGTTTTACA
1 CGATGCCATATCCCAGACATGGTCTTACA
83092952 CTAGCTATCA
Statistics
Matches: 167, Mismatches: 29, Indels: 26
0.75 0.13 0.12
Matches are distributed among these distances:
42 67 0.40
43 3 0.02
44 2 0.01
45 1 0.01
46 3 0.02
47 1 0.01
48 81 0.49
49 2 0.01
50 5 0.03
51 2 0.01
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.26
Consensus pattern (46 bp):
CGATGCCATATCCCAGACATGGTCTTACATGAAATCACATCCATGC
Found at i:83092900 original size:132 final size:137
Alignment explanation
Indices: 83092657--83092952 Score: 320
Period size: 132 Copynumber: 2.2 Consensus size: 137
83092647 GGATGCCAAA
* * * ** * * *
83092657 GCCATGTCCCAGACATAGTCTTTCATGGGTCTACATATCGATGCCATATCCTAGATATGGTCTTA
1 GCCATGTCCCAGACATGGTCTTACACGAATCTACATATCAACGCCATATCCCAGATATGGTCTTA
* * ** * * * *
83092722 TACAAAATCTCATGTCGGTGCCGATTCCATGTCCCAGACATGGTCTTACA-TGAG-AC-C---TC
66 CACAAAATCACATACCGATGCCGATGCCATATCCCAGACATAGTCTTACACT-AGCACACATATC
83092781 ACAT-CGAT
130 A-ATCCGAT
83092789 GCCATGTCCCAGACATGGTCTTACACGAAATCT-CATATCAACGCCATATCCCAGATATGGTCTT
1 GCCATGTCCCAGACATGGTCTTACACG-AATCTACATATCAACGCCATATCCCAGATATGGTCTT
** *
83092853 ACATGAAATCACATACCGATGCCGATGCCATATCCCAGATATAGTCTTACACTAGCACACATATC
65 ACACAAAATCACATACCGATGCCGATGCCATATCCCAGACATAGTCTTACACTAGCACACATATC
83092918 AATGCCGAT
130 AAT-CCGAT
*
83092927 GCCATGTCCCAGACATGGTTTTACAC
1 GCCATGTCCCAGACATGGTCTTACAC
83092953 TAGCTATCAT
Statistics
Matches: 135, Mismatches: 20, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
132 94 0.70
133 6 0.04
134 1 0.01
136 2 0.01
137 3 0.02
138 29 0.21
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (137 bp):
GCCATGTCCCAGACATGGTCTTACACGAATCTACATATCAACGCCATATCCCAGATATGGTCTTA
CACAAAATCACATACCGATGCCGATGCCATATCCCAGACATAGTCTTACACTAGCACACATATCA
ATCCGAT
Found at i:83092952 original size:48 final size:49
Alignment explanation
Indices: 83092831--83093000 Score: 186
Period size: 48 Copynumber: 3.5 Consensus size: 49
83092821 TCATATCAAC
* ** * *
83092831 GCCATATCCCAGATATGGTCTTACA-T-GAAATCACATACCGATGCCGAT
1 GCCATGTCCCAGATATGGTCTTACACTAGCTA-CACATATCAATGCCGAT
* *
83092879 GCCATATCCCAGATATAGTCTTACACTAGC-ACACATATCAATGCCGAT
1 GCCATGTCCCAGATATGGTCTTACACTAGCTACACATATCAATGCCGAT
* * * **
83092927 GCCATGTCCCAGACATGGTTTTACACTAGCTA-TCATATCAACCCCGAT
1 GCCATGTCCCAGATATGGTCTTACACTAGCTACACATATCAATGCCGAT
*
83092975 GCCATGTCCTAGATATGGTCTTACAC
1 GCCATGTCCCAGATATGGTCTTACAC
83093001 AGGCTATCAT
Statistics
Matches: 105, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
48 101 0.96
49 3 0.03
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.26
Consensus pattern (49 bp):
GCCATGTCCCAGATATGGTCTTACACTAGCTACACATATCAATGCCGAT
Found at i:83093120 original size:22 final size:22
Alignment explanation
Indices: 83093095--83093139 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
83093085 CACTAATTTT
83093095 TCAGTAAATCGTCACAAGCCAA
1 TCAGTAAATCGTCACAAGCCAA
83093117 TCAGTAAATCGTCACAAGCCAA
1 TCAGTAAATCGTCACAAGCCAA
83093139 T
1 T
83093140 TTTATTAGGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.40, C:0.27, G:0.13, T:0.20
Consensus pattern (22 bp):
TCAGTAAATCGTCACAAGCCAA
Found at i:83099732 original size:93 final size:93
Alignment explanation
Indices: 83099621--83099791 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
83099611 GCCCCTAAGT
* * *
83099621 GAACTCAGAATCAACTCAACGAGCTCGGGCGTTCACATCCATAAGTGAACTTGGACTCAACTCAA
1 GAACTCAGAATCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
83099686 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* * * *
83099714 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGAATCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
83099779 CGAGTTCGGATGC
66 CGAGTTCGGATGC
83099792 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCAGAATCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:83099788 original size:46 final size:46
Alignment explanation
Indices: 83099616--83099788 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
83099606 AACCCGCCCC
* * * * *
83099616 TAAGTGAACTCAGAATCAACTCAACGAGCTCGGGCGTTCACATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCA
* *
83099662 TAAGTGAACTTGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCACATCCA
* * *
83099710 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCA
83099755 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
83099789 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 14, Indels: 18
0.76 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 58 0.56
47 28 0.27
48 2 0.02
49 1 0.01
50 4 0.04
51 2 0.02
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCA
Found at i:83103559 original size:29 final size:29
Alignment explanation
Indices: 83103526--83103583 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
83103516 TAGAAGTTGA
83103526 GATAGAATTAGCAACTAACTTCGAGCTAC
1 GATAGAATTAGCAACTAACTTCGAGCTAC
83103555 GATAGAATTAGCAACTAACTTCGAGCTAC
1 GATAGAATTAGCAACTAACTTCGAGCTAC
83103584 AACTGATTCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.38, C:0.21, G:0.17, T:0.24
Consensus pattern (29 bp):
GATAGAATTAGCAACTAACTTCGAGCTAC
Found at i:83109503 original size:40 final size:40
Alignment explanation
Indices: 83109448--83109665 Score: 242
Period size: 40 Copynumber: 5.5 Consensus size: 40
83109438 AGTTTAAATA
* *
83109448 GGGCACGTTTGTGCATTCAGGGGTACTGAAGTACAAACAG
1 GGGCACGTATGTGCATTCAGGGGTACCGAAGTACAAACAG
* * * * *
83109488 GGGCATGTATGTGCATTTAGGGGTACTGAA-TTCAAATAG
1 GGGCACGTATGTGCATTCAGGGGTACCGAAGTACAAACAG
* * * **
83109527 GGGCACATATGTGTATTCAAGGGTACCGAAGTGTAAACAAG
1 GGGCACGTATGTGCATTCAGGGGTACCGAAGTACAAAC-AG
* ** *
83109568 GGG-ACGCATGTGCATTCAGGGGTACAAAAGTACAAATAG
1 GGGCACGTATGTGCATTCAGGGGTACCGAAGTACAAACAG
* *
83109607 GGGCACGTATGTACATTCAGGGGTACCGAAGTACAAACAT
1 GGGCACGTATGTGCATTCAGGGGTACCGAAGTACAAACAG
*
83109647 GGGCACGTATGTGCGTTCA
1 GGGCACGTATGTGCATTCA
83109666 TACAATAATT
Statistics
Matches: 144, Mismatches: 31, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
39 36 0.25
40 103 0.72
41 5 0.03
ACGTcount: A:0.30, C:0.16, G:0.31, T:0.23
Consensus pattern (40 bp):
GGGCACGTATGTGCATTCAGGGGTACCGAAGTACAAACAG
Found at i:83116913 original size:17 final size:17
Alignment explanation
Indices: 83116891--83116939 Score: 52
Period size: 17 Copynumber: 3.1 Consensus size: 17
83116881 CATACTATTC
83116891 TCATACATTCAATCATT
1 TCATACATTCAATCATT
*
83116908 TCATACAATC-ATCA-T
1 TCATACATTCAATCATT
83116923 TCA-A-ATTCAATCTATT
1 TCATACATTCAATC-ATT
83116939 T
1 T
83116940 ATCCCTTATA
Statistics
Matches: 27, Mismatches: 2, Indels: 7
0.75 0.06 0.19
Matches are distributed among these distances:
13 3 0.11
14 4 0.15
15 5 0.19
16 6 0.22
17 9 0.33
ACGTcount: A:0.37, C:0.22, G:0.00, T:0.41
Consensus pattern (17 bp):
TCATACATTCAATCATT
Found at i:83127706 original size:8 final size:8
Alignment explanation
Indices: 83127693--83127725 Score: 50
Period size: 8 Copynumber: 4.2 Consensus size: 8
83127683 TTAGAAATAT
83127693 TTATTTTA
1 TTATTTTA
83127701 TTATTTTA
1 TTATTTTA
83127709 TTATTTTA
1 TTATTTTA
*
83127717 AT-TTTTA
1 TTATTTTA
83127724 TT
1 TT
83127726 CAAACTACTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
7 6 0.26
8 17 0.74
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TTATTTTA
Found at i:83130153 original size:19 final size:20
Alignment explanation
Indices: 83130129--83130173 Score: 83
Period size: 19 Copynumber: 2.3 Consensus size: 20
83130119 AAACCTAAGA
83130129 TGAATCTTGTTATTA-TTTT
1 TGAATCTTGTTATTATTTTT
83130148 TGAATCTTGTTATTATTTTT
1 TGAATCTTGTTATTATTTTT
83130168 TGAATC
1 TGAATC
83130174 GTATGACAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 15 0.60
20 10 0.40
ACGTcount: A:0.22, C:0.07, G:0.11, T:0.60
Consensus pattern (20 bp):
TGAATCTTGTTATTATTTTT
Found at i:83132308 original size:29 final size:29
Alignment explanation
Indices: 83132276--83132348 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
83132266 CTTCGAGCTC
*
83132276 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
83132305 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
83132334 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
83132349 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:83151751 original size:20 final size:20
Alignment explanation
Indices: 83151723--83151766 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
83151713 TACCAACTTG
*
83151723 CAACTTACCATAATCTTTCA
1 CAACATACCATAATCTTTCA
*
83151743 CAACATACCATAGTCTTTCA
1 CAACATACCATAATCTTTCA
83151763 CAAC
1 CAAC
83151767 TTAAACATTG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.32, G:0.02, T:0.30
Consensus pattern (20 bp):
CAACATACCATAATCTTTCA
Found at i:83151941 original size:42 final size:43
Alignment explanation
Indices: 83151862--83151952 Score: 130
Period size: 42 Copynumber: 2.1 Consensus size: 43
83151852 ATTACATGGG
* * *
83151862 ATCTCATATCGATGCCAATAGCCCAGTTATGGTCTTACGCGAA
1 ATCTCATATCAATGCCAATAGCCCAGATATGGTCTTACACGAA
* *
83151905 ATCTCATATCAATGCC-ATATCCCAGATATGGTCTTACACGTA
1 ATCTCATATCAATGCCAATAGCCCAGATATGGTCTTACACGAA
83151947 ATCTCA
1 ATCTCA
83151953 ACTAACCCTA
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
42 28 0.65
43 15 0.35
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.30
Consensus pattern (43 bp):
ATCTCATATCAATGCCAATAGCCCAGATATGGTCTTACACGAA
Found at i:83155218 original size:43 final size:39
Alignment explanation
Indices: 83155113--83155261 Score: 104
Period size: 41 Copynumber: 3.6 Consensus size: 39
83155103 TAATTCACTA
83155113 GCATAAAGCCTGCTAGGCAT-AAGCCTGAATTACACACCG
1 GCAT-AAGCCTGCTAGGCATAAAGCCTGAATTACACACCG
* * * * * *
83155152 GCTTAAGGCCTGCTAGACTTAAAGTCTGATTTTATATTCACCG
1 GCATAA-GCCTGCTAGGCATAAAGCCTGA-ATTACA--CACCG
* *
83155195 GCAATAAGCCTGCTAGGCATAAAGCCCG-ATTACATTCACCA
1 GC-ATAAGCCTGCTAGGCATAAAGCCTGAATTACA--CACCG
* * *
83155236 GCACAATGCTTGCTAGGCTTAAAGCC
1 GCATAA-GCCTGCTAGGCATAAAGCC
83155262 CTAATATCAC
Statistics
Matches: 86, Mismatches: 17, Indels: 12
0.75 0.15 0.10
Matches are distributed among these distances:
38 2 0.02
39 14 0.16
40 10 0.12
41 33 0.38
43 24 0.28
44 3 0.03
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.24
Consensus pattern (39 bp):
GCATAAGCCTGCTAGGCATAAAGCCTGAATTACACACCG
Found at i:83168760 original size:23 final size:23
Alignment explanation
Indices: 83168728--83168774 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
83168718 TAAACCATAT
83168728 TTACACAACTCAAAAGTAACAAA
1 TTACACAACTCAAAAGTAACAAA
*
83168751 TTACATAACTCAAAAGTAACAAA
1 TTACACAACTCAAAAGTAACAAA
83168774 T
1 T
83168775 AGATGTCCGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.55, C:0.19, G:0.04, T:0.21
Consensus pattern (23 bp):
TTACACAACTCAAAAGTAACAAA
Found at i:83173342 original size:40 final size:40
Alignment explanation
Indices: 83173214--83173344 Score: 147
Period size: 40 Copynumber: 3.3 Consensus size: 40
83173204 TATGCTGGAA
* * * *
83173214 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTACTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
83173254 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
83173294 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
83173334 ATTATATCCGG
1 ATTATATCCGG
83173345 TTATATTCCG
Statistics
Matches: 72, Mismatches: 18, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:83174959 original size:20 final size:20
Alignment explanation
Indices: 83174934--83174989 Score: 94
Period size: 20 Copynumber: 2.8 Consensus size: 20
83174924 ATCAAAATCC
83174934 ATCATACATATCATGTGCAT
1 ATCATACATATCATGTGCAT
*
83174954 ATCATACATGTCATGTGCAT
1 ATCATACATATCATGTGCAT
*
83174974 ATCATACATACCATGT
1 ATCATACATATCATGT
83174990 TTATCAAAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.34, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATACATATCATGTGCAT
Found at i:83182164 original size:31 final size:31
Alignment explanation
Indices: 83182126--83182189 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
83182116 CCTTTTCATA
83182126 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
83182157 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
83182188 TT
1 TT
83182190 ACTGTAAACG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:83182466 original size:22 final size:23
Alignment explanation
Indices: 83182403--83182517 Score: 184
Period size: 22 Copynumber: 5.1 Consensus size: 23
83182393 CCTAGCCTCT
*
83182403 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
83182426 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
83182450 TTTAATAACT-GGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
83182472 TTTAATAACTGGGGCAT-AGCCC
1 TTTAATAACTGGGGCATAAGCCC
83182494 TTTAATAACT-GGGCAT-AGCCC
1 TTTAATAACTGGGGCATAAGCCC
83182515 TTT
1 TTT
83182518 TACACTTCCT
Statistics
Matches: 89, Mismatches: 1, Indels: 5
0.94 0.01 0.05
Matches are distributed among these distances:
21 14 0.16
22 37 0.42
23 16 0.18
24 22 0.25
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.29
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:83182519 original size:22 final size:22
Alignment explanation
Indices: 83182382--83182517 Score: 177
Period size: 22 Copynumber: 6.0 Consensus size: 22
83182372 GCTTTATCAT
*
83182382 ATAACTGGAGGCCTAGCCTCTTTTA
1 ATAACTGG-GGCATAGCC-C-TTTA
*
83182407 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGC-ATAGCCC-TTTA
83182431 ATAACTGGGGCATAAGCCCTTTA
1 ATAACTGGGGCAT-AGCCCTTTA
83182454 ATAACT-GGGCATAAGCCCTTTA
1 ATAACTGGGGCAT-AGCCCTTTA
83182476 ATAACTGGGGCATAGCCCTTTA
1 ATAACTGGGGCATAGCCCTTTA
83182498 ATAACT-GGGCATAGCCCTTT
1 ATAACTGGGGCATAGCCCTTT
83182518 TACACTTCCT
Statistics
Matches: 105, Mismatches: 3, Indels: 10
0.89 0.03 0.08
Matches are distributed among these distances:
21 14 0.13
22 37 0.35
23 17 0.16
24 25 0.24
25 12 0.11
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.28
Consensus pattern (22 bp):
ATAACTGGGGCATAGCCCTTTA
Found at i:83182593 original size:20 final size:20
Alignment explanation
Indices: 83182568--83182634 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
83182558 TTGTGATTAC
83182568 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
83182588 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
83182608 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
83182628 ACCATGT
1 ATCATGT
83182635 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:83182599 original size:11 final size:11
Alignment explanation
Indices: 83182568--83182623 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
83182558 TTGTGATTAC
83182568 ATCATGTGCAT
1 ATCATGTGCAT
*
83182579 ATCA--TACAT
1 ATCATGTGCAT
83182588 ATCATGTGCAT
1 ATCATGTGCAT
*
83182599 ATCA--TACAT
1 ATCATGTGCAT
*
83182608 GTCATGTGCAT
1 ATCATGTGCAT
83182619 ATCAT
1 ATCAT
83182624 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:83188149 original size:40 final size:40
Alignment explanation
Indices: 83188094--83188310 Score: 287
Period size: 40 Copynumber: 5.5 Consensus size: 40
83188084 GGATGATAAT
* * * *
83188094 CGGGCTAAGTCCCGAAGGCTTTTGCGCTAGTGACTAGT-TC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TATC
83188134 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
*
83188174 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
* *
83188214 CGGGCTAAGTCCCGAAGGCATTTGTGGGAGTTACTACATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
* * *
83188254 CGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATC
* *
83188294 C-GGTTAAATCCCGAAGG
1 CGGGCTAAGTCCCGAAGG
83188311 TACCTGGCTT
Statistics
Matches: 159, Mismatches: 16, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
39 16 0.10
40 143 0.90
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
Found at i:83198161 original size:2 final size:2
Alignment explanation
Indices: 83198154--83198183 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
83198144 ATTTATGCGC
83198154 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
83198184 TCATACATTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:83206227 original size:20 final size:20
Alignment explanation
Indices: 83206202--83206245 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
83206192 GGACACAGGT
* *
83206202 GTGTCCCCAGCCATACGGGC
1 GTGTCCCAAGCCACACGGGC
83206222 GTGTCCCAAGCCACACGGGC
1 GTGTCCCAAGCCACACGGGC
83206242 GTGT
1 GTGT
83206246 GAGACTACGC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.16, C:0.36, G:0.32, T:0.16
Consensus pattern (20 bp):
GTGTCCCAAGCCACACGGGC
Found at i:83209880 original size:51 final size:50
Alignment explanation
Indices: 83209714--83209945 Score: 243
Period size: 49 Copynumber: 4.7 Consensus size: 50
83209704 CTGGTACGCA
* * * **
83209714 TAGTAGCTTGCACTTAGTACTAAACATGCAACC-AATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCGAATTATCCGGTACACG
* * ** * *
83209763 TAGTAGCCTACACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCGAATTATCCGGTACACG
* * * *
83209813 TAGTAGCCTGCACTTAGTTCTACACACGTGATCGAAGTTATCGGGTACACA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCGAA-TTATCCGGTACACG
* * * ** *
83209864 TAGTAGCCTGCCCTTAGTACTACACATGCGACC-AAAAATCCAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCGAATTATCCGGTACACG
*
83209913 TAGTAGCTTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
83209946 TCACAATAGA
Statistics
Matches: 148, Mismatches: 33, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
49 65 0.44
50 46 0.31
51 37 0.25
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCGAATTATCCGGTACACG
Found at i:83209943 original size:100 final size:100
Alignment explanation
Indices: 83209714--83209943 Score: 279
Period size: 101 Copynumber: 2.3 Consensus size: 100
83209704 CTGGTACGCA
* *
83209714 TAGTAGCTTGCACTTAGTACTA-A-ACATGCAACCAATTATCCGGTACACGTAGTAGCCTACACT
1 TAGTAGCTTGCACTTAGTACTACACACGTG-AACCAATTATCCGGTACACATAGTAGCCTACACT
* ** *
83209777 TAGTACTACACACGTGACCTAACCATCTGATACACG
65 TAGTACTACACACGCGACCTAAAAATCAGATACACG
* * * * * * *
83209813 TAGTAGCCTGCACTTAGTTCTACACACGTGATCGAAGTTATCGGGTACACATAGTAGCCTGCCCT
1 TAGTAGCTTGCACTTAGTACTACACACGTGAACCAA-TTATCCGGTACACATAGTAGCCTACACT
*
83209878 TAGTACTACACATGCGACC-AAAAATCCAG-TACACG
65 TAGTACTACACACGCGACCTAAAAAT-CAGATACACG
83209913 TAGTAGCTTGCACTTAGTACTACACACGTGA
1 TAGTAGCTTGCACTTAGTACTACACACGTGA
83209944 CCTCACAATA
Statistics
Matches: 111, Mismatches: 16, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
99 20 0.18
100 44 0.40
101 47 0.42
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (100 bp):
TAGTAGCTTGCACTTAGTACTACACACGTGAACCAATTATCCGGTACACATAGTAGCCTACACTT
AGTACTACACACGCGACCTAAAAATCAGATACACG
Found at i:83219071 original size:29 final size:29
Alignment explanation
Indices: 83219043--83219144 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
83219033 CCTCCGAGCT
** * * *
83219043 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
83219072 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
83219101 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
83219130 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
83219145 GATCTCGTCA
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:83226792 original size:29 final size:29
Alignment explanation
Indices: 83226764--83226865 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
83226754 CCTCCGAGCT
** * * *
83226764 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
83226793 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
83226822 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
83226851 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
83226866 GATCTCGTCA
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:83237950 original size:3 final size:3
Alignment explanation
Indices: 83237940--83238041 Score: 197
Period size: 3 Copynumber: 34.3 Consensus size: 3
83237930 GTAGTTATAG
83237940 TAT T-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
83237987 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
83238035 TAT TAT T
1 TAT TAT T
83238042 TATAGTTTGA
Statistics
Matches: 98, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
2 2 0.02
3 96 0.98
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:83239275 original size:47 final size:48
Alignment explanation
Indices: 83239207--83239517 Score: 228
Period size: 47 Copynumber: 6.6 Consensus size: 48
83239197 TTTTTGTGCT
*
83239207 AGTGTAAGA-CATGTCTAGGACAT-GCATCAGCCACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCACATTATGAGAGCC
* * *
83239253 AGTGTAAGACCATGTTTGGGACATGGCATCAG---CATTGAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCACATT---ATGAGAGCC
* * *
83239301 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGA-GATGTA-AGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCAC-ATTATG-AGAGCC
* * * *
83239347 AGTGTAAGA-CATGTTTGGGACAT-GCATCAGCTACA--A-GATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCACATTATGA-GAGCC
* * * * *
83239391 AATGTAAAACCATGTCTGGGACATGGCATC-GGCACGGATATGTGAGAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCAC--AT-TATGAGAGCC
*
83239441 AGTGTAAGACCATGTCTGGGACATGGCATC-G--GC-TTAATGGATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCACATT-AT-GA-GAGCC
83239488 AGTGTAAGACCATGTCTGGGACATGGCATC
1 AGTGTAAGACCATGTCTGGGACATGGCATC
83239518 GACATTATAC
Statistics
Matches: 215, Mismatches: 27, Indels: 45
0.75 0.09 0.16
Matches are distributed among these distances:
42 1 0.00
43 1 0.00
44 11 0.05
45 23 0.11
46 57 0.27
47 61 0.28
48 24 0.11
49 1 0.00
50 34 0.16
51 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCAGCCACATTATGAGAGCC
Found at i:83239354 original size:46 final size:49
Alignment explanation
Indices: 83239207--83239518 Score: 264
Period size: 46 Copynumber: 6.6 Consensus size: 49
83239197 TTTTTGTGCT
* * * *
83239207 AGTGTAAGA-CATGTCTAGGACAT-GCATCAGCCAC-ATTATG-AGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGA-GATGTAGAGCC
* * * * * *
83239253 AGTGTAAGACCATGTTTGGGACATGGCATCAGCATTGAGACG-AGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGTAGAGCC
83239301 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGTA-AGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGTAGAGCC
* * * *
83239347 AGTGTAAGA-CATGTTTGGGACAT-GCATCAG-CTACAAGATGT---GTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-CGAGATGTAGAGCC
* * * * *
83239391 AATGTAAAACCATGTCTGGGACATGGCATCGGCAC-GGATATGTGAGAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTCGAGATGT-AGAGCC
* *
83239441 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CT-TA-ATGGATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGTA-GAGCC
83239488 AGTGTAAGACCATGTCTGGGACATGGCATCG
1 AGTGTAAGACCATGTCTGGGACATGGCATCG
83239519 ACATTATACC
Statistics
Matches: 221, Mismatches: 30, Indels: 29
0.79 0.11 0.10
Matches are distributed among these distances:
44 9 0.04
45 15 0.07
46 72 0.33
47 64 0.29
48 27 0.12
49 1 0.00
50 33 0.15
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (49 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGTAGAGCC
Found at i:83239518 original size:47 final size:48
Alignment explanation
Indices: 83239248--83239518 Score: 233
Period size: 47 Copynumber: 5.8 Consensus size: 48
83239238 CACATTATGA
* * *
83239248 GAGCCAGTGTAAGACCATGTTTGGGACATGGCATCAGCATTGAGA-CGA-
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-TT-AGATGGAT
* *
83239296 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGAT-G-T
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-CT-TAGATGGAT
* * * * *
83239342 AAGCCAGTGTAAGA-CATGTTTGGGACAT-GCATCAGC-TACA-AGAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTAGATGGAT
* * * * ** *
83239386 GTGTCAATGTAAAACCATGTCTGGGACATGGCATCGGCACGGATATGTGA-
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG--CTTAGATG-GAT
*
83239436 GAGTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTA-ATGGAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTAGATGGAT
83239483 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
83239519 ACATTATACC
Statistics
Matches: 183, Mismatches: 26, Indels: 29
0.77 0.11 0.12
Matches are distributed among these distances:
43 3 0.02
44 10 0.05
45 14 0.08
46 50 0.27
47 52 0.28
48 16 0.09
49 2 0.01
50 34 0.19
51 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.31, T:0.23
Consensus pattern (48 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTAGATGGAT
Found at i:83240636 original size:20 final size:21
Alignment explanation
Indices: 83240597--83240636 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
83240587 GTTATAATGA
83240597 CCACACAGGCGTGTTGCCCTT
1 CCACACAGGCGTGTTGCCCTT
* *
83240618 CCACACGGGGGTG-TGCCCT
1 CCACACAGGCGTGTTGCCCT
83240637 GTTACAAGAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.12, C:0.38, G:0.30, T:0.20
Consensus pattern (21 bp):
CCACACAGGCGTGTTGCCCTT
Found at i:83242415 original size:13 final size:13
Alignment explanation
Indices: 83242397--83242426 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
83242387 GGGAATCGTG
83242397 TCTTTACTTTATT
1 TCTTTACTTTATT
*
83242410 TCTTTATTTTATT
1 TCTTTACTTTATT
83242423 TCTT
1 TCTT
83242427 AGGATATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.13, C:0.13, G:0.00, T:0.73
Consensus pattern (13 bp):
TCTTTACTTTATT
Found at i:83243913 original size:48 final size:48
Alignment explanation
Indices: 83243842--83244308 Score: 434
Period size: 48 Copynumber: 9.7 Consensus size: 48
83243832 CGTAAGCCAA
* * *
83243842 TGTAAGACCATGTTTGGAACATGGCATCGACATTGATATGAGAGCTAT
1 TGTAAGACCATGTTTGGGACATGGCATCGGCATTGATATGAGAGCTAG
* * * ** * *
83243890 TGTAAGACCATGTCTGGGACATGGCATCGACCTCAATATGTGAGCCAG
1 TGTAAGACCATGTTTGGGACATGGCATCGGCATTGATATGAGAGCTAG
* * ** * *
83243938 CGTAAGACCATGTTTGGAACATGGCATCAACATTTATATGAAAGCTAG
1 TGTAAGACCATGTTTGGGACATGGCATCGGCATTGATATGAGAGCTAG
* * * * * * *
83243986 TGTAAGACCATGTCTGGGACATGGCGTTGGCCTCGATATGTGACCTAG
1 TGTAAGACCATGTTTGGGACATGGCATCGGCATTGATATGAGAGCTAG
*
83244034 TGTAAGACCATGTTT-GGAGCATGGCATCGGCATTGGTATGAGAGCTAG
1 TGTAAGACCATGTTTGGGA-CATGGCATCGGCATTGATATGAGAGCTAG
* ** * *
83244082 TGTAAGACCATGTTTGGGACATCGCATCGGCCCCT-ATATGTGAGCCAG
1 TGTAAGACCATGTTTGGGACATGGCATCGG-CATTGATATGAGAGCTAG
* * * * *
83244130 TGTAAGACCATGTTTGGAACCTGGCATTGGTATTTATATGAGAGCTAG
1 TGTAAGACCATGTTTGGGACATGGCATCGGCATTGATATGAGAGCTAG
* * * * * * *
83244178 TGTAAGACCATGTCTAGGACATGGCGTCGGCCTTAATATGTGAGCTAA
1 TGTAAGACCATGTTTGGGACATGGCATCGGCATTGATATGAGAGCTAG
* * ** * *
83244226 TGTAAGACCATATTTGGAACATGGCATCGGCACCGATATATGAGAACCAG
1 TGTAAGACCATGTTTGGGACATGGCATCGGCATTG--ATATGAGAGCTAG
* * *
83244276 TGTAAAACCATGTCTGGGACATGGCATTGGCAT
1 TGTAAGACCATGTTTGGGACATGGCATCGGCAT
83244309 CTTGCTCTTT
Statistics
Matches: 329, Mismatches: 84, Indels: 10
0.78 0.20 0.02
Matches are distributed among these distances:
47 4 0.01
48 284 0.86
49 5 0.02
50 36 0.11
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.27
Consensus pattern (48 bp):
TGTAAGACCATGTTTGGGACATGGCATCGGCATTGATATGAGAGCTAG
Found at i:83244000 original size:96 final size:96
Alignment explanation
Indices: 83243836--83244302 Score: 594
Period size: 96 Copynumber: 4.8 Consensus size: 96
83243826 GGGTTACGTA
* * *
83243836 AGCCAATGTAAGACCATGTTTGGAACATGGCATCGACATTGATATGAGAGCTATTGTAAGACCAT
1 AGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTTATATGAGAGCTAGTGTAAGACCAT
*
83243901 GTCTGGGACATGGCATCGACCTCAATATGTG
66 GTCTGGGACATGGCATCGGCCTCAATATGTG
* * *
83243932 AGCCAGCGTAAGACCATGTTTGGAACATGGCATCAACATTTATATGAAAGCTAGTGTAAGACCAT
1 AGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTTATATGAGAGCTAGTGTAAGACCAT
* * *
83243997 GTCTGGGACATGGCGTTGGCCTCGATATGTG
66 GTCTGGGACATGGCATCGGCCTCAATATGTG
* * **
83244028 A-CCTAGTGTAAGACCATGTTTGGAGCATGGCATCGGCATTGGTATGAGAGCTAGTGTAAGACCA
1 AGCC-AGTGTAAGACCATGTTTGGAACATGGCATCGACATTTATATGAGAGCTAGTGTAAGACCA
* * * *
83244092 TGTTTGGGACATCGCATCGGCCCCTATATGTG
65 TGTCTGGGACATGGCATCGGCCTCAATATGTG
* * **
83244124 AGCCAGTGTAAGACCATGTTTGGAACCTGGCATTGGTATTTATATGAGAGCTAGTGTAAGACCAT
1 AGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTTATATGAGAGCTAGTGTAAGACCAT
* * *
83244189 GTCTAGGACATGGCGTCGGCCTTAATATGTG
66 GTCTGGGACATGGCATCGGCCTCAATATGTG
* * * *** * * *
83244220 AGCTAATGTAAGACCATATTTGGAACATGGCATCGGCACCGATATATGAGAACCAGTGTAAAACC
1 AGCCAGTGTAAGACCATGTTTGGAACATGGCATC-G-ACATTTATATGAGAGCTAGTGTAAGACC
83244285 ATGTCTGGGACATGGCAT
64 ATGTCTGGGACATGGCAT
83244303 TGGCATCTTG
Statistics
Matches: 316, Mismatches: 51, Indels: 6
0.85 0.14 0.02
Matches are distributed among these distances:
95 2 0.01
96 275 0.87
97 3 0.01
98 36 0.11
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (96 bp):
AGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTTATATGAGAGCTAGTGTAAGACCAT
GTCTGGGACATGGCATCGGCCTCAATATGTG
Found at i:83244169 original size:192 final size:192
Alignment explanation
Indices: 83243840--83244302 Score: 656
Period size: 192 Copynumber: 2.4 Consensus size: 192
83243830 TACGTAAGCC
* *
83243840 AATGTAAGACCATGTTTGGAACATGGCATCGACATTGATATGAGAGCTATTGTAAGACCATGTCT
1 AATGTAAGACCATGTTTGGAACATGGCATCGGCATTGATATGAGAGCTAGTGTAAGACCATGTCT
*
83243905 GGGACATGGCATCGACCTCAATATGTGAGCCAGCGTAAGACCATGTTTGGAACATGGCATCAACA
66 GGGACATGGCATCGACCCCAATATGTGAGCCAGCGTAAGACCATGTTTGGAACATGGCATCAACA
* * *
83243970 TTTATATGAAAGCTAGTGTAAGACCATGTCTGGGACATGGCGTTGGCCTCGATATGTGACCT
131 TTTATATGAAAGCTAGTGTAAGACCATGTCTAGGACATGGCGTCGGCCTCAATATGTGACCT
* * * *
83244032 AGTGTAAGACCATGTTTGGAGCATGGCATCGGCATTGGTATGAGAGCTAGTGTAAGACCATGTTT
1 AATGTAAGACCATGTTTGGAACATGGCATCGGCATTGATATGAGAGCTAGTGTAAGACCATGTCT
* * * * * ****
83244097 GGGACATCGCATCGGCCCCTATATGTGAGCCAGTGTAAGACCATGTTTGGAACCTGGCATTGGTA
66 GGGACATGGCATCGACCCCAATATGTGAGCCAGCGTAAGACCATGTTTGGAACATGGCATCAACA
* * *
83244162 TTTATATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCGTCGGCCTTAATATGTGAGCT
131 TTTATATGAAAGCTAGTGTAAGACCATGTCTAGGACATGGCGTCGGCCTCAATATGTGACCT
* ** * * *
83244224 AATGTAAGACCATATTTGGAACATGGCATCGGCACCGATATATGAGAACCAGTGTAAAACCATGT
1 AATGTAAGACCATGTTTGGAACATGGCATCGGCATTG--ATATGAGAGCTAGTGTAAGACCATGT
83244289 CTGGGACATGGCAT
64 CTGGGACATGGCAT
83244303 TGGCATCTTG
Statistics
Matches: 236, Mismatches: 33, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
192 202 0.86
194 34 0.14
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.27
Consensus pattern (192 bp):
AATGTAAGACCATGTTTGGAACATGGCATCGGCATTGATATGAGAGCTAGTGTAAGACCATGTCT
GGGACATGGCATCGACCCCAATATGTGAGCCAGCGTAAGACCATGTTTGGAACATGGCATCAACA
TTTATATGAAAGCTAGTGTAAGACCATGTCTAGGACATGGCGTCGGCCTCAATATGTGACCT
Found at i:83245951 original size:31 final size:31
Alignment explanation
Indices: 83245913--83245976 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
83245903 CCTTTTCATA
83245913 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
83245944 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
83245975 TT
1 TT
83245977 ACTGTAAACG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:83246219 original size:24 final size:24
Alignment explanation
Indices: 83246168--83246334 Score: 257
Period size: 24 Copynumber: 7.0 Consensus size: 24
83246158 GCTTTATCAT
* *
83246168 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
* **
83246193 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTG
83246217 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTG
83246240 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
83246264 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
83246288 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
83246312 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
83246335 TCACTTCCTC
Statistics
Matches: 135, Mismatches: 5, Indels: 5
0.93 0.03 0.03
Matches are distributed among these distances:
23 23 0.17
24 100 0.74
25 12 0.09
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:83246268 original size:71 final size:71
Alignment explanation
Indices: 83246167--83246334 Score: 257
Period size: 71 Copynumber: 2.3 Consensus size: 71
83246157 TGCTTTATCA
*
83246167 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
83246231 AGCCCTTT
64 AGCCCTTT
* * **
83246239 TATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAG
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAAG
83246304 CCCTTT
66 CCCTTT
83246310 TGATAACTGGGGCATAAGCCCTTTT
1 T-ATAACTGGGGCATAAGCCCTTTT
83246335 TCACTTCCTC
Statistics
Matches: 89, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
71 53 0.60
72 36 0.40
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (71 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAAG
CCCTTT
Found at i:83246410 original size:20 final size:20
Alignment explanation
Indices: 83246385--83246444 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
83246375 TATGATTACC
83246385 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
83246405 TCATGTGCATAGCATACATT
1 TCATGTGCATATCATACATA
83246425 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
83246445 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:83248129 original size:27 final size:27
Alignment explanation
Indices: 83247774--83248118 Score: 392
Period size: 27 Copynumber: 12.8 Consensus size: 27
83247764 GGGTATTTTA
* * *
83247774 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAAACG
* * * *
83247801 GTAATTTTGTAAATCAAGGGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAAACG
* * * **
83247828 GTAATTTTGTAAATCAAGGGTAAAATA
1 GTAATTCTATAAATCGAGGGTAAAACG
*
83247855 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
83247882 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
83247909 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* * * *
83247936 ATAATTATGTAAATCTG-GGGTAAAATG
1 GTAATTCTATAAATC-GAGGGTAAAACG
* * *
83247963 GTAATTATGTAAAT-TAGGGGTAAAACG
1 GTAATTCTATAAATCGA-GGGTAAAACG
**
83247990 GTAATTCTATAAATCGAGGGTAAAATA
1 GTAATTCTATAAATCGAGGGTAAAACG
*
83248017 GTAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTATAAATC-GAGGGTAAAACG
83248044 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
83248071 GTAATTTTACAAATCG-GGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
83248097 GTAATTCTATAAATCGAGGGTA
1 GTAATTCTATAAATCGAGGGTA
83248119 CTTTGGTAAT
Statistics
Matches: 284, Mismatches: 27, Indels: 14
0.87 0.08 0.04
Matches are distributed among these distances:
26 25 0.09
27 256 0.90
28 3 0.01
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAACG
Found at i:83248140 original size:27 final size:27
Alignment explanation
Indices: 83248043--83248346 Score: 224
Period size: 27 Copynumber: 11.3 Consensus size: 27
83248033 AGGGTAAAAC
* * ****
83248043 GGTAATTCTATAAATCGAGGGTAAAAC
1 GGTAATTTTACAAATCGAGGGTATTTT
****
83248070 GGTAATTTTACAAATCG-GGGTAAAAC
1 GGTAATTTTACAAATCGAGGGTATTTT
* * *
83248096 GGTAATTCTATAAATCGAGGGTACTTT
1 GGTAATTTTACAAATCGAGGGTATTTT
* *
83248123 GGTAATTTTACAAGTCGAGGGTATTTC
1 GGTAATTTTACAAATCGAGGGTATTTT
** ** *
83248150 AATAATTTTACAGGTCGAGGGTATTTC
1 GGTAATTTTACAAATCGAGGGTATTTT
* * *
83248177 AGTAATTTCACAAAT-TAGGGGTATTTT
1 GGTAATTTTACAAATCGA-GGGTATTTT
*
83248204 GGTAATTTTACAAA-CTAGGGGTATTTT
1 GGTAATTTTACAAATCGA-GGGTATTTT
* *
83248231 GATAATTTTACAAA-CTAGGGGTATTTT
1 GGTAATTTTACAAATCGA-GGGTATTTT
*
83248258 GGTAATTTTACAAA-CTAGGGGTATTTT
1 GGTAATTTTACAAATCGA-GGGTATTTT
* * * *
83248285 GGTAATTTTATAAACCAATGGTATTTT
1 GGTAATTTTACAAATCGAGGGTATTTT
** *
83248312 AATAATTTTACAAAGC-AGGGTATTTT
1 GGTAATTTTACAAATCGAGGGTATTTT
83248338 GGTAATTTT
1 GGTAATTTT
83248347 GTAAACCAAA
Statistics
Matches: 237, Mismatches: 36, Indels: 9
0.84 0.13 0.03
Matches are distributed among these distances:
26 41 0.17
27 194 0.82
28 2 0.01
ACGTcount: A:0.33, C:0.09, G:0.21, T:0.38
Consensus pattern (27 bp):
GGTAATTTTACAAATCGAGGGTATTTT
Found at i:83248360 original size:26 final size:26
Alignment explanation
Indices: 83248196--83248363 Score: 165
Period size: 27 Copynumber: 6.3 Consensus size: 26
83248186 ACAAATTAGG
* *
83248196 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACCA-A
* * *
83248223 GGTATTTTGATAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACCA-A
* *
83248250 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACCA-A
*
83248277 GGTATTTTGGTAATTTTATAAACCAA
1 GGTATTTTGGTAATTTTACAAACCAA
** * *
83248303 TGGTATTTTAATAATTTTACAAAGCAG
1 -GGTATTTTGGTAATTTTACAAACCAA
**
83248330 GGTATTTTGGTAATTTTGTAAACCAA
1 GGTATTTTGGTAATTTTACAAACCAA
*
83248356 AGTATTTT
1 GGTATTTT
83248364 AAACATGGAT
Statistics
Matches: 123, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
26 27 0.22
27 96 0.78
ACGTcount: A:0.32, C:0.07, G:0.18, T:0.42
Consensus pattern (26 bp):
GGTATTTTGGTAATTTTACAAACCAA
Found at i:83258700 original size:20 final size:20
Alignment explanation
Indices: 83258675--83258719 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
83258665 AGGGACTAAA
* *
83258675 ATGAAAAGTTGTAAAATTTG
1 ATGAAAAATTCTAAAATTTG
*
83258695 ATGAAAAATTCTAAAATTTT
1 ATGAAAAATTCTAAAATTTG
83258715 ATGAA
1 ATGAA
83258720 TACATATGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.49, C:0.02, G:0.13, T:0.36
Consensus pattern (20 bp):
ATGAAAAATTCTAAAATTTG
Found at i:83259234 original size:6 final size:6
Alignment explanation
Indices: 83259223--83259248 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
83259213 TCCCCACATT
83259223 AAAATA AAAATA AAAATA AAAATA AA
1 AAAATA AAAATA AAAATA AAAATA AA
83259249 GAGGCCTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:83259535 original size:34 final size:34
Alignment explanation
Indices: 83259497--83259572 Score: 107
Period size: 34 Copynumber: 2.2 Consensus size: 34
83259487 TTATCCCCTC
* *
83259497 TTTCAGTAGCAGAAGCAGTCTGGGCCTGAGCCCA
1 TTTCAGTAACAGAAGCAGTCTGGGCATGAGCCCA
** *
83259531 TTTCAGTAACAGTGGCAGTCTGGGCATTAGCCCA
1 TTTCAGTAACAGAAGCAGTCTGGGCATGAGCCCA
83259565 TTTCAGTA
1 TTTCAGTA
83259573 CAGTACGCAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.26
Consensus pattern (34 bp):
TTTCAGTAACAGAAGCAGTCTGGGCATGAGCCCA
Found at i:83266678 original size:40 final size:39
Alignment explanation
Indices: 83266627--83266774 Score: 217
Period size: 40 Copynumber: 3.7 Consensus size: 39
83266617 GATATAGCCA
*
83266627 ACTCGCTCAAATGCCTTCGGGACTTAGCCCGGATATAGT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
*
83266666 AGTTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
1 A-CTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
*
83266706 AACTCGCGCAAATGCCTTCGGGACTTAGCCCGGA-ATTAGT
1 -ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-TAGT
*
83266746 CACTAGCACAAATGCCTTCGGGACTTAGC
1 -ACTCGCACAAATGCCTTCGGGACTTAGC
83266775 TCGGTTATCA
Statistics
Matches: 99, Mismatches: 7, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
39 2 0.02
40 96 0.97
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
Found at i:83266733 original size:80 final size:81
Alignment explanation
Indices: 83266614--83266774 Score: 247
Period size: 80 Copynumber: 2.0 Consensus size: 81
83266604 CGGGCTTTAA
* * *
83266614 CCGGATATAGCCAACTCGCTCAAATGCCTTCGGGACTTAGCCCGG-ATATAGT-AGTTCGCACAA
1 CCGGATATAGCCAACTCGCGCAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTCA-CTAGCACAA
83266677 ATGCCTTCGGGACTTAGC
64 ATGCCTTCGGGACTTAGC
*
83266695 CCGGATATAG-TAACTCGCGCAAATGCCTTCGGGACTTAGCCCGGAATTAGTCACTAGCACAAAT
1 CCGGATATAGCCAACTCGCGCAAATGCCTTCGGGACTTAGCCCGGAATTAGTCACTAGCACAAAT
83266759 GCCTTCGGGACTTAGC
66 GCCTTCGGGACTTAGC
83266775 TCGGTTATCA
Statistics
Matches: 74, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
80 61 0.82
81 13 0.18
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (81 bp):
CCGGATATAGCCAACTCGCGCAAATGCCTTCGGGACTTAGCCCGGAATTAGTCACTAGCACAAAT
GCCTTCGGGACTTAGC
Found at i:83270745 original size:93 final size:93
Alignment explanation
Indices: 83270633--83270804 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
83270623 GCCCACAAGT
* * *
83270633 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAACTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
83270698 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
83270726 GAACTCGGACTCAACTCAACGAATTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAACTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
83270791 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
83270805 CAAATATCCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.31, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAACTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:83270800 original size:46 final size:46
Alignment explanation
Indices: 83270629--83270800 Score: 211
Period size: 46 Copynumber: 3.7 Consensus size: 46
83270619 ACCCGCCCAC
* *
83270629 AAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCAT
1 AAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCAT
* * * *
83270675 AAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TTACAT
1 AAGTGAACTCGGACTCAACTCAACGAGCTCGGACG-CTCGCATCCAT
*** **
83270721 CTCTCGAACTCGGACTCAACTCAACGAATTCGGACGCTCGCATCCAT
1 AAGT-GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCAT
*
83270768 AAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 AAGTGAACTCGGACTCAACTCAACGAGCTCGGA
83270801 TGCCCAAATA
Statistics
Matches: 104, Mismatches: 19, Indels: 6
0.81 0.15 0.05
Matches are distributed among these distances:
46 69 0.66
47 35 0.34
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
AAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCAT
Found at i:83272500 original size:42 final size:42
Alignment explanation
Indices: 83272454--83272534 Score: 117
Period size: 42 Copynumber: 1.9 Consensus size: 42
83272444 AGCCCAAACA
* * *
83272454 GTTTATCCAAAATAATGATGCTCTTAAACATGAGCTTAAATT
1 GTTTAACCAAAACAATGATGCTCCTAAACATGAGCTTAAATT
* *
83272496 GTTTAACCCAAACAATGATGCTCCTAAGCATGAGCTTAA
1 GTTTAACCAAAACAATGATGCTCCTAAACATGAGCTTAA
83272535 GTAGTAAACC
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.37, C:0.19, G:0.14, T:0.31
Consensus pattern (42 bp):
GTTTAACCAAAACAATGATGCTCCTAAACATGAGCTTAAATT
Found at i:83274027 original size:46 final size:46
Alignment explanation
Indices: 83273974--83274149 Score: 210
Period size: 46 Copynumber: 3.8 Consensus size: 46
83273964 TATTTGGGCA
*
83273974 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACG
* *** * * * *
83274020 TCTGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATACGA-ACG
* *
83274067 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACG
* *
83274113 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
83274150 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
46 73 0.68
47 34 0.32
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACG
Found at i:83274129 original size:93 final size:93
Alignment explanation
Indices: 83273970--83274141 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
83273960 AGGATATTTG
* * *
83273970 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAATGTCTGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAG
83274035 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * *
83274063 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAG
83274128 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
83274142 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:83282432 original size:27 final size:28
Alignment explanation
Indices: 83282376--83282445 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
83282366 AAATTTGTAC
83282376 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
83282404 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
83282431 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
83282446 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:83282456 original size:27 final size:27
Alignment explanation
Indices: 83282376--83282457 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
83282366 AAATTTGTAC
* *
83282376 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
83282404 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
83282431 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
83282458 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:83288851 original size:45 final size:45
Alignment explanation
Indices: 83288800--83288889 Score: 180
Period size: 45 Copynumber: 2.0 Consensus size: 45
83288790 GATACTCGGA
83288800 AGAATCCATAATTAAGCAATATTAAAATTAAGAAATTGCCAAATT
1 AGAATCCATAATTAAGCAATATTAAAATTAAGAAATTGCCAAATT
83288845 AGAATCCATAATTAAGCAATATTAAAATTAAGAAATTGCCAAATT
1 AGAATCCATAATTAAGCAATATTAAAATTAAGAAATTGCCAAATT
83288890 GTAGAAAAAT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.51, C:0.11, G:0.09, T:0.29
Consensus pattern (45 bp):
AGAATCCATAATTAAGCAATATTAAAATTAAGAAATTGCCAAATT
Found at i:83288888 original size:16 final size:15
Alignment explanation
Indices: 83288824--83288889 Score: 50
Period size: 16 Copynumber: 4.3 Consensus size: 15
83288814 AGCAATATTA
83288824 AAATTAAGAAATTGCC
1 AAATTAAGAAATT-CC
83288840 AAATT-AG-AA-TCC
1 AAATTAAGAAATTCC
*
83288852 ATAATTAAGCAATATT-A
1 A-AATTAAG-AA-ATTCC
83288869 AAATTAAGAAATTGCC
1 AAATTAAGAAATT-CC
83288885 AAATT
1 AAATT
83288890 GTAGAAAAAT
Statistics
Matches: 40, Mismatches: 2, Indels: 16
0.69 0.03 0.28
Matches are distributed among these distances:
12 3 0.08
13 5 0.12
14 7 0.17
15 4 0.10
16 18 0.45
17 2 0.05
18 1 0.03
ACGTcount: A:0.52, C:0.11, G:0.09, T:0.29
Consensus pattern (15 bp):
AAATTAAGAAATTCC
Found at i:83295586 original size:16 final size:16
Alignment explanation
Indices: 83295565--83295595 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
83295555 ACGATGAATA
83295565 GGGGACCGACCCTTCG
1 GGGGACCGACCCTTCG
*
83295581 GGGGACTGACCCTTC
1 GGGGACCGACCCTTC
83295596 AAGAATATTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.13, C:0.35, G:0.35, T:0.16
Consensus pattern (16 bp):
GGGGACCGACCCTTCG
Found at i:83301232 original size:19 final size:20
Alignment explanation
Indices: 83301205--83301242 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
83301195 AACATCGACA
83301205 GACTCAAGATCTCC-TTCAG
1 GACTCAAGATCTCCATTCAG
*
83301224 GACTGAAGATCTCCATTCA
1 GACTCAAGATCTCCATTCA
83301243 ATTTCTTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (20 bp):
GACTCAAGATCTCCATTCAG
Found at i:83303695 original size:38 final size:38
Alignment explanation
Indices: 83303639--83303718 Score: 115
Period size: 38 Copynumber: 2.1 Consensus size: 38
83303629 GATGTGTATT
* * * *
83303639 CGGGTTAAATCCCGCAGGCTTCGTGTTGGTATTATATC
1 CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATC
*
83303677 CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATT
1 CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATC
83303715 CGGG
1 CGGG
83303719 CCTTCGTGCC
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.20, C:0.21, G:0.29, T:0.30
Consensus pattern (38 bp):
CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATC
Found at i:83303828 original size:43 final size:43
Alignment explanation
Indices: 83303690--83303919 Score: 333
Period size: 43 Copynumber: 5.4 Consensus size: 43
83303680 GATAAATCCC
* * *
83303690 GCAGGCCTAGTGCTGGT-AT-TATATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
*
83303731 GCAGGCTTAGTGCCGGTGATGTGTATTCAGGCCTT--TGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
83303772 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
*
83303815 GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* * * *
83303858 GCATGCTTCGTGTCGGTGATGTGTATTTGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* *
83303901 GCAGGCGTAATGCCGGTGA
1 GCAGGCTTAGTGCCGGTGA
83303920 AATGATATGT
Statistics
Matches: 171, Mismatches: 14, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
41 55 0.32
42 2 0.01
43 114 0.67
ACGTcount: A:0.13, C:0.23, G:0.33, T:0.31
Consensus pattern (43 bp):
GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
Found at i:83304310 original size:45 final size:44
Alignment explanation
Indices: 83304236--83304361 Score: 136
Period size: 45 Copynumber: 2.9 Consensus size: 44
83304226 TTGACTTGAT
* * **
83304236 TATTCGGGCCTTTGAGCTTAGCAAACTATAATGCCGGTGAGATAC
1 TATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGA-AC
*
83304281 TATTCGGGCCTTCGAGCCTAGTAGGCTATAATGCCGGT--GAAC
1 TATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGAAC
*
83304323 TGATATCGGGCC-TCGAGCCTAACAGG-TA-AATGCCGGTGA
1 T-AT-TCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGA
83304362 TTTGATATAA
Statistics
Matches: 70, Mismatches: 7, Indels: 10
0.80 0.08 0.11
Matches are distributed among these distances:
41 9 0.13
42 5 0.07
43 16 0.23
44 7 0.10
45 33 0.47
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (44 bp):
TATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGAAC
Found at i:83306328 original size:12 final size:13
Alignment explanation
Indices: 83306311--83306339 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
83306301 GCAATTTAAA
83306311 TTTTATT-CTAAT
1 TTTTATTACTAAT
83306323 TTTTATTACTAAT
1 TTTTATTACTAAT
83306336 TTTT
1 TTTT
83306340 TCTTTTCTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 7 0.44
13 9 0.56
ACGTcount: A:0.24, C:0.07, G:0.00, T:0.69
Consensus pattern (13 bp):
TTTTATTACTAAT
Found at i:83308831 original size:11 final size:11
Alignment explanation
Indices: 83308815--83308840 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
83308805 AGATTAGAGA
83308815 TAGAGTTTTAT
1 TAGAGTTTTAT
83308826 TAGAGTTTTAT
1 TAGAGTTTTAT
83308837 TAGA
1 TAGA
83308841 TGCCGCAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.31, C:0.00, G:0.19, T:0.50
Consensus pattern (11 bp):
TAGAGTTTTAT
Found at i:83318503 original size:6 final size:6
Alignment explanation
Indices: 83318494--83318527 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
83318484 CACCCCCATC
*
83318494 CCCTAG CCCTCG CCCTCG CCCTCG CCCTCG CCCT
1 CCCTCG CCCTCG CCCTCG CCCTCG CCCTCG CCCT
83318528 AATCCTGTCC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.03, C:0.65, G:0.15, T:0.18
Consensus pattern (6 bp):
CCCTCG
Found at i:83324106 original size:46 final size:44
Alignment explanation
Indices: 83324002--83324109 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
83323992 TGTCTTTGAC
** * * *
83324002 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
83324046 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
83324092 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
83324110 TTTCGTTCTG
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:83331495 original size:46 final size:44
Alignment explanation
Indices: 83331391--83331498 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
83331381 TGTCTTTGAC
** * * *
83331391 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
83331435 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
83331481 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
83331499 TTTCGTTCTG
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:83339586 original size:45 final size:44
Alignment explanation
Indices: 83339483--83339778 Score: 293
Period size: 44 Copynumber: 6.8 Consensus size: 44
83339473 GGTACTAATT
* * *
83339483 GGGCCTTTGAGCCTAGTAGGCTATAATGTCGGTGAAATGATATC
1 GGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGATATC
* * * *
83339527 GGGCTTTTGAGCCTAGCAGGCTATAATGCCAGTGAGAT-ACTATTC
1 GGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGA-TA-TC
*
83339572 GGGCCTTCGAGCCTAGCAGGCTATAATGCCTGTGAAATGATATC
1 GGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGATATC
* * * *
83339616 GAGCCTTTGAACCTAGCAGGCTATAATGCCGGTGAGAT-ACTATTC
1 GGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGA-TA-TC
* *
83339661 GGGCCTTCGCGCCTAGCAGGCTATAATGCCGATGAAATGATATC
1 GGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGATATC
* * * *
83339705 GGG-TTTCGAGCCTAGCAGGC-AAAATGCTGGTG-GATGA-ATCC
1 GGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGATAT-C
* ** *
83339746 GGG-TTTAAAACCTAGCAGGCTA-AATGCCGGTGA
1 GGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGA
83339779 TTTGATAAAA
Statistics
Matches: 213, Mismatches: 30, Indels: 20
0.81 0.11 0.08
Matches are distributed among these distances:
40 2 0.01
41 31 0.15
42 10 0.05
43 17 0.08
44 77 0.36
45 74 0.35
46 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (44 bp):
GGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGATATC
Found at i:83339631 original size:89 final size:88
Alignment explanation
Indices: 83339475--83339705 Score: 347
Period size: 89 Copynumber: 2.6 Consensus size: 88
83339465 TATCGTACGG
* * * * * *
83339475 TACTAATT-GGGCCTTTGAGCCTAGTAGGCTATAATGTCGGTGAAATGATATCGGGCTTTTGAGC
1 TACT-ATTCGGGCCTTCGAGCCTAGCAGGCTATAATG-CCGTGAAATGATATCGAGCCTTTGAAC
83339539 CTAGCAGGCTATAATGCCAGTGAGA
64 CTAGCAGGCTATAATGCCAGTGAGA
83339564 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCTGTGAAATGATATCGAGCCTTTGAACC
1 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCC-GTGAAATGATATCGAGCCTTTGAACC
*
83339629 TAGCAGGCTATAATGCCGGTGAGA
65 TAGCAGGCTATAATGCCAGTGAGA
*
83339653 TACTATTCGGGCCTTCGCGCCTAGCAGGCTATAATGCCGATGAAATGATATCG
1 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCG-TGAAATGATATCG
83339706 GGTTTCGAGC
Statistics
Matches: 131, Mismatches: 8, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
88 5 0.04
89 126 0.96
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (88 bp):
TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGTGAAATGATATCGAGCCTTTGAACCT
AGCAGGCTATAATGCCAGTGAGA
Found at i:83339930 original size:42 final size:42
Alignment explanation
Indices: 83339884--83339967 Score: 159
Period size: 42 Copynumber: 2.0 Consensus size: 42
83339874 TTGTGAGTTT
*
83339884 GATTTGAATTGAATTATTAGTGTATAATGTGATACATATGTG
1 GATTTGAATTGAATTATAAGTGTATAATGTGATACATATGTG
83339926 GATTTGAATTGAATTATAAGTGTATAATGTGATACATATGTG
1 GATTTGAATTGAATTATAAGTGTATAATGTGATACATATGTG
83339968 AATAAATGTT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.35, C:0.02, G:0.21, T:0.42
Consensus pattern (42 bp):
GATTTGAATTGAATTATAAGTGTATAATGTGATACATATGTG
Found at i:83341887 original size:17 final size:17
Alignment explanation
Indices: 83341862--83341914 Score: 54
Period size: 17 Copynumber: 3.1 Consensus size: 17
83341852 CTTCTATTTA
*
83341862 TTTAATTATTTTTTATT
1 TTTATTTATTTTTTATT
83341879 TTTATTTA-TTTTTATT
1 TTTATTTATTTTTTATT
* *
83341895 CTTAATATATTATTTTATT
1 -TTTATTTATT-TTTTATT
83341914 T
1 T
83341915 CTTTATTCTT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
16 8 0.27
17 13 0.43
18 2 0.07
19 7 0.23
ACGTcount: A:0.25, C:0.02, G:0.00, T:0.74
Consensus pattern (17 bp):
TTTATTTATTTTTTATT
Found at i:83341892 original size:16 final size:16
Alignment explanation
Indices: 83341871--83341930 Score: 50
Period size: 16 Copynumber: 3.7 Consensus size: 16
83341861 ATTTAATTAT
83341871 TTTTTATTTTTATTTA
1 TTTTTATTTTTATTTA
* *
83341887 TTTTTATTCTTAATATA
1 TTTTTATT-TTTATTTA
* *
83341904 TTATTT-TATTTCTTTA
1 TT-TTTATTTTTATTTA
*
83341920 TTCTTATTTTT
1 TTTTTATTTTT
83341931 CTTATTATTC
Statistics
Matches: 33, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
15 2 0.06
16 19 0.58
17 9 0.27
18 3 0.09
ACGTcount: A:0.20, C:0.05, G:0.00, T:0.75
Consensus pattern (16 bp):
TTTTTATTTTTATTTA
Found at i:83357196 original size:47 final size:45
Alignment explanation
Indices: 83357121--83357662 Score: 259
Period size: 47 Copynumber: 11.6 Consensus size: 45
83357111 GTAAGGTGCT
* * * *
83357121 GATGCCATGTCCCAGACACGGACTTACACTGGCTCACATCTTAAGTT
1 GATG-CATGTCCCAAACATGGTCTTACACTGGCT-ACATCTTAAGTC
* * * *
83357168 GATACTATGTCCCAAACATGGTCTTACACTGACTATAATCTCGT-AGCC
1 GATGC-ATGTCCCAAACATGGTCTTACACTGGCTA-CATCT--TAAGTC
* * *
83357216 GATGCATGTCCCAAACAT-GTCCTACACTGGCTTACGTCTCAAGTC
1 GATGCATGTCCCAAACATGGTCTTACACTGGC-TACATCTTAAGTC
* * * * *
83357261 GATGCCATGTCCCAGACATGGCCTTACACTGACTATCATTTTGTAG-C
1 GATG-CATGTCCCAAACATGGTCTTACACTGGCTA-CATCTT-AAGTC
* * * * *
83357308 TGATGCATGTCCTAGACAT-GTCTTATACTGGCTTACGTCTCAAGTC
1 -GATGCATGTCCCAAACATGGTCTTACACTGGC-TACATCTTAAGTC
* * * *
83357354 AATGCCATGTCCCAGACATGGTTTTACACTGAG-TATCATCTCGT-AGCC
1 GATG-CATGTCCCAAACATGGTCTTACACTG-GCTA-CATCT--TAAGTC
* * * *
83357402 GACGCATGGCCCAGACAT-GTCTTACACTGGCTTACATCTCAAGTC
1 GATGCATGTCCCAAACATGGTCTTACACTGGC-TACATCTTAAGTC
* * * * * *
83357447 GATGCCATGTCCTAGACATAGTCTTACACTGACTATCATCTTGTAGCC
1 GATG-CATGTCCCAAACATGGTCTTACACTGGCTA-CATCTT-AAGTC
** * * *
83357495 GATGCATGTCTTATACAT-GTCTTACACTGGCTTACATCTCGAGGTC
1 GATGCATGTCCCAAACATGGTCTTACACTGGC-TACATCT-TAAGTC
* **
83357541 GATGCATGTCCCAGACAT-GTCTTACACAAGC-AC-TCGTCTCAA-TGC
1 GATGCATGTCCCAAACATGGTCTTACACTGGCTACATC-T-T-AAGT-C
* * *
83357586 TGATGCCATGTCCTAGACATGGTCTTACACTGGCT-C-TCATAATGTGGCC
1 -GATG-CATGTCCCAAACATGGTCTTACACTGGCTACATCTTAA-GT---C
*
83357635 GATGCATGTTCCAAACAT-GTCTTACACT
1 GATGCATGTCCCAAACATGGTCTTACACT
83357663 AGTTCACACA
Statistics
Matches: 383, Mismatches: 73, Indels: 79
0.72 0.14 0.15
Matches are distributed among these distances:
43 2 0.01
44 5 0.01
45 23 0.06
46 149 0.39
47 159 0.42
48 43 0.11
49 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (45 bp):
GATGCATGTCCCAAACATGGTCTTACACTGGCTACATCTTAAGTC
Found at i:83357307 original size:93 final size:93
Alignment explanation
Indices: 83357121--83357567 Score: 574
Period size: 93 Copynumber: 4.8 Consensus size: 93
83357111 GTAAGGTGCT
* * * * * * * *
83357121 GATGCCATGTCCCAGACACGGACTTACACTGGCTCACATCTTAAGTTGATACTATGTCCCAAACA
1 GATG-CATGTCCCAGACA-TGTCTTACACTGGCTTACATCTCAAGTCGATGCCATGTCCCAGACA
*
83357186 TGGTCTTACACTGACTATAATCTCGTAGCC
64 TGGTCTTACACTGACTATCATCTCGTAGCC
* * *
83357216 GATGCATGTCCCAAACATGTCCTACACTGGCTTACGTCTCAAGTCGATGCCATGTCCCAGACATG
1 GATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCAAGTCGATGCCATGTCCCAGACATG
* * * *
83357281 GCCTTACACTGACTATCATTTTGTAGCT
66 GTCTTACACTGACTATCATCTCGTAGCC
* * * *
83357309 GATGCATGTCCTAGACATGTCTTATACTGGCTTACGTCTCAAGTCAATGCCATGTCCCAGACATG
1 GATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCAAGTCGATGCCATGTCCCAGACATG
* *
83357374 GTTTTACACTGAGTATCATCTCGTAGCC
66 GTCTTACACTGACTATCATCTCGTAGCC
* * * *
83357402 GACGCATGGCCCAGACATGTCTTACACTGGCTTACATCTCAAGTCGATGCCATGTCCTAGACATA
1 GATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCAAGTCGATGCCATGTCCCAGACATG
*
83357467 GTCTTACACTGACTATCATCTTGTAGCC
66 GTCTTACACTGACTATCATCTCGTAGCC
** * *
83357495 GATGCATGTCTTATACATGTCTTACACTGGCTTACATCTCGAGGTCGATG-CATGTCCCAGACAT
1 GATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTC-AAGTCGATGCCATGTCCCAGACAT
83357559 -GTCTTACAC
65 GGTCTTACAC
83357568 AAGCACTCGT
Statistics
Matches: 306, Mismatches: 45, Indels: 5
0.86 0.13 0.01
Matches are distributed among these distances:
92 9 0.03
93 273 0.89
94 20 0.07
95 4 0.01
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (93 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCAAGTCGATGCCATGTCCCAGACATG
GTCTTACACTGACTATCATCTCGTAGCC
Found at i:83357513 original size:140 final size:140
Alignment explanation
Indices: 83357390--83357662 Score: 340
Period size: 140 Copynumber: 2.0 Consensus size: 140
83357380 CACTGAGTAT
** *
83357390 CATCTCGTA-GCCGACGCATGGCCCAGACATGTCTTACACTGGC-TTACATCTCAA-G-TCGATG
1 CATCTCG-AGGCCGACGCATGGCCCAGACATGTCTTACACAAGCACT-CATCTCAATGCT-GATG
**
83357451 CCATGTCCTAGACATAGTCTTACACTGACTATCATCTTGTAGCCGATGCATGTCTTATACATGTC
63 CCATGTCCTAGACATAGTCTTACACTGACTATCATAATGTAGCCGATGCATGTCTTATACATGTC
83357516 TTACACTGGCTTA
128 TTACACTGGCTTA
* * * *
83357529 CATCTCGAGGTCGATGCATGTCCCAGACATGTCTTACACAAGCACTCGTCTCAATGCTGATGCCA
1 CATCTCGAGGCCGACGCATGGCCCAGACATGTCTTACACAAGCACTCATCTCAATGCTGATGCCA
* * * * * *
83357594 TGTCCTAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGT-TCCAAACATGTCTT
66 TGTCCTAGACATAGTCTTACACTGACTATCATAATGTAGCCGATGCATGTCT-TATACATGTCTT
83357658 ACACT
130 ACACT
83357663 AGTTCACACA
Statistics
Matches: 114, Mismatches: 15, Indels: 9
0.83 0.11 0.07
Matches are distributed among these distances:
138 1 0.01
139 44 0.39
140 68 0.60
141 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (140 bp):
CATCTCGAGGCCGACGCATGGCCCAGACATGTCTTACACAAGCACTCATCTCAATGCTGATGCCA
TGTCCTAGACATAGTCTTACACTGACTATCATAATGTAGCCGATGCATGTCTTATACATGTCTTA
CACTGGCTTA
Found at i:83357606 original size:186 final size:186
Alignment explanation
Indices: 83357143--83357620 Score: 570
Period size: 186 Copynumber: 2.6 Consensus size: 186
83357133 CAGACACGGA
* * ** * * * * *
83357143 CTTACACTGGCTCACATCTTAAGTTGATACTATGTCCCAAACATGGTCTTACACTGA-CTATAAT
1 CTTACACTGGCTTACATCTCAAGTCAATGCCATGTCCCAGACATGGTCTTACACTAAGC-ATCAT
* * * *
83357207 CTCGTAGCCGATGCATGTCCCAAACATGTCCTACACTGGCTTACGTCTCAAGTCGATGCCATGTC
65 CTCATAGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCAAGTCGATGCCATGTC
* * *
83357272 CCAGACATGGCCTTACACTGACTATCATTTTGTAGCTGATGCATGTCCTAGACATGT
130 CCAGACATAGCCTTACACTGACTATCATCTTGTAGCCGATGCATGTCCTAGACATGT
* * * * *
83357329 CTTATACTGGCTTACGTCTCAAGTCAATGCCATGTCCCAGACATGGTTTTACACTGAGTATCATC
1 CTTACACTGGCTTACATCTCAAGTCAATGCCATGTCCCAGACATGGTCTTACACTAAGCATCATC
* * *
83357394 TCGTAGCCGACGCATGGCCCAGACATGTCTTACACTGGCTTACATCTCAAGTCGATGCCATGTCC
66 TCATAGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCAAGTCGATGCCATGTCC
* * * *
83357459 TAGACATAGTCTTACACTGACTATCATCTTGTAGCCGATGCATGTCTTATACATGT
131 CAGACATAGCCTTACACTGACTATCATCTTGTAGCCGATGCATGTCCTAGACATGT
* * *
83357515 CTTACACTGGCTTACATCTCGAGGTCGATG-CATGTCCCAGACAT-GTCTTACAC-AAGCACTCG
1 CTTACACTGGCTTACATCTC-AAGTCAATGCCATGTCCCAGACATGGTCTTACACTAAGCA-TCA
* *
83357577 TCTCA-ATGCTGATGCCATGTCCTAGACATGGTCTTACACTGGCT
64 TCTCATA-GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT
83357621 CTCATAATGT
Statistics
Matches: 249, Mismatches: 37, Indels: 11
0.84 0.12 0.04
Matches are distributed among these distances:
184 4 0.02
185 19 0.08
186 205 0.82
187 21 0.08
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (186 bp):
CTTACACTGGCTTACATCTCAAGTCAATGCCATGTCCCAGACATGGTCTTACACTAAGCATCATC
TCATAGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCAAGTCGATGCCATGTCC
CAGACATAGCCTTACACTGACTATCATCTTGTAGCCGATGCATGTCCTAGACATGT
Found at i:83364736 original size:47 final size:47
Alignment explanation
Indices: 83364674--83364801 Score: 159
Period size: 47 Copynumber: 2.7 Consensus size: 47
83364664 CTTTACATAA
* * * *
83364674 TGATGCCATAGCCCAGCTATGGTCTTACAC-GTAATCACATATCTCAC
1 TGATGCCATATCCCAGATATGGTCTTACACAG-AAGCACATATCACAC
* * *
83364721 TGATGTCATATCCCAGATATGGTCTTATACAGAAGCATATATCACAC
1 TGATGCCATATCCCAGATATGGTCTTACACAGAAGCACATATCACAC
* *
83364768 CGATGCCATATCCCAGATATGGTCTTATACAGAA
1 TGATGCCATATCCCAGATATGGTCTTACACAGAA
83364802 ATCACTTGTC
Statistics
Matches: 71, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
47 70 0.99
48 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.28
Consensus pattern (47 bp):
TGATGCCATATCCCAGATATGGTCTTACACAGAAGCACATATCACAC
Found at i:83364815 original size:7 final size:7
Alignment explanation
Indices: 83364803--83364831 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
83364793 TATACAGAAA
83364803 TCACTTG
1 TCACTTG
83364810 TCACTTG
1 TCACTTG
83364817 TCACTTG
1 TCACTTG
83364824 TCACTTG
1 TCACTTG
83364831 T
1 T
83364832 AGCCAAAGCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.14, C:0.28, G:0.14, T:0.45
Consensus pattern (7 bp):
TCACTTG
Found at i:83364865 original size:31 final size:31
Alignment explanation
Indices: 83364830--83365038 Score: 292
Period size: 31 Copynumber: 6.7 Consensus size: 31
83364820 CTTGTCACTT
* *
83364830 GTAGCCAAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* ** *
83364861 GTAGCTGGTGCTACCATTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
83364892 GTAGCCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
** *
83364923 GTAGTTGAAGCTACCACTTTTCACTGATTAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
83364954 GTAGCAGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
83364985 GTAGCTGAAACTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
83365016 GTAGCTGAAGCTACCACTTTTCA
1 GTAGCCGAAGCTACCACTTTTCA
83365039 GTTGTCATTT
Statistics
Matches: 159, Mismatches: 19, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 159 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.29
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:83365108 original size:49 final size:49
Alignment explanation
Indices: 83365016--83365191 Score: 273
Period size: 49 Copynumber: 3.5 Consensus size: 49
83365006 CACTGATCAG
* * * *
83365016 GTAGCTGAAGCTACCACTTTTCAGTTGTCATTTGCCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCA-CT-TCATTTGCCATTGATCAGATAAGT
83365067 GTAGCCGAAGCTATCACTTATCACTTCATTTGCCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTCATTTGCCATTGATCAGATAAGT
83365116 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCC-TTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCAC-TTCATTTG-CCATTGATCAGATAAGT
83365166 GTAGCCGAAGCTATCACTTATCACTT
1 GTAGCCGAAGCTATCACTTATCACTT
83365192 GTTTCCATGG
Statistics
Matches: 119, Mismatches: 4, Indels: 6
0.92 0.03 0.05
Matches are distributed among these distances:
49 50 0.42
50 47 0.39
51 22 0.18
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.34
Consensus pattern (49 bp):
GTAGCCGAAGCTATCACTTATCACTTCATTTGCCATTGATCAGATAAGT
Found at i:83365166 original size:50 final size:50
Alignment explanation
Indices: 83365016--83365191 Score: 284
Period size: 50 Copynumber: 3.5 Consensus size: 50
83365006 CACTGATCAG
* * * *
83365016 GTAGCTGAAGCTACCACTTTTCAGTTGTCATTTGCCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTT-TCATTTGCCATTGATCAGATAAGT
83365067 GTAGCCGAAGCTATCACTTATCAC-TTCATTTGCCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGCCATTGATCAGATAAGT
83365116 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCC-TTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTG-CCATTGATCAGATAAGT
83365166 GTAGCCGAAGCTATCACTTATCACTT
1 GTAGCCGAAGCTATCACTTATCACTT
83365192 GTTTCCATGG
Statistics
Matches: 119, Mismatches: 4, Indels: 5
0.93 0.03 0.04
Matches are distributed among these distances:
49 48 0.40
50 49 0.41
51 22 0.18
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.34
Consensus pattern (50 bp):
GTAGCCGAAGCTATCACTTATCACTTTCATTTGCCATTGATCAGATAAGT
Found at i:83366251 original size:17 final size:18
Alignment explanation
Indices: 83366217--83366253 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
83366207 CAATTAACCC
*
83366217 CTCAATTAAGATAATTTT
1 CTCAATTAACATAATTTT
83366235 CTCAATTAACA-AATTTT
1 CTCAATTAACATAATTTT
83366252 CT
1 CT
83366254 AGACATTATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 8 0.44
18 10 0.56
ACGTcount: A:0.38, C:0.16, G:0.03, T:0.43
Consensus pattern (18 bp):
CTCAATTAACATAATTTT
Found at i:83368451 original size:47 final size:45
Alignment explanation
Indices: 83368377--83368734 Score: 216
Period size: 47 Copynumber: 7.7 Consensus size: 45
83368367 GGGTAAGGTA
* *
83368377 TCGATGCCATGTCCCAGACACGGTCTTATACTAGCTCACATCTTAAG
1 TCGATGCCATGTCCCAGACA-TGTCTTACACTAGCT-ACATCTTAAG
* *
83368424 TCGATGCCATGTCCCAAACATGCTCTTACACT-GACTATCATCTTGTAG
1 TCGATGCCATGTCCCAGACATG-TCTTACACTAG-CTA-CATCTT-AAG
* * ** * *
83368472 CCGATG-CATGTCCCAAACATGTCTTACACTAGCTTATGTCTCAAT
1 TCGATGCCATGTCCCAGACATGTCTTACACTAGC-TACATCTTAAG
* * *
83368517 TTGATTCCATGTCCCAGACATGGTTTTACACT-GACTATCATCTCGT-AG
1 TCGATGCCATGTCCCAGACAT-GTCTTACACTAG-CTA-CATCT--TAAG
* * * * *
83368565 CCGATG-CATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAGG
1 TCGATGCCATGTCCCAGACATGTCTTACACTAGC-TACATCT-TAAG
* *
83368611 TCGATG-CATGTCCCAGACATGTCTTATACTAGC-ACTCGTCTTAATG
1 TCGATGCCATGTCCCAGACATGTCTTACACTAGCTA--CATCTTAA-G
* * * * *
83368657 CCGATGCCATGTCCCGGACATGGGCTTACACTGGCT-C-TCATAATG
1 TCGATGCCATGTCCCAGACAT-GTCTTACACTAGCTACATCTTAA-G
83368702 TGGCCGATG-CATGTCCCAGA-ATGTCTTACACTA
1 T---CGATGCCATGTCCCAGACATGTCTTACACTA
83368735 ACTCACGCAA
Statistics
Matches: 245, Mismatches: 42, Indels: 50
0.73 0.12 0.15
Matches are distributed among these distances:
44 1 0.00
45 21 0.09
46 91 0.37
47 106 0.43
48 26 0.11
ACGTcount: A:0.23, C:0.28, G:0.18, T:0.30
Consensus pattern (45 bp):
TCGATGCCATGTCCCAGACATGTCTTACACTAGCTACATCTTAAG
Found at i:83368621 original size:93 final size:92
Alignment explanation
Indices: 83368378--83368636 Score: 322
Period size: 93 Copynumber: 2.8 Consensus size: 92
83368368 GGTAAGGTAT
* * * * * *
83368378 CGATGCCATGTCCCAGACACGGTCTTATACTAGCTCACATCTTAAGTCGATGCCATGTCCCAAAC
1 CGATG-CATGTCCCAGACA-TGTCTTACACTAGCTTACGTCTCAAGTCGATG-CATGTCCCAGAC
*
83368443 ATGCTCTTACACTGACTATCATCTTGTAGC
63 ATGCTCTTACACTGACTATCATCTCGTAGC
* * * * *
83368473 CGATGCATGTCCCAAACATGTCTTACACTAGCTTATGTCTCAATTTGATTCCATGTCCCAGACAT
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTTACGTCTCAAGTCGA-TGCATGTCCCAGACAT
* *
83368538 GGTTTTACACTGACTATCATCTCGTAGC
65 GCTCTTACACTGACTATCATCTCGTAGC
* *
83368566 CGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAGGTCGATGCATGTCCCAGACAT
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTTACGTCTC-AAGTCGATGCATGTCCCAGACAT
83368631 G-TCTTA
65 GCTCTTA
83368637 TACTAGCACT
Statistics
Matches: 140, Mismatches: 22, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
92 4 0.03
93 114 0.81
94 17 0.12
95 5 0.04
ACGTcount: A:0.24, C:0.29, G:0.17, T:0.30
Consensus pattern (92 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTTACGTCTCAAGTCGATGCATGTCCCAGACATG
CTCTTACACTGACTATCATCTCGTAGC
Found at i:83368668 original size:93 final size:89
Alignment explanation
Indices: 83368378--83368733 Score: 263
Period size: 93 Copynumber: 3.8 Consensus size: 89
83368368 GGTAAGGTAT
* * * * *
83368378 CGATGCCATGTCCCAGACACGGTCTTATACTAGCTCACATCTTAAGTCGATGCCATGTCCCAAAC
1 CGATG-CATGTCCCAGACA-TGTCTTACACTAGCTTACATCTGAAGTCGATG-CATGTCCCAGAC
*
83368443 ATGCTCTTACACTG-ACTATCATCTTGTAGC
63 ATG-TCTTACACTGCAC-ATC-TCTTAT-GC
* ** * * * *
83368473 CGATGCATGTCCCAAACATGTCTTACACTAGCTTATGTCTCAATTTGATTCCATGTCCCAGACAT
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTGAAGTCGA-TGCATGTCCCAGACAT
* *
83368538 GGTTTTACACTGACTATCATCTCGTA-GC
65 -GTCTTACACTG-C-A-CATCTCTTATGC
* * *
83368566 CGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAGGTCGATGCATGTCCCAGACAT
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTTACATCT-GAAGTCGATGCATGTCCCAGACAT
*
83368631 GTCTTATACTAGCAC-TCGTCTTAATGC
65 GTCTTACACT-GCACATC-TCTT-ATGC
* * * * ** *
83368658 CGATGCCATGTCCCGGACATGGGCTTACACTGGCTCT-CATAATGTGGCCGATGCATGTCCCAGA
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCT-TACAT-CTGAAGTCGATGCATGTCCCAGA
83368722 -ATGTCTTACACT
62 CATGTCTTACACT
83368734 AACTCACGCA
Statistics
Matches: 214, Mismatches: 32, Indels: 32
0.77 0.12 0.12
Matches are distributed among these distances:
89 2 0.01
90 4 0.02
91 2 0.01
92 16 0.07
93 123 0.57
94 52 0.24
95 10 0.05
96 4 0.02
97 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (89 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTGAAGTCGATGCATGTCCCAGACATG
TCTTACACTGCACATCTCTTATGC
Found at i:83368669 original size:140 final size:137
Alignment explanation
Indices: 83368378--83368733 Score: 357
Period size: 140 Copynumber: 2.6 Consensus size: 137
83368368 GGTAAGGTAT
* * *
83368378 CGATGCCATGTCCCAGACACGGTCTTATACT-AGCTCA-CATCT-TAAGTCGATGCCATGTCCCA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGA-CT-ATCATCTGT-AGCCGATG-CATGTCCCA
* *
83368440 AACATGCTCTTACACTGACTATCATCTTGTAGCCGATGCATGTCCCAAACATGTCTTACACTAGC
62 GACATG-TCTTACACTGACTATCATCTCGTAGCCGATGCATGTCCCAAACATGTCTTACACTAGC
*
83368505 TTATGTCTCAATT
126 -TATGTCTCAATC
* * *
83368518 TGATTCCATGTCCCAGACATGGTTTTACACTGACTATCATCTCGTAGCCGATGCATGTCCCAGAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCT-GTAGCCGATGCATGTCCCAGAC
* * * * *
83368583 ATGTCTTACACTGGCT-TACGTCTCG-AGGTCGATGCATGTCCCAGACATGTCTTATACTAGC-A
65 ATGTCTTACACTGACTAT-CATCTCGTA-GCCGATGCATGTCCCAAACATGTCTTACACTAGCTA
*
83368645 CTCGTCTTAATGC
128 -T-GTCTCAAT-C
* * * * * *
83368658 CGATGCCATGTCCCGGACATGGGCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCCCAGA-
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCAT-CTGTAGCCGATGCATGTCCCAGAC
83368722 ATGTCTTACACT
65 ATGTCTTACACT
83368734 AACTCACGCA
Statistics
Matches: 182, Mismatches: 24, Indels: 21
0.80 0.11 0.09
Matches are distributed among these distances:
137 1 0.01
138 3 0.02
139 68 0.37
140 100 0.55
141 9 0.05
142 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (137 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTGTAGCCGATGCATGTCCCAGACA
TGTCTTACACTGACTATCATCTCGTAGCCGATGCATGTCCCAAACATGTCTTACACTAGCTATGT
CTCAATC
Found at i:83373674 original size:128 final size:128
Alignment explanation
Indices: 83373504--83373738 Score: 400
Period size: 128 Copynumber: 1.8 Consensus size: 128
83373494 ATGTTAGTTA
* *
83373504 TCTATAGTTGAATAAAATGAGTCTTTTTATGATGTTTCTTGACCAATTAGGCCAATTCAAATCTA
1 TCTATAATTGAATAAAATGAGTCTTTTTATGATGTTTCTTGACCAATTAGGCCAATTCAAACCTA
*
83373569 ATGAATTCTAACGAGTTGAGGTAGCT-TGCAATAAATTACTTGCACACTAATGGATAAAATAAG
66 ATGAATTCTAACGAGTTGAGGTAG-TGTGCAAGAAATTACTTGCACACTAATGGATAAAATAAG
* *
83373632 TCTATAATTGAATAAAATTAGTCTTTTTATGATGTTTCTTGACCAATTAGGCCAATTCAAGCCTA
1 TCTATAATTGAATAAAATGAGTCTTTTTATGATGTTTCTTGACCAATTAGGCCAATTCAAACCTA
*
83373697 ATGAATTCTAACGAGTTGATGTAGTGTGCAAGAAATTACTTG
66 ATGAATTCTAACGAGTTGAGGTAGTGTGCAAGAAATTACTTG
83373739 AACCAAATAA
Statistics
Matches: 100, Mismatches: 6, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
127 1 0.01
128 99 0.99
ACGTcount: A:0.34, C:0.13, G:0.17, T:0.36
Consensus pattern (128 bp):
TCTATAATTGAATAAAATGAGTCTTTTTATGATGTTTCTTGACCAATTAGGCCAATTCAAACCTA
ATGAATTCTAACGAGTTGAGGTAGTGTGCAAGAAATTACTTGCACACTAATGGATAAAATAAG
Found at i:83375205 original size:41 final size:41
Alignment explanation
Indices: 83375153--83375244 Score: 148
Period size: 41 Copynumber: 2.2 Consensus size: 41
83375143 GGCCTGGCAT
83375153 ACGCCCGTGTGCCTGGACCGTGTCTTTCACACAGCCATGAC
1 ACGCCCGTGTGCCTGGACCGTGTCTTTCACACAGCCATGAC
* * * *
83375194 ACGCTCGTGTGCCTGGCCCGTGTCTTTCATACGGCCATGAC
1 ACGCCCGTGTGCCTGGACCGTGTCTTTCACACAGCCATGAC
83375235 ACGCCCGTGT
1 ACGCCCGTGT
83375245 CCTAGCCCGT
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 46 1.00
ACGTcount: A:0.14, C:0.36, G:0.26, T:0.24
Consensus pattern (41 bp):
ACGCCCGTGTGCCTGGACCGTGTCTTTCACACAGCCATGAC
Done.