Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 263 of 318
Found at i:83376369 original size:46 final size:46
Alignment explanation
Indices: 83376261--83376477 Score: 166
Period size: 46 Copynumber: 4.7 Consensus size: 46
83376251 TATCTGTGCC
* * *
83376261 GATGCCATGTCCCAGACATGATCTTACACTTA-C--ACATCTCGTA-GCC
1 GATG-CATGTCCCAGACATG-TCTTACAC-TAGCTTACGTCTC-AAGGCT
83376307 GATGCATGTCCCAGACATGTCTTACACTAGCTTACGTCTCAAGGCT
1 GATGCATGTCCCAGACATGTCTTACACTAGCTTACGTCTCAAGGCT
* * *
83376353 GATGCATGTCCTAGACATGTCTTACACTAGC--ACTTGTCTCAATGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTTAC--GTCTCAAGGCT
* * * * *
83376399 AATGCCATGTCCCAGGCATGGTCTT-CACTGGCTT---TCATGATGTGACT
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCTTACGTC-TCAAG-G-CT
83376446 GATGCATGTCCCAGACATGTCTTACACTAGCT
1 GATGCATGTCCCAGACATGTCTTACACTAGCT
83376478 GACACAAGTG
Statistics
Matches: 140, Mismatches: 17, Indels: 28
0.76 0.09 0.15
Matches are distributed among these distances:
43 2 0.01
44 13 0.09
45 23 0.16
46 75 0.54
47 22 0.16
48 5 0.04
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.29
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTTACGTCTCAAGGCT
Found at i:83379949 original size:55 final size:52
Alignment explanation
Indices: 83379888--83380033 Score: 148
Period size: 55 Copynumber: 2.7 Consensus size: 52
83379878 GTAAGGTTTT
* *
83379888 TAAGGCAAGGTTATCATGTAAGACTATGTCAAGACATGACATTAATAATTTTCTA
1 TAAGGCAAGG-TACCATGTAAGACTATGTCAAGACATGACATTAATAA-GTTC-A
* * * * ** *
83379943 TAAGGCAAAGGTCCCATGTAAGACTATGCCAAGGCATGGCATTGGTGAGTTCA
1 TAAGGC-AAGGTACCATGTAAGACTATGTCAAGACATGACATTAATAAGTTCA
* *
83379996 TAAGGCAAGGATACCATGTAAGACCATGTCGAGACATG
1 TAAGGCAAGG-TACCATGTAAGACTATGTCAAGACATG
83380034 GTAATGGTAA
Statistics
Matches: 75, Mismatches: 14, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
52 4 0.05
53 29 0.39
54 3 0.04
55 35 0.47
56 4 0.05
ACGTcount: A:0.35, C:0.16, G:0.23, T:0.25
Consensus pattern (52 bp):
TAAGGCAAGGTACCATGTAAGACTATGTCAAGACATGACATTAATAAGTTCA
Found at i:83384679 original size:26 final size:27
Alignment explanation
Indices: 83384650--83384703 Score: 76
Period size: 26 Copynumber: 2.0 Consensus size: 27
83384640 AGAATTGCCG
83384650 AATATTTACTGA-TCACAAAAG-TTTGA
1 AATATTTACTGACTCA-AAAAGATTTGA
*
83384676 AATATTTTCTGACTCAAAAAGATTTGA
1 AATATTTACTGACTCAAAAAGATTTGA
83384703 A
1 A
83384704 TTTGAGGCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
26 16 0.64
27 9 0.36
ACGTcount: A:0.43, C:0.11, G:0.11, T:0.35
Consensus pattern (27 bp):
AATATTTACTGACTCAAAAAGATTTGA
Found at i:83387491 original size:55 final size:56
Alignment explanation
Indices: 83387409--83387665 Score: 238
Period size: 55 Copynumber: 4.8 Consensus size: 56
83387399 ATTAGGGTTT
*
83387409 AAGGATACCATGTAAAACCATGCCAAGACATGGAAATTGGTAAGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGAAATTGGTAAGGTTTCATAAGGC
* * * *
83387464 AAGGATATCATGTAAGACCATGTCAAGACAT-GACATTGAT-AGGTTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGAAATTGGTAAGGTTTC-ATAAGGC
* * * * * *
83387519 AAATG-TCCCATGTAAGACCATACCAAGGCAT-GACATTGGTGA-G-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGAAATTGGTAAGGTTTCATAAGGC
* * *
83387572 AAGGATACCATGTAAGACCATGTCGAGACATGGCAA-TGGTAA-GTTTC--AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGAAATTGGTAAGGTTTCATAAGGC
* * *
83387621 AAGGATACCACGTAAGACCATGACAAGTCATGGAAA-TGGTAAGGT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGAAATTGGTAAGGT
83387666 ACCCTTGTAT
Statistics
Matches: 168, Mismatches: 26, Indels: 21
0.78 0.12 0.10
Matches are distributed among these distances:
49 37 0.22
50 2 0.01
52 5 0.03
53 41 0.24
54 15 0.09
55 64 0.38
56 4 0.02
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.23
Consensus pattern (56 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGAAATTGGTAAGGTTTCATAAGGC
Found at i:83387618 original size:108 final size:110
Alignment explanation
Indices: 83387416--83387618 Score: 277
Period size: 108 Copynumber: 1.9 Consensus size: 110
83387406 TTTAAGGATA
* *
83387416 CCATGTAAAACCATGCCAAGACATGGAAATTGGTAAGGTTTCTAAGGCAAGGATATCATGTAAGA
1 CCATGTAAAACCATACCAAGACATGGAAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
* *
83387481 CCATGTCAAGACATGACATTGATAGGTTTCTATAAGGCAAATGTC
66 CCATGTCAAGACATGACAATGATAAGTTTCTATAAGGCAAATGTC
* * * *
83387526 CCATGTAAGACCATACCAAGGCAT-GACATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAAACCATACCAAGACATGGAAATTGGTAAGGTTTC-TAAGGCAAGGATACCATGTAAG
* * *
83387588 ACCATGTCGAGACATGGCAATGGTAAGTTTC
65 ACCATGTCAAGACATGACAATGATAAGTTTC
83387619 AAAAGGATAC
Statistics
Matches: 81, Mismatches: 11, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
107 3 0.04
108 48 0.59
109 9 0.11
110 21 0.26
ACGTcount: A:0.35, C:0.18, G:0.23, T:0.24
Consensus pattern (110 bp):
CCATGTAAAACCATACCAAGACATGGAAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
CCATGTCAAGACATGACAATGATAAGTTTCTATAAGGCAAATGTC
Found at i:83394317 original size:47 final size:47
Alignment explanation
Indices: 83394251--83394426 Score: 189
Period size: 47 Copynumber: 3.7 Consensus size: 47
83394241 ATATCTATAC
* *
83394251 CGATGCCATGTCCCAGACATGGTCTTACACTAG-TTTACGTCTCGAGGT
1 CGATGCCATGTCCCAGACAT-GTCTTACACTAGCTCT-CATCTCGAGGT
* * * * *
83394299 CGATG-CATGTCCCAGACATGTCCTACACAAGCACTCATCTCAATGT
1 CGATGCCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCGAGGT
* * * *
83394345 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGC
1 CGATGCCATGTCCCAGACAT-GTCTTACACTAGCTCTCAT-CTCGAGGT
83394393 CGATG-CATGTCCCAGACATGTCTTACACTAGCTC
1 CGATGCCATGTCCCAGACATGTCTTACACTAGCTC
83394427 ACACAAGTGA
Statistics
Matches: 107, Mismatches: 17, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
46 37 0.35
47 43 0.40
48 26 0.24
49 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCGAGGT
Found at i:83398798 original size:22 final size:22
Alignment explanation
Indices: 83398769--83398835 Score: 82
Period size: 22 Copynumber: 3.0 Consensus size: 22
83398759 TGCACTAATG
83398769 AACAGAGAGCACTAAAGTGCTA
1 AACAGAGAGCACTAAAGTGCTA
*
83398791 TACAGAGAGCAC-AAATGTGCTA
1 AACAGAGAGCACTAAA-GTGCTA
** *
83398813 AATGGAGAGCACTAATGTGCTA
1 AACAGAGAGCACTAAAGTGCTA
83398835 A
1 A
83398836 TAATCAGAGG
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
21 3 0.08
22 33 0.87
23 2 0.05
ACGTcount: A:0.42, C:0.16, G:0.24, T:0.18
Consensus pattern (22 bp):
AACAGAGAGCACTAAAGTGCTA
Found at i:83400125 original size:10 final size:10
Alignment explanation
Indices: 83400110--83400135 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
83400100 TAATTTCTCC
83400110 CTTTCTTTTT
1 CTTTCTTTTT
83400120 CTTTCTTTTT
1 CTTTCTTTTT
83400130 CTTTCT
1 CTTTCT
83400136 CCCCTGTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (10 bp):
CTTTCTTTTT
Found at i:83400231 original size:15 final size:15
Alignment explanation
Indices: 83400207--83400251 Score: 56
Period size: 15 Copynumber: 3.0 Consensus size: 15
83400197 TGCTTTTAAT
*
83400207 TATATTATATAATAA
1 TATATAATATAATAA
83400222 TATATAATATAAT-A
1 TATATAATATAATAA
*
83400236 TAGTATAATTTAATAA
1 TA-TATAATATAATAA
83400252 CATTTACTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
14 3 0.12
15 22 0.85
16 1 0.04
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.44
Consensus pattern (15 bp):
TATATAATATAATAA
Found at i:83400336 original size:9 final size:9
Alignment explanation
Indices: 83400322--83400351 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
83400312 ATATGTATTT
83400322 CACTATTAC
1 CACTATTAC
*
83400331 CACTATTAT
1 CACTATTAC
83400340 CACTATTAC
1 CACTATTAC
83400349 CAC
1 CAC
83400352 ACAACTGGCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (9 bp):
CACTATTAC
Found at i:83400344 original size:18 final size:17
Alignment explanation
Indices: 83400317--83400351 Score: 61
Period size: 18 Copynumber: 2.0 Consensus size: 17
83400307 ATTCCATATG
83400317 TATTTCACTATTACCAC
1 TATTTCACTATTACCAC
83400334 TATTATCACTATTACCAC
1 TATT-TCACTATTACCAC
83400352 ACAACTGGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.31, C:0.29, G:0.00, T:0.40
Consensus pattern (17 bp):
TATTTCACTATTACCAC
Found at i:83402609 original size:28 final size:27
Alignment explanation
Indices: 83402546--83402615 Score: 131
Period size: 27 Copynumber: 2.6 Consensus size: 27
83402536 ATAGTGAGTC
83402546 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
83402573 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
83402601 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
83402616 GTACCAATTT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 23 0.55
28 19 0.45
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:83403764 original size:26 final size:30
Alignment explanation
Indices: 83403710--83403765 Score: 75
Period size: 28 Copynumber: 2.0 Consensus size: 30
83403700 TGGACACTTT
83403710 TTTTTTCTTTTCTTTGTTTTCATCATATTTC
1 TTTTTTCTTTTCTTTGTTTTCAT-ATATTTC
83403741 TTTTTTC-TTT-TTT-TTTTCAT-TATTT
1 TTTTTTCTTTTCTTTGTTTTCATATATTT
83403766 TATCACCCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
26 5 0.20
28 7 0.28
29 3 0.12
30 3 0.12
31 7 0.28
ACGTcount: A:0.09, C:0.12, G:0.02, T:0.77
Consensus pattern (30 bp):
TTTTTTCTTTTCTTTGTTTTCATATATTTC
Found at i:83408885 original size:40 final size:40
Alignment explanation
Indices: 83408840--83408969 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
83408830 CGGAATACAA
83408840 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
83408880 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
83408920 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
83408960 CCGGATATAA
1 CCGGATATAA
83408970 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:83408984 original size:40 final size:40
Alignment explanation
Indices: 83408840--83408998 Score: 135
Period size: 40 Copynumber: 4.0 Consensus size: 40
83408830 CGGAATACAA
* **
83408840 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
83408880 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
83408920 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * * *
83408960 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAG
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAG
83408999 GGGTATCATT
Statistics
Matches: 95, Mismatches: 21, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
39 2 0.02
40 93 0.98
ACGTcount: A:0.23, C:0.27, G:0.25, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:83416913 original size:39 final size:39
Alignment explanation
Indices: 83416869--83416997 Score: 154
Period size: 40 Copynumber: 3.3 Consensus size: 39
83416859 CGGAATACAA
83416869 CCGGATATAACACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
83416908 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA-CACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
83416948 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATA-ACACTAGCACGAA-TGCCTTCGGGTCTTAGC
83416988 CCGGATATAA
1 CCGGATATAA
83416998 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 10, Indels: 8
0.81 0.11 0.09
Matches are distributed among these distances:
39 12 0.16
40 64 0.84
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (39 bp):
CCGGATATAACACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:83417012 original size:40 final size:40
Alignment explanation
Indices: 83416869--83417034 Score: 153
Period size: 40 Copynumber: 4.2 Consensus size: 40
83416859 CGGAATACAA
**
83416869 CCGGATATAA-CACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
83416908 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
83416948 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * *
83416988 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
83417027 CCGGATAT
1 CCGGATAT
83417035 CATTCAATTT
Statistics
Matches: 104, Mismatches: 19, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
39 24 0.23
40 80 0.77
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:83424038 original size:40 final size:40
Alignment explanation
Indices: 83423993--83424122 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
83423983 CGGAATACAA
83423993 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
83424033 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
83424073 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
83424113 CCGGATATAA
1 CCGGATATAA
83424123 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:83424137 original size:40 final size:40
Alignment explanation
Indices: 83423993--83424156 Score: 145
Period size: 40 Copynumber: 4.1 Consensus size: 40
83423983 CGGAATACAA
* **
83423993 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
83424033 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
83424073 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * * *
83424113 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
83424153 CCGG
1 CCGG
83424157 TATCATTCAA
Statistics
Matches: 100, Mismatches: 21, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
39 2 0.02
40 98 0.98
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:83428947 original size:28 final size:27
Alignment explanation
Indices: 83428884--83428953 Score: 131
Period size: 27 Copynumber: 2.6 Consensus size: 27
83428874 ATAGTGAGTC
83428884 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
83428911 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
83428939 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
83428954 GTACCAATTT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 23 0.55
28 19 0.45
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:83431973 original size:17 final size:17
Alignment explanation
Indices: 83431953--83432006 Score: 56
Period size: 17 Copynumber: 3.2 Consensus size: 17
83431943 AAATGTTGAT
83431953 TTAAGTGAATTGAAATG
1 TTAAGTGAATTGAAATG
* * **
83431970 TTAATTGAAATGTTGAT-
1 TTAAGTGAATTG-AAATG
83431987 TTAAGTGAATTGAAATG
1 TTAAGTGAATTGAAATG
83432004 TTA
1 TTA
83432007 TTTGTTTGAA
Statistics
Matches: 27, Mismatches: 8, Indels: 4
0.69 0.21 0.10
Matches are distributed among these distances:
16 2 0.07
17 23 0.85
18 2 0.07
ACGTcount: A:0.39, C:0.00, G:0.20, T:0.41
Consensus pattern (17 bp):
TTAAGTGAATTGAAATG
Found at i:83431977 original size:12 final size:12
Alignment explanation
Indices: 83431939--83432006 Score: 54
Period size: 12 Copynumber: 6.0 Consensus size: 12
83431929 TGAGAATGAC
*
83431939 ATTGAAATGTTG
1 ATTGAAATGTTA
* *
83431951 ATT-TAA-GTGA
1 ATTGAAATGTTA
83431961 ATTGAAATGTTA
1 ATTGAAATGTTA
*
83431973 ATTGAAATGTTG
1 ATTGAAATGTTA
* *
83431985 ATT-TAA-GTGA
1 ATTGAAATGTTA
83431995 ATTGAAATGTTA
1 ATTGAAATGTTA
83432007 TTTGTTTGAA
Statistics
Matches: 41, Mismatches: 11, Indels: 8
0.68 0.18 0.13
Matches are distributed among these distances:
10 10 0.24
11 8 0.20
12 23 0.56
ACGTcount: A:0.38, C:0.00, G:0.21, T:0.41
Consensus pattern (12 bp):
ATTGAAATGTTA
Found at i:83431979 original size:34 final size:34
Alignment explanation
Indices: 83431939--83432006 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
83431929 TGAGAATGAC
83431939 ATTGAAATGTTGATTTAAGTGAATTGAAATGTTA
1 ATTGAAATGTTGATTTAAGTGAATTGAAATGTTA
83431973 ATTGAAATGTTGATTTAAGTGAATTGAAATGTTA
1 ATTGAAATGTTGATTTAAGTGAATTGAAATGTTA
83432007 TTTGTTTGAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.38, C:0.00, G:0.21, T:0.41
Consensus pattern (34 bp):
ATTGAAATGTTGATTTAAGTGAATTGAAATGTTA
Found at i:83433651 original size:25 final size:25
Alignment explanation
Indices: 83433580--83433653 Score: 112
Period size: 26 Copynumber: 2.9 Consensus size: 25
83433570 AATTTTCTTG
*
83433580 AAATTTTACAAGGGGTAAAATCGTCA
1 AAATTTTACAA-GGGTAAAATTGTCA
83433606 AAATTTTATCAAGGGTAAAATTGTCA
1 AAATTTTA-CAAGGGTAAAATTGTCA
*
83433632 AAATTTTACTAGGGTAAAATTG
1 AAATTTTACAAGGGTAAAATTG
83433654 GGGTTGGAAA
Statistics
Matches: 45, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
25 13 0.29
26 29 0.64
27 3 0.07
ACGTcount: A:0.42, C:0.08, G:0.18, T:0.32
Consensus pattern (25 bp):
AAATTTTACAAGGGTAAAATTGTCA
Found at i:83435353 original size:43 final size:43
Alignment explanation
Indices: 83435216--83435368 Score: 127
Period size: 43 Copynumber: 3.6 Consensus size: 43
83435206 CATAGGATTC
* *
83435216 CGATATGTGATTTCGTGTAAGACCAC-ATCTAGGAC-GTTGGCAT
1 CGATATTTGATTTCGTGTAAGACC-CTATCTGGGACAG-TGGCAT
* * * * * **
83435259 TGAT-TTGAGATTTACGTGTAAGACCATGTCTGGGA-AATCATCAT
1 CGATATT-TGATTT-CGTGTAAGACCCTATCTGGGACAGT-GGCAT
83435303 CG-TATTTGATTTCGTGTAAGACCCTATCTGGGACAGTGGCAT
1 CGATATTTGATTTCGTGTAAGACCCTATCTGGGACAGTGGCAT
* *
83435345 CGATATTTGATTACATGTAAGACC
1 CGATATTTGATTTCGTGTAAGACC
83435369 ACGTTTGGGA
Statistics
Matches: 84, Mismatches: 18, Indels: 16
0.71 0.15 0.14
Matches are distributed among these distances:
42 25 0.30
43 36 0.43
44 23 0.27
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.33
Consensus pattern (43 bp):
CGATATTTGATTTCGTGTAAGACCCTATCTGGGACAGTGGCAT
Found at i:83435378 original size:43 final size:42
Alignment explanation
Indices: 83435300--83435392 Score: 102
Period size: 43 Copynumber: 2.2 Consensus size: 42
83435290 GGGAAATCAT
* *
83435300 CATCGTATTTGATTTCGTGTAAGACCCTATCTGGGACAG-TGG
1 CATCGTATTTGATTACATGTAAGACCCTATCTGGGAC-GTTGG
83435342 CATCGATATTTGATTACATGTAAGACCACGT-T-TGGGACGTTGG
1 CATCG-TATTTGATTACATGTAAGACC-C-TATCTGGGACGTTGG
*
83435385 CATTGTAT
1 CATCGTAT
83435393 GAGCCTTCCA
Statistics
Matches: 44, Mismatches: 3, Indels: 8
0.80 0.05 0.15
Matches are distributed among these distances:
42 9 0.20
43 32 0.73
44 2 0.05
45 1 0.02
ACGTcount: A:0.24, C:0.17, G:0.25, T:0.34
Consensus pattern (42 bp):
CATCGTATTTGATTACATGTAAGACCCTATCTGGGACGTTGG
Found at i:83440653 original size:23 final size:22
Alignment explanation
Indices: 83440617--83440672 Score: 62
Period size: 23 Copynumber: 2.5 Consensus size: 22
83440607 GAAAACTGAG
83440617 AGTGGTGGTCGGCGATGGGGTGC
1 AGTGGTGGTCGGCGAT-GGGTGC
*
83440640 AGTGGTGCGT-GGCGGTGGGTGC
1 AGTGGTG-GTCGGCGATGGGTGC
*
83440662 -GTGGTAGTCGG
1 AGTGGTGGTCGG
83440673 ACGTGGATGG
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
20 2 0.07
21 7 0.24
22 6 0.21
23 12 0.41
24 2 0.07
ACGTcount: A:0.07, C:0.12, G:0.57, T:0.23
Consensus pattern (22 bp):
AGTGGTGGTCGGCGATGGGTGC
Found at i:83456443 original size:15 final size:15
Alignment explanation
Indices: 83456423--83456456 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
83456413 TTGGTTGCAA
83456423 ATTTGGTATGAAATG
1 ATTTGGTATGAAATG
83456438 ATTTGGTATGAAATG
1 ATTTGGTATGAAATG
83456453 ATTT
1 ATTT
83456457 AGTTTGAACT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.24, T:0.44
Consensus pattern (15 bp):
ATTTGGTATGAAATG
Found at i:83456464 original size:15 final size:15
Alignment explanation
Indices: 83456423--83456464 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
83456413 TTGGTTGCAA
*
83456423 ATTTGGTATGAAATG
1 ATTTAGTATGAAATG
*
83456438 ATTTGGTATGAAATG
1 ATTTAGTATGAAATG
*
83456453 ATTTAGTTTGAA
1 ATTTAGTATGAA
83456465 CTTGTAGGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.33, C:0.00, G:0.24, T:0.43
Consensus pattern (15 bp):
ATTTAGTATGAAATG
Found at i:83474305 original size:34 final size:34
Alignment explanation
Indices: 83474267--83474334 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
83474257 GTAAATAACA
83474267 AGATAATCCGAGTTGAGTCTACTGACTTGAATGG
1 AGATAATCCGAGTTGAGTCTACTGACTTGAATGG
83474301 AGATAATCCGAGTTGAGTCTACTGACTTGAATGG
1 AGATAATCCGAGTTGAGTCTACTGACTTGAATGG
83474335 GTTGCCAGCT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.29
Consensus pattern (34 bp):
AGATAATCCGAGTTGAGTCTACTGACTTGAATGG
Found at i:83483090 original size:53 final size:52
Alignment explanation
Indices: 83482906--83483113 Score: 202
Period size: 55 Copynumber: 3.9 Consensus size: 52
83482896 ATTAGGCTTT
* * * * *
83482906 AAGGATACGATGTAAGACCATGCCATGGCATGGAAATTGGTAAGGTTTCTAAGGT
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-CATTGGTAA-G-TTCTAAGGC
** *
83482961 AAGGATACCATGTAAGACCATGTTAAGACATGGCATTGATAAGTTACTGTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-C--TAAGGC
* * *
83483016 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTC-TAAGGC
* * * *
83483069 CAGGATACCATGTAAGACCATGTCGAGACATGGCAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT
83483114 TCAAAAGGAT
Statistics
Matches: 126, Mismatches: 22, Indels: 12
0.79 0.14 0.08
Matches are distributed among these distances:
52 5 0.04
53 42 0.33
54 8 0.06
55 67 0.53
56 4 0.03
ACGTcount: A:0.33, C:0.16, G:0.27, T:0.24
Consensus pattern (52 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTAAGGC
Found at i:83483091 original size:108 final size:110
Alignment explanation
Indices: 83482915--83483113 Score: 287
Period size: 108 Copynumber: 1.8 Consensus size: 110
83482905 TAAGGATACG
* *
83482915 ATGTAAGACCATGCCATGGCATGGAAATTGGTAAGGTTTCTAAGGTAAGGATACCATGTAAGACC
1 ATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGACC
* *
83482980 ATGTTAAGACATGGCATTGATAAGTTACTGTAAGGCAAAGGTCCC
66 ATGTCAAGACATGGCAATGATAAGTTACTGTAAGGCAAAGGTCCC
* * *
83483025 ATGTAAGACCATGCCAAGGCATGG-CATTGGTGA-G-TTCATAAGGCCAGGATACCATGTAAGAC
1 ATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTC-TAAGGCAAGGATACCATGTAAGAC
* *
83483087 CATGTCGAGACATGGCAATGGTAAGTT
65 CATGTCAAGACATGGCAATGATAAGTT
83483114 TCAAAAGGAT
Statistics
Matches: 79, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
107 3 0.04
108 46 0.58
109 7 0.09
110 23 0.29
ACGTcount: A:0.33, C:0.17, G:0.27, T:0.24
Consensus pattern (110 bp):
ATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGACC
ATGTCAAGACATGGCAATGATAAGTTACTGTAAGGCAAAGGTCCC
Found at i:83483372 original size:16 final size:16
Alignment explanation
Indices: 83483351--83483381 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
83483341 ATAAATTTGA
83483351 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
83483367 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
83483382 AGTGAAGAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:83488476 original size:30 final size:30
Alignment explanation
Indices: 83488442--83488499 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
83488432 CATGACAATG
83488442 ACACACAGACGTGTAG-TCTACCCGTGTGTC
1 ACACACAGACGTGTAGAT-TACCCGTGTGTC
* * *
83488472 ACACACGGGCGTGTGGATTACCCGTGTG
1 ACACACAGACGTGTAGATTACCCGTGTG
83488500 GAAGTGCTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 23 0.96
31 1 0.04
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (30 bp):
ACACACAGACGTGTAGATTACCCGTGTGTC
Found at i:83494586 original size:39 final size:40
Alignment explanation
Indices: 83494422--83494588 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
83494412 AAATTGAATG
* * * * **
83494422 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-GAGTGATT
* * * **
83494462 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
* * *
83494502 ATATCCGGGCTAAGATCCGAAGGCATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
*
83494542 CTATCCGGGCTAAGA-CCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGATT
83494581 ATATCCGG
1 ATATCCGG
83494589 TTATATTCCG
Statistics
Matches: 104, Mismatches: 21, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
38 1 0.01
39 27 0.26
40 76 0.73
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
Found at i:83499838 original size:40 final size:40
Alignment explanation
Indices: 83499779--83499920 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
83499769 AAATTGAATG
* * *
83499779 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
83499819 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
83499859 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
83499899 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
83499921 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:83499921 original size:40 final size:39
Alignment explanation
Indices: 83499818--83499946 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
83499808 TGCTGGAAAT
* * *
83499818 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
83499858 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
83499898 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
83499938 TATATCCGG
1 TATATCCGG
83499947 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:83504300 original size:43 final size:42
Alignment explanation
Indices: 83504209--83504313 Score: 113
Period size: 43 Copynumber: 2.5 Consensus size: 42
83504199 ATCGATTATG
* * * *
83504209 TGTAAGACCATGTCTGGGACATCAGCATTGTATTTGATTTCG
1 TGTAAGACCATGTCTGGGACATCAGCATCGTATTTGACTACA
* *
83504251 TGTAAGACCCTGTCTGGGACAGT-GGCATCGATATTTGACTACA
1 TGTAAGACCATGTCTGGGACA-TCAGCATCG-TATTTGACTACA
* *
83504294 TGTAAGACCACGTCTAGGAC
1 TGTAAGACCATGTCTGGGAC
83504314 GTTGGCATTG
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
42 25 0.48
43 27 0.52
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.30
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACATCAGCATCGTATTTGACTACA
Found at i:83507450 original size:40 final size:40
Alignment explanation
Indices: 83507391--83507532 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
83507381 AAATTGAATG
* * *
83507391 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
83507431 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
83507471 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
83507511 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
83507533 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:83507533 original size:40 final size:39
Alignment explanation
Indices: 83507430--83507558 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
83507420 TGCTGGAAAT
* * *
83507430 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
83507470 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
83507510 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
83507550 TATATCCGG
1 TATATCCGG
83507559 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:83515454 original size:40 final size:40
Alignment explanation
Indices: 83515388--83515554 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
83515378 AAATTGAATG
* * *
83515388 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
83515427 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
83515467 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
83515507 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
83515547 ATATCCGG
1 ATATCCGG
83515555 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:83527466 original size:39 final size:40
Alignment explanation
Indices: 83527420--83527641 Score: 342
Period size: 40 Copynumber: 5.6 Consensus size: 40
83527410 CTCACTCAAA
*
83527420 TGCCTTCGGGACTTACCCCGGTTAT-GTAACTCGCACAAT
1 TGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAT
83527459 TGCCTTC-GGACTTAGCCCGGTTATAGTAACTCGCACAAT
1 TGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAT
* * *
83527498 TGCCTTCGGGACTTGGCCCGATTATAGTAACTCGCACAAA
1 TGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAT
* * *
83527538 TGCCTTCGGGACTTGGCCCGATTATAGTAACTCGCACAAA
1 TGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAT
* *
83527578 TGCCTTCGGGACTTAGCCCGGATATAGTAACTCGTACAAT
1 TGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAT
83527618 TGCCTTCGGG-CTTAGCCCGGTTAT
1 TGCCTTCGGGACTTAGCCCGGTTAT
83527642 CAATCCGAAT
Statistics
Matches: 171, Mismatches: 10, Indels: 4
0.92 0.05 0.02
Matches are distributed among these distances:
38 16 0.09
39 41 0.24
40 114 0.67
ACGTcount: A:0.22, C:0.28, G:0.23, T:0.27
Consensus pattern (40 bp):
TGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAT
Found at i:83529617 original size:40 final size:40
Alignment explanation
Indices: 83529526--83529672 Score: 133
Period size: 40 Copynumber: 3.7 Consensus size: 40
83529516 TGAATGATAC
* * * ** *
83529526 CCGGGCTAAGCCCCGAAGACAATTATGCG-GAAATTA-TAA
1 CCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCA-TACTAT
* *
83529565 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC-AT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCGAGT--CATACTAT
*
83529605 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATTCTAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATACTAT
*
83529645 CCGGGCTAAGACCCGAAGGCATTTGTGC
1 CCGGGCTAAGACCCGAAGGCAATTGTGC
83529673 AAATCGTGAT
Statistics
Matches: 88, Mismatches: 12, Indels: 15
0.77 0.10 0.13
Matches are distributed among these distances:
38 1 0.01
39 29 0.33
40 56 0.64
41 2 0.02
ACGTcount: A:0.27, C:0.25, G:0.28, T:0.20
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATACTAT
Found at i:83529686 original size:40 final size:39
Alignment explanation
Indices: 83529560--83529704 Score: 137
Period size: 40 Copynumber: 3.6 Consensus size: 39
83529550 ATGCGGAAAT
* * * * *
83529560 TATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCG
* * * *
83529599 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAT
1 -TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTC-G
* *
83529640 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCG
* * *
83529679 TGATATCCGGGTTAAGTCCCGTAGGC
1 T-ATATCCGGGCTAAGACCCGAAGGC
83529705 CTTGCGTCGG
Statistics
Matches: 85, Mismatches: 18, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
39 1 0.01
40 84 0.99
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCG
Found at i:83531565 original size:37 final size:37
Alignment explanation
Indices: 83531515--83531605 Score: 164
Period size: 37 Copynumber: 2.4 Consensus size: 37
83531505 TTATTACGAA
83531515 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
83531552 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
83531589 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
83531606 TTTCCAAGTT
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
37 47 0.90
38 5 0.10
ACGTcount: A:0.25, C:0.33, G:0.19, T:0.23
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:83531741 original size:46 final size:48
Alignment explanation
Indices: 83531645--83531842 Score: 337
Period size: 48 Copynumber: 4.2 Consensus size: 48
83531635 TGTTACAACA
*
83531645 TTCACATTAGCCATTCGGCTTTACCACACATACACATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACACATCACACATATAT
*
83531693 TTCACATTAGCCATTCGGCTTTA-C-CATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACACATCACACATATAT
*
83531739 TTCACATTAGCCCTTCGGCTTTACCACATATACACATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACACATCACACATATAT
* *
83531787 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATGT
1 TTCACATTAGCCATTCGGCTTTACCACATATACACATCACACATATAT
83531835 TTCACATT
1 TTCACATT
83531843 CATCACATCG
Statistics
Matches: 141, Mismatches: 7, Indels: 4
0.93 0.05 0.03
Matches are distributed among these distances:
46 42 0.30
47 2 0.01
48 97 0.69
ACGTcount: A:0.32, C:0.29, G:0.07, T:0.33
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACACATCACACATATAT
Found at i:83531748 original size:94 final size:96
Alignment explanation
Indices: 83531645--83531842 Score: 355
Period size: 94 Copynumber: 2.1 Consensus size: 96
83531635 TGTTACAACA
83531645 TTCACATTAGCCATTCGGCTTTACCACACATACACATCACACATATATTTCACATTAGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACACATACACATCACACATATATTTCACATTAGCCATTCG
83531710 GCTTTA-C-CATATACATATCACACATATAT
66 GCTTTACCACATATACATATCACACATATAT
* *
83531739 TTCACATTAGCCCTTCGGCTTTACCACATATACACATCACACATATATTTCACATTAGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACACATACACATCACACATATATTTCACATTAGCCATTCG
*
83531804 GCTTTACCACATATACATATCACACATATGT
66 GCTTTACCACATATACATATCACACATATAT
83531835 TTCACATT
1 TTCACATT
83531843 CATCACATCG
Statistics
Matches: 99, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
94 69 0.70
95 1 0.01
96 29 0.29
ACGTcount: A:0.32, C:0.29, G:0.07, T:0.33
Consensus pattern (96 bp):
TTCACATTAGCCATTCGGCTTTACCACACATACACATCACACATATATTTCACATTAGCCATTCG
GCTTTACCACATATACATATCACACATATAT
Found at i:83531944 original size:47 final size:47
Alignment explanation
Indices: 83531834--83532167 Score: 533
Period size: 47 Copynumber: 7.0 Consensus size: 47
83531824 CACACATATG
*
83531834 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCAC--ATATATACAC
* * *
83531883 CTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACTC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACAC
*
83531930 TTTCACATTTATCACATTGGCCATTAGGCCTTATCACATGTATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACA--TATATACAC
83531979 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCAC--ATATATACAC
* * *
83532028 CTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACTC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACAC
*
83532075 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACTC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACAC
83532122 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACA
83532168 TCTCCACATA
Statistics
Matches: 268, Mismatches: 13, Indels: 10
0.92 0.04 0.03
Matches are distributed among these distances:
47 143 0.53
49 124 0.46
51 1 0.00
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.34
Consensus pattern (47 bp):
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACAC
Found at i:83531994 original size:145 final size:143
Alignment explanation
Indices: 83531834--83532165 Score: 619
Period size: 145 Copynumber: 2.3 Consensus size: 143
83531824 CACACATATG
*
83531834 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
*
83531899 TCGGCCATTAGGCCTTATCACATATATACTCTTTCACATTTATCACATTGGCCATTAGGCCTTAT
66 TCGGCCATTAGGCCTTATCACATATATACTCTTTCACATTCATCACATTGGCCATTAGGCCTTAT
83531964 CACATGTATATACAC
131 CACA--TATATACAC
83531979 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
83532044 TCGGCCATTAGGCCTTATCACATATATACTCTTTCACATTCATCACATTGGCCATTAGGCCTTAT
66 TCGGCCATTAGGCCTTATCACATATATACTCTTTCACATTCATCACATTGGCCATTAGGCCTTAT
*
83532109 CACATATATACTC
131 CACATATATACAC
83532122 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
83532166 CATCTCCACA
Statistics
Matches: 184, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
143 52 0.28
145 132 0.72
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.34
Consensus pattern (143 bp):
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACATATATACTCTTTCACATTCATCACATTGGCCATTAGGCCTTAT
CACATATATACAC
Found at i:83535843 original size:40 final size:40
Alignment explanation
Indices: 83535794--83536248 Score: 558
Period size: 40 Copynumber: 11.6 Consensus size: 40
83535784 CCAGCATGAT
* *
83535794 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
*
83535834 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
*
83535874 TGCTCTTCGGAATTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
*
83535914 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
*
83535954 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
*
83535994 TGCTCTTCGGAATTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
*
83536034 TGCTCTTCGGAACTTAGTCCGGATACAT--C-A-CA-GAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
*
83536069 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
* * * *
83536109 TGCTCTTTGGAACTTAG-CCGGATATAACCACAAGCAC-AA
1 TGCTCTTCGGAACTTAGCCCGGATA-CATCACTAGCACGAA
** * *
83536148 TTGC-CTTCGGGTCTTAACCCGGTATA-A-CAACTCA-CACAAA
1 -TGCTCTTCGGAACTTAGCCCGG-ATACATC-ACT-AGCACGAA
** * **
83536188 TGC-CTTCGGGTCTTAGCCCGGATATATTCACTAGCATAAA
1 TGCTCTTCGGAACTTAGCCCGGATACA-TCACTAGCACGAA
*
83536228 TGC-CTTCGGGACTTAGCCCGG
1 TGCTCTTCGGAACTTAGCCCGG
83536249 GTATCATTCA
Statistics
Matches: 376, Mismatches: 23, Indels: 32
0.87 0.05 0.07
Matches are distributed among these distances:
35 31 0.08
36 2 0.01
37 2 0.01
38 6 0.02
39 48 0.13
40 283 0.75
41 4 0.01
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
Found at i:83536174 original size:39 final size:40
Alignment explanation
Indices: 83536121--83536248 Score: 145
Period size: 39 Copynumber: 3.2 Consensus size: 40
83536111 CTCTTTGGAA
*
83536121 CTTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGT
1 CTTAGCCCGGATATAACCACAAGCACAAATGCCTTCGGGT
* * *
83536160 CTTAACCCGG-TATAACAACTCA-CACAAATGCCTTCGGGT
1 CTTAGCCCGGATATAACCAC-AAGCACAAATGCCTTCGGGT
** * * *
83536199 CTTAGCCCGGATATATTCACTAGCATAAATGCCTTCGGGA
1 CTTAGCCCGGATATAACCACAAGCACAAATGCCTTCGGGT
83536239 CTTAGCCCGG
1 CTTAGCCCGG
83536249 GTATCATTCA
Statistics
Matches: 74, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
39 38 0.51
40 36 0.49
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (40 bp):
CTTAGCCCGGATATAACCACAAGCACAAATGCCTTCGGGT
Found at i:83538188 original size:37 final size:37
Alignment explanation
Indices: 83538138--83538228 Score: 164
Period size: 37 Copynumber: 2.4 Consensus size: 37
83538128 TTATTACGAA
83538138 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
83538175 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
83538212 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
83538229 TTTCCAAGTT
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
37 47 0.90
38 5 0.10
ACGTcount: A:0.25, C:0.33, G:0.19, T:0.23
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:83538323 original size:48 final size:48
Alignment explanation
Indices: 83538268--83538466 Score: 355
Period size: 48 Copynumber: 4.2 Consensus size: 48
83538258 TGTTACAACA
*
83538268 TTCACATTAGCCATTCGGCTTTACCACACATACACATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACACATCACACATATAT
*
83538316 TTCACATTAGCCATTCGGCTTTACCAC-TATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACACATCACACATATAT
83538363 TTCACATTAGCCATTCGGCTTTACCACATATACACATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACACATCACACATATAT
* *
83538411 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATGT
1 TTCACATTAGCCATTCGGCTTTACCACATATACACATCACACATATAT
83538459 TTCACATT
1 TTCACATT
83538467 CATCACATCG
Statistics
Matches: 145, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
47 45 0.31
48 100 0.69
ACGTcount: A:0.32, C:0.29, G:0.07, T:0.33
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACACATCACACATATAT
Found at i:83538372 original size:95 final size:96
Alignment explanation
Indices: 83538268--83538466 Score: 373
Period size: 95 Copynumber: 2.1 Consensus size: 96
83538258 TGTTACAACA
83538268 TTCACATTAGCCATTCGGCTTTACCACACATACACATCACACATATATTTCACATTAGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACACATACACATCACACATATATTTCACATTAGCCATTCG
83538333 GCTTTACCAC-TATACATATCACACATATAT
66 GCTTTACCACATATACATATCACACATATAT
*
83538363 TTCACATTAGCCATTCGGCTTTACCACATATACACATCACACATATATTTCACATTAGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACACATACACATCACACATATATTTCACATTAGCCATTCG
*
83538428 GCTTTACCACATATACATATCACACATATGT
66 GCTTTACCACATATACATATCACACATATAT
83538459 TTCACATT
1 TTCACATT
83538467 CATCACATCG
Statistics
Matches: 101, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
95 74 0.73
96 27 0.27
ACGTcount: A:0.32, C:0.29, G:0.07, T:0.33
Consensus pattern (96 bp):
TTCACATTAGCCATTCGGCTTTACCACACATACACATCACACATATATTTCACATTAGCCATTCG
GCTTTACCACATATACATATCACACATATAT
Found at i:83538576 original size:47 final size:47
Alignment explanation
Indices: 83538458--83538789 Score: 540
Period size: 47 Copynumber: 7.0 Consensus size: 47
83538448 CACACATATG
*
83538458 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA-TAAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACT--C
* *
83538506 CTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACTC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACTC
*
83538553 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACA--TATATACTC
*
83538602 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCAC--ATATATACTC
* *
83538651 CTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACTC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACTC
83538698 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACTC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACTC
83538745 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATAC
83538790 ATCTCCTACA
Statistics
Matches: 270, Mismatches: 9, Indels: 11
0.93 0.03 0.04
Matches are distributed among these distances:
47 136 0.50
48 43 0.16
49 90 0.33
51 1 0.00
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.34
Consensus pattern (47 bp):
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACTC
Found at i:83538688 original size:145 final size:142
Alignment explanation
Indices: 83538458--83538788 Score: 617
Period size: 145 Copynumber: 2.3 Consensus size: 142
83538448 CACACATATG
*
83538458 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAACCTTCACATTCATCACAT
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATAACCTTCACATTCATCACAT
83538523 CGGCCATTAGGCCTTATCACATATATACTCTTTCACATTCATCACATTGGCCATTAGGCCTTATC
66 CGGCCATTAGGCCTTATCACATATATACTCTTTCACATTCATCACATTGGCCATTAGGCCTTATC
83538588 ACATGTATATACAC
131 ACA--TATATACAC
83538602 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATA-ACCTTCACATTCATCACA
83538667 TCGGCCATTAGGCCTTATCACATATATACTCTTTCACATTCATCACATTGGCCATTAGGCCTTAT
65 TCGGCCATTAGGCCTTATCACATATATACTCTTTCACATTCATCACATTGGCCATTAGGCCTTAT
*
83538732 CACATATATACTC
130 CACATATATACAC
83538745 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
83538789 CATCTCCTAC
Statistics
Matches: 184, Mismatches: 2, Indels: 3
0.97 0.01 0.02
Matches are distributed among these distances:
143 52 0.28
144 45 0.24
145 87 0.47
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.34
Consensus pattern (142 bp):
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATAACCTTCACATTCATCACAT
CGGCCATTAGGCCTTATCACATATATACTCTTTCACATTCATCACATTGGCCATTAGGCCTTATC
ACATATATACAC
Found at i:83542468 original size:40 final size:40
Alignment explanation
Indices: 83542419--83542758 Score: 591
Period size: 40 Copynumber: 8.6 Consensus size: 40
83542409 CCAGCATGAT
* * *
83542419 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
83542459 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* *
83542499 TGCTCTTCGGAATTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
83542539 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
83542579 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
83542619 TGCTCTTCGGAATTTAG-CCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
83542658 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
83542698 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
83542738 TGCTCTT---AACTTAG-CCGGATA
1 TGCTCTTCGGAACTTAGTCCGGATA
83542759 TAACCACAAG
Statistics
Matches: 290, Mismatches: 9, Indels: 6
0.95 0.03 0.02
Matches are distributed among these distances:
36 7 0.02
37 7 0.02
39 38 0.13
40 238 0.82
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:83542716 original size:119 final size:120
Alignment explanation
Indices: 83542419--83542744 Score: 618
Period size: 119 Copynumber: 2.7 Consensus size: 120
83542409 CCAGCATGAT
* * *
83542419 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATA
83542484 CATCACTAGCACGAATGCTCTTCGGAATTTAGCCCGGATACATCACTAGCACGAA
66 CATCACTAGCACGAATGCTCTTCGGAATTTAGCCCGGATACATCACTAGCACGAA
83542539 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATA
83542604 CATCACTAGCACGAATGCTCTTCGGAATTTAG-CCGGATACATCACTAGCACGAA
66 CATCACTAGCACGAATGCTCTTCGGAATTTAGCCCGGATACATCACTAGCACGAA
83542658 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATA
83542723 CATCACTAGCACGAATGCTCTT
66 CATCACTAGCACGAATGCTCTT
83542745 AACTTAGCCG
Statistics
Matches: 203, Mismatches: 3, Indels: 1
0.98 0.01 0.00
Matches are distributed among these distances:
119 109 0.54
120 94 0.46
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (120 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATA
CATCACTAGCACGAATGCTCTTCGGAATTTAGCCCGGATACATCACTAGCACGAA
Found at i:83542813 original size:40 final size:40
Alignment explanation
Indices: 83542423--83542879 Score: 194
Period size: 40 Copynumber: 11.6 Consensus size: 40
83542413 CATGATTGCT
* * * * *
83542423 CTTCGGGACCTAGCCCGGATACAT-CACTAGCACGAATGC
1 CTTCGGGTCTTAGCCCGGGTATATACACTAGCACAAATGC
** * * * *
83542462 TCTTCGGAACTTAGTCCGGATACAT-CACTAGCACGAATGC
1 -CTTCGGGTCTTAGCCCGGGTATATACACTAGCACAAATGC
* * * *
83542502 TCTTCGGAAT-TTAGCCCGGATACAT-CACTAGCACGAATGC
1 -CTTCGG-GTCTTAGCCCGGGTATATACACTAGCACAAATGC
** * * * *
83542542 TCTTCGGAACTTAGTCCGGATACAT-CACTAGCACGAATGC
1 -CTTCGGGTCTTAGCCCGGGTATATACACTAGCACAAATGC
** * * * *
83542582 TCTTCGGAACTTAGTCCGGATACAT-CACTAGCACGAATGC
1 -CTTCGGGTCTTAGCCCGGGTATATACACTAGCACAAATGC
* * * *
83542622 TCTTCGGAAT-TTAG-CCGGATACAT-CACTAGCACGAATGC
1 -CTTCGG-GTCTTAGCCCGGGTATATACACTAGCACAAATGC
** * * * *
83542661 TCTTCGGAACTTAGTCCGGATACAT-CACTAGCACGAATGC
1 -CTTCGGGTCTTAGCCCGGGTATATACACTAGCACAAATGC
** * * * *
83542701 TCTTCGGAACTTAGTCCGGATACAT-CACTAGCACGAATGC
1 -CTTCGGGTCTTAGCCCGGGTATATACACTAGCACAAATGC
** * * *
83542741 TCTT---AACTTAG-CCGGATATA-ACCACAAGCACAATTGC
1 -CTTCGGGTCTTAGCCCGGGTATATA-CACTAGCACAAATGC
*
83542778 CTTCGGGTCTTAACCCGGGTATA-ACAACTCA-CACAAATGC
1 CTTCGGGTCTTAGCCCGGGTATATAC-ACT-AGCACAAATGC
* * *
83542818 CTTCGGGTCTTAGCCCGGATATATTCACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGGTATATACACTAGCACAAATGC
*
83542858 CTTCGGGACTTAGCCCGGGTAT
1 CTTCGGGTCTTAGCCCGGGTAT
83542880 CATTCAAATG
Statistics
Matches: 377, Mismatches: 25, Indels: 30
0.87 0.06 0.07
Matches are distributed among these distances:
36 11 0.03
37 19 0.05
38 1 0.00
39 43 0.11
40 299 0.79
41 4 0.01
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGGTATATACACTAGCACAAATGC
Found at i:83544828 original size:37 final size:37
Alignment explanation
Indices: 83544778--83544868 Score: 164
Period size: 37 Copynumber: 2.4 Consensus size: 37
83544768 TTATTACGAA
83544778 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
83544815 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
83544852 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
83544869 TTTCCAAGTT
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
37 47 0.90
38 5 0.10
ACGTcount: A:0.25, C:0.33, G:0.19, T:0.23
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:83544963 original size:48 final size:48
Alignment explanation
Indices: 83544908--83545107 Score: 373
Period size: 48 Copynumber: 4.2 Consensus size: 48
83544898 TGTTACAACA
*
83544908 TTCACATTAGCCATTCGGCTTTACCACACATACACATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACACATCACACATATAT
*
83544956 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACACATCACACATATAT
83545004 TTCACATTAGCCATTCGGCTTTACCACATATACACATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACACATCACACATATAT
*
83545052 TTCACATTAGCCATTCGGCTTTACCACATATACACATCACACATATGT
1 TTCACATTAGCCATTCGGCTTTACCACATATACACATCACACATATAT
83545100 TTCACATT
1 TTCACATT
83545108 CATCACATCG
Statistics
Matches: 148, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 148 1.00
ACGTcount: A:0.33, C:0.29, G:0.07, T:0.32
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACACATCACACATATAT
Found at i:83545207 original size:47 final size:47
Alignment explanation
Indices: 83545099--83545432 Score: 542
Period size: 47 Copynumber: 7.0 Consensus size: 47
83545089 CACACATATG
*
83545099 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCAC--ATATATACAC
* * *
83545148 CTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACTC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACAC
83545195 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACA--TATATACAC
83545244 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCAC--ATATATACAC
* * *
83545293 CTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACTC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACAC
*
83545340 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACTC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACAC
83545387 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACA
83545433 TCTCCTACAT
Statistics
Matches: 270, Mismatches: 11, Indels: 10
0.93 0.04 0.03
Matches are distributed among these distances:
47 144 0.53
49 125 0.46
51 1 0.00
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.34
Consensus pattern (47 bp):
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACAC
Found at i:83545449 original size:145 final size:144
Alignment explanation
Indices: 83545099--83545430 Score: 630
Period size: 145 Copynumber: 2.3 Consensus size: 144
83545089 CACACATATG
*
83545099 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
83545164 TCGGCCATTAGGCCTTATCACATATATACTCTTTCACATTCATCACATTGGCCATTAGGCCTTAT
66 TCGGCCATTAGGCCTTATCACATATATACTCTTTCACATTCATCACATTGGCCATTAGGCCTTAT
83545229 CACATGTATATACAC
131 CACA-GTATATACAC
83545244 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
83545309 TCGGCCATTAGGCCTTATCACATATATACTCTTTCACATTCATCACATTGGCCATTAGGCCTTAT
66 TCGGCCATTAGGCCTTATCACATATATACTCTTTCACATTCATCACATTGGCCATTAGGCCTTAT
*
83545374 CACA-TATATACTC
131 CACAGTATATACAC
83545387 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
83545431 CATCTCCTAC
Statistics
Matches: 185, Mismatches: 2, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
143 52 0.28
145 133 0.72
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.34
Consensus pattern (144 bp):
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACATATATACTCTTTCACATTCATCACATTGGCCATTAGGCCTTAT
CACAGTATATACAC
Found at i:83548393 original size:29 final size:29
Alignment explanation
Indices: 83548361--83548418 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
83548351 TTGCAGGCAG
83548361 AATTCTTCTCATTTCTATTTTATTTTCTT
1 AATTCTTCTCATTTCTATTTTATTTTCTT
83548390 AATTCTTCTCATTTCTATTTTATTTTCTT
1 AATTCTTCTCATTTCTATTTTATTTTCTT
83548419 CTCTTTTGCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.17, C:0.17, G:0.00, T:0.66
Consensus pattern (29 bp):
AATTCTTCTCATTTCTATTTTATTTTCTT
Found at i:83550326 original size:49 final size:49
Alignment explanation
Indices: 83550254--83550428 Score: 260
Period size: 49 Copynumber: 3.5 Consensus size: 49
83550244 TGAGATCACG
*
83550254 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
* * * * * *
83550303 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-TT-GGTCGCA
83550354 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
*
83550403 TGTGTAGTACTAAGTGTAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
83550429 TGCGTACTAG
Statistics
Matches: 110, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
49 65 0.59
50 4 0.04
51 41 0.37
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
Found at i:83550424 original size:100 final size:100
Alignment explanation
Indices: 83550247--83550435 Score: 360
Period size: 100 Copynumber: 1.9 Consensus size: 100
83550237 TCTATTGTGA
*
83550247 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATTGGTCGCATGTGTAGTA
1 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTA
83550312 CTAAGTGCAGGCTACTATGCGTACCCGATAACTTC
66 CTAAGTGCAGGCTACTATGCGTACCCGATAACTTC
83550347 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTA
1 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTA
*
83550412 CTAAGTGTAGGCTACTATGCGTAC
66 CTAAGTGCAGGCTACTATGCGTAC
83550436 TAGATAGCCT
Statistics
Matches: 87, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
100 87 1.00
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (100 bp):
GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTA
CTAAGTGCAGGCTACTATGCGTACCCGATAACTTC
Found at i:83554758 original size:47 final size:47
Alignment explanation
Indices: 83554704--83554897 Score: 289
Period size: 47 Copynumber: 4.1 Consensus size: 47
83554694 TTAGGATTTT
** * *
83554704 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
83554751 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
83554798 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
83554845 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
83554892 ATGTGA
1 ATGTGA
83554898 AATATGTATG
Statistics
Matches: 133, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 133 1.00
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:83554804 original size:22 final size:22
Alignment explanation
Indices: 83554733--83554804 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
83554723 GTATATATGA
83554733 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
83554755 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
83554780 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
83554802 GAT
1 GAT
83554805 GAATGTGAGC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:83554853 original size:25 final size:25
Alignment explanation
Indices: 83554778--83554853 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
83554768 ATGCATATAT
83554778 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
83554803 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
83554825 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
83554850 GTGA
1 GTGA
83554854 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:83554931 original size:94 final size:94
Alignment explanation
Indices: 83554739--83555034 Score: 318
Period size: 94 Copynumber: 3.1 Consensus size: 94
83554729 ATGAGATAAG
* * * *
83554739 GCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGA
1 GCCGAATGGCCAATGTGATGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTAATGTGA
* * * *
83554804 TGA-ATG--TGAGCATGCATATGTGTGATAAG
66 -AATATGTATGAGAATGTATATGTG-G-TAAA
*
83554833 GCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTAATGTGA
1 GCCGAATGGCCAATGTGATGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTAATGTGA
83554898 AATATGTATGAGAATGTATATGTGGTAAA
66 AATATGTATGAGAATGTATATGTGGTAAA
* * * *
83554927 GCCGAATGGCTAATGTGAAAT-ATGTATGAGATATGC--ATATGTGGTAAAGCTGAATGG-TCAA
1 GCCGAATGGCCAATGTG--ATGA-ATATGA-ACATGCATATATGTGGTAAAGCCGAATGGCT-AA
*
83554988 TGTGAAATATATATATGAGATATGTATATGTGGTAAA
61 TGTG-AA-ATATGTATGAGA-ATGTATATGTGGTAAA
83555025 GCCGAATGGC
1 GCCGAATGGC
83555035 TAGTGTGAAA
Statistics
Matches: 176, Mismatches: 15, Indels: 18
0.84 0.07 0.09
Matches are distributed among these distances:
93 1 0.01
94 83 0.47
95 28 0.16
96 22 0.12
97 16 0.09
98 26 0.15
ACGTcount: A:0.34, C:0.10, G:0.28, T:0.28
Consensus pattern (94 bp):
GCCGAATGGCCAATGTGATGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTAATGTGA
AATATGTATGAGAATGTATATGTGGTAAA
Found at i:83555066 original size:50 final size:48
Alignment explanation
Indices: 83554867--83555050 Score: 291
Period size: 47 Copynumber: 3.8 Consensus size: 48
83554857 TGAACATGCA
83554867 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGA-ATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
83554914 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* * *
83554962 CATATGTGGTAAAGCTGAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
*
83555012 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
83555051 GGCGATGTGC
Statistics
Matches: 125, Mismatches: 7, Indels: 9
0.89 0.05 0.06
Matches are distributed among these distances:
47 45 0.36
48 35 0.28
49 4 0.03
50 40 0.32
51 1 0.01
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:83555295 original size:36 final size:37
Alignment explanation
Indices: 83555196--83555303 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
83555186 GGAAATATAT
*
83555196 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
83555233 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
83555270 TCCGGGTAAGA-CCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
83555304 CATTTGAGCT
Statistics
Matches: 68, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
36 21 0.31
37 47 0.69
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:83556560 original size:27 final size:26
Alignment explanation
Indices: 83556512--83556571 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
83556502 GCGAGGCTGC
*
83556512 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
83556539 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
83556565 TAGATAT
1 CAGATAT
83556572 ATATATGTGG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.35, C:0.18, G:0.23, T:0.23
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:83556658 original size:27 final size:26
Alignment explanation
Indices: 83556610--83556661 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
83556600 GTGAGGCTGC
*
83556610 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
83556636 CAGATATCTGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
83556662 TTGTAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.33, C:0.23, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:83556856 original size:21 final size:21
Alignment explanation
Indices: 83556832--83556874 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
83556822 ATTTCAGTCA
83556832 TTATTACCTATTGCTAAGGTT
1 TTATTACCTATTGCTAAGGTT
83556853 TTATTACCTATTGCTAAGGTT
1 TTATTACCTATTGCTAAGGTT
83556874 T
1 T
83556875 CATGCTCATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.23, C:0.14, G:0.14, T:0.49
Consensus pattern (21 bp):
TTATTACCTATTGCTAAGGTT
Found at i:83560660 original size:14 final size:14
Alignment explanation
Indices: 83560637--83560666 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
83560627 TTGAAAATAT
83560637 GTTGAATTGGATTG
1 GTTGAATTGGATTG
*
83560651 GTTGATTTGGATTG
1 GTTGAATTGGATTG
83560665 GT
1 GT
83560667 CTCGATATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.17, C:0.00, G:0.37, T:0.47
Consensus pattern (14 bp):
GTTGAATTGGATTG
Found at i:83566359 original size:29 final size:29
Alignment explanation
Indices: 83566325--83566484 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
83566315 GTGACGAGAT
83566325 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
83566354 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
83566383 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
83566412 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
83566441 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
83566470 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
83566485 GAAATCGAGT
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:83574503 original size:29 final size:29
Alignment explanation
Indices: 83574470--83574629 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
83574460 GTGACGAGAT
83574470 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
83574499 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
83574528 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
83574557 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
83574586 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
83574615 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
83574630 GAAATCGAGT
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:83576315 original size:40 final size:40
Alignment explanation
Indices: 83576235--83576495 Score: 418
Period size: 40 Copynumber: 6.5 Consensus size: 40
83576225 ACCCAAGTTT
* * * *
83576235 CTTCGGGAT-TTAG-CCGGATATAACCACACGCCCAATTGC
1 CTTCGGG-TCTTAGCCCGGATATAACAACTCGCACAAATGC
* * *
83576274 CTTCGGGTCTTAACCCGGACATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
83576314 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
*
83576354 CTTCGGGTCTTAGCCCGGATACAACAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
83576394 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
83576434 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
*
83576474 CTTCGGGGCTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
83576496 CATTCAAATG
Statistics
Matches: 207, Mismatches: 13, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
38 1 0.00
39 10 0.05
40 196 0.95
ACGTcount: A:0.26, C:0.31, G:0.21, T:0.22
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
Found at i:83584366 original size:40 final size:40
Alignment explanation
Indices: 83584286--83584570 Score: 480
Period size: 40 Copynumber: 7.1 Consensus size: 40
83584276 GGATTTAGCC
* * * * *
83584286 GATATAACCACACGCCCAATTGCCTTCGGGTCTTAACCCG
1 GATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCG
* *
83584326 GACATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCG
1 GATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCG
83584366 GATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCG
1 GATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCG
*
83584406 GATATAACAACTTGCACAAATGCCTTCGGGTCTTAGCCCG
1 GATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCG
*
83584446 GATACAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCG
1 GATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCG
83584486 GATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCG
1 GATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCG
*
83584526 GATATAACAACTCGCACAAATGCCTTCGGGGCTTAGCCCG
1 GATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCG
83584566 GATAT
1 GATAT
83584571 CATTCAAATG
Statistics
Matches: 231, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 231 1.00
ACGTcount: A:0.27, C:0.31, G:0.20, T:0.22
Consensus pattern (40 bp):
GATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCG
Found at i:83588983 original size:2 final size:2
Alignment explanation
Indices: 83588976--83589019 Score: 70
Period size: 2 Copynumber: 22.0 Consensus size: 2
83588966 ACTAGAACAG
* *
83588976 AT AT AT AT AT AT AT TT AT AT AT AT AT TT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
83589018 AT
1 AT
83589020 CTGGCGAAGC
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (2 bp):
AT
Found at i:83593815 original size:30 final size:30
Alignment explanation
Indices: 83593781--83593859 Score: 140
Period size: 30 Copynumber: 2.6 Consensus size: 30
83593771 ACTTTGACAA
**
83593781 AATTACATTTTTGCCCCTAAACTTTTGCAT
1 AATTACACATTTGCCCCTAAACTTTTGCAT
83593811 AATTACACATTTGCCCCTAAACTTTTGCAT
1 AATTACACATTTGCCCCTAAACTTTTGCAT
83593841 AATTACACATTTGCCCCTA
1 AATTACACATTTGCCCCTA
83593860 GGCTCGGGAA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 47 1.00
ACGTcount: A:0.29, C:0.27, G:0.06, T:0.38
Consensus pattern (30 bp):
AATTACACATTTGCCCCTAAACTTTTGCAT
Found at i:83595744 original size:20 final size:20
Alignment explanation
Indices: 83595721--83595778 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 20
83595711 TGCAAACAGG
*
83595721 GGCACTATAGTGCAAATAAA
1 GGCACAATAGTGCAAATAAA
* *
83595741 GGCACAATTGTGCAACTAAA
1 GGCACAATAGTGCAAATAAA
* * *
83595761 GGTACCAGAGTGCAAATA
1 GGCACAATAGTGCAAATA
83595779 GAGTCAAGAT
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.41, C:0.17, G:0.22, T:0.19
Consensus pattern (20 bp):
GGCACAATAGTGCAAATAAA
Found at i:83595773 original size:40 final size:40
Alignment explanation
Indices: 83595729--83595816 Score: 106
Period size: 40 Copynumber: 2.2 Consensus size: 40
83595719 GGGGCACTAT
* *
83595729 AGTGCAAATAAAGGCACA-ATTGTGCAACTAAAGGTACCAG
1 AGTGCAAATAAAGGCA-AGATTGTGCAACCAAAGGCACCAG
* * * *
83595769 AGTGCAAATAGAGTCAAGATTGTGCAACCAGAGGCACGAG
1 AGTGCAAATAAAGGCAAGATTGTGCAACCAAAGGCACCAG
83595809 AGTGCAAA
1 AGTGCAAA
83595817 CAGAGACACT
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
39 1 0.02
40 40 0.98
ACGTcount: A:0.41, C:0.17, G:0.26, T:0.16
Consensus pattern (40 bp):
AGTGCAAATAAAGGCAAGATTGTGCAACCAAAGGCACCAG
Found at i:83595832 original size:20 final size:20
Alignment explanation
Indices: 83595790--83595878 Score: 72
Period size: 20 Copynumber: 4.4 Consensus size: 20
83595780 AGTCAAGATT
* * *
83595790 GTGCAACCAGAGGCACGAGA
1 GTGCAAACAGAGGCACTAAA
*
83595810 GTGCAAACAGAGACACTAAA
1 GTGCAAACAGAGGCACTAAA
** *
83595830 GTGTGAATAGAGGCA-TCAAA
1 GTGCAAACAGAGGCACT-AAA
* *
83595850 GGTGCAAACAAAGGCACCAAA
1 -GTGCAAACAGAGGCACTAAA
83595871 GTGCAAAC
1 GTGCAAAC
83595879 CTATAAAAGT
Statistics
Matches: 53, Mismatches: 13, Indels: 6
0.74 0.18 0.08
Matches are distributed among these distances:
19 1 0.02
20 38 0.72
21 14 0.26
ACGTcount: A:0.43, C:0.20, G:0.27, T:0.10
Consensus pattern (20 bp):
GTGCAAACAGAGGCACTAAA
Found at i:83597644 original size:29 final size:29
Alignment explanation
Indices: 83597611--83597681 Score: 115
Period size: 29 Copynumber: 2.4 Consensus size: 29
83597601 GAGGAAACCC
*
83597611 TAAAGGGTGTGGAGATCTAGAGGCAACAA
1 TAAAGGGTGTGGAGATCCAGAGGCAACAA
83597640 TAAAGGGTGTGGAGATCCAGAGGCAACAA
1 TAAAGGGTGTGGAGATCCAGAGGCAACAA
*
83597669 TAGAGGGTAGTGG
1 TAAAGGGT-GTGG
83597682 CTGAGTAGAG
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
29 35 0.90
30 4 0.10
ACGTcount: A:0.35, C:0.10, G:0.38, T:0.17
Consensus pattern (29 bp):
TAAAGGGTGTGGAGATCCAGAGGCAACAA
Found at i:83599436 original size:39 final size:41
Alignment explanation
Indices: 83599386--83599598 Score: 237
Period size: 40 Copynumber: 5.4 Consensus size: 41
83599376 AGCACTCGTT
* *
83599386 CAAATACCTTCGGGA-CAT-GCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTCGGGATCATAGCCCGGATT-TAGTAACTCGCA
* *
83599425 CAAATGCCTTCGGGA-CTTATCCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGATCATAGCCCGGATTTAGTAACTCGCA
* *
83599465 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGATCATAGCCCGGATTTAGTAACTCGCA
* *
83599505 CAAATGCCTTC-GGATCTTAGTCC-GATTTAGTAACTCGCA
1 CAAATGCCTTCGGGATCATAGCCCGGATTTAGTAACTCGCA
* * * *
83599544 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTCACTTAGCA
1 CAAATGCCTTCGGGATCATAGCCCGGATTTAGTAAC-TCGCA
83599585 CAAA-GCCTTCGGGA
1 CAAATGCCTTCGGGA
83599599 CTTAGCCGGA
Statistics
Matches: 160, Mismatches: 8, Indels: 10
0.90 0.04 0.06
Matches are distributed among these distances:
39 58 0.36
40 89 0.56
41 13 0.08
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (41 bp):
CAAATGCCTTCGGGATCATAGCCCGGATTTAGTAACTCGCA
Found at i:83599463 original size:40 final size:40
Alignment explanation
Indices: 83599413--83599608 Score: 287
Period size: 40 Copynumber: 5.0 Consensus size: 40
83599403 TGCCCGGTTA
*
83599413 TAGTAGCTCGCACAAATGCCTTCGGGA-CTTA-TCCCGGATT
1 TAGTAACTCGCACAAATGCCTTC-GGATCTTAGT-CCGGATT
83599453 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
83599493 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCC-GATT
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
83599532 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
* *
83599572 TAGTCACTTAGCACAAA-GCCTTCGGGA-CTTAG-CCGGA
1 TAGTAAC-TCGCACAAATGCCTTC-GGATCTTAGTCCGGA
83599609 CATCATTCGA
Statistics
Matches: 148, Mismatches: 3, Indels: 11
0.91 0.02 0.07
Matches are distributed among these distances:
39 47 0.32
40 89 0.60
41 12 0.08
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (40 bp):
TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
Found at i:83599603 original size:79 final size:81
Alignment explanation
Indices: 83599413--83599603 Score: 293
Period size: 79 Copynumber: 2.4 Consensus size: 81
83599403 TGCCCGGTTA
* *
83599413 TAGTAGCTCGCACAAATGCCTTCGGGACTTA-TCCCGGATTTAGTAACTCGCACAAATGCCTTCG
1 TAGTAACTAGCACAAATGCCTTCGGGACTTAGTCCCGGATTTAGTAACTCGCACAAATGCCTTCG
83599477 GATCTTAGTCCGGATT
66 GATCTTAGTCCGGATT
*
83599493 TAGTAACTCGCACAAATGCCTTC-GGATCTTAGT-CC-GATTTAGTAACTCGCACAAATGCCTTC
1 TAGTAACTAGCACAAATGCCTTCGGGA-CTTAGTCCCGGATTTAGTAACTCGCACAAATGCCTTC
83599555 GGATCTTAGTCCGGATT
65 GGATCTTAGTCCGGATT
*
83599572 TAGTCACTTAGCACAAA-GCCTTCGGGACTTAG
1 TAGTAAC-TAGCACAAATGCCTTCGGGACTTAG
83599604 CCGGACATCA
Statistics
Matches: 104, Mismatches: 3, Indels: 9
0.90 0.03 0.08
Matches are distributed among these distances:
79 64 0.62
80 39 0.38
81 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.29
Consensus pattern (81 bp):
TAGTAACTAGCACAAATGCCTTCGGGACTTAGTCCCGGATTTAGTAACTCGCACAAATGCCTTCG
GATCTTAGTCCGGATT
Found at i:83610621 original size:47 final size:47
Alignment explanation
Indices: 83610552--83610677 Score: 189
Period size: 47 Copynumber: 2.7 Consensus size: 47
83610542 ACAATCAATA
* **
83610552 AGTACCCATACCATGGCCCGTAGCCAAATCAAAGTAACTTATCCTGG
1 AGTACCTATACCATGGCCCGTAGCCAAATCAAAGTAACTTATCCCAG
**
83610599 AGTACCTATACCATAACCCGTAGCCAAATCAAAGTAACTTATCCCAG
1 AGTACCTATACCATGGCCCGTAGCCAAATCAAAGTAACTTATCCCAG
* *
83610646 AGTAACTATACCATGGCTCGTAGCCAAATCAA
1 AGTACCTATACCATGGCCCGTAGCCAAATCAA
83610678 GGTATTATTT
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 70 1.00
ACGTcount: A:0.36, C:0.29, G:0.14, T:0.21
Consensus pattern (47 bp):
AGTACCTATACCATGGCCCGTAGCCAAATCAAAGTAACTTATCCCAG
Found at i:83623391 original size:2 final size:2
Alignment explanation
Indices: 83623384--83623420 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
83623374 CATTTTAACT
83623384 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
83623421 CACAAATCAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:83627147 original size:29 final size:29
Alignment explanation
Indices: 83627119--83627220 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
83627109 CCTCCGAGCT
** * * *
83627119 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
83627148 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
83627177 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
83627206 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
83627221 GATCTCGTCA
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:83635073 original size:29 final size:28
Alignment explanation
Indices: 83634932--83635081 Score: 105
Period size: 29 Copynumber: 5.5 Consensus size: 28
83634922 TACTCGATTT
* ** *
83634932 CGCACACTTAGTGCCGTA-ATTTAAGCC
1 CGCACACTTAGTGCCATATATTCCAGCA
** *** *
83634959 CGCACACACAGTGCCATACCCTCCGAGCT
1 CGCACACTTAGTGCCATATATTCC-AGCA
** * *
83634988 CGCACACCCAGTGCCGTATTTTCCAGC-
1 CGCACACTTAGTGCCATATATTCCAGCA
*
83635015 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATA-TTCCAGCA
83635044 CGCACACTTAGTGCCATATA-T-C-GCA
1 CGCACACTTAGTGCCATATATTCCAGCA
83635069 CGCACAC-TAGTGC
1 CGCACACTTAGTGC
83635082 ATCCGTACAC
Statistics
Matches: 100, Mismatches: 19, Indels: 11
0.77 0.15 0.08
Matches are distributed among these distances:
24 6 0.06
25 10 0.10
26 1 0.01
27 31 0.31
28 11 0.11
29 41 0.41
ACGTcount: A:0.25, C:0.35, G:0.17, T:0.23
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCCAGCA
Found at i:83644102 original size:40 final size:39
Alignment explanation
Indices: 83643937--83644120 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
83643927 AAATTGAATG
* * *
83643937 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
83643977 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
83644017 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
83644057 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
83644096 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
83644121 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:83644145 original size:80 final size:81
Alignment explanation
Indices: 83643977--83644165 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
83643967 GCTGGAAATT
* * * *
83643977 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
83644042 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
83644058 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
83644121 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
83644137 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
83644166 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:83650017 original size:19 final size:19
Alignment explanation
Indices: 83649993--83650035 Score: 77
Period size: 19 Copynumber: 2.3 Consensus size: 19
83649983 GGAAACGGGT
83649993 GTGTCTAGGGCACATGAGC
1 GTGTCTAGGGCACATGAGC
*
83650012 GTGTCTAGGGCACATGGGC
1 GTGTCTAGGGCACATGAGC
83650031 GTGTC
1 GTGTC
83650036 CCTGTGCCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.16, C:0.21, G:0.40, T:0.23
Consensus pattern (19 bp):
GTGTCTAGGGCACATGAGC
Found at i:83652072 original size:23 final size:23
Alignment explanation
Indices: 83652046--83652089 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
83652036 ATTCATTGGT
83652046 TCATTTACGCAT-TAATCACATAC
1 TCATTTACGCATAT-ATCACATAC
*
83652069 TCATTTAGGCATATATCACAT
1 TCATTTACGCATATATCACAT
83652090 TACACATAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.34, C:0.23, G:0.07, T:0.36
Consensus pattern (23 bp):
TCATTTACGCATATATCACATAC
Found at i:83654963 original size:40 final size:40
Alignment explanation
Indices: 83654872--83655011 Score: 165
Period size: 40 Copynumber: 3.5 Consensus size: 40
83654862 TGATAGCCGA
* * **
83654872 GCTAAGTCCCGAAGGCATTT-TGCGCTAGTGACTAGTTCCGG
1 GCTAAGTCCCGAAGGCATTTGT-C-CGAGTTACTACATCCGG
*
83654913 GCTAAGTCCCGAAGGCATTTGTCCGAGTTATTACATCCGG
1 GCTAAGTCCCGAAGGCATTTGTCCGAGTTACTACATCCGG
* * * *
83654953 GCTAAGTCCCGAAGGCAATGGTGCGAGTTACTATATCCGG
1 GCTAAGTCCCGAAGGCATTTGTCCGAGTTACTACATCCGG
*
83654993 GCTATGTCCCGAAGGCATT
1 GCTAAGTCCCGAAGGCATT
83655012 GAGTGAGTAG
Statistics
Matches: 86, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
40 64 0.74
41 21 0.24
42 1 0.01
ACGTcount: A:0.22, C:0.24, G:0.28, T:0.26
Consensus pattern (40 bp):
GCTAAGTCCCGAAGGCATTTGTCCGAGTTACTACATCCGG
Found at i:83657879 original size:19 final size:19
Alignment explanation
Indices: 83657857--83657919 Score: 58
Period size: 19 Copynumber: 3.3 Consensus size: 19
83657847 AATTCTAAAA
83657857 ATTCATACCTTATCTATAT
1 ATTCATACCTTATCTATAT
* * *
83657876 ATTCA-A-ATTCAATTCTAAAA
1 ATTCATACCTT--A-TCTATAT
83657896 ATTCATACCTTATCTATAT
1 ATTCATACCTTATCTATAT
83657915 ATTCA
1 ATTCA
83657920 AACTTGTAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 10
0.67 0.12 0.20
Matches are distributed among these distances:
17 2 0.06
18 1 0.03
19 16 0.48
20 11 0.33
21 1 0.03
22 2 0.06
ACGTcount: A:0.38, C:0.19, G:0.00, T:0.43
Consensus pattern (19 bp):
ATTCATACCTTATCTATAT
Found at i:83657898 original size:39 final size:39
Alignment explanation
Indices: 83657844--83657921 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
83657834 CTCCAATAGG
83657844 TTCAATTCTAAAAATTCATACCTTATCTATATATTCAAA
1 TTCAATTCTAAAAATTCATACCTTATCTATATATTCAAA
83657883 TTCAATTCTAAAAATTCATACCTTATCTATATATTCAAA
1 TTCAATTCTAAAAATTCATACCTTATCTATATATTCAAA
83657922 CTTGTAATAC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.41, C:0.18, G:0.00, T:0.41
Consensus pattern (39 bp):
TTCAATTCTAAAAATTCATACCTTATCTATATATTCAAA
Found at i:83662237 original size:31 final size:31
Alignment explanation
Indices: 83662196--83662259 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
83662186 CCTTTTCATA
*
83662196 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
83662227 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
83662258 TT
1 TT
83662260 ACTGTAAACA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:83662503 original size:24 final size:24
Alignment explanation
Indices: 83662451--83662640 Score: 251
Period size: 24 Copynumber: 8.0 Consensus size: 24
83662441 ACTTTATCAT
* *
83662451 ATAACTGGAGGCCT-AGCCTCTTTTC
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
83662476 ATAACTAGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
83662500 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
83662523 ATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
* *
83662547 ATAACTGGGGCATAAGCTCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
83662571 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
83662595 ATAATTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
83662618 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
83662641 TCACTTCCTC
Statistics
Matches: 148, Mismatches: 14, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
23 43 0.29
24 94 0.64
25 11 0.07
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:83662540 original size:47 final size:47
Alignment explanation
Indices: 83662476--83662640 Score: 258
Period size: 47 Copynumber: 3.5 Consensus size: 47
83662466 GCCTCTTTTC
* * *
83662476 ATAACTAGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTA
1 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTA
* * *
83662523 ATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATAAGCTCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGC-CCTTTA
*
83662571 ATAACTGGGGCATAAGCCCTTTTGATAATTGGGGCATAAGCCCTTTA
1 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTA
83662618 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
83662641 TCACTTCCTC
Statistics
Matches: 107, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
47 64 0.60
48 43 0.40
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (47 bp):
ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTA
Found at i:83662551 original size:71 final size:72
Alignment explanation
Indices: 83662451--83662640 Score: 251
Period size: 71 Copynumber: 2.7 Consensus size: 72
83662441 ACTTTATCAT
* * * *
83662451 ATAACTGGAGGCCT-AGCCTCTTTTCATAACTAGGGCAAAAGCCCTTTTAATAACTGGGGCATAA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAA
83662515 GCCC-TTTA
64 GCCCTTTTA
* * * *
83662523 ATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATAAGCTCTTTTGATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGC
*
83662588 CCTTTTG
66 CCTTTTA
*
83662595 ATAATTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
83662641 TCACTTCCTC
Statistics
Matches: 105, Mismatches: 11, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
71 73 0.70
72 32 0.30
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (72 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGC
CCTTTTA
Found at i:83662582 original size:95 final size:96
Alignment explanation
Indices: 83662451--83662640 Score: 294
Period size: 95 Copynumber: 2.0 Consensus size: 96
83662441 ACTTTATCAT
*
83662451 ATAACTGGAGGCCTAGCCTCTTTTCATAACTAGGGCAAAAGCCCTTTTAATAACTGGGGCATAAG
1 ATAACTGGAGGCATAGCCTCTTTTCATAACTAGGGCAAAAGCCCTTTTAATAACTGGGGCATAAG
*
83662516 CCCTTTAATAACTGGGGCGTAAGCCCTTTTG
66 CCCTTTAATAACTGGGGCATAAGCCCTTTTG
* * * * *
83662547 ATAACTGG-GGCATAAG-CTCTTTTGATAACTGGGGCATAAGCCCTTTTGATAATTGGGGCATAA
1 ATAACTGGAGGCAT-AGCCTCTTTTCATAACTAGGGCAAAAGCCCTTTTAATAACTGGGGCATAA
83662610 GCCCTTTAATAACTGGGGCATAAGCCCTTTT
65 GCCCTTTAATAACTGGGGCATAAGCCCTTTT
83662641 TCACTTCCTC
Statistics
Matches: 86, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
95 76 0.88
96 10 0.12
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (96 bp):
ATAACTGGAGGCATAGCCTCTTTTCATAACTAGGGCAAAAGCCCTTTTAATAACTGGGGCATAAG
CCCTTTAATAACTGGGGCATAAGCCCTTTTG
Found at i:83662713 original size:9 final size:9
Alignment explanation
Indices: 83662699--83662755 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
83662689 ATCTCGTGTG
83662699 CATATCATA
1 CATATCATA
*
83662708 CATATCATGTG
1 CATATCA--TA
83662719 CATATCATA
1 CATATCATA
* *
83662728 CATGTCATGTG
1 CATATCA--TA
83662739 CATATCATA
1 CATATCATA
83662748 CATATCAT
1 CATATCAT
83662756 GTTTACCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:83662718 original size:20 final size:20
Alignment explanation
Indices: 83662695--83662757 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
83662685 GAACATCTCG
83662695 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
83662715 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
83662735 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
83662755 TGT
1 TGT
83662758 TTACCAAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:83662822 original size:25 final size:25
Alignment explanation
Indices: 83662794--83662841 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
83662784 ATATATAAAC
* * *
83662794 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
83662819 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
83662842 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:83664105 original size:27 final size:27
Alignment explanation
Indices: 83664075--83664269 Score: 225
Period size: 27 Copynumber: 7.3 Consensus size: 27
83664065 AGGGTATTTT
* *
83664075 AGTAATTTTTTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
83664102 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
83664129 -GATAATTATGTAAATCG-GGGTAAAAC
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* * * * *
83664155 GGTAATTATGTAAATTGGGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
83664182 GGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
83664209 AGTAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
* *
83664236 GGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
83664263 AGTAATT
1 AGTAATT
83664270 GGTAAACTAA
Statistics
Matches: 146, Mismatches: 17, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
26 25 0.17
27 120 0.82
28 1 0.01
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.29
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:83664236 original size:107 final size:108
Alignment explanation
Indices: 83664076--83664269 Score: 293
Period size: 107 Copynumber: 1.8 Consensus size: 108
83664066 GGGTATTTTA
* * *
83664076 GTAATTTTTTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACGATAATTATGTA
1 GTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACGATAATTATATA
*
83664141 AATCG-GGGTAAAACGGTAATTATGTAAATTGGGGGTAAAATG
66 AATCGAGGGTAAAACAGTAATTATGTAAATTGGGGGTAAAATG
* * * *
83664183 GTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAA-CTGAGGGTAAAACGGTAATTCTAT
1 GTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAATC-AAGGGTAAAACGATAATTATAT
83664247 AAATCGAGGGTAAAACAGTAATT
65 AAATCGAGGGTAAAACAGTAATT
83664270 GGTAAACTAA
Statistics
Matches: 77, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
106 1 0.01
107 61 0.79
108 15 0.19
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.29
Consensus pattern (108 bp):
GTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACGATAATTATATA
AATCGAGGGTAAAACAGTAATTATGTAAATTGGGGGTAAAATG
Found at i:83667420 original size:55 final size:53
Alignment explanation
Indices: 83667332--83667587 Score: 172
Period size: 55 Copynumber: 4.8 Consensus size: 53
83667322 CATTAGGCTT
* * * *
83667332 TAAGGATACGATGTAAGACCATGCCATGGCATGGAAATTGGTAAGGTTTCTAAGG
1 TAAGGATACCATGTAAGACCATGCAAAGACATGG-AATTGGTAA-GTTTCTAAGG
* * * *
83667387 TAAGGATACCATGTAAGACCATGTAAAGACATGGCATTGATAAGTTACTATAAGG
1 TAAGGATACCATGTAAGACCATGCAAAGACATGGAATTGGTAAGTT--TCTAAGG
* * * * *
83667442 CAAAGG-TCCCATGTAAGACCATGCCAATG-CATGGCATTGGTGAG-TTCATAAGG
1 -TAAGGATACCATGTAAGACCATG-CAAAGACATGGAATTGGTAAGTTTC-TAAGG
** *
83667495 CCAGGATACCATGTAAGACCATGTC-GAGACATGGCAA-TGGTAAGTTTC-AA--
1 TAAGGATACCATGTAAGACCATG-CAAAGACATGG-AATTGGTAAGTTTCTAAGG
** * *
83667545 -AAGGATATGATGTAAGACCATG-ACAAGTCATGGAAATGGTAAG
1 TAAGGATACCATGTAAGACCATGCA-AAGACATGGAATTGGTAAG
83667588 GTACCCGTGT
Statistics
Matches: 161, Mismatches: 28, Indels: 30
0.74 0.13 0.14
Matches are distributed among these distances:
48 2 0.01
49 33 0.20
52 7 0.04
53 36 0.22
54 12 0.07
55 64 0.40
56 7 0.04
ACGTcount: A:0.36, C:0.15, G:0.26, T:0.23
Consensus pattern (53 bp):
TAAGGATACCATGTAAGACCATGCAAAGACATGGAATTGGTAAGTTTCTAAGG
Found at i:83667518 original size:108 final size:110
Alignment explanation
Indices: 83667342--83667540 Score: 280
Period size: 108 Copynumber: 1.8 Consensus size: 110
83667332 TAAGGATACG
*
83667342 ATGTAAGACCATGCCATGGCATGGAAATTGGTAAGGTTTCTAAGGTAAGGATACCATGTAAGACC
1 ATGTAAGACCATGCCATGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGACC
*
83667407 ATGTAAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCCC
66 ATGTAAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCC
* * *
83667452 ATGTAAGACCATGCCAAT-GCATGG-CATTGGTGA-G-TTCATAAGGCCAGGATACCATGTAAGA
1 ATGTAAGACCATGCC-ATGGCATGGAAATTGGTAAGGTTTC-TAAGGCAAGGATACCATGTAAGA
** *
83667513 CCATGTCGAGACATGGCAATGGTAAGTT
64 CCATGTAAAGACATGGCAATGATAAGTT
83667541 TCAAAAGGAT
Statistics
Matches: 79, Mismatches: 8, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
107 3 0.04
108 46 0.58
109 7 0.09
110 21 0.27
111 2 0.03
ACGTcount: A:0.34, C:0.17, G:0.26, T:0.24
Consensus pattern (110 bp):
ATGTAAGACCATGCCATGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGACC
ATGTAAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCC
Found at i:83667528 original size:53 final size:56
Alignment explanation
Indices: 83667333--83667540 Score: 198
Period size: 55 Copynumber: 3.8 Consensus size: 56
83667323 ATTAGGCTTT
* * * * * * *
83667333 AAGGATACGATGTAAGACCATGCCATGGCATGGAAATTGGTAAGGTT--TCTAAGG-T
1 AAGGATACCATGTAAGACCATGTCAAGACATGG-CATTGGTAA-GTTACTATAAGGCA
* *
83667388 AAGGATACCATGTAAGACCATGTAAAGACATGGCATTGATAAGTTACTATAAGGCA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTACTATAAGGCA
* * *
83667444 AAGG-TCCCATGTAAGACCATGCCAATG-CATGGCATTGGTGAGTT-C-ATAAGGC-
1 AAGGATACCATGTAAGACCATGTCAA-GACATGGCATTGGTAAGTTACTATAAGGCA
* * *
83667496 CAGGATACCATGTAAGACCATGTCGAGACATGGCAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTT
83667541 TCAAAAGGAT
Statistics
Matches: 127, Mismatches: 20, Indels: 14
0.79 0.12 0.09
Matches are distributed among these distances:
52 4 0.03
53 43 0.34
54 8 0.06
55 67 0.53
56 5 0.04
ACGTcount: A:0.34, C:0.16, G:0.26, T:0.24
Consensus pattern (56 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTACTATAAGGCA
Found at i:83667800 original size:16 final size:16
Alignment explanation
Indices: 83667779--83667809 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
83667769 ATAAATTTGA
83667779 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
83667795 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
83667810 AGTGAAGAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:83675212 original size:53 final size:53
Alignment explanation
Indices: 83675038--83675244 Score: 240
Period size: 53 Copynumber: 3.8 Consensus size: 53
83675028 ATTAGGGTTT
83675038 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGC-ATTGGTAA-G-TTCATAAGGC
* * * *
83675093 AAGGATGCCATGTAAGACCATGTCAA-GAATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTT-C-ATAAGGC
* * *
83675147 AAATG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTCATAAGGC
* * * *
83675200 AAGGATACCATGTAAGACCATGTCGAGACATGGCAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTT
83675245 TCAAAAGGAT
Statistics
Matches: 129, Mismatches: 17, Indels: 14
0.81 0.11 0.09
Matches are distributed among these distances:
51 2 0.02
52 5 0.04
53 48 0.37
54 32 0.25
55 42 0.33
ACGTcount: A:0.34, C:0.17, G:0.26, T:0.23
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTCATAAGGC
Found at i:83675504 original size:16 final size:16
Alignment explanation
Indices: 83675483--83675513 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
83675473 ATAAATTTGA
83675483 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
83675499 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
83675514 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:83680904 original size:58 final size:58
Alignment explanation
Indices: 83680811--83680923 Score: 208
Period size: 58 Copynumber: 1.9 Consensus size: 58
83680801 GTTATTGTAG
* *
83680811 GCAAATTCAACCAAAGATAGATACTTCTCCTAACTGCCTTCAAATTTTAAAACACAGC
1 GCAAATTCAACCAAAGATAGATACTTCTCCCAACTGCCTTCAAATTCTAAAACACAGC
83680869 GCAAATTCAACCAAAGATAGATACTTCTCCCAACTGCCTTCAAATTCTAAAACAC
1 GCAAATTCAACCAAAGATAGATACTTCTCCCAACTGCCTTCAAATTCTAAAACAC
83680924 GGCATCTAAG
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
58 53 1.00
ACGTcount: A:0.40, C:0.27, G:0.08, T:0.25
Consensus pattern (58 bp):
GCAAATTCAACCAAAGATAGATACTTCTCCCAACTGCCTTCAAATTCTAAAACACAGC
Found at i:83704197 original size:49 final size:49
Alignment explanation
Indices: 83704144--83704251 Score: 139
Period size: 49 Copynumber: 2.2 Consensus size: 49
83704134 TGCCAGATAG
*
83704144 GTCTTACACTGACTTTCATATATCGAG-G-CTGATGCCATGTCCCAGACAA
1 GTCTTACACTGACTATCATATATCG-GTGTC-GATGCCATGTCCCAGACAA
* * * *
83704193 GTCTTACACTGGCTATCATCTATCGGTGTCGATGGCATGTCCCAGACAG
1 GTCTTACACTGACTATCATATATCGGTGTCGATGCCATGTCCCAGACAA
83704242 GTCTTACACT
1 GTCTTACACT
83704252 AGCTTGTATA
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
48 1 0.02
49 50 0.96
50 1 0.02
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (49 bp):
GTCTTACACTGACTATCATATATCGGTGTCGATGCCATGTCCCAGACAA
Found at i:83705767 original size:25 final size:26
Alignment explanation
Indices: 83705739--83705798 Score: 63
Period size: 25 Copynumber: 2.4 Consensus size: 26
83705729 TAATTAATAT
*
83705739 AAAATATTAATAATTCAAT-AAATTG
1 AAAATATTAATAATTAAATAAAATTG
* *
83705764 AAAA-ATTAAATGATTAAATAAAATTT
1 AAAATATT-AATAATTAAATAAAATTG
83705790 AAAAT-TTAA
1 AAAATATTAA
83705799 GAGAAAAATT
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
24 3 0.10
25 15 0.52
26 11 0.38
ACGTcount: A:0.60, C:0.02, G:0.03, T:0.35
Consensus pattern (26 bp):
AAAATATTAATAATTAAATAAAATTG
Found at i:83706500 original size:22 final size:20
Alignment explanation
Indices: 83706461--83706507 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 20
83706451 TATAAAGTTG
83706461 ATAATAATTAATATATATT-
1 ATAATAATTAATATATATTA
83706480 ATAATAGATATAATTATATATTA
1 ATAATA-AT-TAA-TATATATTA
83706503 ATAAT
1 ATAAT
83706508 TAGCATCTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.25
20 2 0.08
21 3 0.12
22 8 0.33
23 5 0.21
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (20 bp):
ATAATAATTAATATATATTA
Done.