Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 264 of 318
Found at i:83706617 original size:28 final size:29
Alignment explanation
Indices: 83706560--83706617 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
83706550 CCTTTTGAAA
* * *
83706560 ATATTTACAAAAAGATACATCTAATTTTT
1 ATATTTACAAAAAGATACAACCAAATTTT
*
83706589 ATATTTACAAAAAGA-GCAACCAAATTTT
1 ATATTTACAAAAAGATACAACCAAATTTT
83706617 A
1 A
83706618 AAAATAGTTC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
28 10 0.40
29 15 0.60
ACGTcount: A:0.48, C:0.12, G:0.05, T:0.34
Consensus pattern (29 bp):
ATATTTACAAAAAGATACAACCAAATTTT
Found at i:83713335 original size:21 final size:20
Alignment explanation
Indices: 83713311--83713352 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 20
83713301 TGAAATGCAA
83713311 TCAACCTAACA-TGAATTAAAT
1 TCAACCTAA-ATTG-ATTAAAT
*
83713332 TCAAGCTAAATTGATTAAAT
1 TCAACCTAAATTGATTAAAT
83713352 T
1 T
83713353 AACTATTCCA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.45, C:0.14, G:0.07, T:0.33
Consensus pattern (20 bp):
TCAACCTAAATTGATTAAAT
Found at i:83727120 original size:48 final size:54
Alignment explanation
Indices: 83727065--83727163 Score: 138
Period size: 48 Copynumber: 1.9 Consensus size: 54
83727055 AACCAGCCCC
83727065 TTCCTCCTTCT-CTATTT-TT-CTTTCCTT-TTTCTT-TT-CCCTTTCTCTTCT
1 TTCCTCCTTCTCCTATTTGTTCCTTTCCTTCTTTCTTCTTCCCCTTTCTCTTCT
*
83727113 TTCCTCCTTCTCCCTCTTTGTTCCTTTCCTTCTTTCTTCTTCCCCTTTCTC
1 TTCCTCCTTCT-CCTATTTGTTCCTTTCCTTCTTTCTTCTTCCCCTTTCTC
83727164 CTTCCCCACC
Statistics
Matches: 43, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
48 11 0.26
50 5 0.12
51 2 0.05
52 8 0.19
53 6 0.14
54 2 0.05
55 9 0.21
ACGTcount: A:0.01, C:0.38, G:0.01, T:0.60
Consensus pattern (54 bp):
TTCCTCCTTCTCCTATTTGTTCCTTTCCTTCTTTCTTCTTCCCCTTTCTCTTCT
Found at i:83728981 original size:18 final size:18
Alignment explanation
Indices: 83728939--83728984 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
83728929 TTATTTTGCT
*
83728939 TTTCC-TTTTTTTTTATC
1 TTTCCATTTTTTTTTATA
*
83728956 TTTTCATTTTTATTTT-TA
1 TTTCCATTTTT-TTTTATA
83728974 TTTCCATTTTT
1 TTTCCATTTTT
83728985 CATGTTTTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
17 4 0.17
18 16 0.67
19 4 0.17
ACGTcount: A:0.11, C:0.13, G:0.00, T:0.76
Consensus pattern (18 bp):
TTTCCATTTTTTTTTATA
Found at i:83732830 original size:47 final size:49
Alignment explanation
Indices: 83732767--83733016 Score: 205
Period size: 47 Copynumber: 5.2 Consensus size: 49
83732757 TTTGTGTTAT
*
83732767 AGTGTAA-AACATGTCTGGGACAT-GCATCGGCCAC-ATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATTATGAGAGCC
** * * * *
83732813 AGTGTAAGACCATGTCTGGGACATGGCATC-GATATTGA-GATGAGATCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-CGATTATGAGAGCC
* * * *
83732861 AGTATAAGA-CATGTTTGGGACAT-GCATCGGCCTCGA-GATGTA-AGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATTATG-AGAGCC
* * * *
83732907 ATTGTAAGACCATGTCTGGGACATGGCATCGG-CACGGGTATGTGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCAC-GAT-TATGAGAGCC
* * * * * *
83732957 AGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCAATTTTGATAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATTATGAGAGCC
83733006 AGTGTAAGACC
1 AGTGTAAGACC
83733017 TGGGACATGG
Statistics
Matches: 159, Mismatches: 32, Indels: 23
0.74 0.15 0.11
Matches are distributed among these distances:
46 27 0.17
47 47 0.30
48 28 0.18
49 19 0.12
50 36 0.23
51 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (49 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATTATGAGAGCC
Found at i:83732936 original size:94 final size:94
Alignment explanation
Indices: 83732766--83732937 Score: 258
Period size: 94 Copynumber: 1.8 Consensus size: 94
83732756 GTTTGTGTTA
* *
83732766 TAGTGTAAAACATGTCTGGGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATGTCTG
1 TAGTATAAAACATGTCTGGGACATGCATCGGCCACATGATGAGAGCCAGTGTAAGACCATGTCTG
83732831 GGACATGGCATCGATATTGAGATGAGATC
66 GGACATGGCATCGATATTGAGATGAGATC
* * * *
83732860 TAGTATAAGACATGTTTGGGACATGCATCGGCCTCGA-GATGTA-AGCCATTGTAAGACCATGTC
1 TAGTATAAAACATGTCTGGGACATGCATCGGCCAC-ATGATG-AGAGCCAGTGTAAGACCATGTC
83732923 TGGGACATGGCATCG
64 TGGGACATGGCATCG
83732938 GCACGGGTAT
Statistics
Matches: 70, Mismatches: 6, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
94 68 0.97
95 2 0.03
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (94 bp):
TAGTATAAAACATGTCTGGGACATGCATCGGCCACATGATGAGAGCCAGTGTAAGACCATGTCTG
GGACATGGCATCGATATTGAGATGAGATC
Found at i:83741278 original size:50 final size:49
Alignment explanation
Indices: 83741062--83741266 Score: 243
Period size: 50 Copynumber: 4.1 Consensus size: 49
83741052 TAGCCGAAGC
* * *
83741062 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* * *
83741111 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC-AAT
* * * *
83741161 CATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-T
* * *
83741212 TATCAGGTAGCA--TAGTAGCCTGCATTTAGTACTACACATGCGACCAAT
1 TATCTGGTA-CACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
83741260 TATCTGG
1 TATCTGG
83741267 CTGCACTTAG
Statistics
Matches: 133, Mismatches: 19, Indels: 9
0.83 0.12 0.06
Matches are distributed among these distances:
48 7 0.05
49 44 0.33
50 73 0.55
51 7 0.05
52 2 0.02
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (49 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
Found at i:83741974 original size:30 final size:30
Alignment explanation
Indices: 83741940--83742000 Score: 88
Period size: 30 Copynumber: 2.0 Consensus size: 30
83741930 CTTTAATATG
83741940 AACTTTGGCAAAATTAC-CATTTTGCCCCTA
1 AACTTTGGCAAAATTACAC-TTTTGCCCCTA
* *
83741970 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
83742000 A
1 A
83742001 GCTCGAGAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 27 0.96
31 1 0.04
ACGTcount: A:0.30, C:0.26, G:0.08, T:0.36
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:83751385 original size:15 final size:16
Alignment explanation
Indices: 83751367--83751396 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
83751357 AATTGTTTTA
83751367 TTAC-GAATTTCACTC
1 TTACAGAATTTCACTC
83751382 TTACAGAATTTCACT
1 TTACAGAATTTCACT
83751397 TACACCATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.40
Consensus pattern (16 bp):
TTACAGAATTTCACTC
Found at i:83751723 original size:50 final size:50
Alignment explanation
Indices: 83751597--83751886 Score: 269
Period size: 50 Copynumber: 5.8 Consensus size: 50
83751587 AACTGAAGCT
* * *
83751597 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACC-AACA
1 ATCTAGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
** * *
83751646 ATCCGGTACACGTAGTAGCCTGTACTTAGTACTACACACGTGACCTAACC
1 ATCTAGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
* * * * **
83751696 ATCTAATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTT
1 ATCTAGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-CC
* ** * * * ** *
83751747 TTCGGGTACGCATAGTAGCCCGCACTTAGTACTACACATGCAACCTAACT
1 ATCTAGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
* * * *
83751797 ATCTAGTACACGTAGTAGCCTGCACTTAGTACTGCACACATGATCTAAAACC
1 ATCTAGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCT--AACC
* * *
83751849 ATCTTA-AACACATAGTGGCCTGCACATAGTACTACACA
1 ATC-TAGTACACATAGTAGCCTGCACTTAGTACTACACA
83751887 TGTGTTCTCA
Statistics
Matches: 192, Mismatches: 44, Indels: 7
0.79 0.18 0.03
Matches are distributed among these distances:
49 41 0.21
50 80 0.42
51 36 0.19
52 33 0.17
53 2 0.01
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (50 bp):
ATCTAGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
Found at i:83751793 original size:101 final size:100
Alignment explanation
Indices: 83751603--83751841 Score: 300
Period size: 101 Copynumber: 2.4 Consensus size: 100
83751593 AGCTATCTGG
* * * *
83751603 TACACATAGTAGCCTGCACTTAGTACTACACATGTGA-CCAACAATCCGGTACACGTAGTAGCCT
1 TACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCCAACAATCCGGTACACATAGTAGCCC
* **
83751667 GTACTTAGTACTACACACGTGACCTAACCATCTAA
66 GCACTTAGTACTACACACGCAACCTAACCATCTAA
* *** * *
83751702 TACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTTTCGGGTACGCATAGTAGCC
1 TACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCCAA-CAATCCGGTACACATAGTAGCC
* * *
83751767 CGCACTTAGTACTACACATGCAACCTAACTATCTAG
65 CGCACTTAGTACTACACACGCAACCTAACCATCTAA
* *
83751803 TACACGTAGTAGCCTGCACTTAGTACTGCACACATGATC
1 TACACGTAGTAGCCTGCACTTAGTACTACACACGTGATC
83751842 TAAAACCATC
Statistics
Matches: 120, Mismatches: 18, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
99 35 0.29
100 3 0.03
101 82 0.68
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (100 bp):
TACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCCAACAATCCGGTACACATAGTAGCCC
GCACTTAGTACTACACACGCAACCTAACCATCTAA
Found at i:83754488 original size:15 final size:13
Alignment explanation
Indices: 83754463--83754519 Score: 53
Period size: 15 Copynumber: 4.0 Consensus size: 13
83754453 AGATAACAAG
83754463 AAAAT-CAAGATTA
1 AAAATCCAAGA-TA
83754476 AAAAGTCCAAGATA
1 AAAA-TCCAAGATA
83754490 GAGAAATCCAAGATAA
1 -A-AAATCCAAGAT-A
83754506 AGAAATCCAAGATA
1 A-AAATCCAAGATA
83754520 CAATATCATA
Statistics
Matches: 39, Mismatches: 0, Indels: 9
0.81 0.00 0.19
Matches are distributed among these distances:
13 4 0.10
14 4 0.10
15 27 0.69
16 4 0.10
ACGTcount: A:0.58, C:0.12, G:0.14, T:0.16
Consensus pattern (13 bp):
AAAATCCAAGATA
Found at i:83754495 original size:30 final size:30
Alignment explanation
Indices: 83754464--83754519 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
83754454 GATAACAAGA
*
83754464 AAAT-CAAGATTAAA-AAGTCCAAGATAGAG
1 AAATCCAAGA-TAAAGAAATCCAAGATAGAG
83754493 AAATCCAAGATAAAGAAATCCAAGATA
1 AAATCCAAGATAAAGAAATCCAAGATA
83754520 CAATATCATA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
29 8 0.33
30 16 0.67
ACGTcount: A:0.57, C:0.12, G:0.14, T:0.16
Consensus pattern (30 bp):
AAATCCAAGATAAAGAAATCCAAGATAGAG
Found at i:83760101 original size:17 final size:16
Alignment explanation
Indices: 83760075--83760135 Score: 59
Period size: 17 Copynumber: 3.6 Consensus size: 16
83760065 GAACACAAGT
*
83760075 TTGCGAGCTCACCAAA
1 TTGCGAGCTCACAAAA
*
83760091 TGTGTGAGCTCGACAAAA
1 T-TGCGAGCTC-ACAAAA
*
83760109 TTGCGAGCTCATCAATA
1 TTGCGAGCTCA-CAAAA
*
83760126 GTGCGAGCTC
1 TTGCGAGCTC
83760136 TTTACCTTGC
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
16 2 0.05
17 29 0.78
18 6 0.16
ACGTcount: A:0.28, C:0.25, G:0.25, T:0.23
Consensus pattern (16 bp):
TTGCGAGCTCACAAAA
Found at i:83771039 original size:21 final size:21
Alignment explanation
Indices: 83771014--83771067 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 21
83771004 GTTTTTGAGA
*
83771014 AGGAAATTGCTGCTGCAGAAG
1 AGGAAATTGCTGCTGAAGAAG
*
83771035 AGGAAATTGTTGCTGAAGAAG
1 AGGAAATTGCTGCTGAAGAAG
* *
83771056 AAGAAGTTGCTG
1 AGGAAATTGCTG
83771068 AAAATAAGAA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.35, C:0.09, G:0.33, T:0.22
Consensus pattern (21 bp):
AGGAAATTGCTGCTGAAGAAG
Found at i:83777810 original size:2 final size:2
Alignment explanation
Indices: 83777803--83777829 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
83777793 ATGATTTGTG
83777803 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
83777830 GTTAAAATGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:83778646 original size:94 final size:95
Alignment explanation
Indices: 83778484--83778673 Score: 373
Period size: 94 Copynumber: 2.0 Consensus size: 95
83778474 ATAATTGAGT
83778484 TATGTTGTAAACATATTAGATTCCTTATTTGTTATTTATATACTTACTTACTAAGCTATAAGCTT
1 TATGTTGTAAACATATTAGATTCCTTATTTGTTATTTATATACTTACTTACTAAGCTATAAGCTT
83778549 ACTTTCTTTTCTCTCCTTTGTCTTATAATG
66 ACTTTCTTTTCTCTCCTTTGTCTTATAATG
83778579 TATGTTGTAAACATATTAGATTCCTTA-TTGTTATTTATATACTTACTTACTAAGCTATAAGCTT
1 TATGTTGTAAACATATTAGATTCCTTATTTGTTATTTATATACTTACTTACTAAGCTATAAGCTT
83778643 ACTTTCTTTTCTCTCCTTTGTCTTATAATG
66 ACTTTCTTTTCTCTCCTTTGTCTTATAATG
83778673 T
1 T
83778674 CATCCAGCTA
Statistics
Matches: 95, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
94 68 0.72
95 27 0.28
ACGTcount: A:0.25, C:0.16, G:0.08, T:0.51
Consensus pattern (95 bp):
TATGTTGTAAACATATTAGATTCCTTATTTGTTATTTATATACTTACTTACTAAGCTATAAGCTT
ACTTTCTTTTCTCTCCTTTGTCTTATAATG
Found at i:83784687 original size:29 final size:29
Alignment explanation
Indices: 83784654--83784755 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
83784644 TGACAAGATC
83784654 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
83784683 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
** * *
83784712 GGCACTAAGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
**
83784741 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
83784756 AGCTCGGAGG
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.27, C:0.16, G:0.33, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAATATAT
Found at i:83784759 original size:29 final size:29
Alignment explanation
Indices: 83784653--83784814 Score: 143
Period size: 29 Copynumber: 5.6 Consensus size: 29
83784643 GTGACAAGAT
*
83784653 CGGCACTAAGTGTGCGTGCTGGAAATATA
1 CGGCACTAAGTGTGCGAGCTGGAAATATA
* *
83784682 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 CGGCACTAAGTGTGCGAGCTGGAAATATA
* * *
83784711 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 CGGCACTAAGTGTGCGAGCTGGAAATATA
** **
83784740 CGGCACTGGGTGTGCGAGCTCGGAGGGTAT-
1 CGGCACTAAGTGTGCGAGCT-GGA-AATATA
** *
83784770 -GGCACTGTGTGTGCGAGCT-TAAAT-TA
1 CGGCACTAAGTGTGCGAGCTGGAAATATA
83784796 CGTGGCACTAAGTGTGCGA
1 C--GGCACTAAGTGTGCGA
83784815 AATCGAGTGG
Statistics
Matches: 110, Mismatches: 17, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
25 1 0.01
26 1 0.01
27 1 0.01
29 102 0.93
30 3 0.03
31 2 0.02
ACGTcount: A:0.25, C:0.17, G:0.34, T:0.24
Consensus pattern (29 bp):
CGGCACTAAGTGTGCGAGCTGGAAATATA
Found at i:83788272 original size:37 final size:36
Alignment explanation
Indices: 83788231--83788320 Score: 144
Period size: 37 Copynumber: 2.4 Consensus size: 36
83788221 AACTTGGAAA
*
83788231 TATGTTCCGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGTAAGACCCGATGACTACGTGTGGAGAT
83788268 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCC-GGTAAGACCCGATGACTACGTGTGGAGAT
83788305 TATGTCCGGGTAAGAC
1 TATGTCC-GGTAAGAC
83788321 TTAATAAGAT
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
36 3 0.06
37 48 0.94
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.26
Consensus pattern (36 bp):
TATGTCCGGTAAGACCCGATGACTACGTGTGGAGAT
Found at i:83790280 original size:40 final size:40
Alignment explanation
Indices: 83790186--83790599 Score: 190
Period size: 40 Copynumber: 10.4 Consensus size: 40
83790176 CATGAGCATT
* *
83790186 TGAATGATACCCGGGCTAAGTCCCGAAGGCATTTATGCTAG
1 TGAAT-ATACCCGGGCTAAGACCCGAAGGCATTTGTGCTAG
*
83790227 TGAATATATCCGGGCTAAGACCCGAAGGCATTTGTG-TGAG
1 TGAATATACCCGGGCTAAGACCCGAAGGCATTTGTGCT-AG
* * * *
83790267 TTG-TTATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTG
1 -TGAATATACCCGGGCTAAGACCCGAAGGCATTTGTGCTAG
** * * *** *
83790307 TGGTTATATCC-GGCTAA-TCGTTAA-GCATTCGTGCTAG
1 TGAATATACCCGGGCTAAGACCCGAAGGCATTTGTGCTAG
* * * ** *
83790344 TG-ATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAG
1 TGAATATACCCGGGCTAAGACCCGAAG-GCATTTGTGCTAG
* * * *
83790384 TG-ATGTATCCGGGCTAA-ATTCCGAAGAGCATTCGTGCTAG
1 TGAATATACCCGGGCTAAGA-CCCGAAG-GCATTTGTGCTAG
* * * ** *
83790424 TG-ATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAG
1 TGAATATACCCGGGCTAAGACCCGAAG-GCATTTGTGCTAG
* * * ** *
83790464 TG-ATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAG
1 TGAATATACCCGGGCTAAGACCCGAAG-GCATTTGTGCTAG
* * * *
83790504 TG-ATGTATCCGGGCTAA-ATTCCGAAGAGCATTCGTGCTAG
1 TGAATATACCCGGGCTAAGA-CCCGAAG-GCATTTGTGCTAG
* * * ** *
83790544 TG-ATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAG
1 TGAATATACCCGGGCTAAGACCCGAAG-GCATTTGTGCTAG
* *
83790584 TG-ATGTATCCGGGCTA
1 TGAATATACCCGGGCTA
83790600 GGTCCGAAGA
Statistics
Matches: 328, Mismatches: 33, Indels: 25
0.85 0.09 0.06
Matches are distributed among these distances:
36 6 0.02
37 17 0.05
38 6 0.02
39 8 0.02
40 283 0.86
41 8 0.02
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.28
Consensus pattern (40 bp):
TGAATATACCCGGGCTAAGACCCGAAGGCATTTGTGCTAG
Found at i:83790422 original size:80 final size:80
Alignment explanation
Indices: 83790330--83790612 Score: 505
Period size: 80 Copynumber: 3.5 Consensus size: 80
83790320 CTAATCGTTA
83790330 AGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCG
1 AGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCG
* *
83790395 GGCTAAATTCCGAAG
66 GACTAAGTTCCGAAG
83790410 AGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCG
1 AGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCG
83790475 GACTAAGTTCCGAAG
66 GACTAAGTTCCGAAG
* *
83790490 AGCATTCGTGCTAGTGATGTATCCGGGCTAAATTCCGAAGAGCATTCGTGCTAGTGATGTATCCG
1 AGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCG
83790555 GACTAAGTTCCGAAG
66 GACTAAGTTCCGAAG
* *
83790570 AGCATTCGTGCTAGTGATGTATCCGGGCT-AGGTCCGAAGAGCA
1 AGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCA
83790613 ATCATGCTGG
Statistics
Matches: 197, Mismatches: 6, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
79 12 0.06
80 185 0.94
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (80 bp):
AGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCG
GACTAAGTTCCGAAG
Found at i:83790477 original size:120 final size:120
Alignment explanation
Indices: 83790330--83790612 Score: 541
Period size: 120 Copynumber: 2.4 Consensus size: 120
83790320 CTAATCGTTA
83790330 AGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCG
1 AGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCG
83790395 GGCTAAATTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAG
66 GGCTAAATTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAG
83790450 AGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCG
1 AGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCG
83790515 GGCTAAATTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAG
66 GGCTAAATTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAG
* *
83790570 AGCATTCGTGCTAGTGATGTATCCGGGCT-AGGTCCGAAGAGCA
1 AGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCA
83790613 ATCATGCTGG
Statistics
Matches: 161, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
119 13 0.08
120 148 0.92
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (120 bp):
AGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCG
GGCTAAATTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAG
Found at i:83794409 original size:49 final size:47
Alignment explanation
Indices: 83794242--83794574 Score: 531
Period size: 47 Copynumber: 7.0 Consensus size: 47
83794232 TGTAGGAGAT
83794242 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGA
1 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGA
83794289 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGA
1 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGA
* * *
83794336 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGT
1 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGA
*
83794383 GTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGT
1 G--TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGA
*
83794432 GTATATACATGTGATAAGGCCTAATGGCCAATGTGATAAATGTGAAAGA
1 GTATAT--ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGA
* * *
83794481 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGT
1 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGA
*
83794528 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 G--TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
83794575 CATATGTGTG
Statistics
Matches: 268, Mismatches: 12, Indels: 10
0.92 0.04 0.03
Matches are distributed among these distances:
47 135 0.50
49 133 0.50
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.29
Consensus pattern (47 bp):
GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGA
Found at i:83794487 original size:145 final size:143
Alignment explanation
Indices: 83794243--83794574 Score: 619
Period size: 145 Copynumber: 2.3 Consensus size: 143
83794233 GTAGGAGATG
83794243 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCC
*
83794308 TAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
66 TAATGGCCAATGTGATAAATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
83794373 ATGTGAAGGTGTA
131 ATGTGAAGGTGTA
*
83794386 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATAT--ATGTGATAAGG
83794451 CCTAATGGCCAATGTGATAAATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
64 CCTAATGGCCAATGTGATAAATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
83794516 GAATGTGAAGGTGTA
129 GAATGTGAAGGTGTA
*
83794531 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
83794575 CATATGTGTG
Statistics
Matches: 184, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
143 51 0.28
145 133 0.72
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.29
Consensus pattern (143 bp):
TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCC
TAATGGCCAATGTGATAAATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
ATGTGAAGGTGTA
Found at i:83794622 original size:48 final size:48
Alignment explanation
Indices: 83794566--83794765 Score: 346
Period size: 48 Copynumber: 4.2 Consensus size: 48
83794556 CGATGTGATG
*
83794566 AATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
* *
83794614 AATGTGAAATATATGTGTGATGTGTATATGTGGTAAAGCCGAAGGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
*
83794662 AGTGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
* *
83794710 AATGTGAAATATATGTGTGATGTGTATGTGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
83794758 AATGTGAA
1 AATGTGAA
83794766 TGTTGTAACA
Statistics
Matches: 143, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 143 1.00
ACGTcount: A:0.32, C:0.07, G:0.29, T:0.32
Consensus pattern (48 bp):
AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
Found at i:83794876 original size:36 final size:37
Alignment explanation
Indices: 83794805--83794894 Score: 137
Period size: 36 Copynumber: 2.4 Consensus size: 37
83794795 AACTTGGAAA
*
83794805 TATGTTCTGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCTGGGTAAGACCCGATGACTACGTGTGGAGAT
*
83794843 TATGTCTGGGTAATACCCGATG-CTACGTGTGGAGAT
1 TATGTCTGGGTAAGACCCGATGACTACGTGTGGAGAT
*
83794879 TATGTCCGGGTAAGAC
1 TATGTCTGGGTAAGAC
83794895 TTCGTAATAA
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
36 28 0.58
37 16 0.33
38 4 0.08
ACGTcount: A:0.22, C:0.17, G:0.32, T:0.29
Consensus pattern (37 bp):
TATGTCTGGGTAAGACCCGATGACTACGTGTGGAGAT
Found at i:83797523 original size:24 final size:24
Alignment explanation
Indices: 83797491--83797540 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
83797481 TATTAGCAAG
83797491 TTAATTTTTGGGTTAAGGGCTAAA
1 TTAATTTTTGGGTTAAGGGCTAAA
83797515 TTAATTTTTGGGTTAAGGGCTAAA
1 TTAATTTTTGGGTTAAGGGCTAAA
83797539 TT
1 TT
83797541 GAAAAAATTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.28, C:0.04, G:0.24, T:0.44
Consensus pattern (24 bp):
TTAATTTTTGGGTTAAGGGCTAAA
Found at i:83799783 original size:43 final size:42
Alignment explanation
Indices: 83799644--83799807 Score: 220
Period size: 42 Copynumber: 3.9 Consensus size: 42
83799634 TTAGGGTTAC
* * *
83799644 TGAGATTACGTGTAAGACCATATCTAGGATATGGCATCTATA
1 TGAGATTACATGTAAGACCATATCTGGGATATGGCATCGATA
* * *
83799686 TGAGATTTCGTCTAAGACCATATCTGGGATATGGCATCGATA
1 TGAGATTACATGTAAGACCATATCTGGGATATGGCATCGATA
* * *
83799728 TGAGATTTCATGTAAGACCATAGCTGGGCTATTGGCATCGATA
1 TGAGATTACATGTAAGACCATATCTGGGATA-TGGCATCGATA
* *
83799771 CGAGATTACATGTAAGACCATATCTGGGACATGGCAT
1 TGAGATTACATGTAAGACCATATCTGGGATATGGCAT
83799808 TGGTACGGTA
Statistics
Matches: 108, Mismatches: 13, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
42 71 0.66
43 37 0.34
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.29
Consensus pattern (42 bp):
TGAGATTACATGTAAGACCATATCTGGGATATGGCATCGATA
Found at i:83799788 original size:85 final size:84
Alignment explanation
Indices: 83799644--83799807 Score: 220
Period size: 85 Copynumber: 1.9 Consensus size: 84
83799634 TTAGGGTTAC
* * * * * *
83799644 TGAGATTACGTGTAAGACCATATCTAGGATATGGCATCTATATGAGATTTCGTCTAAGACCATAT
1 TGAGATTACATGTAAGACCATAGCTAGGATATGGCATCGATACGAGATTACATCTAAGACCATAT
*
83799709 CTGGGATATGGCATCGATA
66 CTGGGACATGGCATCGATA
* * * *
83799728 TGAGATTTCATGTAAGACCATAGCTGGGCTATTGGCATCGATACGAGATTACATGTAAGACCATA
1 TGAGATTACATGTAAGACCATAGCTAGGATA-TGGCATCGATACGAGATTACATCTAAGACCATA
83799793 TCTGGGACATGGCAT
65 TCTGGGACATGGCAT
83799808 TGGTACGGTA
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
84 26 0.38
85 42 0.62
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.29
Consensus pattern (84 bp):
TGAGATTACATGTAAGACCATAGCTAGGATATGGCATCGATACGAGATTACATCTAAGACCATAT
CTGGGACATGGCATCGATA
Found at i:83803677 original size:25 final size:24
Alignment explanation
Indices: 83803632--83803684 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 24
83803622 AGCTTCCTGA
*
83803632 TATACAGCTTGATTGAACTTCCCAT
1 TATACAGCTTGAATGAACTT-CCAT
*
83803657 TATACAGCTT-ACATGAGCTTCCAT
1 TATACAGCTTGA-ATGAACTTCCAT
83803681 TATA
1 TATA
83803685 TGGGTCGAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 9 0.36
25 16 0.64
ACGTcount: A:0.30, C:0.23, G:0.11, T:0.36
Consensus pattern (24 bp):
TATACAGCTTGAATGAACTTCCAT
Found at i:83807089 original size:169 final size:169
Alignment explanation
Indices: 83806810--83807147 Score: 622
Period size: 169 Copynumber: 2.0 Consensus size: 169
83806800 TTATTTTCCA
*
83806810 TTTTAGACATTGGTTTAATTACTATTTTAGTCCTTTAGTAATTAAAAATTTATAGTAACTAATTT
1 TTTTAGACATTGGTTTAATTACTATTTTAGTCCTTTAGTAATTAAAAATTTATAGCAACTAATTT
* *
83806875 TTACTATTTTTATAATTTAGTCTTTATACCACAATTAATCACTGATTTGATAAAATTTCCTATCC
66 TTACCATTTTTACAATTTAGTCTTTATACCACAATTAATCACTGATTTGATAAAATTTCCTATCC
83806940 AAAATTTAATTCATCTATATAATAATACCACAATTATTT
131 AAAATTTAATTCATCTATATAATAATACCACAATTATTT
* *
83806979 TTTTAGACATTGGTTTAATTACTATTTTAGTCCTTTAGTAATTAAAATTTTATAGCAATTAATTT
1 TTTTAGACATTGGTTTAATTACTATTTTAGTCCTTTAGTAATTAAAAATTTATAGCAACTAATTT
83807044 TTACCATTTTTACAATTTAGTCTTTATACCACAATTAATCACTGATTTGATAAAATTTCCTATCC
66 TTACCATTTTTACAATTTAGTCTTTATACCACAATTAATCACTGATTTGATAAAATTTCCTATCC
*
83807109 AAAATTTAATTCATCTATATAATAATACCATAATTATTT
131 AAAATTTAATTCATCTATATAATAATACCACAATTATTT
83807148 AATAAAGATA
Statistics
Matches: 163, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
169 163 1.00
ACGTcount: A:0.36, C:0.13, G:0.05, T:0.46
Consensus pattern (169 bp):
TTTTAGACATTGGTTTAATTACTATTTTAGTCCTTTAGTAATTAAAAATTTATAGCAACTAATTT
TTACCATTTTTACAATTTAGTCTTTATACCACAATTAATCACTGATTTGATAAAATTTCCTATCC
AAAATTTAATTCATCTATATAATAATACCACAATTATTT
Found at i:83808002 original size:30 final size:31
Alignment explanation
Indices: 83807953--83808033 Score: 76
Period size: 30 Copynumber: 2.7 Consensus size: 31
83807943 TTTAATAGTT
* * *
83807953 TATATTTTTTATAAATTTTAAAGAATTAAAT
1 TATAATTTTTATAATTTTTAAAGAATTAAAG
* * **
83807984 TA-AATTTTTATTATTTTTAGAGGGTTAAAG
1 TATAATTTTTATAATTTTTAAAGAATTAAAG
*
83808014 TATAA-TTTTATCATTTTTAA
1 TATAATTTTTATAATTTTTAA
83808034 TATAAAATTT
Statistics
Matches: 40, Mismatches: 9, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
30 36 0.90
31 4 0.10
ACGTcount: A:0.38, C:0.01, G:0.07, T:0.53
Consensus pattern (31 bp):
TATAATTTTTATAATTTTTAAAGAATTAAAG
Found at i:83821741 original size:26 final size:26
Alignment explanation
Indices: 83821697--83821746 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
83821687 CTGAAGGAAG
*
83821697 GGGGGAGAGAGAGAGAGGATGAAGGT
1 GGGGGAGAGAGAGAGAGGAAGAAGGT
*
83821723 GGGGGAGAGTG-GAGAAGGAAGAAG
1 GGGGGAGAGAGAGAG-AGGAAGAAG
83821747 AAAAATAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 3 0.14
26 18 0.86
ACGTcount: A:0.36, C:0.00, G:0.58, T:0.06
Consensus pattern (26 bp):
GGGGGAGAGAGAGAGAGGAAGAAGGT
Found at i:83822102 original size:19 final size:21
Alignment explanation
Indices: 83822075--83822123 Score: 57
Period size: 19 Copynumber: 2.4 Consensus size: 21
83822065 GATTTTTTTA
83822075 ATTTAACTCGA-ACAAATTT-
1 ATTTAACTCGAGACAAATTTC
* *
83822094 ATTTGACTCGAGTCAAATTTC
1 ATTTAACTCGAGACAAATTTC
*
83822115 ATTTCACTC
1 ATTTAACTC
83822124 TACTCGATTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
19 10 0.40
20 7 0.28
21 8 0.32
ACGTcount: A:0.33, C:0.20, G:0.08, T:0.39
Consensus pattern (21 bp):
ATTTAACTCGAGACAAATTTC
Found at i:83823012 original size:2 final size:2
Alignment explanation
Indices: 83822973--83823003 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
83822963 TCCCCAACTT
83822973 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
83823004 TGCATATATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:83827589 original size:32 final size:32
Alignment explanation
Indices: 83827551--83827616 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
83827541 TTGATTGCCT
83827551 AAGTTCAAATTGAAGATAAGTGGCATTATAAG
1 AAGTTCAAATTGAAGATAAGTGGCATTATAAG
83827583 AAGTTCAAATTGAAGATAAGTGGCATTATAAG
1 AAGTTCAAATTGAAGATAAGTGGCATTATAAG
83827615 AA
1 AA
83827617 CGTTTACATT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.45, C:0.06, G:0.21, T:0.27
Consensus pattern (32 bp):
AAGTTCAAATTGAAGATAAGTGGCATTATAAG
Found at i:83829266 original size:13 final size:12
Alignment explanation
Indices: 83829237--83829291 Score: 57
Period size: 11 Copynumber: 4.8 Consensus size: 12
83829227 TTAATAAGAT
83829237 TTAATATTAA-A
1 TTAATATTAATA
83829248 TCTAATATTTAATA
1 T-TAATA-TTAATA
83829262 TTAATA--AATA
1 TTAATATTAATA
83829272 TT-ATATTAAT-
1 TTAATATTAATA
83829282 TTAATATTAA
1 TTAATATTAA
83829292 AGTGATTAAG
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
9 3 0.08
10 8 0.21
11 11 0.29
12 5 0.13
13 9 0.24
14 2 0.05
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (12 bp):
TTAATATTAATA
Found at i:83829285 original size:5 final size:6
Alignment explanation
Indices: 83829237--83829291 Score: 57
Period size: 6 Copynumber: 9.7 Consensus size: 6
83829227 TTAATAAGAT
83829237 TTAATA TTAA-A TCTAATA TTTAATA TTAATA --AATA TT-ATA TTAAT-
1 TTAATA TTAATA T-TAATA -TTAATA TTAATA TTAATA TTAATA TTAATA
83829282 TTAATA TTAA
1 TTAATA TTAA
83829292 AGTGATTAAG
Statistics
Matches: 42, Mismatches: 0, Indels: 14
0.75 0.00 0.25
Matches are distributed among these distances:
4 4 0.10
5 12 0.29
6 19 0.45
7 6 0.14
8 1 0.02
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (6 bp):
TTAATA
Found at i:83829289 original size:16 final size:16
Alignment explanation
Indices: 83829240--83829290 Score: 50
Period size: 16 Copynumber: 3.1 Consensus size: 16
83829230 ATAAGATTTA
*
83829240 ATATTAAATCTAATATTT
1 ATATT-AATTTAATA-TT
*
83829258 AATATTAA-TAAATATT
1 -ATATTAATTTAATATT
83829274 ATATTAATTTAATATT
1 ATATTAATTTAATATT
83829290 A
1 A
83829291 AAGTGATTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
15 7 0.25
16 10 0.36
17 4 0.14
18 2 0.07
19 5 0.18
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (16 bp):
ATATTAATTTAATATT
Found at i:83831208 original size:9 final size:9
Alignment explanation
Indices: 83831191--83831221 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
83831181 TTACATATTA
83831191 AATTCGGTT
1 AATTCGGTT
*
83831200 AATTTGGTT
1 AATTCGGTT
83831209 AATTCGGTT
1 AATTCGGTT
83831218 AATT
1 AATT
83831222 TTTTTATATG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.06, G:0.19, T:0.48
Consensus pattern (9 bp):
AATTCGGTT
Found at i:83831357 original size:94 final size:98
Alignment explanation
Indices: 83831198--83831375 Score: 265
Period size: 94 Copynumber: 1.8 Consensus size: 98
83831188 TTAAATTCGG
* * *
83831198 TTAATTTGGTTAATTCGGTTAATTTTTTTATATGTTTTATACTTGTTTTAACCAAAAAGC-AAAA
1 TTAATTTGGTTAATTCAGTTAA-TTTTTTATATGTGTTATACTTGTTTTAACCAAAAAACAAAAA
*
83831262 A-AAAACCATATAAATTTCGGTTATTTTGTTCAA
65 ATAAAAACATATAAATTTCGGTTATTTTGTTCAA
* *
83831295 TTAATTTGGTTAATTCAGTTAA-TTTTT-TATGTGTTATACTTGTTTTAGCCAAAAAATAAAAAA
1 TTAATTTGGTTAATTCAGTTAATTTTTTATATGTGTTATACTTGTTTTAACCAAAAAACAAAAAA
83831358 TAAAAACATATAAATTTC
66 TAAAAACATATAAATTTC
83831376 AGTTGTTTCA
Statistics
Matches: 73, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
94 26 0.36
95 10 0.14
96 16 0.22
97 21 0.29
ACGTcount: A:0.38, C:0.08, G:0.10, T:0.44
Consensus pattern (98 bp):
TTAATTTGGTTAATTCAGTTAATTTTTTATATGTGTTATACTTGTTTTAACCAAAAAACAAAAAA
TAAAAACATATAAATTTCGGTTATTTTGTTCAA
Found at i:83835208 original size:19 final size:19
Alignment explanation
Indices: 83835184--83835229 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
83835174 TTTTCTTTCA
83835184 ATTTAGACATCGCATTAAG
1 ATTTAGACATCGCATTAAG
83835203 ATTTAGACATCGCATTAAG
1 ATTTAGACATCGCATTAAG
*
83835222 GTTTAGAC
1 ATTTAGAC
83835230 TCATAACAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33
Consensus pattern (19 bp):
ATTTAGACATCGCATTAAG
Found at i:83836551 original size:17 final size:18
Alignment explanation
Indices: 83836521--83836570 Score: 59
Period size: 17 Copynumber: 2.8 Consensus size: 18
83836511 TGTATTATAA
83836521 TATTAATTAATAAAA-AT
1 TATTAATTAATAAAATAT
* *
83836538 TATTACTTATTAAAATAT
1 TATTAATTAATAAAATAT
83836556 TATT-ATCTAATAAAA
1 TATTAAT-TAATAAAA
83836571 ATATCATTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
17 14 0.52
18 13 0.48
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (18 bp):
TATTAATTAATAAAATAT
Found at i:83854621 original size:22 final size:22
Alignment explanation
Indices: 83854596--83854639 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
83854586 ATTCATTAGT
83854596 TACCTTACAATTGTAATGCAAG
1 TACCTTACAATTGTAATGCAAG
83854618 TACCTTACAATTGTAATGCAAG
1 TACCTTACAATTGTAATGCAAG
83854640 AATAACTTAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.36, C:0.18, G:0.14, T:0.32
Consensus pattern (22 bp):
TACCTTACAATTGTAATGCAAG
Found at i:83856585 original size:43 final size:43
Alignment explanation
Indices: 83856518--83856639 Score: 131
Period size: 43 Copynumber: 2.9 Consensus size: 43
83856508 ACATAGCTCG
* * ** *
83856518 TACAATGCC-ATATCTCAGATATGGTCTTACTTGTTATCAC-A
1 TACAATGCCAATGTCTCAGACATGGTCTTACACGTAATCACAA
* *
83856559 TATCGATGCCAATGTCTCAGACATGGTCTTACACGTAATCTCAA
1 TA-CAATGCCAATGTCTCAGACATGGTCTTACACGTAATCACAA
* * *
83856603 TACAATGCCAATGTCCCAGACATGGTCTCACATGTAA
1 TACAATGCCAATGTCTCAGACATGGTCTTACACGTAA
83856640 ATACATCTCG
Statistics
Matches: 67, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
41 2 0.03
42 6 0.09
43 56 0.84
44 3 0.04
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (43 bp):
TACAATGCCAATGTCTCAGACATGGTCTTACACGTAATCACAA
Found at i:83858309 original size:10 final size:10
Alignment explanation
Indices: 83858294--83858336 Score: 50
Period size: 10 Copynumber: 4.1 Consensus size: 10
83858284 TCGAAAATAA
*
83858294 AAAATTAATC
1 AAAATTAATT
83858304 AAAATTAATTAT
1 AAAATTAA-T-T
83858316 AAAATTAATT
1 AAAATTAATT
*
83858326 AAAATTCATT
1 AAAATTAATT
83858336 A
1 A
83858337 TGTTAATAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
10 19 0.66
11 2 0.07
12 8 0.28
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (10 bp):
AAAATTAATT
Found at i:83858319 original size:22 final size:22
Alignment explanation
Indices: 83858294--83858337 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
83858284 TCGAAAATAA
83858294 AAAATTAATCAAAATTAATTAT
1 AAAATTAATCAAAATTAATTAT
* *
83858316 AAAATTAATTAAAATTCATTAT
1 AAAATTAATCAAAATTAATTAT
83858338 GTTAATAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.39
Consensus pattern (22 bp):
AAAATTAATCAAAATTAATTAT
Found at i:83860702 original size:50 final size:51
Alignment explanation
Indices: 83860625--83860753 Score: 199
Period size: 50 Copynumber: 2.5 Consensus size: 51
83860615 GACCATGGCA
*
83860625 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGA-AAAGTG
1 ACAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGGACAAA-TG
*
83860676 A-AAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAATGACAAATG
1 ACAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGGACAAATG
* *
83860726 ACAAGTGAAAAGTGGTAGCTTCAGCTAC
1 ACAAGTGATAAGTGATAGCTTCAGCTAC
83860754 CTGATCAGTG
Statistics
Matches: 72, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
50 44 0.61
51 28 0.39
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.26
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGGACAAATG
Found at i:83860767 original size:31 final size:31
Alignment explanation
Indices: 83860729--83860906 Score: 263
Period size: 31 Copynumber: 5.8 Consensus size: 31
83860719 ACAAATGACA
*
83860729 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
83860760 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
83860791 AGTGAAAAGTGGTAG-TTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTT-CGGCTACCTGATC
*
83860822 --TGAAAAGTGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
83860851 AGTGAAAAATGGTAGCTTCGGCTACCTAATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
83860882 AGTGAATAGTGGTAGCTTTGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
83860907 AAGTGACAAG
Statistics
Matches: 134, Mismatches: 9, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
29 26 0.19
30 3 0.02
31 105 0.78
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:83860850 original size:60 final size:61
Alignment explanation
Indices: 83860729--83860898 Score: 245
Period size: 60 Copynumber: 2.8 Consensus size: 61
83860719 ACAAATGACA
* * *
83860729 AGTGAAAAGTGGTAGCTTCAGCTACCTGATCAGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATCA-TGAAAAGTGGTAGCTCCGGCTACCTGATC
83860791 AGTGAAAAGTGGTAG-TTCCGGCTACCTGATC-TGAAAAGTGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTT-CGGCTACCTGATCATGAAAAGTGGTAGCTCCGGCTACCTGATC
* * *
83860851 AGTGAAAAATGGTAGCTTCGGCTACCTAATCAGTGAATAGTGGTAGCT
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATCA-TGAAAAGTGGTAGCT
83860899 TTGGCTACAA
Statistics
Matches: 98, Mismatches: 6, Indels: 8
0.88 0.05 0.07
Matches are distributed among these distances:
60 53 0.54
61 4 0.04
62 41 0.42
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (61 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATCATGAAAAGTGGTAGCTCCGGCTACCTGATC
Found at i:83860854 original size:24 final size:25
Alignment explanation
Indices: 83860797--83860851 Score: 65
Period size: 29 Copynumber: 2.0 Consensus size: 25
83860787 GATCAGTGAA
*
83860797 AAGTGGTAGTTCCGGCTACCTGATC
1 AAGTGGTAGCTCCGGCTACCTGATC
83860822 TGAAAAGTGGTAGCTCCGGCTACCTGATC
1 ----AAGTGGTAGCTCCGGCTACCTGATC
83860851 A
1 A
83860852 GTGAAAAATG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
25 1 0.04
29 24 0.96
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (25 bp):
AAGTGGTAGCTCCGGCTACCTGATC
Found at i:83860906 original size:91 final size:91
Alignment explanation
Indices: 83860731--83860896 Score: 278
Period size: 91 Copynumber: 1.8 Consensus size: 91
83860721 AAATGACAAG
* * * *
83860731 TGAAAAGTGGTAGCTTCAGCTACCTGATCAGTGAAAAGTGGTAGCTTCTGCTACCTGATCAGTGA
1 TGAAAAGTGGTAGCTCCAGCTACCTGATCAGTGAAAAATGGTAGCTTCGGCTACCTAATCAGTGA
83860796 AAAGTGGTAGTTCCGGCTACCTGATC
66 AAAGTGGTAGTTCCGGCTACCTGATC
*
83860822 TGAAAAGTGGTAGCTCCGGCTACCTGATCAGTGAAAAATGGTAGCTTCGGCTACCTAATCAGTGA
1 TGAAAAGTGGTAGCTCCAGCTACCTGATCAGTGAAAAATGGTAGCTTCGGCTACCTAATCAGTGA
*
83860887 ATAGTGGTAG
66 AAAGTGGTAG
83860897 CTTTGGCTAC
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
91 69 1.00
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.27
Consensus pattern (91 bp):
TGAAAAGTGGTAGCTCCAGCTACCTGATCAGTGAAAAATGGTAGCTTCGGCTACCTAATCAGTGA
AAAGTGGTAGTTCCGGCTACCTGATC
Found at i:83860917 original size:7 final size:7
Alignment explanation
Indices: 83860905--83860933 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
83860895 AGCTTTGGCT
83860905 ACAAGTG
1 ACAAGTG
83860912 ACAAGTG
1 ACAAGTG
83860919 ACAAGTG
1 ACAAGTG
83860926 ACAAGTG
1 ACAAGTG
83860933 A
1 A
83860934 TTTCCGTATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.45, C:0.14, G:0.28, T:0.14
Consensus pattern (7 bp):
ACAAGTG
Found at i:83861008 original size:47 final size:46
Alignment explanation
Indices: 83860938--83861102 Score: 160
Period size: 47 Copynumber: 3.7 Consensus size: 46
83860928 AAGTGATTTC
* * *
83860938 CGTATAAGACCATATTTGGGATATGGCATCGGTGTGATATATGCTA
1 CGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
* * *
83860984 CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATGTGATT
1 C-GTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
* * *
83861031 CGTGTAAGACCATAGCTGGGCTATGGCATC-----GATATATGAATA
1 CGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATG-ATA
* * * *
83861073 TGTGTAAGACCATAGCTGGGCTATGGCATC
1 CGTATAAGACCATATCTGGGATATGGCATC
83861103 ATTATGTGAA
Statistics
Matches: 105, Mismatches: 12, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
41 7 0.07
42 31 0.30
46 27 0.26
47 40 0.38
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (46 bp):
CGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
Found at i:83861090 original size:42 final size:43
Alignment explanation
Indices: 83861032--83861146 Score: 171
Period size: 42 Copynumber: 2.7 Consensus size: 43
83861022 TATGTGATTC
*
83861032 GTGTAAGACCATAGCTGGGCTATGGCATCGA-TATATGAATAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
*
83861074 GTGTAAGACCATAGCTGGGCTATGGCATC-ATTATGTGAAGAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
* **
83861116 GTGTAAGACCATAGTTGAACTATGGCATCGA
1 GTGTAAGACCATAGCTGGGCTATGGCATCGA
83861147 GAAAACGAAG
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
41 1 0.02
42 64 0.97
43 1 0.02
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.28
Consensus pattern (43 bp):
GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
Found at i:83861327 original size:13 final size:13
Alignment explanation
Indices: 83861309--83861339 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
83861299 TTCATCTTGA
83861309 ATGTACTGTCCAT
1 ATGTACTGTCCAT
83861322 ATGTACTGTCCAT
1 ATGTACTGTCCAT
83861335 ATGTA
1 ATGTA
83861340 TTGATAATTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (13 bp):
ATGTACTGTCCAT
Found at i:83862413 original size:34 final size:34
Alignment explanation
Indices: 83862365--83862433 Score: 120
Period size: 34 Copynumber: 2.0 Consensus size: 34
83862355 CACCTTGACA
* *
83862365 TACATGTTGGGGTTGATCGCTGATTTCATCTCAT
1 TACACGTTGGGGTTGATCGCTGACTTCATCTCAT
83862399 TACACGTTGGGGTTGATCGCTGACTTCATCTCAT
1 TACACGTTGGGGTTGATCGCTGACTTCATCTCAT
83862433 T
1 T
83862434 CCTCCATGGT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.17, C:0.20, G:0.23, T:0.39
Consensus pattern (34 bp):
TACACGTTGGGGTTGATCGCTGACTTCATCTCAT
Found at i:83862450 original size:32 final size:33
Alignment explanation
Indices: 83862374--83862450 Score: 93
Period size: 34 Copynumber: 2.3 Consensus size: 33
83862364 ATACATGTTG
* **
83862374 GGGTTGATCGCTGATTTCATCTCATTACACGTT
1 GGGTTGATCGCTGACTTCATCTCATTACACCAT
* *
83862407 GGGGTTGATCGCTGACTTCATCTCATTCCTCCAT
1 -GGGTTGATCGCTGACTTCATCTCATTACACCAT
83862441 -GGTTGATCGC
1 GGGTTGATCGC
83862451 GACCATGTCC
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
32 10 0.26
34 28 0.74
ACGTcount: A:0.16, C:0.25, G:0.23, T:0.36
Consensus pattern (33 bp):
GGGTTGATCGCTGACTTCATCTCATTACACCAT
Found at i:83864555 original size:14 final size:13
Alignment explanation
Indices: 83864531--83864571 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 13
83864521 TTTAAAATGT
83864531 AATTGAGAATTGAA
1 AATTGA-AATTGAA
83864545 AATTCGAAATTGAA
1 AATT-GAAATTGAA
83864559 AATTGAATATTGA
1 AATTGAA-ATTGA
83864572 GGATTGATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
13 3 0.12
14 20 0.80
15 2 0.08
ACGTcount: A:0.49, C:0.02, G:0.17, T:0.32
Consensus pattern (13 bp):
AATTGAAATTGAA
Found at i:83873734 original size:19 final size:19
Alignment explanation
Indices: 83873710--83873752 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
83873700 AATCTGGAGA
*
83873710 AGTTACAGAAAATGGGTTT
1 AGTTACAGAAAATCGGTTT
* *
83873729 AGTTACATAAAATCGTTTT
1 AGTTACAGAAAATCGGTTT
83873748 AGTTA
1 AGTTA
83873753 TTCAACTCAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.37, C:0.07, G:0.19, T:0.37
Consensus pattern (19 bp):
AGTTACAGAAAATCGGTTT
Found at i:83883651 original size:20 final size:20
Alignment explanation
Indices: 83883628--83883675 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
83883618 TAAATTCTAA
*
83883628 AAAGATAAATACAA-TTAATT
1 AAAGATAAATA-AAGATAATT
83883648 AAAGATAAATAAAGATAATT
1 AAAGATAAATAAAGATAATT
83883668 AAA-ATAAA
1 AAAGATAAA
83883676 ATCCTAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
19 7 0.27
20 19 0.73
ACGTcount: A:0.67, C:0.02, G:0.06, T:0.25
Consensus pattern (20 bp):
AAAGATAAATAAAGATAATT
Found at i:83883700 original size:27 final size:26
Alignment explanation
Indices: 83883670--83883731 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 26
83883660 AGATAATTAA
83883670 AATAAAATCCTAAAATTAAATAATCCT
1 AATAAAATCCTAAAATT-AATAATCCT
* * * *
83883697 AATAATTATCTTAATATTAATTATCCT
1 AATAA-AATCCTAAAATTAATAATCCT
83883724 AATAAAAT
1 AATAAAAT
83883732 GGAGTCTTAT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
26 2 0.07
27 18 0.62
28 9 0.31
ACGTcount: A:0.52, C:0.11, G:0.00, T:0.37
Consensus pattern (26 bp):
AATAAAATCCTAAAATTAATAATCCT
Found at i:83891363 original size:15 final size:15
Alignment explanation
Indices: 83891343--83891375 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
83891333 TTCACATTGT
83891343 ATGAACTTTGTGAAC
1 ATGAACTTTGTGAAC
83891358 ATGAACTTTGTGAAC
1 ATGAACTTTGTGAAC
83891373 ATG
1 ATG
83891376 CTTTTGTCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.33, C:0.12, G:0.21, T:0.33
Consensus pattern (15 bp):
ATGAACTTTGTGAAC
Found at i:83892849 original size:21 final size:20
Alignment explanation
Indices: 83892816--83892861 Score: 58
Period size: 21 Copynumber: 2.3 Consensus size: 20
83892806 AACGATTCAA
*
83892816 ATAATATTATTTAAATAATT
1 ATAATATTATTTAAAAAATT
*
83892836 ATAATTATTTTTTAAAAAATT
1 ATAA-TATTATTTAAAAAATT
83892857 A-AATA
1 ATAATA
83892862 ATATAATCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 2 0.09
20 6 0.26
21 15 0.65
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (20 bp):
ATAATATTATTTAAAAAATT
Found at i:83900356 original size:19 final size:19
Alignment explanation
Indices: 83900310--83900357 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 19
83900300 GTATATATTT
83900310 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
*
83900328 TAAATCTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
*
83900347 TAAGTTTTATT
1 TAAATTTTATT
83900358 CATATTCTAG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
18 4 0.15
19 22 0.85
ACGTcount: A:0.35, C:0.02, G:0.15, T:0.48
Consensus pattern (19 bp):
TAAATTTTATTTAGGTAGA
Found at i:83900433 original size:41 final size:41
Alignment explanation
Indices: 83900374--83900461 Score: 158
Period size: 41 Copynumber: 2.1 Consensus size: 41
83900364 CTAGGAATAT
*
83900374 TTTTATTTTATCTTTTAGTAGTTTATTAGAATAAGGGAACTA
1 TTTT-TTTTATATTTTAGTAGTTTATTAGAATAAGGGAACTA
83900416 TTTTTTTTATATTTTAGTAGTTTATTAGAATAAGGGAACTA
1 TTTTTTTTATATTTTAGTAGTTTATTAGAATAAGGGAACTA
83900457 TTTTT
1 TTTTT
83900462 CCAATTAGGA
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
41 41 0.91
42 4 0.09
ACGTcount: A:0.30, C:0.03, G:0.14, T:0.53
Consensus pattern (41 bp):
TTTTTTTTATATTTTAGTAGTTTATTAGAATAAGGGAACTA
Found at i:83903202 original size:19 final size:19
Alignment explanation
Indices: 83903156--83903203 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 19
83903146 GTATATATTT
*
83903156 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAAGTAGA
*
83903174 TAAATCTTATTTAAGTAGA
1 TAAATTTTATTTAAGTAGA
*
83903193 TAAGTTTTATT
1 TAAATTTTATT
83903204 CATATTCTAG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
18 4 0.16
19 21 0.84
ACGTcount: A:0.38, C:0.02, G:0.12, T:0.48
Consensus pattern (19 bp):
TAAATTTTATTTAAGTAGA
Found at i:83903308 original size:42 final size:42
Alignment explanation
Indices: 83903220--83903308 Score: 142
Period size: 42 Copynumber: 2.1 Consensus size: 42
83903210 CTAGGAACAT
* * *
83903220 TTTTATTTTATCTTTTAATAGTTTATTAGAATAATGGAACTA
1 TTTTCTTTTATATTTTAATAGTTTATTAGAATAAGGGAACTA
*
83903262 TTTTCTTTTATATTTTAGTAGTTTATTAGAATAAGGGAACTA
1 TTTTCTTTTATATTTTAATAGTTTATTAGAATAAGGGAACTA
83903304 TTTTC
1 TTTTC
83903309 CCAATTAGGA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.30, C:0.06, G:0.11, T:0.53
Consensus pattern (42 bp):
TTTTCTTTTATATTTTAATAGTTTATTAGAATAAGGGAACTA
Found at i:83904376 original size:64 final size:62
Alignment explanation
Indices: 83904300--83904518 Score: 157
Period size: 64 Copynumber: 3.4 Consensus size: 62
83904290 TTCATGATAC
* *
83904300 ATACTTTAACATTTCATGCAAATATAATATAGAAAATGATAAATAACGACATTAATTTCATAAT
1 ATACATTAACATTTCATGCAAATATAATATAGAAAATAATAAATAAC-ACATTAATTT-ATAAT
* * * * *
83904364 ATACATTAACATTTCATGTAGATATAATCATA-AATAA-CATAAAT-A-ACA-TAA-ATAT-AC
1 ATACATTAACATTTCATGCAAATATAAT-ATAGAA-AATAATAAATAACACATTAATTTATAAT
* *
83904421 ATACATTAACATTTCATGCGAAATACAACATAGAAAATAATGAATATAACA-ATATAAATTACAT
1 ATACATTAACATTTCATGC-AAATATAATATAGAAAATAAT-AA-ATAACACAT-T-AATT---T
83904485 AATATAT
58 -ATA-AT
* *
83904492 ATACAATAATATTTCATGCAAATATAA
1 ATACATTAACATTTCATGCAAATATAA
83904519 CTTAGAATAA
Statistics
Matches: 120, Mismatches: 16, Indels: 32
0.71 0.10 0.19
Matches are distributed among these distances:
57 24 0.20
58 12 0.10
59 3 0.03
60 5 0.04
61 5 0.04
62 1 0.01
63 2 0.02
64 35 0.29
65 5 0.04
68 1 0.01
69 2 0.02
70 7 0.06
71 18 0.15
ACGTcount: A:0.52, C:0.11, G:0.05, T:0.32
Consensus pattern (62 bp):
ATACATTAACATTTCATGCAAATATAATATAGAAAATAATAAATAACACATTAATTTATAAT
Found at i:83904422 original size:19 final size:19
Alignment explanation
Indices: 83904387--83904423 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
83904377 TCATGTAGAT
83904387 ATAATCATAAATAACATAA
1 ATAATCATAAATAACATAA
83904406 ATAA-CATAAATATACATA
1 ATAATCATAAATA-ACATA
83904424 CATTAACATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.62, C:0.11, G:0.00, T:0.27
Consensus pattern (19 bp):
ATAATCATAAATAACATAA
Found at i:83904432 original size:10 final size:9
Alignment explanation
Indices: 83904387--83904423 Score: 56
Period size: 9 Copynumber: 3.9 Consensus size: 9
83904377 TCATGTAGAT
83904387 ATAATCATAA
1 ATAA-CATAA
83904397 ATAACATAA
1 ATAACATAA
83904406 ATAACATAA
1 ATAACATAA
83904415 ATATACATA
1 ATA-ACATA
83904424 CATTAACATT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
9 17 0.65
10 9 0.35
ACGTcount: A:0.62, C:0.11, G:0.00, T:0.27
Consensus pattern (9 bp):
ATAACATAA
Found at i:83904539 original size:71 final size:73
Alignment explanation
Indices: 83904402--83904545 Score: 170
Period size: 71 Copynumber: 2.0 Consensus size: 73
83904392 CATAAATAAC
* * *
83904402 ATAAATAACATAAATATACATACATTAACATTTCATGCGAAATACAACATAGAAAATAATGAATA
1 ATAAATAACATAAATATACATACAATAACATTTCATGCGAAATACAACATAGAAAACAATCAATA
83904467 TAA-CAAT
66 TAATCAAT
* * * * *
83904474 ATAAATTACAT-AATATATATACAATAATATTTCATGC-AAATATAACTTAGAATAACAA-CATA
1 ATAAATAACATAAATATACATACAATAACATTTCATGCGAAATACAACATAGAA-AACAATCA-A
83904536 TATAATCAAT
64 TATAATCAAT
83904546 TTTCATGCAA
Statistics
Matches: 61, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
70 14 0.23
71 33 0.54
72 14 0.23
ACGTcount: A:0.54, C:0.12, G:0.04, T:0.30
Consensus pattern (73 bp):
ATAAATAACATAAATATACATACAATAACATTTCATGCGAAATACAACATAGAAAACAATCAATA
TAATCAAT
Found at i:83904583 original size:18 final size:18
Alignment explanation
Indices: 83904560--83904594 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
83904550 ATGCAAATAT
*
83904560 ATAAAAACAATAAATAAC
1 ATAAAAACAACAAATAAC
*
83904578 ATAAAAATAACAAATAA
1 ATAAAAACAACAAATAA
83904595 TTTATGAGAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.74, C:0.09, G:0.00, T:0.17
Consensus pattern (18 bp):
ATAAAAACAACAAATAAC
Found at i:83904643 original size:21 final size:19
Alignment explanation
Indices: 83904619--83904657 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 19
83904609 TTAACTTACT
*
83904619 AAAATAATACTAAATAAATAC
1 AAAAAAATAC-AAA-AAATAC
83904640 AAAAAAATACAAAAAATA
1 AAAAAAATACAAAAAATA
83904658 AATAAACAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 3 0.18
21 9 0.53
ACGTcount: A:0.74, C:0.08, G:0.00, T:0.18
Consensus pattern (19 bp):
AAAAAAATACAAAAAATAC
Found at i:83904990 original size:12 final size:12
Alignment explanation
Indices: 83904973--83905026 Score: 54
Period size: 12 Copynumber: 4.2 Consensus size: 12
83904963 AAAATTATAC
83904973 ATAATATAATAA
1 ATAATATAATAA
*
83904985 ATAATATAGTAA
1 ATAATATAATAA
*
83904997 ATAATACATAAAAAA
1 ATAAT--AT-AATAA
*
83905012 ATAATAAAATAA
1 ATAATATAATAA
83905024 ATA
1 ATA
83905027 TTTTTTTTAC
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
12 23 0.68
13 1 0.03
14 2 0.06
15 8 0.24
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.28
Consensus pattern (12 bp):
ATAATATAATAA
Found at i:83906566 original size:45 final size:45
Alignment explanation
Indices: 83906511--83907198 Score: 338
Period size: 45 Copynumber: 15.4 Consensus size: 45
83906501 TAACTCAGCA
83906511 ATGTCAAATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAG
1 ATGTCAAATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAG
* * * * * *
83906556 ATGACAAATCTG-TCATCTTCGATCTGCT--TCGATGTAAACACATAA
1 ATGTCAAATCTGCT-ATCTTCGATCTGCTCCCCG-TCT-AATACAGAG
* * *
83906601 ATGTCAGATCTGCTATCTTCGATCTGCTCCCAGTCTAATACAAAG
1 ATGTCAAATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAG
* * * * * **** * *
83906646 ACGACAAATCTG-TCATCTTTGGTCTACT-TTAATGTAA-ACACACG
1 ATGTCAAATCTGCT-ATCTTCGATCTGCTCCCCGTCTAATACAGA-G
* * *
83906690 AATGCCAGATCTGCTATCTTTGATCTGCTCCCCGTCTAATACAGAG
1 -ATGTCAAATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAG
* * * * *
83906736 ACT-CCAAATCTG-TCATCTTCGATCTACT--TCGATGTAA-ACAAACG
1 A-TGTCAAATCTGCT-ATCTTCGATCTGCTCCCCG-TCTAATACAGA-G
* * * *
83906780 AATGTCAGATCTGCTATCTTCGGTCTGCTCCCTGTCTAATATAGAG
1 -ATGTCAAATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAG
* * * * * * *
83906826 ACGCCAAATTTG-TCATCTTTGATCTGCT--TCGATGTAA-ACACATG
1 ATGTCAAATCTGCT-ATCTTCGATCTGCTCCCCG-TCTAATACAGA-G
*
83906870 AATGTCAGATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAG
1 -ATGTCAAATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAG
* * * * * * *
83906916 ACGCCAAATCT-ATCATCTTTGATCTGCT--TCGATGTAA-ACACATG
1 ATGTCAAATCTGCT-ATCTTCGATCTGCTCCCCG-TCTAATACAGA-G
* *
83906960 AATGTCAGATCTACTATCTTCGATCTGCTCCCCGTCTAATACAGAG
1 -ATGTCAAATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAG
* * * * * *
83907006 ACGCCAAAT-TTC-ATCTTCGATCTGCT--TCGATGTAA-ACACACG
1 ATGTCAAATCTGCTATCTTCGATCTGCTCCCCG-TCTAATACAGA-G
* *
83907048 AATGTTAGATCTGCTATCTTCGATCTGCTCCCCGTCTAATAC--AG
1 -ATGTCAAATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAG
* * * ** * *
83907092 ACGCCAAATCTG-TCATCTTTGATCTGCT--TTGATGTAA-ACACATG
1 ATGTCAAATCTGCT-ATCTTCGATCTGCTCCCCG-TCTAATACAGA-G
* *
83907136 AATGTCAGATCTGCTATCTTCGATCTGCTCCCCGTCTAATATAGAG
1 -ATGTCAAATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAG
83907182 ATGTCAAATCTGCTATC
1 ATGTCAAATCTGCTATC
83907199 GGTGATCTAC
Statistics
Matches: 469, Mismatches: 118, Indels: 112
0.67 0.17 0.16
Matches are distributed among these distances:
41 9 0.02
42 10 0.02
43 63 0.13
44 35 0.07
45 285 0.61
46 38 0.08
47 29 0.06
ACGTcount: A:0.27, C:0.26, G:0.15, T:0.32
Consensus pattern (45 bp):
ATGTCAAATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAG
Found at i:83906642 original size:90 final size:90
Alignment explanation
Indices: 83906510--83907193 Score: 1043
Period size: 90 Copynumber: 7.6 Consensus size: 90
83906500 GTAACTCAGC
* * *
83906510 AATGTCAAATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGACAAATCTGTCATCTT
1 AATGTCAGATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTT
* *
83906575 CGATCTGCTTCGATGTAAACACATA
66 TGATCTGCTTCGATGTAAACACATG
* * *
83906600 AATGTCAGATCTGCTATCTTCGATCTGCTCCCAGTCTAATACAAAGACGACAAATCTGTCATCTT
1 AATGTCAGATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTT
* * ** *
83906665 TGGTCTACTTTAATGTAAACACACG
66 TGATCTGCTTCGATGTAAACACATG
* * *
83906690 AATGCCAGATCTGCTATCTTTGATCTGCTCCCCGTCTAATACAGAGACTCCAAATCTGTCATCTT
1 AATGTCAGATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTT
* * * *
83906755 CGATCTACTTCGATGTAAACAAACG
66 TGATCTGCTTCGATGTAAACACATG
* * * *
83906780 AATGTCAGATCTGCTATCTTCGGTCTGCTCCCTGTCTAATATAGAGACGCCAAATTTGTCATCTT
1 AATGTCAGATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTT
83906845 TGATCTGCTTCGATGTAAACACATG
66 TGATCTGCTTCGATGTAAACACATG
*
83906870 AATGTCAGATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTATCATCTT
1 AATGTCAGATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTT
83906935 TGATCTGCTTCGATGTAAACACATG
66 TGATCTGCTTCGATGTAAACACATG
*
83906960 AATGTCAGATCTACTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAAT-T-TCATCTT
1 AATGTCAGATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTT
* *
83907023 CGATCTGCTTCGATGTAAACACACG
66 TGATCTGCTTCGATGTAAACACATG
*
83907048 AATGTTAGATCTGCTATCTTCGATCTGCTCCCCGTCTAATAC--AGACGCCAAATCTGTCATCTT
1 AATGTCAGATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTT
*
83907111 TGATCTGCTTTGATGTAAACACATG
66 TGATCTGCTTCGATGTAAACACATG
* * *
83907136 AATGTCAGATCTGCTATCTTCGATCTGCTCCCCGTCTAATATAGAGATGTCAAATCTG
1 AATGTCAGATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTG
83907194 CTATCGGTGA
Statistics
Matches: 540, Mismatches: 50, Indels: 8
0.90 0.08 0.01
Matches are distributed among these distances:
86 11 0.02
87 1 0.00
88 139 0.26
89 1 0.00
90 388 0.72
ACGTcount: A:0.27, C:0.26, G:0.15, T:0.32
Consensus pattern (90 bp):
AATGTCAGATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTT
TGATCTGCTTCGATGTAAACACATG
Found at i:83917808 original size:14 final size:14
Alignment explanation
Indices: 83917785--83917814 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
83917775 TTGAAAATAT
83917785 GTTGAATTGGATTG
1 GTTGAATTGGATTG
*
83917799 GTTGATTTGGATTG
1 GTTGAATTGGATTG
83917813 GT
1 GT
83917815 CTCGATATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.17, C:0.00, G:0.37, T:0.47
Consensus pattern (14 bp):
GTTGAATTGGATTG
Found at i:83925548 original size:23 final size:23
Alignment explanation
Indices: 83925522--83925566 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
83925512 TGGGTATGTG
* * *
83925522 ATGACGTTATTTTATAAATATGC
1 ATGAAGTTATCTTAAAAATATGC
*
83925545 ATGAATTTATCTTAAAAATATG
1 ATGAAGTTATCTTAAAAATATG
83925567 TTGAATTGGA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.40, C:0.07, G:0.11, T:0.42
Consensus pattern (23 bp):
ATGAAGTTATCTTAAAAATATGC
Found at i:83925589 original size:14 final size:14
Alignment explanation
Indices: 83925566--83925595 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
83925556 TTAAAAATAT
83925566 GTTGAATTGGATTG
1 GTTGAATTGGATTG
*
83925580 GTTGATTTGGATTG
1 GTTGAATTGGATTG
83925594 GT
1 GT
83925596 CTCGATATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.17, C:0.00, G:0.37, T:0.47
Consensus pattern (14 bp):
GTTGAATTGGATTG
Found at i:83929618 original size:119 final size:112
Alignment explanation
Indices: 83929393--83929606 Score: 284
Period size: 119 Copynumber: 1.8 Consensus size: 112
83929383 AAACTTCATG
* * * *
83929393 ATACATACTTTAACATTTCATGCAAATATAATATAGAAAATGATAAATAACGACATAAATTACAT
1 ATACATACATTAACATTTCATGCAAATACAATATAGAAAATAATAAATAACAACATAAATTACAT
* * *
83929458 AATATACATTAACATTTCATGTAGATATAATCATAAATAACATAAAT
66 AATATACAATAACATTTCATGCAAATATAATCATAAATAACATAAAT
*
83929505 ATACATACATTAACATTTCATGCGAAATACAATATAGAAAATAATGAATATAACAATATAAATTA
1 ATACATACATTAACATTTCATGC-AAATACAATATAGAAAATAAT-AA-ATAACAACATAAATTA
*
83929570 CATAATATATATACAATAATATTTCATGCAAATATAA
63 C---ATA-ATATACAATAACATTTCATGCAAATATAA
83929607 CTTAGAATAA
Statistics
Matches: 86, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
112 22 0.26
113 19 0.22
114 2 0.02
115 15 0.17
118 3 0.03
119 25 0.29
ACGTcount: A:0.52, C:0.11, G:0.05, T:0.32
Consensus pattern (112 bp):
ATACATACATTAACATTTCATGCAAATACAATATAGAAAATAATAAATAACAACATAAATTACAT
AATATACAATAACATTTCATGCAAATATAATCATAAATAACATAAAT
Found at i:83929627 original size:71 final size:73
Alignment explanation
Indices: 83929490--83929633 Score: 163
Period size: 71 Copynumber: 2.0 Consensus size: 73
83929480 AGATATAATC
* * *
83929490 ATAAATAACATAAATATACATACATTAACATTTCATGCGAAATACAATATAGAAAATAATGAATA
1 ATAAATAACATAAATATACATACAATAACATTTCATGCGAAATACAATATAGAAAACAATCAATA
83929555 TAA-CAAT
66 TAATCAAT
* * * *
83929562 ATAAATTACAT-AATATATATACAATAATATTTCATGC-AAATATAACT-TAGAATAACAA-CAT
1 ATAAATAACATAAATATACATACAATAACATTTCATGCGAAATACAA-TATAGAA-AACAATCA-
83929623 ATATAATCAAT
63 ATATAATCAAT
83929634 TTTCATGCAA
Statistics
Matches: 61, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
70 13 0.21
71 34 0.56
72 14 0.23
ACGTcount: A:0.54, C:0.11, G:0.04, T:0.31
Consensus pattern (73 bp):
ATAAATAACATAAATATACATACAATAACATTTCATGCGAAATACAATATAGAAAACAATCAATA
TAATCAAT
Found at i:83930072 original size:12 final size:12
Alignment explanation
Indices: 83930055--83930126 Score: 64
Period size: 12 Copynumber: 6.2 Consensus size: 12
83930045 AAAATTATAC
83930055 ATAATATAATAA
1 ATAATATAATAA
*
83930067 ATAATAT-A-CA
1 ATAATATAATAA
*
83930077 ATAAAAT-ATAA
1 ATAATATAATAA
83930088 ATAATATAATAA
1 ATAATATAATAA
83930100 ATAATACATAA-AA
1 ATAAT--ATAATAA
*
83930113 A-AATAAAATAA
1 ATAATATAATAA
83930124 ATA
1 ATA
83930127 TTTTTTTACA
Statistics
Matches: 49, Mismatches: 5, Indels: 12
0.74 0.08 0.18
Matches are distributed among these distances:
10 11 0.22
11 11 0.22
12 20 0.41
13 3 0.06
14 4 0.08
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (12 bp):
ATAATATAATAA
Found at i:83930097 original size:33 final size:33
Alignment explanation
Indices: 83930044--83930123 Score: 108
Period size: 33 Copynumber: 2.4 Consensus size: 33
83930034 TTACAAATTT
* *
83930044 TAAAATTATACATAATATAATAAATAATATACAA
1 TAAAA-TATAAATAATATAATAAATAATACACAA
*
83930078 TAAAATATAAATAATATAATAAATAATACATAA
1 TAAAATATAAATAATATAATAAATAATACACAA
*
83930111 AAAAATA-AAATAA
1 TAAAATATAAATAA
83930124 ATATTTTTTT
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
32 6 0.14
33 31 0.74
34 5 0.12
ACGTcount: A:0.68, C:0.04, G:0.00, T:0.29
Consensus pattern (33 bp):
TAAAATATAAATAATATAATAAATAATACACAA
Found at i:83930110 original size:19 final size:19
Alignment explanation
Indices: 83930046--83930110 Score: 61
Period size: 19 Copynumber: 3.7 Consensus size: 19
83930036 ACAAATTTTA
*
83930046 AAATTATACATAATATAAT
1 AAATAATACATAATATAAT
83930065 AAATAAT--ATACA-AT-A-
1 AAATAATACATA-ATATAAT
*
83930080 AAAT-ATAAATAATATAAT
1 AAATAATACATAATATAAT
83930098 AAATAATACATAA
1 AAATAATACATAA
83930111 AAAAATAAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 14
0.70 0.04 0.26
Matches are distributed among these distances:
14 2 0.05
15 5 0.14
16 6 0.16
17 6 0.16
18 5 0.14
19 13 0.35
ACGTcount: A:0.65, C:0.05, G:0.00, T:0.31
Consensus pattern (19 bp):
AAATAATACATAATATAAT
Found at i:83930205 original size:2 final size:2
Alignment explanation
Indices: 83930194--83930228 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
83930184 ATAAATAAAT
83930194 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
83930229 AAAGAAGGAT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:83933174 original size:19 final size:19
Alignment explanation
Indices: 83933152--83933188 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
83933142 GACTTTATCA
83933152 ATACAAGTCCACTTCTACT
1 ATACAAGTCCACTTCTACT
* *
83933171 ATACAGGTCTACTTCTAC
1 ATACAAGTCCACTTCTAC
83933189 CCATACATCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (19 bp):
ATACAAGTCCACTTCTACT
Found at i:83933615 original size:28 final size:29
Alignment explanation
Indices: 83933572--83933627 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 29
83933562 GATTGTAAAA
83933572 GGTTTCTAGTTGAGCCACAAAAACTAGAT
1 GGTTTCTAGTTGAGCCACAAAAACTAGAT
* *
83933601 GGTTT-TAGTTTAGCCATAAAAACTAGA
1 GGTTTCTAGTTGAGCCACAAAAACTAGA
83933628 GGAGAAGTTC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 20 0.80
29 5 0.20
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.30
Consensus pattern (29 bp):
GGTTTCTAGTTGAGCCACAAAAACTAGAT
Found at i:83942105 original size:26 final size:26
Alignment explanation
Indices: 83942069--83942152 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
83942059 CATGAAATTC
83942069 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
83942095 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
83942121 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
83942147 TTATCA
1 TTATCA
83942153 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:83942509 original size:3 final size:3
Alignment explanation
Indices: 83942503--83942588 Score: 106
Period size: 3 Copynumber: 29.3 Consensus size: 3
83942493 TTCTAAGATT
* ** *
83942503 TTA TTA TTA TTA TTAA TTA TTA GTA TGG TT- TTA -TA TTA -AA TTA
1 TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
83942546 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
83942589 GGTTTCATAT
Statistics
Matches: 72, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
2 5 0.07
3 64 0.89
4 3 0.04
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:83942854 original size:23 final size:23
Alignment explanation
Indices: 83942828--83942883 Score: 71
Period size: 23 Copynumber: 2.4 Consensus size: 23
83942818 ACAATGACAA
*
83942828 TTGTAATAAA-A-ATATTGGTACAT
1 TTGTAATAAATAGATA-T-GTACAC
83942851 TTGTAATAAATAGATATGTACAC
1 TTGTAATAAATAGATATGTACAC
83942874 TTGTAATAAA
1 TTGTAATAAA
83942884 GTAACTAATT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
23 25 0.83
24 2 0.07
25 3 0.10
ACGTcount: A:0.45, C:0.05, G:0.12, T:0.38
Consensus pattern (23 bp):
TTGTAATAAATAGATATGTACAC
Found at i:83943616 original size:23 final size:23
Alignment explanation
Indices: 83943601--83943677 Score: 81
Period size: 21 Copynumber: 3.5 Consensus size: 23
83943591 CAGACACTTT
83943601 ATGTGTCGTATTTCAGGCACCTC
1 ATGTGTCGTATTTCAGGCACCTC
*
83943624 GTGTGTCGTA--TCAGGCACCTC
1 ATGTGTCGTATTTCAGGCACCTC
* * * *
83943645 GTGTGTC--ATTTTAGGCACTTT
1 ATGTGTCGTATTTCAGGCACCTC
83943666 ATGTGTCGTATT
1 ATGTGTCGTATT
83943678 CTGATCAGGT
Statistics
Matches: 45, Mismatches: 5, Indels: 8
0.78 0.09 0.14
Matches are distributed among these distances:
19 1 0.02
21 32 0.71
23 12 0.27
ACGTcount: A:0.16, C:0.21, G:0.25, T:0.39
Consensus pattern (23 bp):
ATGTGTCGTATTTCAGGCACCTC
Found at i:83946447 original size:14 final size:14
Alignment explanation
Indices: 83946428--83946454 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
83946418 TAGGTCATGT
83946428 ATGTAACACCCCTA
1 ATGTAACACCCCTA
83946442 ATGTAACACCCCT
1 ATGTAACACCCCT
83946455 TACCCATGTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.37, G:0.07, T:0.22
Consensus pattern (14 bp):
ATGTAACACCCCTA
Found at i:83948713 original size:48 final size:48
Alignment explanation
Indices: 83948559--83948865 Score: 222
Period size: 46 Copynumber: 6.5 Consensus size: 48
83948549 AGATGCCGAC
* **
83948559 GCCATGTCTCAGACACGGTCTTACACTGGCTAACA-CATCAAAGTCGAT
1 GCCATGTCCCAGACA-GGTCTTACACTGGCTCTCATCATCAAAGTCGAT
* * * * * * *
83948607 GTCATGTCCTAGACAGGTCTTACACTGACTTTCATATATCGAGGTCGAT
1 GCCATGTCCCAGACAGGTCTTACACTGGCTCTCAT-CATCAAAGTCGAT
* * *
83948656 GCCGTGTCCCAGACAGGTCTTATACTGGCTCTCATCTATC-ATGTCGAT
1 GCCATGTCCCAGACAGGTCTTACACTGGCTCTCATC-ATCAAAGTCGAT
* * * * *
83948704 ACCATGTCCCAGATAGGTCTTACACT-G-ACACA-CAAC-AAG-CTGAT
1 GCCATGTCCCAGACAGGTCTTACACTGGCTCTCATCATCAAAGTC-GAT
* * * * *
83948748 GCCATGTCCCAGACAGGTCTTAAACTAGCTCTCGTC-TCAATGCCGAT
1 GCCATGTCCCAGACAGGTCTTACACTGGCTCTCATCATCAAAGTCGAT
* * * *** *
83948795 G-CATGTCTCAGACATGTCTTACACTGGCTCTCATAAT-GTGGCCGAT
1 GCCATGTCCCAGACAGGTCTTACACTGGCTCTCATCATCAAAGTCGAT
*
83948841 G-CATGTCCCAGACATGTCTTACACT
1 GCCATGTCCCAGACAGGTCTTACACT
83948866 AGCACACATA
Statistics
Matches: 206, Mismatches: 43, Indels: 22
0.76 0.16 0.08
Matches are distributed among these distances:
43 1 0.00
44 30 0.15
45 2 0.01
46 64 0.31
47 25 0.12
48 42 0.20
49 42 0.20
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.27
Consensus pattern (48 bp):
GCCATGTCCCAGACAGGTCTTACACTGGCTCTCATCATCAAAGTCGAT
Found at i:83950240 original size:3 final size:3
Alignment explanation
Indices: 83950232--83950267 Score: 63
Period size: 3 Copynumber: 12.0 Consensus size: 3
83950222 CAAATATATA
*
83950232 AAT AAT AAT AAT AAT AGT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
83950268 GGTAAAATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:83950541 original size:8 final size:8
Alignment explanation
Indices: 83950530--83950568 Score: 55
Period size: 8 Copynumber: 5.1 Consensus size: 8
83950520 AGGAAATACA
83950530 ATAATAAT
1 ATAATAAT
83950538 ATAA-AAT
1 ATAATAAT
*
83950545 -TAATGAT
1 ATAATAAT
83950552 ATAATAAT
1 ATAATAAT
83950560 ATAATAAT
1 ATAATAAT
83950568 A
1 A
83950569 ATAAGCATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
6 3 0.11
7 5 0.19
8 19 0.70
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.36
Consensus pattern (8 bp):
ATAATAAT
Found at i:83952262 original size:44 final size:44
Alignment explanation
Indices: 83951983--83952312 Score: 136
Period size: 44 Copynumber: 7.4 Consensus size: 44
83951973 AAGTAGTCCC
* * * *
83951983 ACTGCAACTTC-AGGAAGATGAGACTTGTAGCTTCGATTTACTCC
1 ACTGCAACTTCAAGG-AGAAGAGATTTGTAGCTTCGATCTACTCT
* ** **
83952027 AGTATAGTTTCAAGGAGAAGAGATTTGTAGCTTCGATCTACTCT
1 ACTGCAACTTCAAGGAGAAGAGATTTGTAGCTTCGATCTACTCT
* * * * ** * * *
83952071 GCTGGAACTTAAAGGAGATA-AGAATTGGTAATTTCAACCTACTCC
1 ACTGCAACTTCAAGGAGA-AGAG-ATTTGTAGCTTCGATCTACTCT
* * ** *
83952116 ACTGCAACTTTAGGGAGATATG-G-TTTGTCTAG-TTTTATCCTGCTCT
1 ACTGCAACTTCAAGGAGA-A-GAGATTTG--TAGCTTCGAT-CTACTCT
* * * *
83952162 ACTGCAACTTTATAGAGATAAG-GA-TTGTGGCTTCGATCTGCTCT
1 ACTGCAACTTCA-AG-GAGAAGAGATTTGTAGCTTCGATCTACTCT
* * * *
83952206 AATGTAATTTCAAGGAGAAGAGATTTGTAGCTTCGATCTACTCC
1 ACTGCAACTTCAAGGAGAAGAGATTTGTAGCTTCGATCTACTCT
* * * ** * * *
83952250 GCTGGAACTTCAAGGAGGTAAGA-ATTGGTAATTTCAACCTGCTCT
1 ACTGCAACTTCAAGGA-G-AAGAGATTTGTAGCTTCGATCTACTCT
*
83952295 ACTGCAACTTCAGGGAGA
1 ACTGCAACTTCAAGGAGA
83952313 TAAGGCTGAT
Statistics
Matches: 210, Mismatches: 60, Indels: 33
0.69 0.20 0.11
Matches are distributed among these distances:
42 5 0.02
43 5 0.02
44 94 0.45
45 72 0.34
46 29 0.14
47 2 0.01
48 3 0.01
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32
Consensus pattern (44 bp):
ACTGCAACTTCAAGGAGAAGAGATTTGTAGCTTCGATCTACTCT
Found at i:83952472 original size:143 final size:143
Alignment explanation
Indices: 83952296--83952941 Score: 909
Period size: 143 Copynumber: 4.5 Consensus size: 143
83952286 ACCTGCTCTA
* *
83952296 CTGCAACTTCAGGGAGATAAGGCTGATGGCTTCAATTTGCTTCACTGCAACTTCAGGAAGATAAG
1 CTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTTCACTGCAACTTCAGGAAGATAAG
* * *
83952361 ATCCGCCATAATTTGTAGCTTCAATCTATTCCATTGCAACTCCAGGGAAATAATATTCGCTTTTT
66 ATCCGCCATAATTTGTAGCTTCAATCTATTCCACTGCAACTCCAGGGAAATAAGATTCGCTTTCT
*
83952426 TTAGTCTGCTCCG
131 TCAGTCTGCTCCG
* * *
83952439 CTGCAGCTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTTCACTGCAACTTTAGAAAGATAAG
1 CTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTTCACTGCAACTTCAGGAAGATAAG
* * * * * *
83952504 ATTCGCCATAATTAGTAGCTTTAATCTGTTCCACTGCAACTGCAGGGAAATAAGATTTGCTTTCT
66 ATCCGCCATAATTTGTAGCTTCAATCTATTCCACTGCAACTCCAGGGAAATAAGATTCGCTTTCT
*
83952569 TCAATCTGCTCCG
131 TCAGTCTGCTCCG
* * * *
83952582 CTGCAACTTCAGGGAGATAAGGTTGGTGGCTTCAATTTGCTCCGCTGCAACTTCAGGAAGATAAG
1 CTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTTCACTGCAACTTCAGGAAGATAAG
* * * *
83952647 ATTCGCCATAATTTGTAGCTTCAATC-AGTTCCACTACAACTCTAGGGAAATAAGATTTGCTTTC
66 ATCCGCCATAATTTGTAGCTTCAATCTA-TTCCACTGCAACTCCAGGGAAATAAGATTCGCTTTC
*
83952711 TTCAGTCTGCTTCG
130 TTCAGTCTGCTCCG
* * *
83952725 CTGCAACTTCAGGGAGATAAGGCTGGTGGGTTCAATCTGCTCCACTGCAATTTCAGGAAGATAAG
1 CTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTTCACTGCAACTTCAGGAAGATAAG
** * * *
83952790 ATCCGCCATAATTCATAGCTTCAATCTGTTCCACTGCAACTCTAGGGAAATAAGATTCACTTTCT
66 ATCCGCCATAATTTGTAGCTTCAATCTATTCCACTGCAACTCCAGGGAAATAAGATTCGCTTTCT
*
83952855 TCAGTCTGCTCTG
131 TCAGTCTGCTCCG
* * * * *
83952868 CTGCAACTTTAGGAAGATAAGACTGGTGGCTTCAATCTAC-TCTACTGCAACTTTAGGAAGATAA
1 CTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTTC-ACTGCAACTTCAGGAAGATAA
83952932 GATCCGCCAT
65 GATCCGCCAT
83952942 CTTCGATCTA
Statistics
Matches: 447, Mismatches: 53, Indels: 6
0.88 0.10 0.01
Matches are distributed among these distances:
142 1 0.00
143 446 1.00
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.30
Consensus pattern (143 bp):
CTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTTCACTGCAACTTCAGGAAGATAAG
ATCCGCCATAATTTGTAGCTTCAATCTATTCCACTGCAACTCCAGGGAAATAAGATTCGCTTTCT
TCAGTCTGCTCCG
Found at i:83952479 original size:44 final size:45
Alignment explanation
Indices: 83952430--83952790 Score: 172
Period size: 44 Copynumber: 7.7 Consensus size: 45
83952420 CTTTTTTTAG
*
83952430 TCTGCTCCGCTGCAGCTTCAGGGAGATAAG-GCTGGTGGCTTCAA
1 TCTGCTCCGCTGCAACTTCAGGGAGATAAGAGCTGGTGGCTTCAA
* * * ** * * *
83952474 TCTGCTTCACTGCAACTTTAGAAAGATAAGATTCGCCATAATTAGTAGCTTTAA
1 TCTGCTCCGCTGCAACTTCAGGGAGATAAGA---G-C-----TGGTGGCTTCAA
* * * * ** * **
83952528 TCTGTTCCACTGCAACTGCAGGGAAATAAGATTTGCTTTCTTCAA
1 TCTGCTCCGCTGCAACTTCAGGGAGATAAGAGCTGGTGGCTTCAA
*
83952573 TCTGCTCCGCTGCAACTTCAGGGAGATAAG-GTTGGTGGCTTCAA
1 TCTGCTCCGCTGCAACTTCAGGGAGATAAGAGCTGGTGGCTTCAA
* * * *
83952617 TTTGCTCCGCTGCAACTTCAGGAAGATAAGATTCGCCATAATTTGTAGCTTCAA
1 TCTGCTCCGCTGCAACTTCAGGGAGATAAGA---G-C-----TGGTGGCTTCAA
* * * * * ** * ** *
83952671 TCAGTTCCACTACAAC-TCTAGGGAAATAAGATTTGCTTTCTTCAG
1 TCTGCTCCGCTGCAACTTC-AGGGAGATAAGAGCTGGTGGCTTCAA
* *
83952716 TCTGCTTCGCTGCAACTTCAGGGAGATAAG-GCTGGTGGGTTCAA
1 TCTGCTCCGCTGCAACTTCAGGGAGATAAGAGCTGGTGGCTTCAA
* * *
83952760 TCTGCTCCACTGCAATTTCAGGAAGATAAGA
1 TCTGCTCCGCTGCAACTTCAGGGAGATAAGA
83952791 TCCGCCATAA
Statistics
Matches: 227, Mismatches: 67, Indels: 45
0.67 0.20 0.13
Matches are distributed among these distances:
44 95 0.42
45 61 0.27
46 2 0.01
48 2 0.01
49 1 0.00
53 2 0.01
54 64 0.28
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (45 bp):
TCTGCTCCGCTGCAACTTCAGGGAGATAAGAGCTGGTGGCTTCAA
Found at i:83952586 original size:45 final size:45
Alignment explanation
Indices: 83952526--83952745 Score: 167
Period size: 45 Copynumber: 4.7 Consensus size: 45
83952516 TAGTAGCTTT
* * *
83952526 AATCTGTTCCACTGCAACTGCAGGGAAATAAGATTTGCTTTCTTC
1 AATCTGCTCCGCTGCAACTTCAGGGAAATAAGATTTGCTTTCTTC
* * * **
83952571 AATCTGCTCCGCTGCAACTTCAGGGAGATAAG-GTTGGTGGCTTC
1 AATCTGCTCCGCTGCAACTTCAGGGAAATAAGATTTGCTTTCTTC
* *
83952615 AATTTGCTCCGCTGCAACTTCA-GGAAGATAAGATTCGCCATAATTTGTAGCTTC
1 AATCTGCTCCGCTGCAACTTCAGGGAA-ATAAGATTTG-C-----TT-T--CTTC
* * * *
83952669 AATCAGTTCCACTACAAC-TCTAGGGAAATAAGATTTGCTTTCTTC
1 AATCTGCTCCGCTGCAACTTC-AGGGAAATAAGATTTGCTTTCTTC
* * *
83952714 AGTCTGCTTCGCTGCAACTTCAGGGAGATAAG
1 AATCTGCTCCGCTGCAACTTCAGGGAAATAAG
83952746 GCTGGTGGGT
Statistics
Matches: 133, Mismatches: 28, Indels: 28
0.70 0.15 0.15
Matches are distributed among these distances:
43 3 0.02
44 34 0.26
45 56 0.42
46 2 0.02
47 1 0.01
48 2 0.02
51 1 0.01
53 3 0.02
54 27 0.20
55 4 0.03
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.30
Consensus pattern (45 bp):
AATCTGCTCCGCTGCAACTTCAGGGAAATAAGATTTGCTTTCTTC
Found at i:83953443 original size:46 final size:46
Alignment explanation
Indices: 83953371--83953563 Score: 248
Period size: 46 Copynumber: 4.2 Consensus size: 46
83953361 AAATTTGGTT
* * *
83953371 TCTTCCATCTATCCCACTGCAACTCAA-GGGTATAGGATTTGTATCA
1 TCTTCAATCCATCCTACTGCAACT-AAGGGGTATAGGATTTGTATCA
* * *
83953417 TCTACAATCCATCCTATTACAACTCAA-GGGTAT-GAGATTTGTATCA
1 TCTTCAATCCATCCTACTGCAACT-AAGGGGTATAG-GATTTGTATCA
*
83953463 TCTTCAATCCATCCTACTGCAACTAAGGGGTATAGGATTTGTATCT
1 TCTTCAATCCATCCTACTGCAACTAAGGGGTATAGGATTTGTATCA
* * *
83953509 TCTTCAATCTATCCTACTGCAACTAAGGGGTATAGGATTTGTAACT
1 TCTTCAATCCATCCTACTGCAACTAAGGGGTATAGGATTTGTATCA
83953555 TCTTCAATC
1 TCTTCAATC
83953564 AATTTGATCT
Statistics
Matches: 132, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
45 3 0.02
46 128 0.97
47 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.15, T:0.34
Consensus pattern (46 bp):
TCTTCAATCCATCCTACTGCAACTAAGGGGTATAGGATTTGTATCA
Found at i:83954027 original size:27 final size:26
Alignment explanation
Indices: 83953991--83954080 Score: 76
Period size: 27 Copynumber: 3.4 Consensus size: 26
83953981 GCATAGCTCG
83953991 AAATGAATAAATTAATCAAAGATAGC
1 AAATGAATAAATTAATCAAAGATAGC
** * * *
83954017 AAATGCAATAAA--AAGGAAATAAACTC
1 AAATG-AATAAATTAATCAAAGATA-GC
*
83954043 GAAATGAATAAGTTAATCAAAGATAGC
1 -AAATGAATAAATTAATCAAAGATAGC
83954070 AAATGTAATAA
1 AAATG-AATAA
83954081 GAAGGAAATT
Statistics
Matches: 47, Mismatches: 11, Indels: 11
0.68 0.16 0.16
Matches are distributed among these distances:
25 7 0.15
26 16 0.34
27 17 0.36
28 7 0.15
ACGTcount: A:0.58, C:0.08, G:0.13, T:0.21
Consensus pattern (26 bp):
AAATGAATAAATTAATCAAAGATAGC
Found at i:83954067 original size:53 final size:53
Alignment explanation
Indices: 83953987--83954089 Score: 179
Period size: 53 Copynumber: 1.9 Consensus size: 53
83953977 GGGAGCATAG
83953987 CTCGAAATGAATAAATTAATCAAAGATAGCAAATGCAATAAAAAGGAAATAAA
1 CTCGAAATGAATAAATTAATCAAAGATAGCAAATGCAATAAAAAGGAAATAAA
* * *
83954040 CTCGAAATGAATAAGTTAATCAAAGATAGCAAATGTAATAAGAAGGAAAT
1 CTCGAAATGAATAAATTAATCAAAGATAGCAAATGCAATAAAAAGGAAAT
83954090 TGATTGGGAG
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
53 47 1.00
ACGTcount: A:0.55, C:0.09, G:0.16, T:0.20
Consensus pattern (53 bp):
CTCGAAATGAATAAATTAATCAAAGATAGCAAATGCAATAAAAAGGAAATAAA
Found at i:83957516 original size:46 final size:46
Alignment explanation
Indices: 83957469--83957834 Score: 522
Period size: 46 Copynumber: 8.0 Consensus size: 46
83957459 GCTCTCTGAT
* * *
83957469 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * *
83957515 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
83957561 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
83957607 A-GAAACTGAGTAAGACCATGGTTGAAAGATACCATGGCAGCGTGAC
1 ATGAAA-TGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
83957653 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
83957699 A-GAATATGAGTAAGACCATGGTTGAAAGATACCATGGCAGCGTGAC
1 ATGAA-ATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
83957745 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * *
83957791 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATG
83957835 TCAAAGATAA
Statistics
Matches: 296, Mismatches: 19, Indels: 10
0.91 0.06 0.03
Matches are distributed among these distances:
45 8 0.03
46 281 0.95
47 7 0.02
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.21
Consensus pattern (46 bp):
ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:83958995 original size:21 final size:21
Alignment explanation
Indices: 83958963--83959004 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
83958953 TTTTTTATTA
*
83958963 TTTGTGTTTTTTGTTTGTTTG
1 TTTGTGTTTTTTGTTTATTTG
*
83958984 TTTGT-TTATTTTTTTTATTTG
1 TTTGTGTT-TTTTGTTTATTTG
83959005 GTTGCCTCCG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
20 2 0.11
21 16 0.89
ACGTcount: A:0.05, C:0.00, G:0.17, T:0.79
Consensus pattern (21 bp):
TTTGTGTTTTTTGTTTATTTG
Found at i:83959954 original size:3 final size:3
Alignment explanation
Indices: 83959946--83960190 Score: 180
Period size: 3 Copynumber: 80.7 Consensus size: 3
83959936 TAATTTTAAC
* * * *
83959946 ATT ATT ATT ATCT -TT ATT TTT ATT ACT ATT ATT ATT ACT ACT ATT
1 ATT ATT ATT AT-T ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * *
83959991 TTT ATT TTT ATT ACT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* *
83960039 ATT -TT CATT ACT ATT A-T ATT ATT -TCT -TT TTT ATTT ATTT ATTT
1 ATT ATT -ATT ATT ATT ATT ATT ATT AT-T ATT ATT A-TT A-TT A-TT
* * * * * * * *
83960082 ACCT ATT ACTT TTT A-T ATT CACTC ATT -TT ATT TTT TTT ATC ATG ACT
1 A-TT ATT A-TT ATT ATT ATT -A-TT ATT ATT ATT ATT ATT ATT ATT ATT
* *
83960129 CTC ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
83960177 ATT ATT ATT ATT AT
1 ATT ATT ATT ATT AT
83960191 ATCCTTTTAT
Statistics
Matches: 196, Mismatches: 33, Indels: 26
0.77 0.13 0.10
Matches are distributed among these distances:
2 11 0.06
3 164 0.84
4 20 0.10
5 1 0.01
ACGTcount: A:0.28, C:0.07, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:83960217 original size:18 final size:18
Alignment explanation
Indices: 83960194--83960228 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
83960184 TTATTATATC
*
83960194 CTTTTATATCATTCCAAA
1 CTTTTATATCATGCCAAA
83960212 CTTTTATATCATGCCAA
1 CTTTTATATCATGCCAA
83960229 CAATTTTCAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.23, G:0.03, T:0.43
Consensus pattern (18 bp):
CTTTTATATCATGCCAAA
Found at i:83962958 original size:43 final size:44
Alignment explanation
Indices: 83962910--83963065 Score: 156
Period size: 43 Copynumber: 3.6 Consensus size: 44
83962900 TACCGAGATG
* *
83962910 TGATTACATGTAAGACCATGTCTGGGGCATTGGCATTGTAT-TA
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATATA
** *
83962953 TGATTATGTGTAAGACCATGTCTGGGACATTAGCATCGT-TATA
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATATA
*** * * * * *
83962996 TGATTTTGTATAAGACCCTGTCTAGGACAATGGCATCG-ATATG
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATATA
* *
83963039 TGATAACATGTAAGACCATATCTGGGA
1 TGATTACATGTAAGACCATGTCTGGGA
83963066 TATGGCGTTG
Statistics
Matches: 91, Mismatches: 20, Indels: 4
0.79 0.17 0.03
Matches are distributed among these distances:
42 1 0.01
43 90 0.99
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.33
Consensus pattern (44 bp):
TGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATATA
Found at i:83963884 original size:19 final size:19
Alignment explanation
Indices: 83963850--83963898 Score: 82
Period size: 19 Copynumber: 2.6 Consensus size: 19
83963840 AAACCAAAAT
*
83963850 AAGCCAATTC-ACATTTAC
1 AAGCCATTTCAACATTTAC
83963868 AAGCCATTTCAACATTTAC
1 AAGCCATTTCAACATTTAC
83963887 AAGCCATTTCAA
1 AAGCCATTTCAA
83963899 ATGGCTAAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
18 9 0.31
19 20 0.69
ACGTcount: A:0.39, C:0.27, G:0.06, T:0.29
Consensus pattern (19 bp):
AAGCCATTTCAACATTTAC
Found at i:83970034 original size:24 final size:24
Alignment explanation
Indices: 83969931--83970041 Score: 79
Period size: 24 Copynumber: 4.6 Consensus size: 24
83969921 TGGCTATCGG
83969931 GAGCTTCCC-ATTAAATGGCTCTTATT
1 GAGCTTCCCGATT--ATGGCTCTTA-T
* * *
83969957 GAGCTTCCTGA-TA-GGCTTTTCCT
1 GAGCTTCCCGATTATGGCTCTT-AT
* * *
83969980 GAGCTTCCTGA-TATGGTTCTTTGT
1 GAGCTTCCCGATTATGGCTC-TTAT
*
83970004 GAACTTCCCGATTATGGCTCTTAT
1 GAGCTTCCCGATTATGGCTCTTAT
83970028 GAGCTTCCCG-TTAT
1 GAGCTTCCCGATTAT
83970042 ATAGCCCGAA
Statistics
Matches: 69, Mismatches: 11, Indels: 13
0.74 0.12 0.14
Matches are distributed among these distances:
23 24 0.35
24 26 0.38
25 9 0.13
26 9 0.13
27 1 0.01
ACGTcount: A:0.17, C:0.23, G:0.20, T:0.40
Consensus pattern (24 bp):
GAGCTTCCCGATTATGGCTCTTAT
Found at i:83979716 original size:19 final size:19
Alignment explanation
Indices: 83979692--83979782 Score: 125
Period size: 19 Copynumber: 4.9 Consensus size: 19
83979682 AATCATATCT
*
83979692 TCTAAGATTGTATATCATA
1 TCTAAGATTGCATATCATA
83979711 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
*
83979729 TCTAATATTG--TATCATA
1 TCTAAGATTGCATATCATA
*
83979746 TCTAAGATTGCATATCACA
1 TCTAAGATTGCATATCATA
*
83979765 TCTAAGATTGCACATCAT
1 TCTAAGATTGCATATCAT
83979783 TGAAGATTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
17 15 0.24
18 15 0.24
19 33 0.52
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:83979750 original size:35 final size:36
Alignment explanation
Indices: 83979692--83979774 Score: 123
Period size: 35 Copynumber: 2.3 Consensus size: 36
83979682 AATCATATCT
*
83979692 TCTAAGATTGTATATCATATCTAAGATTGCA-ATCATA
1 TCTAAGATTG--TATCATATCTAAGATTGCATATCACA
*
83979729 TCTAATATTGTATCATATCTAAGATTGCATATCACA
1 TCTAAGATTGTATCATATCTAAGATTGCATATCACA
83979765 TCTAAGATTG
1 TCTAAGATTG
83979775 CACATCATTG
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
35 19 0.45
36 14 0.33
37 9 0.21
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.39
Consensus pattern (36 bp):
TCTAAGATTGTATCATATCTAAGATTGCATATCACA
Found at i:83980631 original size:207 final size:207
Alignment explanation
Indices: 83980174--83980967 Score: 1347
Period size: 207 Copynumber: 3.8 Consensus size: 207
83980164 AAATCTGCTT
* * * *
83980174 CTTCAATTTGTTCCCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
* * *
83980239 GCGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* * * ** * *
83980304 AGATC-TGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATATGTCTGTCCTCCGTCGAATAT
131 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
83980368 GGAGACGCCAAA
196 GGAGACGCCAAA
*
83980380 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAATGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
* **
83980445 GTGAAAGCCAAATCAGCTATTTCTTCGATTTGTTCCTTGTAAGCACAAAAATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
83980510 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
131 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
83980575 GGAGACGCCAAA
196 GGAGACGCCAAA
83980587 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
* *
83980652 GTGAAAGCCAAATCAGCTATGTCTTTGATTTGTTCCTTGTAAGCACAACGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* * *
83980717 GGATCATGCTTTAGTATAAACATCTTAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
131 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
83980782 GGAGACGCCAAA
196 GGAGACGCCAAA
*
83980794 GTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
*
83980859 GTGAAAACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
*
83980924 GGATCTTGCTTCAGTATAAACATCTGAAGGTCAGATCTGCTATG
131 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATG
83980968 CTTTAACCTG
Statistics
Matches: 553, Mismatches: 34, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
206 123 0.22
207 430 0.78
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (207 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
GGAGACGCCAAA
Found at i:83981152 original size:43 final size:41
Alignment explanation
Indices: 83981099--83981238 Score: 108
Period size: 43 Copynumber: 3.3 Consensus size: 41
83981089 ATCTGTTCCA
*
83981099 CTACTACTTAGGGAGATAAGATCTGCAATTTTAGCCTATTACC
1 CTACTGCTTAGGGAGATAAGATCTGCAA-TTTAGCCT-TTACC
* * * * * *
83981142 CTACTGCTTAGGGGGTTAAGGCAAGTCTTCGATCT-G-CTCTA--
1 CTACTGCTTAGGGAGATAA-G--A-TCTGCAATTTAGCCTTTACC
*
83981183 CTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACC
1 CTACTGCTTAGGGAGATAAGATCTGC-AATTTAGCCT-TTACC
83981226 CTACTGCTTAGGG
1 CTACTGCTTAGGG
83981239 GATTAAGGCG
Statistics
Matches: 73, Mismatches: 14, Indels: 20
0.68 0.13 0.19
Matches are distributed among these distances:
37 4 0.05
38 4 0.05
40 3 0.04
41 19 0.26
43 31 0.42
44 3 0.04
45 1 0.01
46 3 0.04
47 5 0.07
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.31
Consensus pattern (41 bp):
CTACTGCTTAGGGAGATAAGATCTGCAATTTAGCCTTTACC
Found at i:83981206 original size:84 final size:84
Alignment explanation
Indices: 83981062--83981247 Score: 264
Period size: 84 Copynumber: 2.2 Consensus size: 84
83981052 TTTTGACCTG
* * *
83981062 TTAGGGGATTAAGGCGAGTCGTCGTTGATCTGTTCCACTACTACTTAGGGAGATAAGATCTGCAA
1 TTAGGGGATTAAGGCAAGTC-T--TCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGCAA
* *
83981127 TTTTAGCCTATTACCCTACTGC
63 ATTTAACCTATTACCCTACTGC
* * *
83981149 TTAGGGGGTTAAGGCAAGTCTTCGATCTGCTCTACTACTGCTTAGGGAGATAAGATCTGCAAATT
1 TTAGGGGATTAAGGCAAGTCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGCAAATT
*
83981214 TAACCTGTTACCCTACTGC
66 TAACCTATTACCCTACTGC
83981233 TTAGGGGATTAAGGC
1 TTAGGGGATTAAGGC
83981248 GCTGAATTTT
Statistics
Matches: 89, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
84 70 0.79
86 1 0.01
87 18 0.20
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.31
Consensus pattern (84 bp):
TTAGGGGATTAAGGCAAGTCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGCAAATT
TAACCTATTACCCTACTGC
Found at i:83982197 original size:1 final size:1
Alignment explanation
Indices: 83982187--83982252 Score: 51
Period size: 1 Copynumber: 66.0 Consensus size: 1
83982177 GGCCTCTCCA
* * * * * * * * *
83982187 TTTTTCTTTTTTTCTTTTTTTTCTTTTTCTTTTTTCTTTTTTTCTCTTTTTCTTTTCTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
83982252 T
1 T
83982253 GAAATAGAAG
Statistics
Matches: 47, Mismatches: 18, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
1 47 1.00
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (1 bp):
T
Found at i:83982200 original size:8 final size:8
Alignment explanation
Indices: 83982187--83982252 Score: 84
Period size: 8 Copynumber: 8.5 Consensus size: 8
83982177 GGCCTCTCCA
83982187 TTTTTCTT
1 TTTTTCTT
83982195 TTTTTCTT
1 TTTTTCTT
*
83982203 TTTTT-TC
1 TTTTTCTT
83982210 TTTTTC-T
1 TTTTTCTT
83982217 TTTTTCTT
1 TTTTTCTT
*
83982225 TTTTTCTC
1 TTTTTCTT
83982233 TTTTTCTT
1 TTTTTCTT
83982241 TTCTTT-TT
1 TT-TTTCTT
83982249 TTTT
1 TTTT
83982253 GAAATAGAAG
Statistics
Matches: 51, Mismatches: 4, Indels: 7
0.82 0.06 0.11
Matches are distributed among these distances:
7 14 0.27
8 34 0.67
9 3 0.06
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (8 bp):
TTTTTCTT
Found at i:83982213 original size:23 final size:24
Alignment explanation
Indices: 83982188--83982252 Score: 100
Period size: 23 Copynumber: 2.8 Consensus size: 24
83982178 GCCTCTCCAT
83982188 TTTTCTTTTTTTCTTTTTTT-TCT
1 TTTTCTTTTTTTCTTTTTTTCTCT
83982211 TTTTC-TTTTTTCTTTTTTTCTCT
1 TTTTCTTTTTTTCTTTTTTTCTCT
*
83982234 TTTTCTTTTCTT-TTTTTTT
1 TTTTCTTTTTTTCTTTTTTT
83982253 GAAATAGAAG
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
22 14 0.36
23 20 0.51
24 5 0.13
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (24 bp):
TTTTCTTTTTTTCTTTTTTTCTCT
Found at i:83982251 original size:30 final size:30
Alignment explanation
Indices: 83982187--83982249 Score: 103
Period size: 30 Copynumber: 2.2 Consensus size: 30
83982177 GGCCTCTCCA
*
83982187 TTTTTCTTTTTTTCTTTTTTTTCTTTTTCT
1 TTTTTCTTTTTTTCTTCTTTTTCTTTTTCT
83982217 TTTTTCTTTTTTTC-TCTTTTTC-TTTTCT
1 TTTTTCTTTTTTTCTTCTTTTTCTTTTTCT
83982245 TTTTT
1 TTTTT
83982250 TTTGAAATAG
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
28 11 0.34
29 7 0.22
30 14 0.44
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (30 bp):
TTTTTCTTTTTTTCTTCTTTTTCTTTTTCT
Done.