Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 266 of 318
Found at i:84272511 original size:5 final size:5
Alignment explanation
Indices: 84272501--84272532 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
84272491 TTGTGTGTTC
84272501 TTTAT TTTA- TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
84272533 TCACAAAAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:84272515 original size:9 final size:9
Alignment explanation
Indices: 84272501--84272531 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
84272491 TTGTGTGTTC
84272501 TTTATTTTA
1 TTTATTTTA
84272510 TTTATTTTA
1 TTTATTTTA
84272519 TTTTATTTTA
1 -TTTATTTTA
84272529 TTT
1 TTT
84272532 TTCACAAAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (9 bp):
TTTATTTTA
Found at i:84274890 original size:18 final size:18
Alignment explanation
Indices: 84274867--84274902 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
84274857 CCAATTAAAT
84274867 CTTCATGTGTAGTTTTTC
1 CTTCATGTGTAGTTTTTC
84274885 CTTCATGTGTAGTTTTTC
1 CTTCATGTGTAGTTTTTC
84274903 TTACTCCGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.11, C:0.17, G:0.17, T:0.56
Consensus pattern (18 bp):
CTTCATGTGTAGTTTTTC
Found at i:84275694 original size:16 final size:16
Alignment explanation
Indices: 84275663--84275699 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
84275653 ATGTGAATAA
84275663 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
84275679 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
84275695 TATTA
1 TATTA
84275700 AAATAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:84280273 original size:15 final size:15
Alignment explanation
Indices: 84280253--84280283 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
84280243 ACTAAAAAAA
84280253 AAAAAATAGATAGAT
1 AAAAAATAGATAGAT
84280268 AAAAAATAGATAGAT
1 AAAAAATAGATAGAT
84280283 A
1 A
84280284 GATGAGAGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.68, C:0.00, G:0.13, T:0.19
Consensus pattern (15 bp):
AAAAAATAGATAGAT
Found at i:84280273 original size:19 final size:19
Alignment explanation
Indices: 84280249--84280286 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
84280239 AATAACTAAA
84280249 AAAAAAAAAATAGATAGAT
1 AAAAAAAAAATAGATAGAT
* *
84280268 AAAAAATAGATAGATAGAT
1 AAAAAAAAAATAGATAGAT
84280287 GAGAGATAGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.68, C:0.00, G:0.13, T:0.18
Consensus pattern (19 bp):
AAAAAAAAAATAGATAGAT
Found at i:84285262 original size:28 final size:28
Alignment explanation
Indices: 84285201--84285298 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
84285191 TCACAAATTG
** * *
84285201 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
84285230 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
84285258 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
84285286 GCACTAAGTGTGC
1 GCACTAAGTGTGC
84285299 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:84292826 original size:28 final size:28
Alignment explanation
Indices: 84292765--84292862 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
84292755 TCACAAATTG
** * *
84292765 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
84292794 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
84292822 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
84292850 GCACTAAGTGTGC
1 GCACTAAGTGTGC
84292863 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:84299525 original size:71 final size:71
Alignment explanation
Indices: 84299439--84299602 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
84299429 CGATTTGTCT
84299439 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
84299504 CTTTCA
66 CTTTCA
84299510 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
84299575 CTTTCA
66 CTTTCA
84299581 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
84299603 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:84299640 original size:71 final size:70
Alignment explanation
Indices: 84299439--84299636 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
84299429 CGATTTGTCT
* * * *
84299439 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
84299504 CTTTCA
65 CTTTCA
* * * *
84299510 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
84299575 CTTTCA
65 CTTTCA
* *
84299581 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
84299637 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:84303992 original size:12 final size:12
Alignment explanation
Indices: 84303975--84303999 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
84303965 TTTTAAAAAT
84303975 TTAGGATTATTA
1 TTAGGATTATTA
84303987 TTAGGATTATTA
1 TTAGGATTATTA
84303999 T
1 T
84304000 AATATTTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.00, G:0.16, T:0.52
Consensus pattern (12 bp):
TTAGGATTATTA
Found at i:84311256 original size:289 final size:288
Alignment explanation
Indices: 84310717--84311429 Score: 1074
Period size: 289 Copynumber: 2.5 Consensus size: 288
84310707 AAATCTGCTT
* * ** *
84310717 CTTCAATTTATTCTCTAACAATACAGAGATGAGAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
1 CTTCGATTTATTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACAC
* *
84310782 GCGAAAGCCAAATCAGCTATGTTTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTT
66 GTGAAAGCCAAATCAGCTATGGTTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTT
84310847 GGATCTATTTGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACA
131 GGATCTATTTGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACA
* *
84310912 AGAAGGCCAAATCATCTTGGATCTACTTCAGTATAAACATATGAAGGTTAGATCTGCTATGTGTC
196 AGAAGGCCAAATCATCTTGGATCTACTTCAGTATAAACATATGAAGGTGAGATCTGCTATGTATC
84310977 TGC-CCTCCATCGAATATGGAGACGCCAAA
261 TGCTCC-CCATCGAA-ATGGAGACGCCAAA
*
84311006 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTT-CTTCTA-CGTAAAC
1 CTTCGATTTATTCTCTGACAATACAGAGATGCCAAATCATCTTAGA-TTTGCTTC-AGCGTAAAC
* * *
84311069 ACGTGAAAGCCAAATCAACTATGGTTTCGATTTGTTCCTTGTAAACACAAGGATACCAAATCATC
64 ACGTGAAAGCCAAATCAGCTATGGTTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATC
* *
84311134 TTGGATCTGTTTGAGAACATCTGAGAGTCAAATCTGCTATGTTCTCGATTTGTTCCTTGTAAACA
129 TTGGATCTATTTGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACA
* ** *
84311199 CAAGAATGCCAAATCATCTTGGATCTGTTTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTA
194 CAAGAAGGCCAAATCATCTTGGATCTACTTCAGTATAAACATATGAAGGTGAGATCTGCTATGTA
* * * *
84311264 TCTGCTCCCCGTCGAAGTGGAGATGCCAGA
259 TCTGCTCCCCATCGAAATGGAGACGCCAAA
* * * **
84311294 CTTTGATTTTTTCTCTGACAATATAGAGATGCCAAATCATCTTAGATTTGCTTCATTGTAAACAC
1 CTTCGATTTATTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACAC
* * *
84311359 GTGAAAGCCAAATCAGCTAT-GTCTTCGATTCGCTCCTTGTAAGCACAAGAATGCCAAATCATCT
66 GTGAAAGCCAAATCAGCTATGGT-TTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCT
84311423 TGGATCT
130 TGGATCT
84311430 CCTTCAGTAT
Statistics
Matches: 385, Mismatches: 33, Indels: 13
0.89 0.08 0.03
Matches are distributed among these distances:
287 6 0.02
288 128 0.33
289 245 0.64
290 6 0.02
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.32
Consensus pattern (288 bp):
CTTCGATTTATTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACAC
GTGAAAGCCAAATCAGCTATGGTTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTT
GGATCTATTTGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACA
AGAAGGCCAAATCATCTTGGATCTACTTCAGTATAAACATATGAAGGTGAGATCTGCTATGTATC
TGCTCCCCATCGAAATGGAGACGCCAAA
Found at i:84311521 original size:205 final size:205
Alignment explanation
Indices: 84311162--84311672 Score: 853
Period size: 205 Copynumber: 2.5 Consensus size: 205
84311152 ATCTGAGAGT
* * *
84311162 CAAATCTGCTATGT-TCTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTG
1 CAAATCAGCTATGTCT-TCGATTTGTTCCTTGTAAGCACAAGAATGCCAAATCATCTTGGATCTA
* *
84311226 TTTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTCGAAGTGGAGATGCC
65 CTTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTCAAAGTGGAGATGCC
* * *
84311291 AGACTTTGATTTTTTCTCTGACAATATAGAGATGCCAAATCATCTTAGATTTGCTTCATTGTAAA
130 AGACTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAA
84311356 CACGTGAAAGC
195 CACGTGAAAGC
* * *
84311367 CAAATCAGCTATGTCTTCGATTCGCTCCTTGTAAGCACAAGAATGCCAAATCATCTTGGATCTCC
1 CAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGAATGCCAAATCATCTTGGATCTAC
84311432 TTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTCAAAGTGGAGATGCCA
66 TTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTCAAAGTGGAGATGCCA
84311497 GACTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAAC
131 GACTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAAC
84311562 ACGTGAAAGC
196 ACGTGAAAGC
* *
84311572 CAAATCAGCTATGGCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCTTA
1 CAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGAATGCCAAATCATCTTGGATC-TA
* **
84311637 CTACAGTATAAACATCTGAAGGCCAGATCTGCTATG
65 CTTCAGTATAAACATCTGAAGGTGAGATCTGCTATG
84311673 CTGCGGCCTA
Statistics
Matches: 286, Mismatches: 18, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
205 251 0.88
206 35 0.12
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.31
Consensus pattern (205 bp):
CAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGAATGCCAAATCATCTTGGATCTAC
TTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTCAAAGTGGAGATGCCA
GACTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAAC
ACGTGAAAGC
Found at i:84317548 original size:21 final size:21
Alignment explanation
Indices: 84317523--84317566 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
84317513 CACCGGCTCA
84317523 TTGATGGGTACTTCAGTCTCT
1 TTGATGGGTACTTCAGTCTCT
*
84317544 TTGATGGGTACTTCGGTCTCT
1 TTGATGGGTACTTCAGTCTCT
84317565 TT
1 TT
84317567 CTCCTTCTCA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.11, C:0.18, G:0.25, T:0.45
Consensus pattern (21 bp):
TTGATGGGTACTTCAGTCTCT
Found at i:84323778 original size:22 final size:22
Alignment explanation
Indices: 84323753--84323804 Score: 54
Period size: 22 Copynumber: 2.4 Consensus size: 22
84323743 GTGCATGTAT
84323753 AATAATAAT-AACAATGTAACAA
1 AATAATAATAAACAAT-TAACAA
* *
84323775 AAT-ATGATTAAACAATTAATAA
1 AATAAT-AATAAACAATTAACAA
84323797 AATAATAA
1 AATAATAA
84323805 AAATACAACA
Statistics
Matches: 24, Mismatches: 3, Indels: 6
0.73 0.09 0.18
Matches are distributed among these distances:
21 2 0.08
22 14 0.58
23 8 0.33
ACGTcount: A:0.63, C:0.06, G:0.04, T:0.27
Consensus pattern (22 bp):
AATAATAATAAACAATTAACAA
Found at i:84338098 original size:40 final size:40
Alignment explanation
Indices: 84338032--84338198 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
84338022 AAATTGAATG
* * *
84338032 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
84338071 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
84338111 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
84338151 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
84338191 ATATCCGG
1 ATATCCGG
84338199 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:84346105 original size:40 final size:40
Alignment explanation
Indices: 84346039--84346205 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
84346029 AAATTGAATG
* * *
84346039 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
84346078 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
84346118 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
84346158 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
84346198 ATATCCGG
1 ATATCCGG
84346206 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:84358385 original size:27 final size:26
Alignment explanation
Indices: 84358345--84358485 Score: 174
Period size: 27 Copynumber: 5.2 Consensus size: 26
84358335 AGGAAGCGTC
*
84358345 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
84358372 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
* *
84358399 CTGGTGGCTATGCCATGATTATCTGAT
1 CTGGTGGCTCTGCCA-CATTATCTGAT
*
84358426 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
* *
84358453 CTGGTGCCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACATTATCTG-AT
84358480 CTGGTG
1 CTGGTG
84358486 ACTTCATCAC
Statistics
Matches: 99, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
26 10 0.10
27 87 0.88
28 2 0.02
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.35
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:84358427 original size:54 final size:53
Alignment explanation
Indices: 84358345--84358485 Score: 212
Period size: 54 Copynumber: 2.6 Consensus size: 53
84358335 AGGAAGCGTC
84358345 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCA-AATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
*
84358399 CTGGTGGCTATGCCATGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCA-AATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* *
84358453 CTGGTGCCTCTGCCACAA-TATCTGTATCTGGTG
1 CTGGTGGCTATGCCA-AATTATCTG-ATCTGGTG
84358486 ACTTCATCAC
Statistics
Matches: 80, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
53 6 0.08
54 74 0.93
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.35
Consensus pattern (53 bp):
CTGGTGGCTATGCCAAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:84363162 original size:40 final size:39
Alignment explanation
Indices: 84363117--84363243 Score: 121
Period size: 40 Copynumber: 3.2 Consensus size: 39
84363107 CGGAACATAA
84363117 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
84363157 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
84363197 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
*
84363237 CCAGATA
1 CCGGATA
84363244 AAATTTCCAG
Statistics
Matches: 69, Mismatches: 14, Indels: 8
0.76 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 66 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:84363267 original size:80 final size:80
Alignment explanation
Indices: 84363133--84363282 Score: 189
Period size: 80 Copynumber: 1.9 Consensus size: 80
84363123 ATAACCATGT
* * *
84363133 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCAGATAAAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
84363197 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * *
84363213 GCACAATTGCCTTCGGGTCTTAACCCAGATAAAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCAGATAAAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
84363276 CCCGGAT
64 CCCGGAT
84363283 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
79 3 0.05
80 56 0.93
81 1 0.02
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCAGATAAAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:84370113 original size:16 final size:16
Alignment explanation
Indices: 84370092--84370122 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
84370082 GACTTAGAAC
84370092 TAAATTATAAATATTG
1 TAAATTATAAATATTG
*
84370108 TAAATTGTAAATATT
1 TAAATTATAAATATT
84370123 TTGCCTGGGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.06, T:0.45
Consensus pattern (16 bp):
TAAATTATAAATATTG
Found at i:84375099 original size:27 final size:28
Alignment explanation
Indices: 84375041--84375099 Score: 68
Period size: 27 Copynumber: 2.2 Consensus size: 28
84375031 CCTCTGTGAA
*
84375041 GAACTCTAAAGGAATGGTAATCATGGAC
1 GAACTCTAAAGGAATGATAATCATGGAC
* * *
84375069 -AACTTTAAAGGAATGATATTCATTG-C
1 GAACTCTAAAGGAATGATAATCATGGAC
84375095 GAACT
1 GAACT
84375100 ACGAAGAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
26 1 0.04
27 25 0.96
ACGTcount: A:0.39, C:0.14, G:0.20, T:0.27
Consensus pattern (28 bp):
GAACTCTAAAGGAATGATAATCATGGAC
Found at i:84377925 original size:15 final size:16
Alignment explanation
Indices: 84377905--84377940 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
84377895 TGAGACATTG
84377905 GTGTGTGACTCA-GTC
1 GTGTGTGACTCAGGTC
*
84377920 GTGTGTGTCTCAGGTC
1 GTGTGTGACTCAGGTC
84377936 GTGTG
1 GTGTG
84377941 AGGCACACTG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 11 0.58
16 8 0.42
ACGTcount: A:0.08, C:0.17, G:0.39, T:0.36
Consensus pattern (16 bp):
GTGTGTGACTCAGGTC
Found at i:84385828 original size:46 final size:45
Alignment explanation
Indices: 84385730--84385946 Score: 199
Period size: 46 Copynumber: 4.7 Consensus size: 45
84385720 TCATATTTGT
* **
84385730 GCCGATGCCATGTCCCAAACATGGTCTTACACTAAC-ACATCTCGTA-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTACATCTCG-AG
* *
84385776 GTCGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC-TACATCTCGAG
* ** *
84385822 GCCGATGCATGTCCCAGACATGTCTTACACTAGCGCTA-GTCTTAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACT-G-GCTACATCTCGAG
* * *
84385868 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-ACAT-CTCGAG
*
84385916 GCCGATGCATGTCCCAGTCATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
84385947 AGCTCACACA
Statistics
Matches: 145, Mismatches: 16, Indels: 20
0.80 0.09 0.11
Matches are distributed among these distances:
44 11 0.08
45 14 0.10
46 68 0.47
47 31 0.21
48 20 0.14
49 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTACATCTCGAG
Found at i:84385896 original size:94 final size:92
Alignment explanation
Indices: 84385683--84385949 Score: 260
Period size: 94 Copynumber: 2.8 Consensus size: 92
84385673 GTCAGGTGCT
** * *
84385683 GATGTCATGTCCCAGACATGGTCTTACACAAGCTCTATCATATTTG-TGCCGATGCCATGTCCCA
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTC--TCATA-ATGAGGCCGATG-CATGTCCCA
* * * *
84385747 AACATGGTCTTACACTAACAC-A-TCTCGT-A-GTC
60 GACAT-GTCTTACACTAGCGCTAGTCT--TAATGCC
* *
84385779 GATGCATGTCCCAGACATGTCTTACACTGGCT-TACGT-CTCGAGGCCGATGCATGTCCCAGACA
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCT-CATAAT-GAGGCCGATGCATGTCCCAGACA
84385842 TGTCTTACACTAGCGCTAGTCTTAATGCC
64 TGTCTTACACTAGCGCTAGTCTTAATGCC
* *
84385871 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCCCAGTCA
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATAATGAGGCCGATGCATGTCCCAGACA
84385936 TGTCTTACACTAGC
64 TGTCTTACACTAGC
84385950 TCACACAAGT
Statistics
Matches: 147, Mismatches: 13, Indels: 24
0.80 0.07 0.13
Matches are distributed among these distances:
90 15 0.10
91 17 0.12
92 18 0.12
93 14 0.10
94 63 0.43
95 16 0.11
96 4 0.03
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (92 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTCTCATAATGAGGCCGATGCATGTCCCAGACATG
TCTTACACTAGCGCTAGTCTTAATGCC
Found at i:84385942 original size:140 final size:140
Alignment explanation
Indices: 84385683--84385946 Score: 338
Period size: 140 Copynumber: 1.9 Consensus size: 140
84385673 GTCAGGTGCT
* **
84385683 GATGTCATGTCCCAGACATGGTCTTACACAAGCTCTATCATATTTGTGCCGATGCCATGTCCCAA
1 GATGTCATGTCCCAGACATGGTCTTACACAAGCGCTATC--ATTAATGCCGATGCCATGTCCCAA
*
84385748 ACATGGTCTTACACTAACACATCTCGTAGTCGATGCATGTCCCAGACATGTCTTACACTGGCTTA
64 ACATGGTCTTACACTAACACATCTCGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTA
84385813 CGTCTCGAGGCC
129 CGTCTCGAGGCC
* *
84385825 GATG-CATGTCCCAGACAT-GTCTTACACTAGCGCTAGTC-TTAATGCCGATGCCATGTCCCAGA
1 GATGTCATGTCCCAGACATGGTCTTACACAAGCGCTA-TCATTAATGCCGATGCCATGTCCCAAA
** * * * *
84385887 CATGGTCTTACACTGGCTC-TCATAATGTGGCCGATGCATGTCCCAGTCATGTCTTACACT
65 CATGGTCTTACACTAACACATC-T--CGTAGCCGATGCATGTCCCAGACATGTCTTACACT
84385947 AGCTCACACA
Statistics
Matches: 106, Mismatches: 12, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
137 2 0.02
138 38 0.36
140 46 0.43
141 16 0.15
142 4 0.04
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (140 bp):
GATGTCATGTCCCAGACATGGTCTTACACAAGCGCTATCATTAATGCCGATGCCATGTCCCAAAC
ATGGTCTTACACTAACACATCTCGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACG
TCTCGAGGCC
Found at i:84392355 original size:28 final size:28
Alignment explanation
Indices: 84392315--84392380 Score: 105
Period size: 28 Copynumber: 2.4 Consensus size: 28
84392305 GTGTCCCTGG
* *
84392315 CCCGTGTGCTTTACACGGCCATGACATA
1 CCCGTGTCCTTTACACGGCCATGACACA
*
84392343 CCCGTGTCCTTTACACGGCCATGACACG
1 CCCGTGTCCTTTACACGGCCATGACACA
84392371 CCCGTGTCCT
1 CCCGTGTCCT
84392381 AGCCCATGTG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.17, C:0.38, G:0.21, T:0.24
Consensus pattern (28 bp):
CCCGTGTCCTTTACACGGCCATGACACA
Found at i:84395168 original size:39 final size:40
Alignment explanation
Indices: 84395054--84395238 Score: 180
Period size: 40 Copynumber: 4.7 Consensus size: 40
84395044 ACGACTCGCT
** * *
84395054 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTTGCA
** * *
84395094 TGAATGCCTTCGGGACTTAACCCGGGTTTAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTTGCA
* *
84395134 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTTGCA
* * * * *
84395173 CGAATGCCTTC-GGATCCTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTT-GCA
84395214 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
84395239 CATCATTCGA
Statistics
Matches: 117, Mismatches: 23, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
38 2 0.02
39 31 0.26
40 73 0.62
41 11 0.09
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTTGCA
Found at i:84395170 original size:79 final size:82
Alignment explanation
Indices: 84395054--84395238 Score: 220
Period size: 79 Copynumber: 2.3 Consensus size: 82
84395044 ACGACTCGCT
** * * *
84395054 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCATGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
84395117 GGGTTTAGTAACTT-GCA
65 GGATATAGTAACTTAGCA
* **
84395134 CAAATGCCTTCGGG-CTTAGCCCGGATT-TATTAACTCGCACGAATGCCTTCGGATCCTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAATGCCTTCGGATCCTAACCCG
*
84395197 GATATAGTCACTTAGCA
66 GATATAGTAACTTAGCA
84395214 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
84395239 CATCATTCGA
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 3 0.03
79 53 0.59
80 34 0.38
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAATGCCTTCGGATCCTAACCCG
GATATAGTAACTTAGCA
Found at i:84397319 original size:92 final size:92
Alignment explanation
Indices: 84397162--84397347 Score: 354
Period size: 92 Copynumber: 2.0 Consensus size: 92
84397152 AAAAGTTAAA
*
84397162 ATGTTAGGGGTGAATTTGTAATTTTTCATAAATATGAAATGTGGATTAAATTGAATACTAAAGTA
1 ATGTTAGGGGTGAATTTGTAATTTTGCATAAATATGAAATGTGGATTAAATTGAATACTAAAGTA
*
84397227 TTTAATTGAATGAAATTACGTATTTAG
66 TTTAATTGAATGAAATTACCTATTTAG
84397254 ATGTTAGGGGTGAATTTGTAATTTTGCATAAATATGAAATGTGGATTAAATTGAATACTAAAGTA
1 ATGTTAGGGGTGAATTTGTAATTTTGCATAAATATGAAATGTGGATTAAATTGAATACTAAAGTA
84397319 TTTAATTGAATGAAATTACCTATTTAG
66 TTTAATTGAATGAAATTACCTATTTAG
84397346 AT
1 AT
84397348 CAAGATAAAT
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
92 92 1.00
ACGTcount: A:0.38, C:0.04, G:0.18, T:0.40
Consensus pattern (92 bp):
ATGTTAGGGGTGAATTTGTAATTTTGCATAAATATGAAATGTGGATTAAATTGAATACTAAAGTA
TTTAATTGAATGAAATTACCTATTTAG
Found at i:84399138 original size:60 final size:60
Alignment explanation
Indices: 84399058--84399196 Score: 158
Period size: 60 Copynumber: 2.3 Consensus size: 60
84399048 ATTAGAGTTA
*
84399058 ACTGGGCCTTAGCCCATATCAATATT-AATCTGGGCCATAGCCC-CTTAC-AGTATCAGATTAT
1 ACTGGGCC-TAGCCCATATCAAT-TTCAATCTGGGCCATAGCCCTATTACAAGT-TCAGA-TAT
* * * *
84399119 ACTGGGCCTAGCCCATATCAGTTTCAATCTTGGCCGTAGCCCTATTACAAGTTGAGATAT
1 ACTGGGCCTAGCCCATATCAATTTCAATCTGGGCCATAGCCCTATTACAAGTTCAGATAT
* *
84399179 ATTGGGCCTTGCCCATAT
1 ACTGGGCCTAGCCCATAT
84399197 TAACACAGTT
Statistics
Matches: 68, Mismatches: 7, Indels: 7
0.83 0.09 0.09
Matches are distributed among these distances:
59 2 0.03
60 47 0.69
61 16 0.24
62 3 0.04
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (60 bp):
ACTGGGCCTAGCCCATATCAATTTCAATCTGGGCCATAGCCCTATTACAAGTTCAGATAT
Found at i:84399214 original size:20 final size:20
Alignment explanation
Indices: 84399189--84399234 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
84399179 ATTGGGCCTT
84399189 GCCCATATT-AACACAGTTGG
1 GCCCATATTCAACACAGTT-G
*
84399209 GCCCAT-TTCAATACAGTTG
1 GCCCATATTCAACACAGTTG
84399228 GCCCATA
1 GCCCATA
84399235 ACAAAATGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (20 bp):
GCCCATATTCAACACAGTTG
Found at i:84400802 original size:60 final size:60
Alignment explanation
Indices: 84400709--84400832 Score: 230
Period size: 60 Copynumber: 2.1 Consensus size: 60
84400699 TATATTCGAA
*
84400709 TCCCTTGTTTTGCTCCTTAATTTTAGCCCTTAGCACAGTTTGAATTTCATTTAAACTCCT
1 TCCCTTATTTTGCTCCTTAATTTTAGCCCTTAGCACAGTTTGAATTTCATTTAAACTCCT
*
84400769 TCCCTTATTTTGCTCCTTAATTTTAGCCCTTAGCACATTTTGAATTTCATTTAAACTCCT
1 TCCCTTATTTTGCTCCTTAATTTTAGCCCTTAGCACAGTTTGAATTTCATTTAAACTCCT
84400829 TCCC
1 TCCC
84400833 ACCGTTTAGT
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
60 62 1.00
ACGTcount: A:0.20, C:0.27, G:0.08, T:0.45
Consensus pattern (60 bp):
TCCCTTATTTTGCTCCTTAATTTTAGCCCTTAGCACAGTTTGAATTTCATTTAAACTCCT
Found at i:84405105 original size:39 final size:39
Alignment explanation
Indices: 84405040--84405190 Score: 135
Period size: 39 Copynumber: 3.7 Consensus size: 39
84405030 ACGTTGTTTG
* *
84405040 AAATTATA-TTTAAGTCTTTAAATAAATTATAGTAAGTT
1 AAATTATATTTTAAGTCTCTAATTAAATTATAGTAAGTT
* * *
84405078 AAATTATATTTTAAATCTCTAAGTAAATTCT-GTTAAGTT
1 AAATTATATTTTAAGTCTCTAATTAAATTATAG-TAAGTT
* ** *
84405117 AACAATTAAATTATGTTGAACCCTCTAATTAAATTATATTAAGTT
1 -A-AATT--A-TAT-TTTAAGTCTCTAATTAAATTATAGTAAGTT
*
84405162 ACATTATATTTTAAGTCTCTAATTAAATT
1 AAATTATATTTTAAGTCTCTAATTAAATT
84405191 TGTGTGATGA
Statistics
Matches: 90, Mismatches: 14, Indels: 17
0.74 0.12 0.14
Matches are distributed among these distances:
38 9 0.10
39 41 0.46
40 4 0.04
41 5 0.06
43 4 0.04
44 4 0.04
45 23 0.26
ACGTcount: A:0.41, C:0.08, G:0.07, T:0.44
Consensus pattern (39 bp):
AAATTATATTTTAAGTCTCTAATTAAATTATAGTAAGTT
Found at i:84407232 original size:25 final size:25
Alignment explanation
Indices: 84407198--84407248 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
84407188 TAGGCCCATT
*
84407198 TTCACAACTCGTGTGAGCATTTTCA
1 TTCACAACTCGTGTGAGCATTATCA
84407223 TTCACAACTCGTGTGAGCATTATCA
1 TTCACAACTCGTGTGAGCATTATCA
84407248 T
1 T
84407249 CACGTGTATC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.25, C:0.24, G:0.16, T:0.35
Consensus pattern (25 bp):
TTCACAACTCGTGTGAGCATTATCA
Found at i:84410622 original size:25 final size:25
Alignment explanation
Indices: 84410593--84410640 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
84410583 TTATAATATG
* * *
84410593 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
84410618 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
84410641 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:84410709 original size:20 final size:20
Alignment explanation
Indices: 84410684--84410742 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
84410674 TAAATATGGT
84410684 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
84410704 ATGTATGATACGCACATGAT
1 ATGTATGATATGCACATGAA
84410724 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
84410743 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:84410823 original size:23 final size:24
Alignment explanation
Indices: 84410793--84410887 Score: 124
Period size: 24 Copynumber: 4.0 Consensus size: 24
84410783 GAGGAAGTGA
84410793 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
84410816 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
84410840 GAAAGGGCTT-TGGCCCCAGTTATT
1 AAAAGGGCTTAT-GCCCCAGTTATT
*
84410864 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
84410888 ATGATAAAGC
Statistics
Matches: 64, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
23 23 0.36
24 30 0.47
25 11 0.17
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:84410861 original size:47 final size:49
Alignment explanation
Indices: 84410794--84410887 Score: 133
Period size: 47 Copynumber: 2.0 Consensus size: 49
84410784 AGGAAGTGAA
*
84410794 AAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTATTG
1 AAAGGGCTTATGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTATTG
84410841 AAAGGGCTT-TGGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
1 AAAGGGCTTAT-GCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
84410888 ATGATAAAGC
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
46 1 0.02
47 19 0.45
48 11 0.26
49 11 0.26
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (49 bp):
AAAGGGCTTATGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTATTG
Found at i:84411130 original size:38 final size:38
Alignment explanation
Indices: 84411079--84411172 Score: 152
Period size: 38 Copynumber: 2.4 Consensus size: 38
84411069 CGTTTACAGT
*
84411079 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACACGA
*
84411117 AAAGGCTTCGGCCCAGTATTATGAAATATGAAATACGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACACGA
*
84411155 AAAGGGCTACGGCCCAGT
1 AAA-GGCTTCGGCCCAGT
84411173 GCATGATTGA
Statistics
Matches: 52, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
38 39 0.75
39 13 0.25
ACGTcount: A:0.37, C:0.18, G:0.23, T:0.21
Consensus pattern (38 bp):
AAAGGCTTCGGCCCAGTATTATGAAATATGAAACACGA
Found at i:84418374 original size:19 final size:19
Alignment explanation
Indices: 84418343--84418396 Score: 56
Period size: 19 Copynumber: 2.8 Consensus size: 19
84418333 TTGTTCATAT
84418343 GGGAACCAT-TTGTTGACAA
1 GGGAA-CATCTTGTTGACAA
* * *
84418362 GGGAACATCTTGTTTATAT
1 GGGAACATCTTGTTGACAA
*
84418381 TGGAACATCTTGTTGA
1 GGGAACATCTTGTTGA
84418397 TAAGAATGCA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
18 3 0.10
19 26 0.90
ACGTcount: A:0.28, C:0.13, G:0.24, T:0.35
Consensus pattern (19 bp):
GGGAACATCTTGTTGACAA
Found at i:84423971 original size:6 final size:7
Alignment explanation
Indices: 84423951--84424000 Score: 64
Period size: 7 Copynumber: 7.1 Consensus size: 7
84423941 TGTTTTGTTA
84423951 TAAAATT
1 TAAAATT
84423958 TAAAATT
1 TAAAATT
*
84423965 TAAATTT
1 TAAAATT
84423972 TAAAATT
1 TAAAATT
*
84423979 CAAAATT
1 TAAAATT
*
84423986 CAAAATT
1 TAAAATT
*
84423993 CAAAATT
1 TAAAATT
84424000 T
1 T
84424001 TTTTGTTTAA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 39 1.00
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.40
Consensus pattern (7 bp):
TAAAATT
Found at i:84429773 original size:19 final size:19
Alignment explanation
Indices: 84429730--84429773 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
84429720 AGTAAAATGT
* *
84429730 TTTTCGGAAAATGATTTAT
1 TTTTCTGAAAATGATTTAC
84429749 TTTTCTGAAAATGATTTAC
1 TTTTCTGAAAATGATTTAC
84429768 TTTTCT
1 TTTTCT
84429774 AGTGTTTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.27, C:0.09, G:0.11, T:0.52
Consensus pattern (19 bp):
TTTTCTGAAAATGATTTAC
Found at i:84430211 original size:44 final size:44
Alignment explanation
Indices: 84430148--84430234 Score: 174
Period size: 44 Copynumber: 2.0 Consensus size: 44
84430138 TTTATGAATT
84430148 CTGGCAAATAGATCCATAATTCCAAATACATAAAGAGAAAAAAG
1 CTGGCAAATAGATCCATAATTCCAAATACATAAAGAGAAAAAAG
84430192 CTGGCAAATAGATCCATAATTCCAAATACATAAAGAGAAAAAA
1 CTGGCAAATAGATCCATAATTCCAAATACATAAAGAGAAAAAA
84430235 AGCATGTATA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.53, C:0.16, G:0.13, T:0.18
Consensus pattern (44 bp):
CTGGCAAATAGATCCATAATTCCAAATACATAAAGAGAAAAAAG
Found at i:84432485 original size:14 final size:14
Alignment explanation
Indices: 84432466--84432494 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
84432456 AGAAAAGCCT
84432466 GAAAAGCTTTTACA
1 GAAAAGCTTTTACA
84432480 GAAAAGCTTTTACA
1 GAAAAGCTTTTACA
84432494 G
1 G
84432495 GTTACCAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (14 bp):
GAAAAGCTTTTACA
Found at i:84435032 original size:11 final size:11
Alignment explanation
Indices: 84435016--84435040 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
84435006 ACAACTGTCA
84435016 TTTGTTATACT
1 TTTGTTATACT
84435027 TTTGTTATACT
1 TTTGTTATACT
84435038 TTT
1 TTT
84435041 TTCATTGATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.08, G:0.08, T:0.68
Consensus pattern (11 bp):
TTTGTTATACT
Found at i:84435528 original size:18 final size:18
Alignment explanation
Indices: 84435505--84435544 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
84435495 CATATTCTTT
84435505 AGTGTCGTTTGTAATAAA
1 AGTGTCGTTTGTAATAAA
84435523 AGTGTCGTTTGTAATAAA
1 AGTGTCGTTTGTAATAAA
84435541 AGTG
1 AGTG
84435545 CCTCTGAAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.38
Consensus pattern (18 bp):
AGTGTCGTTTGTAATAAA
Found at i:84439829 original size:17 final size:17
Alignment explanation
Indices: 84439807--84439840 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
84439797 CCTAAAATCT
84439807 AATTTAGCCTCTAATTA
1 AATTTAGCCTCTAATTA
* *
84439824 AATTTATCCTTTAATTA
1 AATTTAGCCTCTAATTA
84439841 TAATATAATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.35, C:0.15, G:0.03, T:0.47
Consensus pattern (17 bp):
AATTTAGCCTCTAATTA
Found at i:84439946 original size:54 final size:53
Alignment explanation
Indices: 84439882--84440029 Score: 178
Period size: 49 Copynumber: 2.8 Consensus size: 53
84439872 GTCCCATTAT
* *
84439882 AATATAAATTATCCTTTAATTAAATTCAATTTTTAATATAAATTTATTACTTTA
1 AATATAAATTATCCTATAATTAAATTC-ATTTTTAATTTAAATTTATTACTTTA
* *
84439936 AATATAAATTAT-CTATAATT-AATT-A-TTTTAATTTTAATTTATTGCTTTA
1 AATATAAATTATCCTATAATTAAATTCATTTTTAATTTAAATTTATTACTTTA
* * * *
84439985 AATATAATTTATCATCTAATTAAATTCTATTTTTATTTTAAATTT
1 AATATAAATTATCCTATAATTAAATTC-ATTTTTAATTTAAATTT
84440030 CTTGTTTTAC
Statistics
Matches: 80, Mismatches: 9, Indels: 10
0.81 0.09 0.10
Matches are distributed among these distances:
49 32 0.40
50 7 0.09
51 4 0.05
52 4 0.05
53 8 0.10
54 25 0.31
ACGTcount: A:0.40, C:0.06, G:0.01, T:0.53
Consensus pattern (53 bp):
AATATAAATTATCCTATAATTAAATTCATTTTTAATTTAAATTTATTACTTTA
Found at i:84440291 original size:52 final size:51
Alignment explanation
Indices: 84440161--84440290 Score: 138
Period size: 51 Copynumber: 2.6 Consensus size: 51
84440151 GGGTATCGAC
* * * * * *
84440161 CATCAGTACCCCAGCA-CTAATTTTTTTAAATTTGGTACAAGAGTGTCAGT
1 CATCAGTATCCCAACACCCAATTTTTTTTAATCTGGTACAAGAGTGTCAAT
* * *
84440211 CATTAGTATCCCAACATCCAATTTTTTTTAATCTGGTACAAGATTGTCAAT
1 CATCAGTATCCCAACACCCAATTTTTTTTAATCTGGTACAAGAGTGTCAAT
**
84440262 CATCAGTATCTTAGA-ACCCAATTTTTTTT
1 CATCAGTATCCCA-ACACCCAATTTTTTTT
84440291 TTTTTTTGAT
Statistics
Matches: 66, Mismatches: 12, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
50 13 0.20
51 52 0.79
52 1 0.02
ACGTcount: A:0.30, C:0.20, G:0.12, T:0.38
Consensus pattern (51 bp):
CATCAGTATCCCAACACCCAATTTTTTTTAATCTGGTACAAGAGTGTCAAT
Found at i:84443662 original size:43 final size:43
Alignment explanation
Indices: 84443486--84443663 Score: 191
Period size: 43 Copynumber: 4.1 Consensus size: 43
84443476 TTTGGGATAG
* * *
84443486 TGGCATCGATATATGATTTCGTGTAAGACCACGTCTGGGACGT
1 TGGCATCGATATTTGATTACGTGTAAGACCATGTCTGGGACGT
* *
84443529 TGGCATCGAT-TTGAGATTTACGTGTAAGACCATGTCTGGGACAT
1 TGGCATCGATATT-TGA-TTACGTGTAAGACCATGTCTGGGACGT
* ** * * *
84443573 TGGCATCGA-ATTTAATTTTGTGTAAGACCCTGTTTGGGATAG-
1 TGGCATCGATATTTGATTACGTGTAAGACCATGTCTGGGA-CGT
* *
84443615 TGGCATCGATATTTGATTACATGTAAGACCATATCTGGGACGT
1 TGGCATCGATATTTGATTACGTGTAAGACCATGTCTGGGACGT
84443658 TGGCAT
1 TGGCAT
84443664 TGTACGAGTA
Statistics
Matches: 108, Mismatches: 21, Indels: 12
0.77 0.15 0.09
Matches are distributed among these distances:
42 31 0.29
43 42 0.39
44 35 0.32
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.33
Consensus pattern (43 bp):
TGGCATCGATATTTGATTACGTGTAAGACCATGTCTGGGACGT
Found at i:84448657 original size:53 final size:47
Alignment explanation
Indices: 84448577--84448846 Score: 260
Period size: 45 Copynumber: 5.9 Consensus size: 47
84448567 GGTGAAATGT
*
84448577 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATGTTATTCA
1 TATTCAGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA-G-TA-T-A
84448628 GGTATTCAGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA-TAT-
1 --TATTCAGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAAGTATA
* * * * *
84448675 TATTCGGGCCTTTGAGCCTAGCAGGCTATGACGCTGGTGAGA-TAT-
1 TATTCAGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAAGTATA
84448720 TATTCAGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTG--AG-ATA
1 TATTCAGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAAGTATA
* * * *
84448764 CTATTC-GGGCTTTCGAGCCTAACAGGCTATAATGCCAGTGAAA-T-GA
1 -TATTCAGGCCTTT-GAGCCTAGCAGGCTATAATGCCGGTGAAAGTATA
* * *
84448810 TA-TCGGGCC-TCGAGCCTAGCAGGC-AAAATGCCGGTGA
1 TATTCAGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
84448847 TTTGAGAAAA
Statistics
Matches: 190, Mismatches: 19, Indels: 27
0.81 0.08 0.11
Matches are distributed among these distances:
42 11 0.06
43 15 0.08
44 9 0.05
45 109 0.57
46 1 0.01
47 1 0.01
49 1 0.01
50 2 0.01
53 41 0.22
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (47 bp):
TATTCAGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAAGTATA
Found at i:84448694 original size:45 final size:45
Alignment explanation
Indices: 84448630--84448846 Score: 273
Period size: 45 Copynumber: 4.9 Consensus size: 45
84448620 GTTATTCAGG
*
84448630 TATTCAGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATAT
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATAT
* * * *
84448675 TATTCGGGCCTTTGAGCCTAGCAGGCTATGACGCTGGTGAGATAT
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATAT
* * *
84448720 TATTCAGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATAT
* *
84448765 TATTCGGG-CTTTCGAGCCTAACAGGCTATAATGCCAGTGAAATGA-
1 TATTCGGGCCTTT-GAGCCTAGCAGGCTATAATGCCGGTGAAAT-AT
* *
84448810 TA-TCGGGCC-TCGAGCCTAGCAGGC-AAAATGCCGGTGA
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
84448847 TTTGAGAAAA
Statistics
Matches: 151, Mismatches: 18, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
42 11 0.07
43 12 0.08
44 10 0.07
45 117 0.77
46 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (45 bp):
TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATAT
Found at i:84456767 original size:43 final size:44
Alignment explanation
Indices: 84456720--84456819 Score: 123
Period size: 44 Copynumber: 2.3 Consensus size: 44
84456710 AGACCTTGTC
*
84456720 TGGGACAATGGCAACGATAT-ATGATTT-CGTGTAAAACCACGTT
1 TGGGACATTGGCAACGATATGA-GATTTACGTGTAAAACCACGTT
* * * * *
84456763 TGGGACGTTGGCATCGATTTGAGATTTACGTGTAAGACCATGTT
1 TGGGACATTGGCAACGATATGAGATTTACGTGTAAAACCACGTT
84456807 TGGGACATTGGCA
1 TGGGACATTGGCA
84456820 TTATATTTAA
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
43 21 0.44
44 27 0.56
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (44 bp):
TGGGACATTGGCAACGATATGAGATTTACGTGTAAAACCACGTT
Found at i:84456810 original size:44 final size:43
Alignment explanation
Indices: 84456696--84456896 Score: 151
Period size: 43 Copynumber: 4.7 Consensus size: 43
84456686 TTCCGAGATG
* * * * *
84456696 TGAGATATCGTGTAAGACCTTGTCTGGGACAATGGCAACGATA
1 TGAGATTTCGTGTAAGACCATGTTTGGGACATTGGCATCGATA
* * * *
84456739 T-ATGATTTCGTGTAAAACCACGTTTGGGACGTTGGCATCGATT
1 TGA-GATTTCGTGTAAGACCATGTTTGGGACATTGGCATCGATA
*
84456782 TGAGATTTACGTGTAAGACCATGTTTGGGACATTGGCAT-TATA
1 TGAGATTT-CGTGTAAGACCATGTTTGGGACATTGGCATCGATA
* * * * * *
84456825 TTTA-ATTTCATGTAAGACCCTGTCTGGG-CAATGACATCGATA
1 -TGAGATTTCGTGTAAGACCATGTTTGGGACATTGGCATCGATA
* * * *
84456867 T-ATGATTACATGTAAGACAATGTCTGGGAC
1 TGA-GATTTCGTGTAAGACCATGTTTGGGAC
84456897 GTTAGCATTG
Statistics
Matches: 126, Mismatches: 24, Indels: 16
0.76 0.14 0.10
Matches are distributed among these distances:
40 1 0.01
41 8 0.06
42 42 0.33
43 45 0.36
44 30 0.24
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.32
Consensus pattern (43 bp):
TGAGATTTCGTGTAAGACCATGTTTGGGACATTGGCATCGATA
Found at i:84460525 original size:5 final size:5
Alignment explanation
Indices: 84460515--84460539 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
84460505 AATTGGGGTT
84460515 GACAG GACAG GACAG GACAG GACAG
1 GACAG GACAG GACAG GACAG GACAG
84460540 AAATGAGCCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.20, G:0.40, T:0.00
Consensus pattern (5 bp):
GACAG
Found at i:84460619 original size:2 final size:2
Alignment explanation
Indices: 84460612--84460641 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
84460602 CCCATATTAG
84460612 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
84460642 GGCATTGGAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:84462578 original size:27 final size:27
Alignment explanation
Indices: 84462538--84462705 Score: 205
Period size: 27 Copynumber: 6.1 Consensus size: 27
84462528 AGGAAGCGTC
*
84462538 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
84462565 CTGGTGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
* *
84462592 CTGGTGGCTATGCCACGATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
84462619 CTGGTGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
*
84462646 CTAGTGGCTCTGCCACAATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* * *
84462674 CTAGTGACTCTGTCACAATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
84462702 CTGG
1 CTGG
84462706 CAGCCATGCT
Statistics
Matches: 125, Mismatches: 11, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
26 4 0.03
27 87 0.70
28 34 0.27
ACGTcount: A:0.19, C:0.24, G:0.21, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:84462620 original size:54 final size:54
Alignment explanation
Indices: 84462538--84462705 Score: 248
Period size: 54 Copynumber: 3.1 Consensus size: 54
84462528 AGGAAGCGTC
84462538 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
*
84462592 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* * * * *
84462646 CTAGTGGCTCTGCCACAATTATCTGTATCTAGTGACTCTGTCACA-ATTATCTGTAT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGGCTCTGCCACATA-TATCTGT-T
84462702 CTGG
1 CTGG
84462706 CAGCCATGCT
Statistics
Matches: 103, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
54 76 0.74
55 23 0.22
56 4 0.04
ACGTcount: A:0.19, C:0.24, G:0.21, T:0.36
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:84463705 original size:18 final size:19
Alignment explanation
Indices: 84463670--84463706 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
84463660 AATGGGTTTA
84463670 CAAAAAAAACAAAGATTTT
1 CAAAAAAAACAAAGATTTT
84463689 CAAAAACAAA-AAA-ATTTT
1 CAAAAA-AAACAAAGATTTT
84463707 ATAAAGATTG
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 5 0.29
19 9 0.53
20 3 0.18
ACGTcount: A:0.65, C:0.11, G:0.03, T:0.22
Consensus pattern (19 bp):
CAAAAAAAACAAAGATTTT
Found at i:84470699 original size:54 final size:54
Alignment explanation
Indices: 84470617--84470763 Score: 222
Period size: 54 Copynumber: 2.7 Consensus size: 54
84470607 AGGAAGCGTC
84470617 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCTATT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCTATT
* * *
84470671 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCTATT
* * * *
84470725 CTGGTGGCTCTACCAAAATTATCTGTATCTGGTGACTCT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGGCTCT
84470764 GTCACAATTA
Statistics
Matches: 84, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
54 72 0.86
55 12 0.14
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.35
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCTATT
Found at i:84470796 original size:28 final size:27
Alignment explanation
Indices: 84470617--84470809 Score: 196
Period size: 27 Copynumber: 7.1 Consensus size: 27
84470607 AGGAAGCGTC
*
84470617 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCAC-ATTATCTGTAT
* *
84470644 CTGGTGGCTCTACCACATATATCTAT-T
1 CTGGTGGCTCTGCCACAT-TATCTGTAT
*
84470671 CTGGTGGCTATGCCACGATTATCTG-AT
1 CTGGTGGCTCTGCCAC-ATTATCTGTAT
84470698 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACAT-TATCTGTAT
* *
84470725 CTGGTGGCTCTACCAAAATTATCTGTAT
1 CTGGTGGCTCTGCC-ACATTATCTGTAT
* *
84470753 CTGGTGACTCTGTCACAATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTAT
* ** *
84470781 CTGGTGACTCTTTCACATTATTTGTAT
1 CTGGTGGCTCTGCCACATTATCTGTAT
84470808 CT
1 CT
84470810 AGCAGCCATG
Statistics
Matches: 142, Mismatches: 15, Indels: 18
0.81 0.09 0.10
Matches are distributed among these distances:
26 4 0.03
27 95 0.67
28 43 0.30
ACGTcount: A:0.20, C:0.23, G:0.19, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATTATCTGTAT
Found at i:84472606 original size:19 final size:19
Alignment explanation
Indices: 84472581--84472671 Score: 125
Period size: 19 Copynumber: 4.9 Consensus size: 19
84472571 ATAATCTTCA
84472581 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
* * *
84472600 GTGATATGGAATCTTTGAT
1 ATGATATGCAATCTTAGAT
84472619 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
84472636 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
84472654 ATGATATACAATCTTAGA
1 ATGATATGCAATCTTAGA
84472672 AGATATGATT
Statistics
Matches: 62, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
17 14 0.23
18 16 0.26
19 32 0.52
ACGTcount: A:0.36, C:0.10, G:0.16, T:0.37
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:84472655 original size:35 final size:37
Alignment explanation
Indices: 84472589--84472678 Score: 116
Period size: 36 Copynumber: 2.5 Consensus size: 37
84472579 CAATGATATG
* * *
84472589 CAATCTTAGATGTGATATGGAATCTTTGATATG-ATA
1 CAATCTTAGATATGATATGCAATCTTAGATATGAATA
84472625 CAATCTTAGATATGAT-TGCAATCTTAGATATGATATA
1 CAATCTTAGATATGATATGCAATCTTAGATATGA-ATA
84472662 CAATCTTAGA-A-GATATG
1 CAATCTTAGATATGATATG
84472679 ATTTTGTAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
35 17 0.35
36 18 0.38
37 13 0.27
ACGTcount: A:0.37, C:0.10, G:0.17, T:0.37
Consensus pattern (37 bp):
CAATCTTAGATATGATATGCAATCTTAGATATGAATA
Found at i:84484735 original size:207 final size:207
Alignment explanation
Indices: 84484380--84485369 Score: 1520
Period size: 207 Copynumber: 4.8 Consensus size: 207
84484370 AGGTTAAAGT
*
84484380 ATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTAGCATCCTTGTG
1 ATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTG
* * *
84484445 CTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCATGTGTTTATGTTGAAGCAAGTCT
66 CTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCT
* * *
84484510 AAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCAAAGTTTGGCGTCTCCATATTCGACG
131 AAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCATCTCCATATTCAACG
84484575 GAAGGCAGACAC
196 GAAGGCAGACAC
84484587 ATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTG
1 ATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTG
* *
84484652 CTTACAAGGAACAAATCGAAGACATAGTTGATTTGGCTTTCATGTGTTTACGTTGAAGCAAATCT
66 CTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCT
* *
84484717 AAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATTGAAGTTTGGCATCTCCATATTCGACG
131 AAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCATCTCCATATTCAACG
*
84484782 GAGGGCAGACAC
196 GAAGGCAGACAC
84484794 ATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTG
1 ATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTG
* * * *
84484859 CTTACAAGGAACAAATCGAAGACATAGCAGATTTGGCTTTCACGTGCTAACGATGAAGCAAATCT
66 CTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCT
* *
84484924 AAGATGATTTGGCATCTCTATATTGTTAGAGAACAAATCGAAGTTTGGCATCTCCATATTCAACG
131 AAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCATCTCCATATTCAACG
* *
84484989 GAGGGTAGACAC
196 GAAGGCAGACAC
84485001 ATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTG
1 ATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTG
* * *
84485066 CTTACAAGGAACAAATTGAAGACAGAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCT
66 CTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCT
* * *
84485131 AAGATGATTTGGCATCTCTGTATTGTCAGAG----AA-C-AA----GGCGTCTCCATATTTAACC
131 AAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCATCTCCATATTCAACG
*
84485186 G-AGGACAGACAT
196 GAAGG-CAGACAC
* ** * * *
84485198 ATAGCAAATCTAACCTTCAGATGATTAGACTGAAGC-AGATCCAAGATGGTTTGGTATCCTTGTG
1 ATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTG
* * * **
84485262 CTTACAAGGAGCAAATCGAAGACATAGTTGATTTGGCTTTCGCGTGTTTACACTGAAGCAAATCT
66 CTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCT
*
84485327 AAGATGATTTGGCATCTCTGTATTGTCATG-GAACAAATTGAAG
131 AAGATGATTTGGCATCTCTGTATTGTCA-GAGAACAAATCGAAG
84485370 AAGTAGATTT
Statistics
Matches: 725, Mismatches: 49, Indels: 22
0.91 0.06 0.03
Matches are distributed among these distances:
196 115 0.16
197 54 0.07
200 2 0.00
201 2 0.00
202 3 0.00
203 2 0.00
207 547 0.75
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (207 bp):
ATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTG
CTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCT
AAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCATCTCCATATTCAACG
GAAGGCAGACAC
Found at i:84485818 original size:54 final size:54
Alignment explanation
Indices: 84485753--84485878 Score: 175
Period size: 54 Copynumber: 2.3 Consensus size: 54
84485743 ATAATCTTCA
* *
84485753 ATGATATGCAATCTTAGATGTGATATGGAATCTTAGATATGA-TACAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATA--CAATCTTAGATATGATTACAATCTTAGAT
* *
84485808 ATGA-CTGCAATCTTAGATATGATACAATCTTAGATATGATTGCAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATACAATCTTAGATATGATTACAATCTTAGAT
*
84485861 ATGATATACAATCTTAGA
1 ATGATATGCAATCTTAGA
84485879 AGATATGATT
Statistics
Matches: 63, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
52 14 0.22
53 16 0.25
54 29 0.46
55 4 0.06
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.36
Consensus pattern (54 bp):
ATGATATGCAATCTTAGATATGATACAATCTTAGATATGATTACAATCTTAGAT
Found at i:84485826 original size:35 final size:35
Alignment explanation
Indices: 84485761--84485878 Score: 173
Period size: 35 Copynumber: 3.3 Consensus size: 35
84485751 CAATGATATG
* *
84485761 CAATCTTAGATGTGATATGGAATCTTAGATATGATA
1 CAATCTTAGATATGA-ATGCAATCTTAGATATGATA
*
84485797 CAATCTTAGATATGACTGCAATCTTAGATATGATA
1 CAATCTTAGATATGAATGCAATCTTAGATATGATA
*
84485832 CAATCTTAGATATGATTGCAATCTTAGATATGATATA
1 CAATCTTAGATATGAATGCAATCTTAGATATG--ATA
84485869 CAATCTTAGA
1 CAATCTTAGA
84485879 AGATATGATT
Statistics
Matches: 76, Mismatches: 4, Indels: 3
0.92 0.05 0.04
Matches are distributed among these distances:
35 49 0.64
36 14 0.18
37 13 0.17
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.36
Consensus pattern (35 bp):
CAATCTTAGATATGAATGCAATCTTAGATATGATA
Found at i:84489980 original size:46 final size:46
Alignment explanation
Indices: 84489927--84490102 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 46
84489917 TGGTTGAGCA
*
84489927 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACG
* * * * * *
84489973 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAAATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATGGATACGA-ACG
*
84490020 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACG
* * *
84490066 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
84490103 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 17, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
45 1 0.01
46 71 0.66
47 35 0.32
48 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACG
Found at i:84490083 original size:93 final size:93
Alignment explanation
Indices: 84489924--84490094 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
84489914 GGATGGTTGA
* * *
84489924 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCATTGAGT
84489989 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
84490017 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCATTGAGT
84490082 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
84490095 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:84494089 original size:17 final size:17
Alignment explanation
Indices: 84494067--84494101 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
84494057 AGTCTAACCC
*
84494067 TATATATTTATTATATA
1 TATATATATATTATATA
*
84494084 TATATATATATTTTATA
1 TATATATATATTATATA
84494101 T
1 T
84494102 CGTAGATTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
TATATATATATTATATA
Found at i:84494207 original size:37 final size:35
Alignment explanation
Indices: 84494166--84494251 Score: 104
Period size: 35 Copynumber: 2.4 Consensus size: 35
84494156 TTATCATATA
*
84494166 TATTATTATTATTTATCGTAT-ATTATTTTTCACAAAT
1 TATTATTATTATTT-TC-CATCATTATTTTT-ACAAAT
* *
84494203 TATTATTATTATTTTCCATCATTATTTTTATATAT
1 TATTATTATTATTTTCCATCATTATTTTTACAAAT
84494238 TATTATTA-TATTTT
1 TATTATTATTATTTT
84494252 ACTTGTATTA
Statistics
Matches: 45, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
34 6 0.13
35 14 0.31
36 11 0.24
37 14 0.31
ACGTcount: A:0.30, C:0.07, G:0.01, T:0.62
Consensus pattern (35 bp):
TATTATTATTATTTTCCATCATTATTTTTACAAAT
Found at i:84494412 original size:30 final size:31
Alignment explanation
Indices: 84494360--84494419 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 31
84494350 TCCAAATTAT
*
84494360 ATTTTTATTATATAACATTTATTA-TATTTA
1 ATTTTTATTATATAACACTTATTATTATTTA
* **
84494390 ATTTTTATTCTATATTACTTATTATTATTT
1 ATTTTTATTATATAACACTTATTATTATTT
84494420 TTTATATATG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 20 0.80
31 5 0.20
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.63
Consensus pattern (31 bp):
ATTTTTATTATATAACACTTATTATTATTTA
Found at i:84494683 original size:24 final size:24
Alignment explanation
Indices: 84494656--84494703 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
84494646 AAAAAAACCC
84494656 AATATATT-TTATCATTCTTTTATA
1 AATATATTGTTATCA-TCTTTTATA
* *
84494680 AATATTTTGTTATCATGTTTTATA
1 AATATATTGTTATCATCTTTTATA
84494704 TATTGTATAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 15 0.71
25 6 0.29
ACGTcount: A:0.31, C:0.06, G:0.04, T:0.58
Consensus pattern (24 bp):
AATATATTGTTATCATCTTTTATA
Found at i:84494914 original size:35 final size:32
Alignment explanation
Indices: 84494888--84494955 Score: 102
Period size: 32 Copynumber: 2.1 Consensus size: 32
84494878 TTGATATTGT
84494888 ATTACT-CTTTTTTGTATATCATACATTATTTA
1 ATTACTAC-TTTTTGTATATCATACATTATTTA
* *
84494920 ATTATTACTTTTTGTATATCATGCATTATTTA
1 ATTACTACTTTTTGTATATCATACATTATTTA
84494952 ATTA
1 ATTA
84494956 TGACTTTGTA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
32 32 0.97
33 1 0.03
ACGTcount: A:0.29, C:0.10, G:0.04, T:0.56
Consensus pattern (32 bp):
ATTACTACTTTTTGTATATCATACATTATTTA
Found at i:84494937 original size:32 final size:32
Alignment explanation
Indices: 84494896--84494962 Score: 116
Period size: 32 Copynumber: 2.1 Consensus size: 32
84494886 GTATTACTCT
*
84494896 TTTTTGTATATCATACATTATTTAATTATTAC
1 TTTTTGTATATCATACATTATTTAATTATGAC
*
84494928 TTTTTGTATATCATGCATTATTTAATTATGAC
1 TTTTTGTATATCATACATTATTTAATTATGAC
84494960 TTT
1 TTT
84494963 GTATGTTTGT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.28, C:0.09, G:0.06, T:0.57
Consensus pattern (32 bp):
TTTTTGTATATCATACATTATTTAATTATGAC
Found at i:84498526 original size:15 final size:15
Alignment explanation
Indices: 84498490--84498539 Score: 54
Period size: 14 Copynumber: 3.5 Consensus size: 15
84498480 CGATATCCTT
84498490 TTTGCAT-TCATGCA
1 TTTGCATCTCATGCA
84498504 TTTGCATCTCATAGCA
1 TTTGCATCTCAT-GCA
84498520 TTT-CATCAT-AT-CA
1 TTTGCATC-TCATGCA
84498533 TTTGCAT
1 TTTGCAT
84498540 TCAAAGTTAT
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
13 5 0.16
14 10 0.31
15 10 0.31
16 7 0.22
ACGTcount: A:0.24, C:0.22, G:0.10, T:0.44
Consensus pattern (15 bp):
TTTGCATCTCATGCA
Found at i:84500303 original size:42 final size:42
Alignment explanation
Indices: 84500244--84500329 Score: 154
Period size: 42 Copynumber: 2.0 Consensus size: 42
84500234 GGGTCATATG
84500244 ATCCAAAATTGCAAAGAGTTCAAGGCCATGGTACAAGGCCTT
1 ATCCAAAATTGCAAAGAGTTCAAGGCCATGGTACAAGGCCTT
* *
84500286 ATCCAAAATTGCAAAGAGTTCATGGCCATGGTACAAGTCCTT
1 ATCCAAAATTGCAAAGAGTTCAAGGCCATGGTACAAGGCCTT
84500328 AT
1 AT
84500330 GGTTAACAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.35, C:0.21, G:0.20, T:0.24
Consensus pattern (42 bp):
ATCCAAAATTGCAAAGAGTTCAAGGCCATGGTACAAGGCCTT
Found at i:84505306 original size:16 final size:16
Alignment explanation
Indices: 84505287--84505317 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
84505277 CTTCTTCACT
84505287 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
84505303 TACTTACTTACTTAA
1 TACTCACTTACTTAA
84505318 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:84505323 original size:20 final size:20
Alignment explanation
Indices: 84505284--84505323 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
84505274 AAACTTCTTC
* *
84505284 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
84505304 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
84505324 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:84505636 original size:53 final size:54
Alignment explanation
Indices: 84505548--84505763 Score: 231
Period size: 55 Copynumber: 4.0 Consensus size: 54
84505538 TACGTGGCAT
* * *
84505548 CCTTTTGAAACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAACCTTG
1 CCTTATGAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTAACCTTG
* * *
84505602 CCTTATG-AACTCACCAATGCCATGCCTTGGCATGGTCTTACATGG-GACCTTTG
1 CCTTATGAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTAACC-TTG
* * * * **
84505655 CCTTATAGTAACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTG
1 CCTTAT-GAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTAACCTTG
* * * *
84505710 CCTTA-GAAACCTTACCAATTTCCATGCCTTGGCATGGTCTTACACGGTATCCTT
1 CCTTATGAAA-CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTAACCTT
84505764 AAACCCTAAT
Statistics
Matches: 135, Mismatches: 21, Indels: 11
0.81 0.13 0.07
Matches are distributed among these distances:
52 3 0.02
53 46 0.34
54 14 0.10
55 70 0.52
56 2 0.01
ACGTcount: A:0.22, C:0.26, G:0.17, T:0.35
Consensus pattern (54 bp):
CCTTATGAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTAACCTTG
Found at i:84512396 original size:16 final size:16
Alignment explanation
Indices: 84512377--84512407 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
84512367 CTTCTTCACT
84512377 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
84512393 TACTTACTTACTTAA
1 TACTCACTTACTTAA
84512408 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:84512413 original size:20 final size:20
Alignment explanation
Indices: 84512374--84512413 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
84512364 AAACTTCTTC
* *
84512374 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
84512394 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
84512414 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:84512728 original size:53 final size:53
Alignment explanation
Indices: 84512599--84512853 Score: 252
Period size: 55 Copynumber: 4.8 Consensus size: 53
84512589 ACACGGGTAC
* * * *
84512599 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCC-T---TT-TGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA
* * *
84512648 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATGAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAA
* * *
84512701 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTAT-G-AA
* * * * **
84512756 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAAAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAA
* *
84512809 CCTTACCAATTGCCATGCCTTGGCATGGTCTTACACGGTATCCTT
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
84512854 AAACCCTAAT
Statistics
Matches: 171, Mismatches: 24, Indels: 16
0.81 0.11 0.08
Matches are distributed among these distances:
49 37 0.22
50 1 0.01
52 2 0.01
53 48 0.28
54 10 0.06
55 71 0.42
56 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (53 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAA
Found at i:84512790 original size:108 final size:110
Alignment explanation
Indices: 84512646--84512843 Score: 310
Period size: 108 Copynumber: 1.8 Consensus size: 110
84512636 ATCCTTTTGA
* * **
84512646 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATGAA-CTCACCAA-
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTGCCTTAAAAACCTCACCAAT
84512709 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
66 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* ** *
84512754 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAAAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTGCCTTAAAAACCTCACCAAT
84512819 TGCCATGCCTTGGCATGGTCTTACA
66 TGCCATGCCTTGGCATGGTCTTACA
84512844 CGGTATCCTT
Statistics
Matches: 80, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
108 48 0.60
109 7 0.09
110 25 0.31
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.34
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTGCCTTAAAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:84518250 original size:2 final size:2
Alignment explanation
Indices: 84518234--84518277 Score: 72
Period size: 2 Copynumber: 22.5 Consensus size: 2
84518224 AATCTAACCC
*
84518234 TA TA TA TT TA T- TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
84518275 TA T
1 TA T
84518278 CGTAGATATT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 38 0.97
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (2 bp):
TA
Found at i:84518525 original size:3 final size:3
Alignment explanation
Indices: 84518519--84518626 Score: 59
Period size: 3 Copynumber: 35.7 Consensus size: 3
84518509 TATATAACAT
* *
84518519 TTA TTA -TA TT- TTA TTT TTA TTC TATA TTA CTTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA -TTA TTA TTA TTA TTA
* *
84518564 TT- TTA -TA TATG TTA TGTA -TA TCA TATA TTA TCTA TTA -TA TTA TTTA
1 TTA TTA TTA T-TA TTA T-TA TTA TTA T-TA TTA T-TA TTA TTA TTA -TTA
84518610 TTA TTCA TTA -TA TTA TT
1 TTA TT-A TTA TTA TTA TT
84518627 TAAAATTTTA
Statistics
Matches: 82, Mismatches: 8, Indels: 30
0.68 0.07 0.25
Matches are distributed among these distances:
2 14 0.17
3 48 0.59
4 20 0.24
ACGTcount: A:0.31, C:0.05, G:0.02, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:84518534 original size:30 final size:32
Alignment explanation
Indices: 84518496--84518567 Score: 87
Period size: 30 Copynumber: 2.3 Consensus size: 32
84518486 ATGTATCCAA
*
84518496 ATTA-TATTTTTATTATATAACATTTATTA-T
1 ATTATTATTTTTATTATATAACACTTATTATT
* **
84518526 ATT-TTATTTTTATTCTATATTACTTATTATT
1 ATTATTATTTTTATTATATAACACTTATTATT
84518557 ATTATTATTTT
1 ATTATTATTTT
84518568 ATATATGTTA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
30 24 0.69
31 4 0.11
32 7 0.20
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.65
Consensus pattern (32 bp):
ATTATTATTTTTATTATATAACACTTATTATT
Found at i:84518611 original size:19 final size:18
Alignment explanation
Indices: 84518519--84518628 Score: 84
Period size: 19 Copynumber: 6.0 Consensus size: 18
84518509 TATATAACAT
*
84518519 TTATTA-TATTTTATTT-
1 TTATTATTATATTATTTA
* *
84518535 TTATT-CTATATTACTTA
1 TTATTATTATATTATTTA
84518552 TTATTATTATTATT-TTATA
1 TTATTATTA-TATTATT-TA
* * *
84518571 TATGTTATGTATATCATATA
1 T-TATTAT-TATATTATTTA
84518591 TTATCTATTATATTATTTA
1 TTAT-TATTATATTATTTA
84518610 TTATTCATTATATTATTTA
1 TTATT-ATTATATTATTTA
84518629 AAATTTTAAA
Statistics
Matches: 74, Mismatches: 10, Indels: 17
0.73 0.10 0.17
Matches are distributed among these distances:
16 13 0.18
17 5 0.07
18 4 0.05
19 35 0.47
20 14 0.19
21 3 0.04
ACGTcount: A:0.31, C:0.05, G:0.02, T:0.63
Consensus pattern (18 bp):
TTATTATTATATTATTTA
Found at i:84518845 original size:24 final size:24
Alignment explanation
Indices: 84518801--84518848 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
84518791 AAAAAAACCC
84518801 AATATATTTTATCATTCTTTTATA
1 AATATATTTTATCATTCTTTTATA
* *
84518825 AATATTTTGTTATCA-TGTTTTATA
1 AATATATT-TTATCATTCTTTTATA
84518849 TATTGTATAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 15 0.71
25 6 0.29
ACGTcount: A:0.31, C:0.06, G:0.04, T:0.58
Consensus pattern (24 bp):
AATATATTTTATCATTCTTTTATA
Found at i:84519081 original size:33 final size:33
Alignment explanation
Indices: 84519039--84519108 Score: 131
Period size: 33 Copynumber: 2.1 Consensus size: 33
84519029 TTGTATTACT
84519039 CTTTTTTGTATATCATACATTATTTAATTATTA
1 CTTTTTTGTATATCATACATTATTTAATTATTA
*
84519072 CTTTTTTGTATATCATGCATTATTTAATTATTA
1 CTTTTTTGTATATCATACATTATTTAATTATTA
84519105 CTTT
1 CTTT
84519109 GTATGTTTGT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.27, C:0.10, G:0.04, T:0.59
Consensus pattern (33 bp):
CTTTTTTGTATATCATACATTATTTAATTATTA
Found at i:84528629 original size:24 final size:24
Alignment explanation
Indices: 84528602--84528649 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
84528592 GCCTTGCCAA
84528602 AATAAAATATTTATATTTCTATTT
1 AATAAAATATTTATATTTCTATTT
84528626 AATAAAATATTTATATTTCTATTT
1 AATAAAATATTTATATTTCTATTT
84528650 TTGAATAAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.42, C:0.04, G:0.00, T:0.54
Consensus pattern (24 bp):
AATAAAATATTTATATTTCTATTT
Found at i:84530205 original size:89 final size:86
Alignment explanation
Indices: 84530089--84530271 Score: 285
Period size: 89 Copynumber: 2.1 Consensus size: 86
84530079 AAACTGGGCC
* * * *
84530089 TAAATCAAGAGTTGTTCCTGATTAATTGTTAAATAAAATTATTTCTAAGTAAGACTCTGCTTAGG
1 TAAATTAAGAGTTGTTCCTGATTAATTGTTAAATAAAATTATTTCTAAGCAAGACTCCGCATAGG
84530154 TAGGATTGTTAAATTAATCATTGT
66 TAGGATTGTTAAA-T--TCATTGT
* *
84530178 TAAATTAAGAGTTGTTCTTGATTAATTGTTAAATAAAATTATTTCTAAGCAAGGCTCCGCATAGG
1 TAAATTAAGAGTTGTTCCTGATTAATTGTTAAATAAAATTATTTCTAAGCAAGACTCCGCATAGG
84530243 TAGGATTGTTAAATTCATTGT
66 TAGGATTGTTAAATTCATTGT
84530264 TAAATTAA
1 TAAATTAA
84530272 TCATTATTAA
Statistics
Matches: 88, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
86 15 0.17
88 1 0.01
89 72 0.82
ACGTcount: A:0.36, C:0.09, G:0.16, T:0.40
Consensus pattern (86 bp):
TAAATTAAGAGTTGTTCCTGATTAATTGTTAAATAAAATTATTTCTAAGCAAGACTCCGCATAGG
TAGGATTGTTAAATTCATTGT
Found at i:84530333 original size:101 final size:101
Alignment explanation
Indices: 84530158--84530370 Score: 363
Period size: 101 Copynumber: 2.1 Consensus size: 101
84530148 CTTAGGTAGG
* * * *
84530158 ATTGTTAAATTAATCATTGTTAAATTAAGAGTTGTTCTTGATTAATTGTTAAATAAAATTATTTC
1 ATTGTTAAATTAATCATTATTAAATCAAGAGTTGTTCCTAATTAATTGTTAAATAAAATTATTTC
* *
84530223 TAAGCAAGGCTCCGCATAGGTAGGATTGTTAAATTC
66 TAAGCAAGGCTCCACATAGGTAGGATTGCTAAATTC
84530259 ATTGTTAAATTAATCATTATTAAATCAAGAGTTGTTCCTAATTAATTGTTAAATAAAATTATTTC
1 ATTGTTAAATTAATCATTATTAAATCAAGAGTTGTTCCTAATTAATTGTTAAATAAAATTATTTC
*
84530324 TAAGCAAGGCTCTACATAGGTAGGATTGCTAAATTC
66 TAAGCAAGGCTCCACATAGGTAGGATTGCTAAATTC
84530360 ATTGTTAAATT
1 ATTGTTAAATT
84530371 CAAACTGTGT
Statistics
Matches: 105, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
101 105 1.00
ACGTcount: A:0.36, C:0.09, G:0.14, T:0.40
Consensus pattern (101 bp):
ATTGTTAAATTAATCATTATTAAATCAAGAGTTGTTCCTAATTAATTGTTAAATAAAATTATTTC
TAAGCAAGGCTCCACATAGGTAGGATTGCTAAATTC
Found at i:84543569 original size:40 final size:40
Alignment explanation
Indices: 84543532--84543756 Score: 269
Period size: 40 Copynumber: 5.7 Consensus size: 40
84543522 GCTACTCGTT
* * *
84543532 CAAATGCCTTCGGGACATAGCCTGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
*
84543572 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
84543612 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
84543652 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* ** * * *
84543691 CGAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
84543732 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
84543757 CATCATTCGA
Statistics
Matches: 163, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
38 2 0.01
39 32 0.20
40 118 0.72
41 11 0.07
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:84543716 original size:119 final size:120
Alignment explanation
Indices: 84543532--84543756 Score: 305
Period size: 119 Copynumber: 1.9 Consensus size: 120
84543522 GCTACTCGTT
* * *
84543532 CAAATGCCTTCGGGACATAGCCTGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAACCCGG
*
84543597 ATTTAGTAACTT-GCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
66 ATATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * **
84543652 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCACACGAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCACACAAATGCCTTCGGGA-CTTAACCC
* *
84543714 GGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 GGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
84543757 CATCATTCGA
Statistics
Matches: 92, Mismatches: 10, Indels: 7
0.84 0.09 0.06
Matches are distributed among these distances:
118 4 0.04
119 67 0.73
120 21 0.23
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.25
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:84551921 original size:38 final size:38
Alignment explanation
Indices: 84551766--84552022 Score: 299
Period size: 38 Copynumber: 6.7 Consensus size: 38
84551756 GCTACTCGTT
* *
84551766 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAT-TAGTAACTCGCA
*
84551806 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGA-TTAGTAACTCGCA
* *
84551846 CAAATGCCTT-GGACTTA-ACCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGA-TTAGTAACTCGCA
84551883 CAAATGCCTTCGGGCTTAGCCCGGATTAGTAACTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATTAGTAACTCGCA
*
84551921 CGAATGCCTTC-GGCTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGG-ATTAGTAACTCGCA
** * * *
84551959 C-AATGCCTTCGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAT-TAGTAAC-TCGCA
84551998 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
84552023 CATCATTCGA
Statistics
Matches: 192, Mismatches: 16, Indels: 18
0.85 0.07 0.08
Matches are distributed among these distances:
37 52 0.27
38 63 0.33
39 19 0.10
40 57 0.30
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (38 bp):
CAAATGCCTTCGGGCTTAGCCCGGATTAGTAACTCGCA
Found at i:84575621 original size:40 final size:40
Alignment explanation
Indices: 84575513--84575722 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
84575503 CGGGATTTAA
* * * * *
84575513 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
84575553 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
84575593 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
84575633 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
84575673 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
84575713 CCGGATATAT
1 CCGGATATAT
84575723 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:84579674 original size:93 final size:92
Alignment explanation
Indices: 84579516--84579685 Score: 232
Period size: 93 Copynumber: 1.8 Consensus size: 92
84579506 GGACGGTTGA
* * * **
84579516 GCATCCGAACTCGTTGAGTTGAGTGCGAGTTACTTATGGATGCAAATGTTTGAACTCGTTGAGTT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTACTTATGGATGCAAACGCCTGAACTCGTTGAGTT
*
84579581 GAGTCCGAGTTCGTGAGATGTAACTAG
66 GAGTCCAAGTTCGTGAGATGTAACTAG
* * * * *
84579608 GCATCCAAACTTGTTGAGTTGAGTCCGATTTCATTTATGGATGCGAACGCCTGAGCTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTT-ACTTATGGATGCAAACGCCTGAACTCGTTGAGT
84579673 TGAGTCCAAGTTC
65 TGAGTCCAAGTTC
84579686 ACTTAGGGGC
Statistics
Matches: 66, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
92 27 0.41
93 39 0.59
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.32
Consensus pattern (92 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTACTTATGGATGCAAACGCCTGAACTCGTTGAGTT
GAGTCCAAGTTCGTGAGATGTAACTAG
Found at i:84586128 original size:46 final size:46
Alignment explanation
Indices: 84586078--84586250 Score: 163
Period size: 46 Copynumber: 3.7 Consensus size: 46
84586068 ATGGTTAGCA
*
84586078 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAAAACG
* * * *
84586124 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-AA--A-ACG
* * * * **
84586171 TCCGAACTTGTTGAGTTGAGTTCGATTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAAAACG
* * *
84586217 CCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
84586251 GGGGCAAGTT
Statistics
Matches: 99, Mismatches: 21, Indels: 14
0.74 0.16 0.10
Matches are distributed among these distances:
43 4 0.04
44 2 0.02
45 2 0.02
46 58 0.59
47 27 0.27
48 2 0.02
50 4 0.04
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAAAACG
Found at i:84586234 original size:93 final size:93
Alignment explanation
Indices: 84586075--84586245 Score: 252
Period size: 93 Copynumber: 1.8 Consensus size: 93
84586065 AGGATGGTTA
* *
84586075 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAAAACGCCCGAACTCGTTGAGT
*
84586140 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCAAGTTCGTGAGATGTAACTAG
* * * * ** *
84586168 GCATCCGAACTTGTTGAGTTGAGTTCGATTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAAAACGCCCGAACTCGTTGAGT
84586233 TGAGTCCAAGTTC
66 TGAGTCCAAGTTC
84586246 ACTTAGGGGC
Statistics
Matches: 68, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
93 68 1.00
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAAAACGCCCGAACTCGTTGAGT
TGAGTCCAAGTTCGTGAGATGTAACTAG
Found at i:84588629 original size:40 final size:40
Alignment explanation
Indices: 84588585--84588713 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
84588575 TGCTGGAAAT
* * *
84588585 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGAC
* *
84588625 TATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTGAC
* * *
84588665 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GTGAC
84588705 TATATCCGG
1 TATATCCGG
84588714 TTATATTCCG
Statistics
Matches: 77, Mismatches: 9, Indels: 6
0.84 0.10 0.07
Matches are distributed among these distances:
39 4 0.05
40 71 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGAC
Found at i:84592559 original size:15 final size:15
Alignment explanation
Indices: 84592537--84592571 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
84592527 TTTTGTTTCC
*
84592537 TTTATTTTT-TTATT
1 TTTATTTTTAGTATT
84592551 TTTATTTTTAGTATT
1 TTTATTTTTAGTATT
84592566 TTTATT
1 TTTATT
84592572 ATTATTTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 9 0.47
15 10 0.53
ACGTcount: A:0.17, C:0.00, G:0.03, T:0.80
Consensus pattern (15 bp):
TTTATTTTTAGTATT
Found at i:84594399 original size:24 final size:24
Alignment explanation
Indices: 84594347--84594399 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
84594337 ATGCACATAG
* *
84594347 TTTTATGTGTTTTATTTTTCTTAC
1 TTTTATGTATTTTATGTTTCTTAC
*
84594371 TTTTATGTTATTTTATGTTT-TTAT
1 TTTTATG-TATTTTATGTTTCTTAC
84594395 TTTTA
1 TTTTA
84594400 ATTTTTTTCC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 15 0.60
25 10 0.40
ACGTcount: A:0.15, C:0.04, G:0.08, T:0.74
Consensus pattern (24 bp):
TTTTATGTATTTTATGTTTCTTAC
Found at i:84603225 original size:7 final size:7
Alignment explanation
Indices: 84603213--84603240 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
84603203 CCATAGCCCT
84603213 TTTCATA
1 TTTCATA
84603220 TTTCATA
1 TTTCATA
84603227 TTTCATA
1 TTTCATA
84603234 TTTCATA
1 TTTCATA
84603241 ACACTGGGCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.29, C:0.14, G:0.00, T:0.57
Consensus pattern (7 bp):
TTTCATA
Found at i:84603265 original size:31 final size:31
Alignment explanation
Indices: 84603227--84603290 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
84603217 ATATTTCATA
84603227 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
84603258 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
84603289 TT
1 TT
84603291 ACTGTAAATG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:84603559 original size:23 final size:23
Alignment explanation
Indices: 84603505--84603622 Score: 193
Period size: 23 Copynumber: 5.1 Consensus size: 23
84603495 CCTAGCCTCT
*
84603505 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
84603528 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
84603552 TTTAATAACT-GGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
* *
84603574 ATTAATAACTGAGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
84603597 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
84603620 TTT
1 TTT
84603623 TACACTTCCT
Statistics
Matches: 88, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
22 21 0.24
23 45 0.51
24 22 0.25
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.27
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:84603590 original size:45 final size:47
Alignment explanation
Indices: 84603505--84603620 Score: 191
Period size: 45 Copynumber: 2.5 Consensus size: 47
84603495 CCTAGCCTCT
* * *
84603505 TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTATTAATAACTGAGGCATAAGCCC
84603552 TTTAATAACT-GGGCATAAGCCC-ATTAATAACTGAGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTATTAATAACTGAGGCATAAGCCC
84603597 TTTAATAACTGGGGCATAAGCCCT
1 TTTAATAACTGGGGCATAAGCCCT
84603621 TTTACACTTC
Statistics
Matches: 64, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
45 31 0.48
46 23 0.36
47 10 0.16
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.26
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTATTAATAACTGAGGCATAAGCCC
Found at i:84603698 original size:20 final size:20
Alignment explanation
Indices: 84603673--84603739 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
84603663 TTGTGATTAC
84603673 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
84603693 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
84603713 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
84603733 ACCATGT
1 ATCATGT
84603740 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:84603704 original size:11 final size:11
Alignment explanation
Indices: 84603673--84603728 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
84603663 TTGTGATTAC
84603673 ATCATGTGCAT
1 ATCATGTGCAT
*
84603684 ATCA--TACAT
1 ATCATGTGCAT
84603693 ATCATGTGCAT
1 ATCATGTGCAT
*
84603704 ATCA--TACAT
1 ATCATGTGCAT
*
84603713 GTCATGTGCAT
1 ATCATGTGCAT
84603724 ATCAT
1 ATCAT
84603729 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:84606154 original size:93 final size:93
Alignment explanation
Indices: 84605995--84606167 Score: 265
Period size: 93 Copynumber: 1.9 Consensus size: 93
84605985 AGGATGTTTG
* * ***
84605995 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTAAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAG
84606060 TTGAGTCCGAGTTCAAGAGATGTAACTA
66 TTGAGTCCGAGTTCAAGAGATGTAACTA
* * *
84606088 GGCATCCGAGCTCGTTGAGTTAAGTCTGAGTTCACTTATGGATGCGAACACCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTAAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAG
*
84606153 TTGAGTTCGAGTTCA
66 TTGAGTCCGAGTTCA
84606168 CATATGGGCG
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTAAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAG
TTGAGTCCGAGTTCAAGAGATGTAACTA
Found at i:84606168 original size:46 final size:46
Alignment explanation
Indices: 84605997--84606174 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 46
84605987 GATGTTTGGG
**
84605997 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACATATGGATGCGAA
** * * * * * *
84606043 TGTCCGAACTCGTTGAGTTGAGTCCGAGTTCAAGAGATGTA-ACTAGG
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACATATGGATGCGA-A
* * * *
84606090 CATCCGAGCTCGTTGAGTTAAGTCTGAGTTCACTTATGGATGCGAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACATATGGATGCGAA
* * *
84606136 CACCCGAGCTCGTTGAGTTGAGTTCGAGTTCACATATGG
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACATATGG
84606175 GCGGGTTACA
Statistics
Matches: 103, Mismatches: 26, Indels: 6
0.76 0.19 0.04
Matches are distributed among these distances:
46 70 0.68
47 33 0.32
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.29
Consensus pattern (46 bp):
CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACATATGGATGCGAA
Found at i:84613741 original size:35 final size:35
Alignment explanation
Indices: 84613702--84613771 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
84613692 CTTTGTTATA
84613702 TCGAGTTTAAGTTTGTTTAAATGGACGTCTTTGAT
1 TCGAGTTTAAGTTTGTTTAAATGGACGTCTTTGAT
84613737 TCGAGTTTAAGTTTGTTTAAATGGACGTCTTTGAT
1 TCGAGTTTAAGTTTGTTTAAATGGACGTCTTTGAT
84613772 AAATCGATTA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.23, C:0.09, G:0.23, T:0.46
Consensus pattern (35 bp):
TCGAGTTTAAGTTTGTTTAAATGGACGTCTTTGAT
Found at i:84614231 original size:31 final size:31
Alignment explanation
Indices: 84614193--84614256 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
84614183 CCTTTTCATA
84614193 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
84614224 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
84614255 TT
1 TT
84614257 ACTGTAAACA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:84614499 original size:24 final size:24
Alignment explanation
Indices: 84614448--84614566 Score: 163
Period size: 23 Copynumber: 5.0 Consensus size: 24
84614438 TCTTTATCAT
*
84614448 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
84614473 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
84614497 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
**
84614520 ATAACTAAGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
84614543 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
84614567 CACTTCTTCC
Statistics
Matches: 85, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
23 42 0.49
24 31 0.36
25 12 0.14
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:84614706 original size:25 final size:25
Alignment explanation
Indices: 84614678--84614725 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
84614668 ATACATAAAC
*
84614678 CCTAGGGGCAAAACGGTCATTTTTA
1 CCTAGGGGCAAAACAGTCATTTTTA
84614703 CCTAGGGGCAAAACAGTCATTTT
1 CCTAGGGGCAAAACAGTCATTTT
84614726 CATGTTATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (25 bp):
CCTAGGGGCAAAACAGTCATTTTTA
Found at i:84622433 original size:42 final size:42
Alignment explanation
Indices: 84622325--84622433 Score: 112
Period size: 43 Copynumber: 2.6 Consensus size: 42
84622315 ATACCAATTG
* * **
84622325 CATATCCCAGATATGGTCTTACATGGGATCTTGTATCGATGC
1 CATATCCCAGATATGGTCTTACACGAGATCTCATATCGATGC
** * * *
84622367 CAATAGGCTAGCTATGGTCTTACACGA-AGTCTCATATTGATGC
1 C-ATATCCCAGATATGGTCTTACACGAGA-TCTCATATCGATGC
84622410 CATATCCCAGATATGGTCTTACAC
1 CATATCCCAGATATGGTCTTACAC
84622434 ATAGTCTTAG
Statistics
Matches: 52, Mismatches: 13, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
42 21 0.40
43 31 0.60
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (42 bp):
CATATCCCAGATATGGTCTTACACGAGATCTCATATCGATGC
Found at i:84623665 original size:17 final size:17
Alignment explanation
Indices: 84623643--84623678 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
84623633 AATAAGTACA
84623643 TAGAGTTGTCGAACTTG
1 TAGAGTTGTCGAACTTG
84623660 TAGAGTTGTCGAACTTG
1 TAGAGTTGTCGAACTTG
84623677 TA
1 TA
84623679 AAATTCGAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.25, C:0.11, G:0.28, T:0.36
Consensus pattern (17 bp):
TAGAGTTGTCGAACTTG
Found at i:84629881 original size:40 final size:41
Alignment explanation
Indices: 84629803--84629992 Score: 156
Period size: 40 Copynumber: 4.8 Consensus size: 41
84629793 CGAATGATAT
* * *
84629803 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAGGTGACTATAA
1 CCGGACTAAGACCCGAAGGCATTTGTGCAAGGTGACTATAA
* * * *
84629843 CCGGACTAAGATCCGAAGGCATTCGTGCAAGTTG-CTATAT
1 CCGGACTAAGACCCGAAGGCATTTGTGCAAGGTGACTATAA
* * * * *
84629883 CCGGGCTAAGACCCGAAGGCATTTGTGCTA-GCGATTATAT
1 CCGGACTAAGACCCGAAGGCATTTGTGCAAGGTGACTATAA
* * * * * * *
84629923 CCGGGCTAAGTCCCGAAGGCATTTATGCTA-GTGACCACAT
1 CCGGACTAAGACCCGAAGGCATTTGTGCAAGGTGACTATAA
* *
84629963 CCGGGCTAAGACCCGAAGGC-CTTGTGCAAG
1 CCGGACTAAGACCCGAAGGCATTTGTGCAAG
84629993 TAGTTATATC
Statistics
Matches: 123, Mismatches: 24, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
39 7 0.06
40 106 0.86
41 10 0.08
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.23
Consensus pattern (41 bp):
CCGGACTAAGACCCGAAGGCATTTGTGCAAGGTGACTATAA
Found at i:84629932 original size:80 final size:80
Alignment explanation
Indices: 84629799--84629989 Score: 235
Period size: 80 Copynumber: 2.4 Consensus size: 80
84629789 TATTCGAATG
* *
84629799 ATATCCGGGCTAAGTCCCGAAGGCTTTGTGCTAGGTGACTATAACCGGACTAAGAT-CCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGGCGACTATAACCGGACTAAG-TCCCGAAGGC
* *
84629863 ATTCGTGCAAGTTG-CT
65 ATTCATGCAAG-TGACC
* * *
84629879 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GCGATTATATCCGGGCTAAGTCCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTAGGCGACTATAACCGGACTAAGTCCCGAAGGC
* *
84629943 ATTTATGCTAGTGACC
65 ATTCATGCAAGTGACC
* *
84629959 ACATCCGGGCTAAGACCCGAAGGCCTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCTTTGTGC
84629990 AAGTAGTTAT
Statistics
Matches: 97, Mismatches: 11, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
79 9 0.09
80 79 0.81
81 9 0.09
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGGCGACTATAACCGGACTAAGTCCCGAAGGCA
TTCATGCAAGTGACC
Done.