Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 268 of 318
Found at i:85031528 original size:27 final size:28
Alignment explanation
Indices: 85031498--85031566 Score: 83
Period size: 27 Copynumber: 2.6 Consensus size: 28
85031488 TTTAAATTAT
*
85031498 AAAAATATTTAAAAAATA-AAAAAATTC
1 AAAAATATTTAAAAAATATAAAAAAGTC
85031525 AAAAATA--TAAAAAATATAAAAAAGTC
1 AAAAATATTTAAAAAATATAAAAAAGTC
*
85031551 ATAAAA-ATTCAAAAAA
1 A-AAAATATTTAAAAAA
85031567 ATTAAAATAC
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
25 9 0.25
26 10 0.28
27 11 0.31
28 6 0.17
ACGTcount: A:0.72, C:0.04, G:0.01, T:0.22
Consensus pattern (28 bp):
AAAAATATTTAAAAAATATAAAAAAGTC
Found at i:85031554 original size:11 final size:9
Alignment explanation
Indices: 85031495--85031557 Score: 67
Period size: 9 Copynumber: 6.9 Consensus size: 9
85031485 AATTTTAAAT
85031495 TATAAAAATA
1 TATAAAAA-A
*
85031505 TTTAAAAAA
1 TATAAAAAA
85031514 TA-AAAAAA
1 TATAAAAAA
*
85031522 T-TCAAAAA
1 TATAAAAAA
85031530 TATAAAAAA
1 TATAAAAAA
85031539 TATAAAAAA
1 TATAAAAAA
85031548 GTCATAAAAA
1 -T-ATAAAAA
85031558 TTCAAAAAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
8 13 0.29
9 17 0.38
10 8 0.18
11 7 0.16
ACGTcount: A:0.71, C:0.03, G:0.02, T:0.24
Consensus pattern (9 bp):
TATAAAAAA
Found at i:85031573 original size:8 final size:8
Alignment explanation
Indices: 85031506--85031573 Score: 55
Period size: 8 Copynumber: 7.8 Consensus size: 8
85031496 ATAAAAATAT
85031506 TTAAAAAA
1 TTAAAAAA
*
85031514 TAAAAAAA
1 TTAAAAAA
*
85031522 TTCAAAAA
1 TTAAAAAA
85031530 TATAAAAAA
1 T-TAAAAAA
85031539 TATAAAAAA
1 T-TAAAAAA
*
85031548 GTCATAAAAA
1 -TTA-AAAAA
85031558 TTCAAAAAAA
1 TT--AAAAAA
85031568 TTAAAA
1 TTAAAA
85031574 TACATATGAA
Statistics
Matches: 49, Mismatches: 6, Indels: 10
0.75 0.09 0.15
Matches are distributed among these distances:
8 18 0.37
9 17 0.35
10 13 0.27
11 1 0.02
ACGTcount: A:0.72, C:0.04, G:0.01, T:0.22
Consensus pattern (8 bp):
TTAAAAAA
Found at i:85031573 original size:9 final size:9
Alignment explanation
Indices: 85031491--85031573 Score: 55
Period size: 10 Copynumber: 9.0 Consensus size: 9
85031481 AAATAATTTT
85031491 AAATTATAAA
1 AAATTA-AAA
*
85031501 AATATTTAAA
1 AA-ATTAAAA
85031511 AAA-TAAAA
1 AAATTAAAA
*
85031519 AAATT-CAA
1 AAATTAAAA
85031527 AAA-TATAAA
1 AAATTA-AAA
85031536 AAATATAAAA
1 AAAT-TAAAA
* * *
85031546 AAGTCATAA
1 AAATTAAAA
85031555 AAATTCAAAA
1 AAATT-AAAA
85031565 AAATTAAAA
1 AAATTAAAA
85031574 TACATATGAA
Statistics
Matches: 56, Mismatches: 10, Indels: 15
0.69 0.12 0.19
Matches are distributed among these distances:
7 1 0.02
8 12 0.21
9 17 0.30
10 21 0.38
11 5 0.09
ACGTcount: A:0.71, C:0.04, G:0.01, T:0.24
Consensus pattern (9 bp):
AAATTAAAA
Found at i:85033438 original size:19 final size:19
Alignment explanation
Indices: 85033414--85033479 Score: 100
Period size: 19 Copynumber: 3.6 Consensus size: 19
85033404 ATATCCTCAG
*
85033414 GATTGTATATCATATCTAA
1 GATTGCATATCATATCTAA
85033433 GATTG--TATCATATCTAA
1 GATTGCATATCATATCTAA
*
85033450 TATTGCATATCATATCTAA
1 GATTGCATATCATATCTAA
85033469 GATTGCATATC
1 GATTGCATATC
85033480 CTTAAAGATT
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
17 16 0.37
19 27 0.63
ACGTcount: A:0.35, C:0.14, G:0.11, T:0.41
Consensus pattern (19 bp):
GATTGCATATCATATCTAA
Found at i:85034327 original size:84 final size:84
Alignment explanation
Indices: 85034221--85034999 Score: 1171
Period size: 84 Copynumber: 9.3 Consensus size: 84
85034211 ATCATCTTGG
* * * * *
85034221 ACCCTACTGCTTAGGGGGTTAAGGTGCATCATCTTCGATCTGCTTCGCTACTGCTTA-GG-GATA
1 ACCCTACTGCTTAGGGGATTAAGGCG-A--GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATA
85034284 AGATCTGCAAATTTAACCTGTT
63 AGATCTGCAAATTTAACCTGTT
* * *
85034306 ACCCTACT-CTTAGGGGATTAAGGCGGGTCTTCGATTTGCTCCACTACTTCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
85034370 TCTGCAAATTTAACCTGTT
66 TCTGCAAATTTAACCTGTT
* * * * *
85034389 ACCTTACTACTTAGGGGATTAAGGCAAGTCGTCGTCGATTTGCTCCGCTACTGCTTAGGGAGATA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTC-T--TCGATCTGCTCCACTACTGCTTAGGGAGATA
**
85034454 AGATCT----A-CGAACCTGTT
63 AGATCTGCAAATTTAACCTGTT
*
85034471 ACCCTACTGCTTAGGGGATTAAGGCGATTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
85034536 TCTGCAAATTTAACCTGTT
66 TCTGCAAATTTAACCTGTT
** *
85034555 ACCCTACCACTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGAGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
*
85034620 TCTGCAAATTTAACCTGCT
66 TCTGCAAATTTAACCTGTT
* * * *
85034639 ACTCTACTGCTTAGGGAATTAAGGCAAGTCTTCGATATGCTCCACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
*
85034704 TCTACAAATTTAACCTGTT
66 TCTGCAAATTTAACCTGTT
*
85034723 ACCCTACTGCTTAGGGGATTAAGGCTG-GTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAG
1 ACCCTACTGCTTAGGGGATTAAGGC-GAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAG
85034787 ATCTGCAAATTTAACCTGTT
65 ATCTGCAAATTTAACCTGTT
*
85034807 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAAGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
85034872 TCTGCAAATTTAACCTGTT
66 TCTGCAAATTTAACCTGTT
* *
85034891 ACCCTACAGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCCCCACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
85034956 TCTGCAAATTTAACCTGTT
66 TCTGCAAATTTAACCTGTT
85034975 ACCCTACTGCTTAGGGGATTAAGGC
1 ACCCTACTGCTTAGGGGATTAAGGC
85035000 ACTGAATTTT
Statistics
Matches: 632, Mismatches: 49, Indels: 27
0.89 0.07 0.04
Matches are distributed among these distances:
79 35 0.06
81 23 0.04
82 36 0.06
83 36 0.06
84 458 0.72
85 9 0.01
87 35 0.06
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.30
Consensus pattern (84 bp):
ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
TCTGCAAATTTAACCTGTT
Found at i:85034693 original size:41 final size:41
Alignment explanation
Indices: 85034393--85034948 Score: 181
Period size: 41 Copynumber: 13.3 Consensus size: 41
85034383 CCTGTTACCT
* * * *
85034393 TACTACTTAGGGGATTAAGGCAAGTCGTCGTCGATTTGCTCCGC
1 TACTGCTTAGGGAATTAAGGCAAGTC-T--TCGATCTGCTCCAC
* * *
85034437 TACTGCTTAGGGAGA-TAA-G--A-TCTACGAACCTGTTACC-C
1 TACTGCTTAGGGA-ATTAAGGCAAGTCTTCG-ATCTGCT-CCAC
* * *
85034475 TACTGCTTAGGGGATTAAGGCGATTCTTCGATCTGCTCCAC
1 TACTGCTTAGGGAATTAAGGCAAGTCTTCGATCTGCTCCAC
* * * *
85034516 TACTGCTTAGGGAGA-TAAGATCTGCAAAT-TT-AACCTGTTACC-C
1 TACTGCTTAGGGA-ATTAAG----GCAAGTCTTCGATCTGCT-CCAC
** * *
85034559 TACCACTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCAC
1 TACTGCTTAGGGAATTAAGGCAAGTCTTCGATCTGCTCCAC
* * * * * *
85034600 TACTGCTTAGAGAGA-TAAGATCTGCAAAT-TT-AACCTGCTACTC
1 TACTGCTTAGGGA-ATTAAG----GCAAGTCTTCGATCTGCTCCAC
*
85034643 TACTGCTTAGGGAATTAAGGCAAGTCTTCGATATGCTCCAC
1 TACTGCTTAGGGAATTAAGGCAAGTCTTCGATCTGCTCCAC
* * * * *
85034684 TACTGCTTAGGGAGA-TAAGATCTACAAAT-TT-AACCTGTTACC-C
1 TACTGCTTAGGGA-ATTAAG----GCAAGTCTTCGATCTGCT-CCAC
* ** *
85034727 TACTGCTTAGGGGATTAAGGCTGGTCTTTGATCTGCTCCAC
1 TACTGCTTAGGGAATTAAGGCAAGTCTTCGATCTGCTCCAC
* * * *
85034768 TACTGCTTAGGGAGA-TAAGATCTGCAAAT-TT-AACCTGTTACC-C
1 TACTGCTTAGGGA-ATTAAG----GCAAGTCTTCGATCTGCT-CCAC
* *
85034811 TACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCAC
1 TACTGCTTAGGGAATTAAGGCAAGTCTTCGATCTGCTCCAC
* * * * *
85034852 TACTGCTTAAGGAGA-TAAGATCTGCAAAT-TT-AACCTGTTACC-C
1 TACTGCTTAGGGA-ATTAAG----GCAAGTCTTCGATCTGCT-CCAC
* * * *
85034895 TACAGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCCCCAC
1 TACTGCTTAGGGAATTAAGGCAAGTCTTCGATCTGCTCCAC
85034936 TACTGCTTAGGGA
1 TACTGCTTAGGGA
85034949 GATAAGATCT
Statistics
Matches: 369, Mismatches: 86, Indels: 117
0.65 0.15 0.20
Matches are distributed among these distances:
37 3 0.01
38 20 0.05
39 23 0.06
40 22 0.06
41 126 0.34
42 15 0.04
43 108 0.29
44 32 0.09
45 20 0.05
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (41 bp):
TACTGCTTAGGGAATTAAGGCAAGTCTTCGATCTGCTCCAC
Found at i:85035963 original size:7 final size:7
Alignment explanation
Indices: 85035951--85036000 Score: 50
Period size: 7 Copynumber: 6.9 Consensus size: 7
85035941 GCCTCTCCAT
85035951 TTTTTTC
1 TTTTTTC
85035958 TTTTTTC
1 TTTTTTC
85035965 TTTTTT-
1 TTTTTTC
85035971 TTCTCTTT-
1 TT-T-TTTC
85035979 TTCTTTTC
1 TT-TTTTC
85035987 TTTTTTCC
1 TTTTTT-C
85035995 TTTTTT
1 TTTTTT
85036001 TTTGAAATAG
Statistics
Matches: 39, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
6 2 0.05
7 21 0.54
8 16 0.41
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (7 bp):
TTTTTTC
Found at i:85035977 original size:11 final size:10
Alignment explanation
Indices: 85035958--85035992 Score: 52
Period size: 11 Copynumber: 3.3 Consensus size: 10
85035948 CATTTTTTTC
85035958 TTTTTTCTTT
1 TTTTTTCTTT
85035968 TTTTTCTCTTT
1 TTTTT-TCTTT
85035979 TTCTTTTCTTT
1 TT-TTTTCTTT
85035990 TTT
1 TTT
85035993 CCTTTTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
10 6 0.26
11 14 0.61
12 3 0.13
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (10 bp):
TTTTTTCTTT
Found at i:85037824 original size:22 final size:24
Alignment explanation
Indices: 85037778--85037824 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
85037768 ATATCATAAA
*
85037778 ATAGCATATAAAAAAATAATTAAAC
1 ATAGCATAT-AAAAAATAATGAAAC
85037803 ATAGCATAT-AAAAA-AATGAAAC
1 ATAGCATATAAAAAATAATGAAAC
85037825 TATGCACAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 7 0.33
23 5 0.24
25 9 0.43
ACGTcount: A:0.64, C:0.09, G:0.06, T:0.21
Consensus pattern (24 bp):
ATAGCATATAAAAAATAATGAAAC
Found at i:85038343 original size:22 final size:21
Alignment explanation
Indices: 85038318--85038358 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
85038308 TTAAATCTCT
85038318 AAGATTACAAGATCATATCTTC
1 AAGATTAC-AGATCATATCTTC
* *
85038340 AAGATTGCATATCATATCT
1 AAGATTACAGATCATATCT
85038359 AAGATTGTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.39, C:0.17, G:0.10, T:0.34
Consensus pattern (21 bp):
AAGATTACAGATCATATCTTC
Found at i:85038360 original size:41 final size:36
Alignment explanation
Indices: 85038329--85038401 Score: 110
Period size: 36 Copynumber: 2.0 Consensus size: 36
85038319 AGATTACAAG
*
85038329 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGT
1 ATCATATC-T-AAGAGTGCATATCATATCTAAGATTGT
*
85038367 ATCATATCTAATAGTGCATATCATATCTAAGATTG
1 ATCATATCTAAGAGTGCATATCATATCTAAGATTG
85038402 CATATCCTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
36 24 0.73
37 1 0.03
38 8 0.24
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (36 bp):
ATCATATCTAAGAGTGCATATCATATCTAAGATTGT
Found at i:85038364 original size:19 final size:19
Alignment explanation
Indices: 85038315--85038407 Score: 109
Period size: 19 Copynumber: 4.8 Consensus size: 19
85038305 AAATTAAATC
* *
85038315 TCTAAGATTACAAGATCATA
1 TCTAAGATTGC-ATATCATA
85038335 TCTTCAAGATTGCATATCATA
1 TC-T-AAGATTGCATATCATA
85038356 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
* *
85038373 TCTAATAGTGCATATCATA
1 TCTAAGATTGCATATCATA
85038392 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
85038408 CTTAAAGATT
Statistics
Matches: 63, Mismatches: 6, Indels: 9
0.81 0.08 0.12
Matches are distributed among these distances:
17 15 0.24
19 28 0.44
20 3 0.05
21 10 0.16
22 7 0.11
ACGTcount: A:0.37, C:0.16, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:85040714 original size:2 final size:2
Alignment explanation
Indices: 85040665--85040698 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
85040655 TTTCTTAATA
85040665 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
85040699 GCATTTGTGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:85041134 original size:9 final size:8
Alignment explanation
Indices: 85041119--85041205 Score: 57
Period size: 8 Copynumber: 10.0 Consensus size: 8
85041109 AATAATTTTC
85041119 AAAATTTA
1 AAAATTTA
85041127 AAATATTTATA
1 AAA-A-TT-TA
*
85041138 AAAATTTC
1 AAAATTTA
85041146 AAAATTTA
1 AAAATTTA
* **
85041154 TATTTTTAA
1 AAAATTT-A
85041163 AAAATTTA
1 AAAATTTA
85041171 AAAATTCTAA
1 AAAATT-T-A
*
85041181 AAAATATA
1 AAAATTTA
85041189 TAAAATTTA
1 -AAAATTTA
*
85041198 AAATTTTA
1 AAAATTTA
85041206 GAATTAATCT
Statistics
Matches: 61, Mismatches: 11, Indels: 14
0.71 0.13 0.16
Matches are distributed among these distances:
8 30 0.49
9 17 0.28
10 9 0.15
11 5 0.08
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.41
Consensus pattern (8 bp):
AAAATTTA
Found at i:85041205 original size:44 final size:44
Alignment explanation
Indices: 85041119--85041205 Score: 108
Period size: 44 Copynumber: 2.0 Consensus size: 44
85041109 AATAATTTTC
* *
85041119 AAAATTTAAAATATTTATAAAAATTTCAAAATTTATATTTTTAA
1 AAAATTTAAAATATTTATAAAAATTTCAAAATTTAAAATTTTAA
85041163 AAAATTTAAAA-ATTCTA-AAAAATATAT-AAAATTTAAAATTTTA
1 AAAATTTAAAATATT-TATAAAAAT-T-TCAAAATTTAAAATTTTA
85041206 GAATTAATCT
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
43 9 0.24
44 28 0.74
45 1 0.03
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.41
Consensus pattern (44 bp):
AAAATTTAAAATATTTATAAAAATTTCAAAATTTAAAATTTTAA
Found at i:85043614 original size:18 final size:20
Alignment explanation
Indices: 85043578--85043624 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
85043568 AGTTGTAAGT
85043578 ATATATATGTGAATAATTTG
1 ATATATATGTGAATAATTTG
* *
85043598 ATAT-TATGTGATTATTTTG
1 ATATATATGTGAATAATTTG
85043617 ATGATATA
1 AT-ATATA
85043625 ACCTGTTCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.49
Consensus pattern (20 bp):
ATATATATGTGAATAATTTG
Found at i:85045317 original size:20 final size:19
Alignment explanation
Indices: 85045280--85045373 Score: 54
Period size: 20 Copynumber: 4.9 Consensus size: 19
85045270 ATATATTTGG
85045280 TAATAATA--ACAT-AAAA
1 TAATAATATTACATAAAAA
85045296 TAATAATATGTACATAAAAA
1 TAATAATAT-TACATAAAAA
* ** *
85045316 TACAT-ATATATATATGCATA
1 TA-ATAATAT-TACATAAAAA
* *
85045336 TAATAATA-TATATAATAA
1 TAATAATATTACATAAAAA
85045354 TAATAATATCTACAATAAAA
1 TAATAATAT-TAC-ATAAAA
85045374 GAAAATATTA
Statistics
Matches: 58, Mismatches: 11, Indels: 13
0.71 0.13 0.16
Matches are distributed among these distances:
16 8 0.14
18 14 0.24
19 6 0.10
20 23 0.40
21 7 0.12
ACGTcount: A:0.59, C:0.06, G:0.02, T:0.33
Consensus pattern (19 bp):
TAATAATATTACATAAAAA
Found at i:85045346 original size:18 final size:18
Alignment explanation
Indices: 85045280--85045362 Score: 66
Period size: 18 Copynumber: 4.7 Consensus size: 18
85045270 ATATATTTGG
*
85045280 TAATAATAACATA-A-AA
1 TAATAATAATATATATAA
* *
85045296 TAATAAT-ATGTACATAA
1 TAATAATAATATATATAA
* *
85045313 AAATACATATATATATATGCA
1 TAATA-ATA-ATATATAT-AA
85045334 T-ATAATAATATATATAA
1 TAATAATAATATATATAA
85045351 TAATAATAATAT
1 TAATAATAATAT
85045363 CTACAATAAA
Statistics
Matches: 52, Mismatches: 8, Indels: 12
0.72 0.11 0.17
Matches are distributed among these distances:
15 3 0.06
16 8 0.15
17 8 0.15
18 20 0.38
19 3 0.06
20 9 0.17
21 1 0.02
ACGTcount: A:0.58, C:0.05, G:0.02, T:0.35
Consensus pattern (18 bp):
TAATAATAATATATATAA
Found at i:85045370 original size:18 final size:18
Alignment explanation
Indices: 85045294--85045371 Score: 59
Period size: 18 Copynumber: 4.1 Consensus size: 18
85045284 AATAACATAA
*
85045294 AATAATAATATGTAC-AT
1 AATAATAATATATACAAT
* *
85045311 AAAAATACATATATATATAT
1 AATAATA-ATATATACA-AT
*
85045331 GCATATAATAATATATATAAT
1 --A-ATAATAATATATACAAT
*
85045352 AATAATAATATCTACAAT
1 AATAATAATATATACAAT
85045370 AA
1 AA
85045372 AAGAAAATAT
Statistics
Matches: 49, Mismatches: 6, Indels: 11
0.74 0.09 0.17
Matches are distributed among these distances:
17 6 0.12
18 23 0.47
19 1 0.02
20 2 0.04
21 2 0.04
22 10 0.20
23 5 0.10
ACGTcount: A:0.56, C:0.06, G:0.03, T:0.35
Consensus pattern (18 bp):
AATAATAATATATACAAT
Found at i:85045454 original size:17 final size:17
Alignment explanation
Indices: 85045432--85045492 Score: 60
Period size: 17 Copynumber: 3.8 Consensus size: 17
85045422 ACAATAATAT
85045432 AAAATA-ATGATATGTAC
1 AAAATATAT-ATATGTAC
85045449 AAAATATATATATGTAC
1 AAAATATATATATGTAC
*
85045466 ATAATATAGT-TA--TA-
1 AAAATATA-TATATGTAC
85045480 AAAATATATATAT
1 AAAATATATATAT
85045493 TAAATTCGGA
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
13 1 0.03
14 9 0.24
15 2 0.05
17 23 0.61
18 3 0.08
ACGTcount: A:0.54, C:0.03, G:0.07, T:0.36
Consensus pattern (17 bp):
AAAATATATATATGTAC
Found at i:85045836 original size:35 final size:37
Alignment explanation
Indices: 85045767--85045837 Score: 119
Period size: 35 Copynumber: 2.0 Consensus size: 37
85045757 AAATTACTTC
*
85045767 AATCCAACACAAACCAACCTCAGCCCACTAACTTAAT
1 AATCCAACACAAACCAACCTCAACCCACTAACTTAAT
85045804 AATCCAACAC-AACCAACC-CAACCCACTAACTTAA
1 AATCCAACACAAACCAACCTCAACCCACTAACTTAA
85045838 CATATCACCC
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
35 15 0.45
36 8 0.24
37 10 0.30
ACGTcount: A:0.45, C:0.39, G:0.01, T:0.14
Consensus pattern (37 bp):
AATCCAACACAAACCAACCTCAACCCACTAACTTAAT
Found at i:85046270 original size:16 final size:14
Alignment explanation
Indices: 85046251--85046287 Score: 56
Period size: 14 Copynumber: 2.5 Consensus size: 14
85046241 TTTGTTGTTT
85046251 TTTTTTTGCTAGAAAA
1 TTTTTTTGCT-G-AAA
85046267 TTTTTTTGCTGAAA
1 TTTTTTTGCTGAAA
85046281 TTTTTTT
1 TTTTTTT
85046288 TTTGCTCTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 10 0.48
15 1 0.05
16 10 0.48
ACGTcount: A:0.22, C:0.05, G:0.11, T:0.62
Consensus pattern (14 bp):
TTTTTTTGCTGAAA
Found at i:85046288 original size:15 final size:16
Alignment explanation
Indices: 85046250--85046288 Score: 62
Period size: 15 Copynumber: 2.5 Consensus size: 16
85046240 TTTTGTTGTT
85046250 TTTTTTTTGCTAGAAA
1 TTTTTTTTGCTAGAAA
*
85046266 ATTTTTTTGCT-GAAA
1 TTTTTTTTGCTAGAAA
85046281 TTTTTTTT
1 TTTTTTTT
85046289 TTGCTCTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 11 0.52
16 10 0.48
ACGTcount: A:0.21, C:0.05, G:0.10, T:0.64
Consensus pattern (16 bp):
TTTTTTTTGCTAGAAA
Found at i:85046288 original size:16 final size:17
Alignment explanation
Indices: 85046249--85046289 Score: 59
Period size: 16 Copynumber: 2.5 Consensus size: 17
85046239 TTTTTGTTGT
85046249 TTTTTTTTTGCTAGAAA
1 TTTTTTTTTGCTAGAAA
*
85046266 -ATTTTTTTGCT-GAAA
1 TTTTTTTTTGCTAGAAA
85046281 TTTTTTTTT
1 TTTTTTTTT
85046290 TGCTCTTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
15 4 0.19
16 17 0.81
ACGTcount: A:0.20, C:0.05, G:0.10, T:0.66
Consensus pattern (17 bp):
TTTTTTTTTGCTAGAAA
Found at i:85046631 original size:29 final size:29
Alignment explanation
Indices: 85046516--85046624 Score: 130
Period size: 30 Copynumber: 3.7 Consensus size: 29
85046506 TGTAATTTTT
* *
85046516 AGAAAA-TTTAGGGTTAAAATGCAATTTA
1 AGAAAAGTTTAGGGGTAAAATGAAATTTA
* * *
85046544 AGGAAAGTTTAGGGGTTTAAGTGAAATTTA
1 AGAAAAGTTTAGGGG-TAAAATGAAATTTA
* *
85046574 AAAAAAGTTTAAGGGTCAAAATGAAATTTA
1 AGAAAAGTTTAGGGGT-AAAATGAAATTTA
85046604 AGAAAAGTTTAGGGGTAAAAT
1 AGAAAAGTTTAGGGGTAAAAT
85046625 ATAATTTTTA
Statistics
Matches: 66, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
28 5 0.08
29 13 0.20
30 48 0.73
ACGTcount: A:0.46, C:0.02, G:0.23, T:0.29
Consensus pattern (29 bp):
AGAAAAGTTTAGGGGTAAAATGAAATTTA
Found at i:85046656 original size:24 final size:24
Alignment explanation
Indices: 85046628--85046673 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
85046618 GTAAAATATA
85046628 ATTTTTATTTTTTGAAAATTTTTT
1 ATTTTTATTTTTTGAAAATTTTTT
*
85046652 ATTTTTATTTTTTTAAAATTTT
1 ATTTTTATTTTTTGAAAATTTT
85046674 GAAAATTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.72
Consensus pattern (24 bp):
ATTTTTATTTTTTGAAAATTTTTT
Found at i:85046958 original size:76 final size:75
Alignment explanation
Indices: 85046862--85047140 Score: 300
Period size: 75 Copynumber: 3.7 Consensus size: 75
85046852 CCCGAAGTTC
*
85046862 AACTCACCTCTCG-AATTATGAGTTGA-TCTTTTGAAAAAGCAAAAAATTGAAAATACCTCAGCG
1 AACTCACCTCTCGCAA-TATGAGTTGATTTTTTTGAAAAA-C-AAAAATTGAAAATACCTCAGCG
*
85046925 TGACCTGAGGCTT
63 TGTCCTGAGGCTT
* * **
85046938 AACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAATGTGT
1 AACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAAAAATTGAAAATACCTCAGCGTGT
* *
85047003 CTTGAGGCTC
66 CCTGAGGCTT
** * *
85047013 AACTCATTTCTCGCAATATGAGTTGACTTTTTTTTTTAAAAA-AAAGGAATTGAAATTACCTCAG
1 AACTCACCTCTCGCAATATGAGTTGA---TTTTTTTGAAAAACAAA--AATTGAAAATACCTCAG
*
85047077 CGTGTCCCGAGGC-T
61 CGTGTCCTGAGGCTT
* * *
85047091 AACTCACCTCTCGTAATATGAATTGA--TTTTTGAAAAACATAAATTGAAAA
1 AACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAAAAATTGAAAA
85047141 ACGGAAATCG
Statistics
Matches: 169, Mismatches: 26, Indels: 20
0.79 0.12 0.09
Matches are distributed among these distances:
72 8 0.05
73 10 0.06
74 2 0.01
75 53 0.31
76 24 0.14
77 14 0.08
78 33 0.20
79 25 0.15
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.32
Consensus pattern (75 bp):
AACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAAAAATTGAAAATACCTCAGCGTGT
CCTGAGGCTT
Found at i:85047404 original size:14 final size:14
Alignment explanation
Indices: 85047382--85047411 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
85047372 TGATTTTTGC
*
85047382 AAAATATAAATTGA
1 AAAACATAAATTGA
85047396 AAAACATAAATTGA
1 AAAACATAAATTGA
85047410 AA
1 AA
85047412 TTACCTCAGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.67, C:0.03, G:0.07, T:0.23
Consensus pattern (14 bp):
AAAACATAAATTGA
Found at i:85059732 original size:17 final size:17
Alignment explanation
Indices: 85059710--85059770 Score: 60
Period size: 17 Copynumber: 3.8 Consensus size: 17
85059700 ACAATAATAT
85059710 AAAATA-ATGATATGTAC
1 AAAATATAT-ATATGTAC
85059727 AAAATATATATATGTAC
1 AAAATATATATATGTAC
*
85059744 ATAATATAGT-TA--TA-
1 AAAATATA-TATATGTAC
85059758 AAAATATATATAT
1 AAAATATATATAT
85059771 TAAATTCGGA
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
13 1 0.03
14 9 0.24
15 2 0.05
17 23 0.61
18 3 0.08
ACGTcount: A:0.54, C:0.03, G:0.07, T:0.36
Consensus pattern (17 bp):
AAAATATATATATGTAC
Found at i:85060565 original size:16 final size:17
Alignment explanation
Indices: 85060527--85060567 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
85060517 TTTTTTGTTG
85060527 TTTTTTTTTTGCTGGAA
1 TTTTTTTTTTGCTGGAA
**
85060544 -AATTTTTTTGCT-GAA
1 TTTTTTTTTTGCTGGAA
85060559 TTTTTTTTT
1 TTTTTTTTT
85060568 CTCTTTTTTC
Statistics
Matches: 19, Mismatches: 4, Indels: 3
0.73 0.15 0.12
Matches are distributed among these distances:
15 3 0.16
16 16 0.84
ACGTcount: A:0.15, C:0.05, G:0.12, T:0.68
Consensus pattern (17 bp):
TTTTTTTTTTGCTGGAA
Found at i:85060850 original size:30 final size:30
Alignment explanation
Indices: 85060814--85060900 Score: 104
Period size: 30 Copynumber: 2.9 Consensus size: 30
85060804 GTTAAAATAC
** *
85060814 AATTTAAGGAAAGTTTAGGGGTCTCAGTGA
1 AATTTAAGGAAAGTTTAGGGGTCAAAATGA
* *
85060844 AATTTAAAGAAAGTTTAAGGGTCAAAATGA
1 AATTTAAGGAAAGTTTAGGGGTCAAAATGA
*
85060874 AATTT-AGGAAAAGTTTAGGGGTAAAAA
1 AATTTAAGG-AAAGTTTAGGGGTCAAAA
85060901 ATCAATTTTT
Statistics
Matches: 48, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
29 2 0.04
30 46 0.96
ACGTcount: A:0.44, C:0.03, G:0.25, T:0.28
Consensus pattern (30 bp):
AATTTAAGGAAAGTTTAGGGGTCAAAATGA
Found at i:85060937 original size:24 final size:24
Alignment explanation
Indices: 85060905--85060950 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
85060895 TAAAAAATCA
*
85060905 ATTTTTATTTTTTGAAATTTTTTT
1 ATTTTTATTTTTTGAAAATTTTTT
*
85060929 ATTTTTATTTTTTTAAAATTTT
1 ATTTTTATTTTTTGAAAATTTT
85060951 GAAAATTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.74
Consensus pattern (24 bp):
ATTTTTATTTTTTGAAAATTTTTT
Found at i:85065105 original size:18 final size:19
Alignment explanation
Indices: 85065067--85065105 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
85065057 TGGTTCAAGG
*
85065067 TTTCAATCTCATATCTCAA
1 TTTCAATCTCACATCTCAA
*
85065086 TTTCAAT-TCACATTTCAA
1 TTTCAATCTCACATCTCAA
85065104 TT
1 TT
85065106 CTTAATTTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.31, C:0.23, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCACATCTCAA
Found at i:85065648 original size:26 final size:26
Alignment explanation
Indices: 85065609--85065716 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
85065599 TGGTACAAAT
85065609 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
85065635 TGATAATGGATTAGGTATATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
85065661 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
85065687 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
85065713 TGAT
1 TGAT
85065717 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.31, C:0.07, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:85067189 original size:28 final size:26
Alignment explanation
Indices: 85067158--85067217 Score: 66
Period size: 28 Copynumber: 2.2 Consensus size: 26
85067148 AAAAGTAGCT
*
85067158 AAATTACTATAATACCCCTATGTATGGA
1 AAATTACTATAATACCCCTA-G-ATGCA
* * *
85067186 AAATTATTGTTATACCCCTAGATGCA
1 AAATTACTATAATACCCCTAGATGCA
85067212 AAATTA
1 AAATTA
85067218 TCGTTATACC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 10 0.36
27 1 0.04
28 17 0.61
ACGTcount: A:0.40, C:0.17, G:0.10, T:0.33
Consensus pattern (26 bp):
AAATTACTATAATACCCCTAGATGCA
Found at i:85067223 original size:26 final size:27
Alignment explanation
Indices: 85067169--85067232 Score: 94
Period size: 26 Copynumber: 2.4 Consensus size: 27
85067159 AATTACTATA
* *
85067169 ATACCCCTATGTATGGAAAATTATTGTT
1 ATACCCCTA-GTATGCAAAATTATCGTT
85067197 ATACCCCTAG-ATGCAAAATTATCGTT
1 ATACCCCTAGTATGCAAAATTATCGTT
85067223 ATACCCCTAG
1 ATACCCCTAG
85067233 GGTTAATTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
26 24 0.71
27 1 0.03
28 9 0.26
ACGTcount: A:0.33, C:0.22, G:0.12, T:0.33
Consensus pattern (27 bp):
ATACCCCTAGTATGCAAAATTATCGTT
Found at i:85067377 original size:27 final size:26
Alignment explanation
Indices: 85067337--85067477 Score: 174
Period size: 27 Copynumber: 5.2 Consensus size: 26
85067327 AGGAAGCGTC
85067337 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTATGCCAC-ATTATCTGAT
* *
85067364 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAT-TATCTGAT
85067391 CTGGTGGCTATGCCACGATTATCTGAT
1 CTGGTGGCTATGCCAC-ATTATCTGAT
* * *
85067418 CCGGTGGCTTTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAT-TATCTGAT
* *
85067445 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTATGCCACATTATCTG-AT
85067472 CTGGTG
1 CTGGTG
85067478 ACTTCGTCAC
Statistics
Matches: 99, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
26 10 0.10
27 87 0.88
28 2 0.02
ACGTcount: A:0.17, C:0.24, G:0.24, T:0.35
Consensus pattern (26 bp):
CTGGTGGCTATGCCACATTATCTGAT
Found at i:85067424 original size:54 final size:53
Alignment explanation
Indices: 85067337--85067477 Score: 219
Period size: 54 Copynumber: 2.6 Consensus size: 53
85067327 AGGAAGCGTC
85067337 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* *
85067391 CTGGTGGCTATGCCACGATTATCTGATCCGGTGGCTTTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* *
85067445 CTGGTGGCTCTGCCACAATATCTGTATCTGGTG
1 CTGGTGGCTATGCCACATTATCTG-ATCTGGTG
85067478 ACTTCGTCAC
Statistics
Matches: 80, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
53 7 0.09
54 73 0.91
ACGTcount: A:0.17, C:0.24, G:0.24, T:0.35
Consensus pattern (53 bp):
CTGGTGGCTATGCCACATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:85067488 original size:27 final size:27
Alignment explanation
Indices: 85067337--85067495 Score: 145
Period size: 27 Copynumber: 5.9 Consensus size: 27
85067327 AGGAAGCGTC
85067337 CTGGTGGCTAT-GCCACAATTATCTG-AT
1 CTGGTGGCT-TCGCCACAA-TATCTGTAT
85067364 CTGGTGGC-TCTGCCACATATATCTGT-T
1 CTGGTGGCTTC-GCCACA-ATATCTGTAT
*
85067391 CTGGTGGCTAT-GCCACGATTATCTG-AT
1 CTGGTGGCT-TCGCCAC-AATATCTGTAT
* *
85067418 CCGGTGGCTTTGCCACATATATCTGT-T
1 CTGGTGGCTTCGCCACA-ATATCTGTAT
85067445 CTGGTGGC-TCTGCCACAATATCTGTAT
1 CTGGTGGCTTC-GCCACAATATCTGTAT
* *
85067472 CTGGTGACTTCGTCACAATATCTG
1 CTGGTGGCTTCGCCACAATATCTG
85067496 GCAGCCTCAC
Statistics
Matches: 111, Mismatches: 7, Indels: 28
0.76 0.05 0.19
Matches are distributed among these distances:
25 1 0.01
26 11 0.10
27 94 0.85
28 4 0.04
29 1 0.01
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTTCGCCACAATATCTGTAT
Found at i:85068624 original size:45 final size:45
Alignment explanation
Indices: 85068552--85068779 Score: 287
Period size: 45 Copynumber: 5.1 Consensus size: 45
85068542 AATAATAATG
* * *
85068552 GTAACAGTATTCAACACACAAAGTGCCGAATCGGTAACGGTAACA
1 GTAACAATATTCGACACACAAAGTGCCGAATCAGTAACGGTAACA
* *
85068597 GTAACAATATTCGACACATAAAATGCCGAATCAGTAACGGTAACA
1 GTAACAATATTCGACACACAAAGTGCCGAATCAGTAACGGTAACA
* * *
85068642 GTAATAATATTCGACACACAAAGTGCCAAATCAGTAACAGTAACA
1 GTAACAATATTCGACACACAAAGTGCCGAATCAGTAACGGTAACA
* * * * *
85068687 GTAACAATATTTGACACATAAAGTGTCGAATCAATAACGTTAACA
1 GTAACAATATTCGACACACAAAGTGCCGAATCAGTAACGGTAACA
* * * *
85068732 GTAACAATAATT-GACACACAAAGTGCCAAATCGGTAACAGTAGCA
1 GTAACAAT-ATTCGACACACAAAGTGCCGAATCAGTAACGGTAACA
85068777 GTA
1 GTA
85068780 GCAGTAACAG
Statistics
Matches: 156, Mismatches: 26, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
45 153 0.98
46 3 0.02
ACGTcount: A:0.44, C:0.19, G:0.16, T:0.21
Consensus pattern (45 bp):
GTAACAATATTCGACACACAAAGTGCCGAATCAGTAACGGTAACA
Found at i:85068653 original size:90 final size:90
Alignment explanation
Indices: 85068552--85068779 Score: 332
Period size: 90 Copynumber: 2.5 Consensus size: 90
85068542 AATAATAATG
* * * *
85068552 GTAACAGTATTCAACACACAAAGTGCCGAATCGGTAACGGTAACAGTAACAATATTCGACACATA
1 GTAACAATATTCGACACACAAAGTGCCAAATCGGTAACAGTAACAGTAACAATATTCGACACATA
*
85068617 AAATGCCGAATCAGTAACGGTAACA
66 AAATGCCGAATCAATAACGGTAACA
* * *
85068642 GTAATAATATTCGACACACAAAGTGCCAAATCAGTAACAGTAACAGTAACAATATTTGACACATA
1 GTAACAATATTCGACACACAAAGTGCCAAATCGGTAACAGTAACAGTAACAATATTCGACACATA
* * *
85068707 AAGTGTCGAATCAATAACGTTAACA
66 AAATGCCGAATCAATAACGGTAACA
*
85068732 GTAACAATAATT-GACACACAAAGTGCCAAATCGGTAACAGTAGCAGTA
1 GTAACAAT-ATTCGACACACAAAGTGCCAAATCGGTAACAGTAACAGTA
85068780 GCAGTAACAG
Statistics
Matches: 123, Mismatches: 14, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
90 120 0.98
91 3 0.02
ACGTcount: A:0.44, C:0.19, G:0.16, T:0.21
Consensus pattern (90 bp):
GTAACAATATTCGACACACAAAGTGCCAAATCGGTAACAGTAACAGTAACAATATTCGACACATA
AAATGCCGAATCAATAACGGTAACA
Found at i:85069202 original size:10 final size:10
Alignment explanation
Indices: 85069188--85069222 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
85069178 AATTAATCAT
85069188 AATTCCATTC
1 AATTCCATTC
*
85069198 CATTCCATTC
1 AATTCCATTC
*
85069208 AATTCAATTC
1 AATTCCATTC
85069218 AATTC
1 AATTC
85069223 AAATTCACTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.31, C:0.29, G:0.00, T:0.40
Consensus pattern (10 bp):
AATTCCATTC
Found at i:85071281 original size:21 final size:22
Alignment explanation
Indices: 85071257--85071423 Score: 75
Period size: 21 Copynumber: 7.5 Consensus size: 22
85071247 AAGTAGTACA
85071257 TATTATTT-TTATTATCTA-ATT
1 TATTATTTATT-TTATCTATATT
* *
85071278 TATTA-TTGTTTTAT-TATATA
1 TATTATTTATTTTATCTATATT
85071298 TATTATTTATTTTA-CTATATT
1 TATTATTTATTTTATCTATATT
*
85071319 TATCTATTATATTATTAT-TATACAT
1 TAT-TATT-TATT-TTATCTATA-TT
**
85071344 T-TTA-AAATTTTCATCATATATTT
1 TATTATTTATTTT-ATC-TATA-TT
*
85071367 TATTATATATATATTTATTTATATT
1 TATTAT-T-TAT-TTTATCTATATT
* *
85071392 TA-TATTATATTTT-TTTAGTATA
1 TATTATT-TATTTTATCTA-TATT
85071414 TATTATTTAT
1 TATTATTTAT
85071424 ATATATTATT
Statistics
Matches: 115, Mismatches: 12, Indels: 37
0.70 0.07 0.23
Matches are distributed among these distances:
19 2 0.02
20 15 0.13
21 31 0.27
22 15 0.13
23 21 0.18
24 14 0.12
25 6 0.05
26 4 0.03
27 4 0.03
28 3 0.03
ACGTcount: A:0.32, C:0.04, G:0.01, T:0.63
Consensus pattern (22 bp):
TATTATTTATTTTATCTATATT
Found at i:85071316 original size:17 final size:16
Alignment explanation
Indices: 85071287--85071441 Score: 74
Period size: 16 Copynumber: 9.6 Consensus size: 16
85071277 TTATTATTGT
85071287 TTTATTATATATATTA
1 TTTATTATATATATTA
*
85071303 TTTATTTTACTATATTTA
1 TTTATTATA-TATA-TTA
*
85071321 TCTATTATAT-TATTA
1 TTTATTATATATATTA
* *
85071336 TTATACATTTTA-AAATT-
1 TT-T--ATTATATATATTA
* * *
85071353 TTCATCATATATTTTA
1 TTTATTATATATATTA
85071369 -TTA-TATATATATTTA
1 TTTATTATATATA-TTA
*
85071384 TTTA-TATTTATATTA
1 TTTATTATATATATTA
* *
85071399 TATTTTTTTAGTATA-TA
1 T-TTATTATA-TATATTA
85071416 -TTATTTATATATATTA
1 TTTA-TTATATATATTA
*
85071432 TTAATTATAT
1 TTTATTATAT
85071442 TGTTCATACT
Statistics
Matches: 102, Mismatches: 21, Indels: 32
0.66 0.14 0.21
Matches are distributed among these distances:
14 10 0.10
15 22 0.22
16 35 0.34
17 13 0.13
18 22 0.22
ACGTcount: A:0.35, C:0.03, G:0.01, T:0.61
Consensus pattern (16 bp):
TTTATTATATATATTA
Found at i:85071337 original size:45 final size:44
Alignment explanation
Indices: 85071256--85071441 Score: 107
Period size: 41 Copynumber: 4.0 Consensus size: 44
85071246 AAAGTAGTAC
*
85071256 ATATTATTT-TTATTATCTA-ATTTATTA-T-TGTT-TTATTATAT
1 ATATTATTTATT-TTA-CTATATTTATTATTATATTATTATTATAT
*
85071297 ATATTATTTATTTTACTATATTTATCTATTATATTATTATTATAC
1 ATATTATTTATTTTACTATATTTAT-TATTATATTATTATTATAT
* **
85071342 ATTTTA-AAATTTTCATCATATATTTTATTA-TATATATATTTATTTATATTT
1 ATATTATTTATTTT-A-C-TATA-TTTATTATTATAT-TA-TTA-TTATA--T
* *
85071393 ATATTATATTTTTTTAGTATATATTATTTATATATATTATTAATTATAT
1 ATATTAT-TTATTTTACTATAT-TTA-TTAT-TATATTATT-ATTATAT
85071442 TGTTCATACT
Statistics
Matches: 112, Mismatches: 11, Indels: 36
0.70 0.07 0.23
Matches are distributed among these distances:
40 3 0.03
41 18 0.16
42 4 0.04
43 1 0.01
44 8 0.07
45 14 0.12
46 6 0.05
47 8 0.07
48 8 0.07
49 7 0.06
50 7 0.06
51 15 0.13
52 4 0.04
53 9 0.08
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.62
Consensus pattern (44 bp):
ATATTATTTATTTTACTATATTTATTATTATATTATTATTATAT
Found at i:85075434 original size:17 final size:17
Alignment explanation
Indices: 85075375--85075434 Score: 54
Period size: 17 Copynumber: 3.5 Consensus size: 17
85075365 TAATAAATTT
85075375 AAAATATAA-TATATAA
1 AAAATATAATTATATAA
*
85075391 CAAAAAATATATT-TAT-A
1 -AAAATATA-ATTATATAA
*
85075408 AGAATAATAATTATATAA
1 AAAAT-ATAATTATATAA
85075426 AAAATATAA
1 AAAATATAA
85075435 AATATATTGG
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
16 6 0.18
17 18 0.53
18 9 0.26
19 1 0.03
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.32
Consensus pattern (17 bp):
AAAATATAATTATATAA
Found at i:85075942 original size:19 final size:19
Alignment explanation
Indices: 85075918--85076008 Score: 143
Period size: 19 Copynumber: 4.9 Consensus size: 19
85075908 AATCATATCT
*
85075918 TCTAAGATTGTATATCATA
1 TCTAAGATTGCATATCATA
85075937 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
85075955 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
*
85075972 TCTAAGATTGCATATCACA
1 TCTAAGATTGCATATCATA
85075991 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
85076009 TGAAGATTAT
Statistics
Matches: 66, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
17 16 0.24
18 16 0.24
19 34 0.52
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:85075976 original size:35 final size:37
Alignment explanation
Indices: 85075918--85076008 Score: 141
Period size: 35 Copynumber: 2.5 Consensus size: 37
85075908 AATCATATCT
*
85075918 TCTAAGATTGTATATCATATCTAAGATTGCA-ATCATA
1 TCTAAGATTG-ATATCATATCTAAGATTGCATATCACA
85075955 TCTAAGATTG-TATCATATCTAAGATTGCATATCACA
1 TCTAAGATTGATATCATATCTAAGATTGCATATCACA
85075991 TCTAAGATTGCATATCAT
1 TCTAAGATTG-ATATCAT
85076009 TGAAGATTAT
Statistics
Matches: 50, Mismatches: 1, Indels: 5
0.89 0.02 0.09
Matches are distributed among these distances:
35 19 0.38
36 15 0.30
37 10 0.20
38 6 0.12
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.37
Consensus pattern (37 bp):
TCTAAGATTGATATCATATCTAAGATTGCATATCACA
Found at i:85075987 original size:14 final size:15
Alignment explanation
Indices: 85075932--85075987 Score: 60
Period size: 17 Copynumber: 3.5 Consensus size: 15
85075922 AGATTGTATA
85075932 TCATATCTAAGATTG
1 TCATATCTAAGATTG
85075947 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
85075965 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
85075982 -CATATC
1 TCATATC
85075988 ACATCTAAGA
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
14 6 0.16
17 16 0.43
18 15 0.41
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:85076744 original size:205 final size:205
Alignment explanation
Indices: 85076371--85077082 Score: 1154
Period size: 205 Copynumber: 3.5 Consensus size: 205
85076361 AAATTAACTT
* * * * * * *
85076371 CTTCGATTTTTTCCCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTTAACGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
* *
85076436 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATACCAAACCATCTT
* * * *
85076501 GGATCTGCTTCAGCATAAACATCTGAAGGTGAGATCTGCCATGTATCTGATCTCCATTGAAGTGG
131 GGATCTGCTTCAGCATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCTCTATTGAAGTAG
*
85076566 AGATGCTAGA
196 AGATGCCAGA
* * * *
85076576 CTTTGATTTGTTCTCTGATATTACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAATAC
1 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
85076641 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATACCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATACCAAACCATCTT
*
85076706 GGATCTACTTCAGCATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCTCTATTGAAGTAG
131 GGATCTGCTTCAGCATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCTCTATTGAAGTAG
85076771 AGATGCCAGA
196 AGATGCCAGA
* * *
85076781 CTTCGATTTGTTCTCTGACACTACAGAGACGACAAATCATCTTAGATTTGCTTCATTGTAAATAC
1 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
*
85076846 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTTTAAGCACAAGGATACCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATACCAAACCATCTT
*
85076911 GGATCTGCTTTAGCATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCTCTATTGAAGTAG
131 GGATCTGCTTCAGCATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCTCTATTGAAGTAG
85076976 AGATGCCAGA
196 AGATGCCAGA
* * * * *
85076986 CTTCGATTTGTTCTTTGACAATACAGAGATGAAAAATTATCTTAGATTTGCTTCATTGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
*
85077051 GTGAAAGCCAAATCAGCTATGTCTTTGATTTG
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTG
85077083 CTCTCCGCCA
Statistics
Matches: 474, Mismatches: 33, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
205 474 1.00
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.32
Consensus pattern (205 bp):
CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATACCAAACCATCTT
GGATCTGCTTCAGCATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCTCTATTGAAGTAG
AGATGCCAGA
Found at i:85077110 original size:46 final size:44
Alignment explanation
Indices: 85077057--85077146 Score: 117
Period size: 44 Copynumber: 2.0 Consensus size: 44
85077047 ACACGTGAAA
* *
85077057 GCCAAATCAGCTATGTCTTTGATTTGCTCTCCGCCAATACAGAGAT
1 GCCAAATCAGCTA--TCTTTGATCTGCTCTCCGACAATACAGAGAT
* * *
85077103 GCCAAATCTGGTATCTTTGATCTGCTCTCTGACAATACAGAGAT
1 GCCAAATCAGCTATCTTTGATCTGCTCTCCGACAATACAGAGAT
85077147 ACTGAATCTG
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
44 28 0.72
46 11 0.28
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (44 bp):
GCCAAATCAGCTATCTTTGATCTGCTCTCCGACAATACAGAGAT
Found at i:85077276 original size:132 final size:132
Alignment explanation
Indices: 85077151--85077551 Score: 658
Period size: 132 Copynumber: 3.0 Consensus size: 132
85077141 AGAGATACTG
* * * * * * *
85077151 AATCTGTTGTCTTCAACTTGTTCTCTATAAACACAGGGATACCATGCTAAAATCTTTGATCTGCT
1 AATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCCTCGATCTGCT
* *
85077216 TTGCTGTAAGCACAGTAGTGTCAGATCTGTTATCTTCGATCTGTTCCCTATAAACACAGAGATGC
66 TCGCTGTAAGCACAGGAGTGTCAGATCTGTTATCTTCGATCTGTTCCCTATAAACACAGAGATGC
85077281 CA
131 CA
*
85077283 AATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCCTCGATTTGCT
1 AATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCCTCGATCTGCT
** *
85077348 TCGCTGTAAGCACAGGAGTGTCAGATCTGTTATCTTCGATCTGTTCCCTATAAACGTAGTGATGC
66 TCGCTGTAAGCACAGGAGTGTCAGATCTGTTATCTTCGATCTGTTCCCTATAAACACAGAGATGC
85077413 CA
131 CA
*
85077415 AATTTGCTATCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCCTCGATCTGCT
1 AATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCCTCGATCTGCT
* *
85077480 TCGCTGTAAGCACAGGAGTGTCAGATCTGTTATCTTTGATCTGTTCCCTATAAACACAGGGATGC
66 TCGCTGTAAGCACAGGAGTGTCAGATCTGTTATCTTCGATCTGTTCCCTATAAACACAGAGATGC
85077545 CA
131 CA
85077547 AATCT
1 AATCT
85077552 TGTTTCTTTG
Statistics
Matches: 249, Mismatches: 20, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
132 249 1.00
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.32
Consensus pattern (132 bp):
AATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCCTCGATCTGCT
TCGCTGTAAGCACAGGAGTGTCAGATCTGTTATCTTCGATCTGTTCCCTATAAACACAGAGATGC
CA
Found at i:85077294 original size:44 final size:44
Alignment explanation
Indices: 85077240--85077559 Score: 253
Period size: 44 Copynumber: 7.3 Consensus size: 44
85077230 GTAGTGTCAG
*
85077240 ATCTGTTATCTTCGATCTGTTCCCTATAAACACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAA
* *
85077284 ATCTGCTATCTTC-AACTTGTTCCCTATAAACACAGGGATGCC--
1 ATCTGTTATCTTCGATC-TGTTCCCTATAAACACAGGGATGCCAA
** * * * * * * *
85077326 ATGCTGAAATCCTCGATTTGCTTCGCTGTAAGCACA-GGAGTGTCAG
1 AT-CTGTTATCTTCGATCTG-TTCCCTATAAACACAGGGA-TGCCAA
** *
85077372 ATCTGTTATCTTCGATCTGTTCCCTATAAACGTAGTGATGCCAA
1 ATCTGTTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAA
* * *
85077416 ATTTGCTATCTTC-AACTTGTTCCCTATAAACACAGGGATGCC--
1 ATCTGTTATCTTCGATC-TGTTCCCTATAAACACAGGGATGCCAA
** * * * * * *
85077458 ATGCTGAAATCCTCGATCTGCTTCGCTGTAAGCACA-GGAGTGTCAG
1 AT-CTGTTATCTTCGATCTG-TTCCCTATAAACACAGGGA-TGCCAA
*
85077504 ATCTGTTATCTTTGATCTGTTCCCTATAAACACAGGGATGCCAA
1 ATCTGTTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAA
85077548 ATCTTGTT-TCTT
1 ATC-TGTTATCTT
85077560 TGAACTACAT
Statistics
Matches: 211, Mismatches: 48, Indels: 34
0.72 0.16 0.12
Matches are distributed among these distances:
42 4 0.02
43 29 0.14
44 139 0.66
45 35 0.17
46 4 0.02
ACGTcount: A:0.25, C:0.24, G:0.18, T:0.33
Consensus pattern (44 bp):
ATCTGTTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAA
Found at i:85077318 original size:88 final size:89
Alignment explanation
Indices: 85077152--85077551 Score: 252
Period size: 88 Copynumber: 4.5 Consensus size: 89
85077142 GAGATACTGA
* * * * * * *
85077152 ATCTGTTGTCTTC-AACTTGTTCTCTATAAACACAGGGATACC--ATGCTAAAATCTTTGATCTG
1 ATCTGTTATCTTCGATC-TGTTCCCTATAAACACAGGGATGCCAAAT-CTGATATCTTCGATCTG
** * *
85077214 CTTTGCTGTAAGCACAGTAG-TGTCAG
64 -TTCCCTATAAACACAGTAGATGTCAG
* * *
85077240 ATCTGTTATCTTCGATCTGTTCCCTATAAACACAGAGATGCCAAATCTGCTATCTTC-AACTTGT
1 ATCTGTTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGATATCTTCGATC-TGT
* *
85077304 TCCCTATAAACACAG-GGATG-C-C
65 TCCCTATAAACACAGTAGATGTCAG
** * * * * * * * *
85077326 ATGCTGAAATCCTCGATTTGCTTCGCTGTAAGCACA-GGAGTGTCAGATCTGTTATCTTCGATCT
1 AT-CTGTTATCTTCGATCTG-TTCCCTATAAACACAGGGA-TGCCAAATCTGATATCTTCGATCT
** * *
85077390 GTTCCCTATAAACGTAGT-GATGCCAA
63 GTTCCCTATAAACACAGTAGATGTCAG
* * * * *
85077416 ATTTGCTATCTTC-AACTTGTTCCCTATAAACACAGGGATGCC--ATGCTGAAATCCTCGATCTG
1 ATCTGTTATCTTCGATC-TGTTCCCTATAAACACAGGGATGCCAAAT-CTGATATCTTCGATCTG
* * * *
85077478 CTTCGCTGTAAGCACAGGAG-TGTCAG
64 -TTCCCTATAAACACAGTAGATGTCAG
*
85077504 ATCTGTTATCTTTGATCTGTTCCCTATAAACACAGGGATGCCAAATCT
1 ATCTGTTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCT
85077552 TGTTTCTTTG
Statistics
Matches: 236, Mismatches: 56, Indels: 39
0.71 0.17 0.12
Matches are distributed among these distances:
86 4 0.02
87 31 0.13
88 164 0.69
89 31 0.13
90 6 0.03
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.33
Consensus pattern (89 bp):
ATCTGTTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGATATCTTCGATCTGTT
CCCTATAAACACAGTAGATGTCAG
Found at i:85078460 original size:8 final size:7
Alignment explanation
Indices: 85078442--85078504 Score: 51
Period size: 8 Copynumber: 8.7 Consensus size: 7
85078432 GGCCTCTCCA
*
85078442 TTTTTAT
1 TTTTTCT
85078449 TTTTTCT
1 TTTTTCT
85078456 CTTTTT-T
1 -TTTTTCT
85078463 ATTTTTC-
1 -TTTTTCT
85078470 TTTTTCTT
1 TTTTTC-T
85078478 TTTTTCTT
1 TTTTTC-T
85078486 TTTTTCT
1 TTTTTCT
85078493 TTTATT-T
1 TTT-TTCT
85078500 TTTTT
1 TTTTT
85078505 TGAAATAGAA
Statistics
Matches: 49, Mismatches: 2, Indels: 11
0.79 0.03 0.18
Matches are distributed among these distances:
6 8 0.16
7 20 0.41
8 21 0.43
ACGTcount: A:0.05, C:0.10, G:0.00, T:0.86
Consensus pattern (7 bp):
TTTTTCT
Found at i:85078463 original size:16 final size:15
Alignment explanation
Indices: 85078442--85078505 Score: 71
Period size: 15 Copynumber: 4.3 Consensus size: 15
85078432 GGCCTCTCCA
85078442 TTTTTATTTTTTCTCT
1 TTTTTATTTTTTCT-T
85078458 TTTTTA-TTTTTCTT
1 TTTTTATTTTTTCTT
*
85078472 TTTCT-TTTTTTCTT
1 TTTTTATTTTTTCTT
*
85078486 TTTTTCTTTTATT-TT
1 TTTTTATTTT-TTCTT
85078501 TTTTT
1 TTTTT
85078506 GAAATAGAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
14 17 0.40
15 18 0.42
16 8 0.19
ACGTcount: A:0.05, C:0.09, G:0.00, T:0.86
Consensus pattern (15 bp):
TTTTTATTTTTTCTT
Found at i:85078467 original size:21 final size:20
Alignment explanation
Indices: 85078449--85078503 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 20
85078439 CCATTTTTAT
85078449 TTTTTCTCTTTTTTATTTTTC
1 TTTTTCT-TTTTTTATTTTTC
* *
85078470 TTTTTCTTTTTTTCTTTTTT
1 TTTTTCTTTTTTTATTTTTC
*
85078490 TCTTTTATTTTTTT
1 T-TTTTCTTTTTTT
85078504 TTGAAATAGA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
20 12 0.40
21 18 0.60
ACGTcount: A:0.04, C:0.11, G:0.00, T:0.85
Consensus pattern (20 bp):
TTTTTCTTTTTTTATTTTTC
Found at i:85078473 original size:13 final size:12
Alignment explanation
Indices: 85078443--85078505 Score: 63
Period size: 13 Copynumber: 4.8 Consensus size: 12
85078433 GCCTCTCCAT
85078443 TTTTATTTTTTCTC
1 TTTT-TTTTTT-TC
85078457 TTTTTTATTTTTC
1 TTTTTT-TTTTTC
85078470 TTTTTCTTTTTTTC
1 -TTTT-TTTTTTTC
*
85078484 TTTTTTTCTTTTA
1 TTTTTTT-TTTTC
85078497 TTTTTTTTT
1 TTTTTTTTT
85078506 GAAATAGAAG
Statistics
Matches: 44, Mismatches: 1, Indels: 10
0.80 0.02 0.18
Matches are distributed among these distances:
12 5 0.11
13 19 0.43
14 18 0.41
15 2 0.05
ACGTcount: A:0.05, C:0.10, G:0.00, T:0.86
Consensus pattern (12 bp):
TTTTTTTTTTTC
Found at i:85078473 original size:27 final size:26
Alignment explanation
Indices: 85078443--85078505 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 26
85078433 GCCTCTCCAT
*
85078443 TTTTATTTTTTCTCTTTTTTAT-TTTTC
1 TTTT-TTTTTTCTCTTTTTT-TCTTTTA
*
85078470 TTTTTCTTTTTTTCTTTTTTTCTTTTA
1 TTTTT-TTTTTCTCTTTTTTTCTTTTA
85078497 TTTTTTTTT
1 TTTTTTTTT
85078506 GAAATAGAAG
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
26 6 0.19
27 26 0.81
ACGTcount: A:0.05, C:0.10, G:0.00, T:0.86
Consensus pattern (26 bp):
TTTTTTTTTTCTCTTTTTTTCTTTTA
Found at i:85085205 original size:46 final size:45
Alignment explanation
Indices: 85085155--85085323 Score: 182
Period size: 46 Copynumber: 3.7 Consensus size: 45
85085145 TGAGCATCCA
85085155 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATGTCCG
* * * *
85085201 AACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATGTAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAA-T--G--TCCG
* *
85085248 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATGTCCG
* *
85085294 AGCTCGTTGAGTTGAGTTCGAGTTCACTTA
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTA
85085324 GGGGCGGGTT
Statistics
Matches: 102, Mismatches: 12, Indels: 18
0.77 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 56 0.55
47 29 0.28
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (45 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATGTCCG
Found at i:85085307 original size:93 final size:93
Alignment explanation
Indices: 85085148--85085318 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
85085138 GGATGGTTGA
* *
85085148 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
85085213 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* * *
85085241 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCCGAGCTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
85085306 TGAGTTCGAGTTC
66 TGAGTCCGAGTTC
85085319 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:85087233 original size:17 final size:17
Alignment explanation
Indices: 85087174--85087233 Score: 63
Period size: 17 Copynumber: 3.5 Consensus size: 17
85087164 TAATAAATTT
85087174 AAAATATAATATATAATAA
1 AAAATATAAT-TAT-ATAA
85087193 AAAATAT-ATT-TAT-A
1 AAAATATAATTATATAA
*
85087207 AGAATAATAATTATATAA
1 AAAAT-ATAATTATATAA
85087225 AAAATATAA
1 AAAATATAA
85087234 AATATATTGG
Statistics
Matches: 35, Mismatches: 2, Indels: 10
0.74 0.04 0.21
Matches are distributed among these distances:
14 5 0.14
15 4 0.11
16 4 0.11
17 8 0.23
18 7 0.20
19 7 0.20
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (17 bp):
AAAATATAATTATATAA
Found at i:85087585 original size:45 final size:45
Alignment explanation
Indices: 85087521--85087607 Score: 165
Period size: 45 Copynumber: 1.9 Consensus size: 45
85087511 GAGTAAGAAT
*
85087521 GCAAGAGGGAGAGAAATTTGAGTGAATGCTCTCAAGAATTCTAAC
1 GCAAGAGGGAAAGAAATTTGAGTGAATGCTCTCAAGAATTCTAAC
85087566 GCAAGAGGGAAAGAAATTTGAGTGAATGCTCTCAAGAATTCT
1 GCAAGAGGGAAAGAAATTTGAGTGAATGCTCTCAAGAATTCT
85087608 TATTGCTTCC
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.38, C:0.13, G:0.26, T:0.23
Consensus pattern (45 bp):
GCAAGAGGGAAAGAAATTTGAGTGAATGCTCTCAAGAATTCTAAC
Found at i:85087787 original size:19 final size:19
Alignment explanation
Indices: 85087763--85087853 Score: 143
Period size: 19 Copynumber: 4.9 Consensus size: 19
85087753 AATCATATCT
*
85087763 TCTAAGATTGTATATCATA
1 TCTAAGATTGCATATCATA
85087782 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
85087800 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
*
85087817 TCTAAGATTGCATATCACA
1 TCTAAGATTGCATATCATA
85087836 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
85087854 TGGAGATTAT
Statistics
Matches: 66, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
17 16 0.24
18 16 0.24
19 34 0.52
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:85087821 original size:35 final size:37
Alignment explanation
Indices: 85087763--85087853 Score: 141
Period size: 35 Copynumber: 2.5 Consensus size: 37
85087753 AATCATATCT
*
85087763 TCTAAGATTGTATATCATATCTAAGATTGCA-ATCATA
1 TCTAAGATTG-ATATCATATCTAAGATTGCATATCACA
85087800 TCTAAGATTG-TATCATATCTAAGATTGCATATCACA
1 TCTAAGATTGATATCATATCTAAGATTGCATATCACA
85087836 TCTAAGATTGCATATCAT
1 TCTAAGATTG-ATATCAT
85087854 TGGAGATTAT
Statistics
Matches: 50, Mismatches: 1, Indels: 5
0.89 0.02 0.09
Matches are distributed among these distances:
35 19 0.38
36 15 0.30
37 10 0.20
38 6 0.12
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.37
Consensus pattern (37 bp):
TCTAAGATTGATATCATATCTAAGATTGCATATCACA
Found at i:85087832 original size:14 final size:15
Alignment explanation
Indices: 85087777--85087832 Score: 60
Period size: 17 Copynumber: 3.5 Consensus size: 15
85087767 AGATTGTATA
85087777 TCATATCTAAGATTG
1 TCATATCTAAGATTG
85087792 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
85087810 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
85087827 -CATATC
1 TCATATC
85087833 ACATCTAAGA
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
14 6 0.16
17 16 0.43
18 15 0.41
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:85089535 original size:15 final size:15
Alignment explanation
Indices: 85089515--85089544 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
85089505 AAAGAAAACG
85089515 TGGAAGCTACGCATC
1 TGGAAGCTACGCATC
85089530 TGGAAGCTACGCATC
1 TGGAAGCTACGCATC
85089545 AGTACGAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.27, G:0.27, T:0.20
Consensus pattern (15 bp):
TGGAAGCTACGCATC
Found at i:85099485 original size:38 final size:38
Alignment explanation
Indices: 85099434--85099508 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
85099424 GTATTTGGGT
* *
85099434 TAAATCCCGCAGGCTTCA-TGCTGGTATTATATCCGGGA
1 TAAATCCCGCAGGCCT-AGTACTGGTATTATATCCGGGA
*
85099472 TAAATCCCGCAGGCCTAGTACTGGTATTATATTCGGG
1 TAAATCCCGCAGGCCTAGTACTGGTATTATATCCGGG
85099509 CCTTCGTGCC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.24, C:0.23, G:0.24, T:0.29
Consensus pattern (38 bp):
TAAATCCCGCAGGCCTAGTACTGGTATTATATCCGGGA
Found at i:85099585 original size:43 final size:43
Alignment explanation
Indices: 85099501--85099663 Score: 283
Period size: 43 Copynumber: 3.8 Consensus size: 43
85099491 ACTGGTATTA
85099501 TATTCGGGCCTTCGTGCCTAGCA-GCTTAGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
*
85099543 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCAGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
*
85099586 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
* *
85099629 TATTCGGGCCTTCGTGCCTAGCAGGCGTAATGCCG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCG
85099664 TTGTTATGTG
Statistics
Matches: 114, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
42 23 0.20
43 91 0.80
ACGTcount: A:0.12, C:0.25, G:0.34, T:0.29
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
Found at i:85101672 original size:44 final size:44
Alignment explanation
Indices: 85101622--85101832 Score: 280
Period size: 44 Copynumber: 4.8 Consensus size: 44
85101612 CAAGATGATC
* * * * * *
85101622 TGGCATCTTTGTATTGTCAGAGAACAAATTGAAGATAGCAGATT
1 TGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAGATT
* * *
85101666 TGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGGTAGCAGATT
1 TGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAGATT
*
85101710 TGGCATCTCTGTATTGACAGAGAGCAGATCGAAGATAACAGATT
1 TGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAGATT
* *
85101754 TGGCATCTCTGTATTGGCAGAGAGTAGATCGAAGATAACATATT
1 TGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAGATT
* *
85101798 TGGCATCTCTGTACTGGCA-AGGAGCAAATCGAAGA
1 TGGCATCTCTGTATTGGCAGA-GAGCAGATCGAAGA
85101833 CATAGCTGAT
Statistics
Matches: 149, Mismatches: 17, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
43 1 0.01
44 148 0.99
ACGTcount: A:0.32, C:0.15, G:0.26, T:0.27
Consensus pattern (44 bp):
TGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAGATT
Found at i:85101874 original size:47 final size:47
Alignment explanation
Indices: 85101820--85101966 Score: 114
Period size: 47 Copynumber: 3.3 Consensus size: 47
85101810 ACTGGCAAGG
85101820 AGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTAGGTTGA
1 AGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTAGGTTGA
* * * ** *
85101867 AGCAAATCTAAG----A--TGATTTGGC-GTCTC-TGTATT-GGCAGGG
1 AGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGT-TTAGG-TTGA
* * * *
85101907 AGCAGATCGAAGACATAGCTAATTTAGCTTTCACGTGTTTACGTTGA
1 AGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTAGGTTGA
*
85101954 AGCAAATCTAAGA
1 AGCAAATCGAAGA
85101967 TGATTTGGCA
Statistics
Matches: 71, Mismatches: 18, Indels: 22
0.64 0.16 0.20
Matches are distributed among these distances:
39 5 0.07
40 16 0.23
41 9 0.13
43 1 0.01
44 1 0.01
46 7 0.10
47 28 0.39
48 4 0.06
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (47 bp):
AGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTAGGTTGA
Found at i:85101903 original size:87 final size:87
Alignment explanation
Indices: 85101795--85102026 Score: 338
Period size: 87 Copynumber: 2.7 Consensus size: 87
85101785 AAGATAACAT
* *
85101795 ATTTGGCATCTCTGTACTGGCAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTT
1 ATTTGGCATCTCTGTATTGGCAGGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTT
*
85101860 AGGTTGAAGCAAATCTAAGATG
66 ACGTTGAAGCAAATCTAAGATG
* * * *
85101882 ATTTGGCGTCTCTGTATTGGCAGGGAGCAGATCGAAGACATAGCTAATTTAGCTTTCACGTGTTT
1 ATTTGGCATCTCTGTATTGGCAGGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTT
85101947 ACGTTGAAGCAAATCTAAGATG
66 ACGTTGAAGCAAATCTAAGATG
* * * * * * *
85101969 ATTTGGCATTTCTGTATTAGCGGGGAGCAAATCGAAAACATAGCAGATCTGACTTTCA
1 ATTTGGCATCTCTGTATTGGCAGGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCA
85102027 TCAAAGCAGA
Statistics
Matches: 127, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
87 127 1.00
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (87 bp):
ATTTGGCATCTCTGTATTGGCAGGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTT
ACGTTGAAGCAAATCTAAGATG
Found at i:85103849 original size:23 final size:20
Alignment explanation
Indices: 85103816--85103900 Score: 75
Period size: 21 Copynumber: 4.2 Consensus size: 20
85103806 AAAGTAGTAC
*
85103816 ATATTATTTTTATTATCTA-AT
1 ATATTATTGTT-TTAT-TATAT
85103837 ATATTATTGTTTTATTATAT
1 ATATTATTGTTTTATTATAT
*
85103857 ATATTATTGATTTTACTATAT
1 ATATTATTG-TTTTATTATAT
* * *
85103878 TTATCTATTATATTATTAT-T
1 ATAT-TATTGTTTTATTATAT
85103898 ATA
1 ATA
85103901 CATTTTAAAT
Statistics
Matches: 54, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
19 2 0.04
20 18 0.33
21 30 0.56
22 4 0.07
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.61
Consensus pattern (20 bp):
ATATTATTGTTTTATTATAT
Found at i:85104037 original size:34 final size:34
Alignment explanation
Indices: 85103999--85104074 Score: 152
Period size: 34 Copynumber: 2.2 Consensus size: 34
85103989 TTATATTGTT
85103999 CATACTATTATACATTTTATTTATAAATTTAGTA
1 CATACTATTATACATTTTATTTATAAATTTAGTA
85104033 CATACTATTATACATTTTATTTATAAATTTAGTA
1 CATACTATTATACATTTTATTTATAAATTTAGTA
85104067 CATACTAT
1 CATACTAT
85104075 GTATTTTTCC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 42 1.00
ACGTcount: A:0.38, C:0.11, G:0.03, T:0.49
Consensus pattern (34 bp):
CATACTATTATACATTTTATTTATAAATTTAGTA
Found at i:85113712 original size:50 final size:50
Alignment explanation
Indices: 85113632--85113964 Score: 283
Period size: 50 Copynumber: 6.6 Consensus size: 50
85113622 TTCGTTGTGA
** *
85113632 GTCACATGTGTAGTACTAAGTGTAAACTACTACGTGTACCAAATTGATAG
1 GTCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTGATAG
* * * * * * *
85113682 GTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCG-TTAACTTCG
1 GTCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTGA--TAG
* * * * * * * * * *
85113733 ATCACGTGTGTAGTAATAAGTTTAGGCTACAATGTGTATCAGATGGTTAA
1 GTCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTGATAG
*
85113783 GTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTGATAG
1 GTCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTGATAG
* * * * * * * **
85113833 GTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTGCCCG-TTAACTTCT
1 GTCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTGA--TAG
* * * * * *
85113884 ATCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACTAGATTGATCG
1 GTCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTGATAG
*
85113934 GTCGCATGTGTAGTACTAAGTGTAGGCTACT
1 GTCACATGTGTAGTACTAAGTGTAGGCTACT
85113965 GTGCTTACCA
Statistics
Matches: 218, Mismatches: 59, Indels: 12
0.75 0.20 0.04
Matches are distributed among these distances:
49 6 0.03
50 140 0.64
51 68 0.31
52 4 0.02
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (50 bp):
GTCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTGATAG
Found at i:85113911 original size:151 final size:151
Alignment explanation
Indices: 85113631--85113964 Score: 499
Period size: 151 Copynumber: 2.2 Consensus size: 151
85113621 ATTCGTTGTG
**
85113631 AGTCACATGTGTAGTACTAAGTGTAAACTACTACGTGTACCAAATTGATAGGTCGCATGTGTAGT
1 AGTCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAAATTGATAGGTCGCATGTGTAGT
**
85113696 ACTAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGATCACGTGTGTAGTAATAAGTTTAGGCT
66 ACTAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGATCACGTGTGTAGTAATAAGTGCAGGCT
** *
85113761 ACAATGTGTA-TCAGATGGTTA
131 ACAACATGTACT-AGATGGATA
* *
85113782 AGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
1 AGTCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAAATTGATAGGTCGCATGTGTAGT
* * *
85113847 ACTAAGTGCAGGCTACTATGCGTGCCCGTTAACTTCTATCACGTGTGTAGTACTAAGTGCAGGCT
66 ACTAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGATCACGTGTGTAGTAATAAGTGCAGGCT
* * *
85113912 ACTACATGTACTAGATTGATC
131 ACAACATGTACTAGATGGATA
* *
85113933 GGTCGCATGTGTAGTACTAAGTGTAGGCTACT
1 AGTCACATGTGTAGTACTAAGTGTAGGCTACT
85113965 GTGCTTACCA
Statistics
Matches: 164, Mismatches: 18, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
151 163 0.99
152 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.31
Consensus pattern (151 bp):
AGTCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAAATTGATAGGTCGCATGTGTAGT
ACTAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGATCACGTGTGTAGTAATAAGTGCAGGCT
ACAACATGTACTAGATGGATA
Found at i:85122752 original size:19 final size:19
Alignment explanation
Indices: 85122716--85122754 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
85122706 TTTTCATCAT
* *
85122716 AGTAAAATAAAATAATAAA
1 AGTAAAACAAAACAATAAA
*
85122735 AGTAAAACAAAACCATAAA
1 AGTAAAACAAAACAATAAA
85122754 A
1 A
85122755 ATAATTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.72, C:0.08, G:0.05, T:0.15
Consensus pattern (19 bp):
AGTAAAACAAAACAATAAA
Found at i:85123272 original size:28 final size:29
Alignment explanation
Indices: 85123218--85123280 Score: 101
Period size: 28 Copynumber: 2.2 Consensus size: 29
85123208 GTGACAGAGT
*
85123218 CACCAGATACAAATATTTTGTGGCAGTGC
1 CACCAGATACAAATAATTTGTGGCAGTGC
*
85123247 CACCAGA-ACAGATAATTTGTGGCAGTGC
1 CACCAGATACAAATAATTTGTGGCAGTGC
85123275 CACCAG
1 CACCAG
85123281 GACGCTTCCT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
28 25 0.78
29 7 0.22
ACGTcount: A:0.32, C:0.24, G:0.22, T:0.22
Consensus pattern (29 bp):
CACCAGATACAAATAATTTGTGGCAGTGC
Found at i:85123433 original size:28 final size:28
Alignment explanation
Indices: 85123386--85123450 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
85123376 AAATTAACCC
*
85123386 TAGGGGTATAAAGGTCATTTAGCATACA
1 TAGGGGTATAAAGGTAATTTAGCATACA
* *
85123414 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTAGCATACA
85123442 TAGGGGTAT
1 TAGGGGTAT
85123451 TCTAGTAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.32, C:0.08, G:0.28, T:0.32
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTAGCATACA
Found at i:85127565 original size:24 final size:24
Alignment explanation
Indices: 85127536--85127588 Score: 97
Period size: 24 Copynumber: 2.2 Consensus size: 24
85127526 CCTAGAAATA
85127536 GGTGACAATATTTTGTCAGATTAG
1 GGTGACAATATTTTGTCAGATTAG
*
85127560 GGTGACAATATTTTGTCGGATTAG
1 GGTGACAATATTTTGTCAGATTAG
85127584 GGTGA
1 GGTGA
85127589 AACCTAATAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.26, C:0.08, G:0.30, T:0.36
Consensus pattern (24 bp):
GGTGACAATATTTTGTCAGATTAG
Found at i:85128652 original size:17 final size:17
Alignment explanation
Indices: 85128630--85128663 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
85128620 ATCCTTTATC
85128630 ATTTTT-TTAATTTCCTT
1 ATTTTTGTT-ATTTCCTT
85128647 ATTTTTGTTATTTCCTT
1 ATTTTTGTTATTTCCTT
85128664 TGTTATTTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 14 0.88
18 2 0.12
ACGTcount: A:0.15, C:0.12, G:0.03, T:0.71
Consensus pattern (17 bp):
ATTTTTGTTATTTCCTT
Found at i:85136402 original size:39 final size:39
Alignment explanation
Indices: 85136352--85136487 Score: 202
Period size: 39 Copynumber: 3.5 Consensus size: 39
85136342 TGTATATCTG
85136352 GACTTAAGGTCCGCAGGCTATGTGCTGGAATTATATCCA
1 GACTTAAGGTCCGCAGGCTATGTGCTGGAATTATATCCA
* *
85136391 GACTTAGGGTCCGCAGGCTATGTGCTGGAATTATATCCG
1 GACTTAAGGTCCGCAGGCTATGTGCTGGAATTATATCCA
* *
85136430 GACTTAAGGTCCGCAGGCTATGTGCTGGAAATATGTCCA
1 GACTTAAGGTCCGCAGGCTATGTGCTGGAATTATATCCA
* *
85136469 GGC-TAAAGTCTCGCAGGCT
1 GACTTAAGGTC-CGCAGGCT
85136488 TCGAGCTGGT
Statistics
Matches: 88, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
38 6 0.07
39 82 0.93
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (39 bp):
GACTTAAGGTCCGCAGGCTATGTGCTGGAATTATATCCA
Found at i:85136496 original size:78 final size:78
Alignment explanation
Indices: 85136344--85136507 Score: 217
Period size: 78 Copynumber: 2.1 Consensus size: 78
85136334 TTCAGTGATG
* * **
85136344 TATATCTGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTATATCCAGACTTAGGGTCCGCAGGC
1 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAATATATCCAGACTTAAAGTCCGCAGGC
*
85136409 TATGTGCTGGAAT
66 TATGAGCTGGAAT
* *
85136422 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAATATGTCCAGGC-TAAAGTCTCGCAGG
1 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAATATATCCAGACTTAAAGTC-CGCAGG
*
85136486 CT-TCGAGCTGGTAT
65 CTAT-GAGCTGGAAT
85136500 TATA-CCGG
1 TATATCCGG
85136508 GTTTAAATTC
Statistics
Matches: 76, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
77 10 0.13
78 66 0.87
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (78 bp):
TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAATATATCCAGACTTAAAGTCCGCAGGC
TATGAGCTGGAAT
Found at i:85136522 original size:78 final size:78
Alignment explanation
Indices: 85136344--85136534 Score: 201
Period size: 78 Copynumber: 2.5 Consensus size: 78
85136334 TTCAGTGATG
* * * **
85136344 TATATCTGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTATATCCAGACTTAGGGTCCGCAGGC
1 TATATCCGGACTTAAAGTCCGCAGGCTATGTGCTGGAAATATATCCAGACTTAAAGTCCGCAGGC
*
85136409 TATGTGCTGGAAT
66 TATGAGCTGGAAT
* * *
85136422 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAATATGTCCAGGC-TAAAGTCTCGCAGG
1 TATATCCGGACTTAAAGTCCGCAGGCTATGTGCTGGAAATATATCCAGACTTAAAGTC-CGCAGG
*
85136486 CT-TCGAGCTGGTAT
65 CTAT-GAGCTGGAAT
** * *
85136500 TATA-CCGGGTTTAAATTCCCGCAGGCT-TGTACTGG
1 TATATCCGGACTTAAAGT-CCGCAGGCTATGTGCTGG
85136535 TAATTGGTTT
Statistics
Matches: 97, Mismatches: 13, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
77 22 0.23
78 75 0.77
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.29
Consensus pattern (78 bp):
TATATCCGGACTTAAAGTCCGCAGGCTATGTGCTGGAAATATATCCAGACTTAAAGTCCGCAGGC
TATGAGCTGGAAT
Found at i:85137895 original size:26 final size:26
Alignment explanation
Indices: 85137866--85138001 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
85137856 TGATACAAAT
* *
85137866 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
*
85137892 TGATAATGGGTTAGGTAAATGTTTAA
1 TGATAATGGGTTAGGTAAATGTTTCA
* *
85137918 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
85137944 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
85137970 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
85137996 TGATAA
1 TGATAA
85138002 GAATTTCATG
Statistics
Matches: 102, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 102 1.00
ACGTcount: A:0.34, C:0.04, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:85141306 original size:24 final size:25
Alignment explanation
Indices: 85141278--85141377 Score: 76
Period size: 25 Copynumber: 4.0 Consensus size: 25
85141268 GAATCTGTAT
*
85141278 GCTCTTACGAGCTGTA-AACGGTAA
1 GCTCTTACGAGCTGAATAACGGTAA
** *
85141302 GCTCTTTTGTGCTGAATAACGGTAA
1 GCTCTTACGAGCTGAATAACGGTAA
* * * **
85141327 GCTCCTACAAGTTGAATAATAGTAA
1 GCTCTTACGAGCTGAATAACGGTAA
* * * *
85141352 GCTCATGCGAGCTGAGTATCGGTAA
1 GCTCTTACGAGCTGAATAACGGTAA
85141377 G
1 G
85141378 TTCATACAAG
Statistics
Matches: 55, Mismatches: 20, Indels: 1
0.72 0.26 0.01
Matches are distributed among these distances:
24 12 0.22
25 43 0.78
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (25 bp):
GCTCTTACGAGCTGAATAACGGTAA
Found at i:85150355 original size:40 final size:41
Alignment explanation
Indices: 85150310--85150476 Score: 164
Period size: 40 Copynumber: 4.2 Consensus size: 41
85150300 CGGAATATAA
*
85150310 CCGGATATAATCAAGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
85150350 CCGGATAGAAT-AACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
85150390 CCGGATGT-AGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
85150430 CCGGATATAAT-TTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
85150469 CCGGATAT
1 CCGGATAT
85150477 CATTCAATTT
Statistics
Matches: 105, Mismatches: 19, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
39 17 0.16
40 87 0.83
41 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (41 bp):
CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:85151325 original size:17 final size:19
Alignment explanation
Indices: 85151302--85151347 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
85151292 AAGAAGCATG
85151302 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
85151320 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
85151338 AATCATGCTC
1 AATCATGCTC
85151348 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:85153385 original size:40 final size:39
Alignment explanation
Indices: 85153274--85153424 Score: 151
Period size: 40 Copynumber: 3.8 Consensus size: 39
85153264 TATAATCAGT
* * *
85153274 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* *
85153314 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* *** *
85153354 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* *
85153394 GCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAT
85153425 CATTCAATTT
Statistics
Matches: 95, Mismatches: 15, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
39 15 0.16
40 80 0.84
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
Found at i:85153408 original size:80 final size:79
Alignment explanation
Indices: 85153274--85153424 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
85153264 TATAATCAGT
*
85153274 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
85153339 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
85153354 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
85153417 CCGGATAT
64 CCGGATAT
85153425 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:85154264 original size:17 final size:19
Alignment explanation
Indices: 85154241--85154286 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
85154231 AAGAAGCATG
85154241 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
85154259 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
85154277 AATCATGCTC
1 AATCATGCTC
85154287 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:85161309 original size:40 final size:41
Alignment explanation
Indices: 85161264--85161430 Score: 164
Period size: 40 Copynumber: 4.2 Consensus size: 41
85161254 CGGAATATAA
*
85161264 CCGGATATAATCAAGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
85161304 CCGGATAGAAT-AACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
85161344 CCGGATGT-AGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
85161384 CCGGATATAAT-TTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
85161423 CCGGATAT
1 CCGGATAT
85161431 CATTCAATTT
Statistics
Matches: 105, Mismatches: 19, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
39 17 0.16
40 87 0.83
41 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (41 bp):
CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:85162279 original size:17 final size:19
Alignment explanation
Indices: 85162256--85162301 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
85162246 AAGAAGCATG
85162256 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
85162274 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
85162292 AATCATGCTC
1 AATCATGCTC
85162302 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:85164792 original size:41 final size:41
Alignment explanation
Indices: 85164747--85164978 Score: 304
Period size: 41 Copynumber: 5.7 Consensus size: 41
85164737 GAATATAAAC
* * *
85164747 AGGGGCACGTATGTGCTATTTAAGGGTACCAAAGTACAAAT
1 AGGGGCACGTATGTGCAATTCAAGGGTACCGAAGTACAAAT
* *
85164788 AGGGGCACGTATGTGCTATTCAAGGGTACCGAAGTAAAAAT
1 AGGGGCACGTATGTGCAATTCAAGGGTACCGAAGTACAAAT
*
85164829 AGGGGCACGTATGTGCAATTCAGGGGTACCGAAGTACAAAT
1 AGGGGCACGTATGTGCAATTCAAGGGTACCGAAGTACAAAT
* * * * *
85164870 AAGGGAACATATGTGCAATTCAAGTGTACCGACGTACAAAT
1 AGGGGCACGTATGTGCAATTCAAGGGTACCGAAGTACAAAT
* * * *
85164911 AGGGGCACGTATGTACAATTTAGGGGTACCGAAGTACAAAC
1 AGGGGCACGTATGTGCAATTCAAGGGTACCGAAGTACAAAT
* *
85164952 AGAGGCACGTATGTACAATTC-AGGGTA
1 AGGGGCACGTATGTGCAATTCAAGGGTA
85164979 TAATTAATTA
Statistics
Matches: 167, Mismatches: 24, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
40 5 0.03
41 162 0.97
ACGTcount: A:0.34, C:0.16, G:0.28, T:0.22
Consensus pattern (41 bp):
AGGGGCACGTATGTGCAATTCAAGGGTACCGAAGTACAAAT
Found at i:85164874 original size:21 final size:20
Alignment explanation
Indices: 85164811--85164950 Score: 59
Period size: 21 Copynumber: 6.8 Consensus size: 20
85164801 TGCTATTCAA
*
85164811 GGGTACCGAAGTAAAAATAG
1 GGGTACCGAAGTACAAATAG
* * * *
85164831 GGGCA-CGTATGTGCAATTCAG
1 GGGTACCG-AAGTACAAAT-AG
*
85164852 GGGTACCGAAGTACAAATAA
1 GGGTACCGAAGTACAAATAG
* ** * * * *
85164872 GGGAACATATGTGCAATTCAA
1 GGGTACCGAAGTACAAAT-AG
* *
85164893 GTGTACCGACGTACAAATAG
1 GGGTACCGAAGTACAAATAG
* * *
85164913 GGGCA-CGTATGTACAATTTAG
1 GGGTACCG-AAGTACAA-ATAG
85164934 GGGTACCGAAGTACAAA
1 GGGTACCGAAGTACAAA
85164951 CAGAGGCACG
Statistics
Matches: 82, Mismatches: 31, Indels: 14
0.65 0.24 0.11
Matches are distributed among these distances:
19 4 0.05
20 34 0.41
21 40 0.49
22 4 0.05
ACGTcount: A:0.36, C:0.16, G:0.28, T:0.20
Consensus pattern (20 bp):
GGGTACCGAAGTACAAATAG
Found at i:85164928 original size:20 final size:20
Alignment explanation
Indices: 85164903--85164969 Score: 64
Period size: 20 Copynumber: 3.3 Consensus size: 20
85164893 GTGTACCGAC
85164903 GTACAAATAGGGGCACGTAT
1 GTACAAATAGGGGCACGTAT
* * *
85164923 GTACAATTTAGGGGTACCG-AA
1 GTACAA-ATAGGGGCA-CGTAT
* *
85164944 GTACAAACAGAGGCACGTAT
1 GTACAAATAGGGGCACGTAT
85164964 GTACAA
1 GTACAA
85164970 TTCAGGGTAT
Statistics
Matches: 36, Mismatches: 8, Indels: 6
0.72 0.16 0.12
Matches are distributed among these distances:
19 2 0.06
20 18 0.50
21 14 0.39
22 2 0.06
ACGTcount: A:0.37, C:0.16, G:0.27, T:0.19
Consensus pattern (20 bp):
GTACAAATAGGGGCACGTAT
Found at i:85169651 original size:2 final size:2
Alignment explanation
Indices: 85169644--85169680 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
85169634 TTGCATATGC
85169644 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
85169681 AGCTTATGAC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:85175251 original size:40 final size:40
Alignment explanation
Indices: 85175059--85175244 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
85175049 TCGAATGATG
* * * *
85175059 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** *
85175099 TCCGGACTAAGAT-CTGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
85175139 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
85175179 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* * *
85175220 -CCGGGCTATGTCCCGAAGACATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
85175245 AACGAGTAGC
Statistics
Matches: 131, Mismatches: 11, Indels: 8
0.87 0.07 0.05
Matches are distributed among these distances:
39 1 0.01
40 120 0.92
41 10 0.08
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:85175251 original size:80 final size:79
Alignment explanation
Indices: 85175114--85175267 Score: 213
Period size: 80 Copynumber: 1.9 Consensus size: 79
85175104 ACTAAGATCT
* * **
85175114 GAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTAA
1 GAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGACATTTGAACGAG-TAGCTAA
85175178 ATCCGGGTTAAGTCCC
65 ATCC-GGTTAAGTCCC
* *
85175194 GAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGACATTTGAACGAGTAGCTAT
1 GAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGACATTTGAACGAGTAGCTAA
85175258 ATCCGGTTAA
65 ATCCGGTTAA
85175268 ACTCCGAAGG
Statistics
Matches: 66, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
79 8 0.12
80 56 0.85
81 2 0.03
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (79 bp):
GAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGACATTTGAACGAGTAGCTAAA
TCCGGTTAAGTCCC
Found at i:85179118 original size:43 final size:43
Alignment explanation
Indices: 85179039--85179196 Score: 138
Period size: 43 Copynumber: 3.7 Consensus size: 43
85179029 AATGCCATAT
* * ** *
85179039 CCCAGATATGGTCTTACATGTTATCACATATTGATGCCATTGC
1 CCCAGATATGGTCTTACACGTAATCACATAACGATGCCAATGC
* * * *
85179082 CCCAGATAGGGTCTTACACGAAATCATATAACGATGCCAATGT
1 CCCAGATATGGTCTTACACGTAATCACATAACGATGCCAATGC
* * * *
85179125 CCCAGACATGGTCTTACACGTAATCA-AAATACAATGCCAATGT
1 CCCAGATATGGTCTTACACGTAATCACATA-ACGATGCCAATGC
*** * *
85179168 CCCAGACGCGGTCTTACATGCAATCACAT
1 CCCAGATATGGTCTTACACGTAATCACAT
85179197 CTCGATAACC
Statistics
Matches: 94, Mismatches: 19, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
42 2 0.02
43 91 0.97
44 1 0.01
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (43 bp):
CCCAGATATGGTCTTACACGTAATCACATAACGATGCCAATGC
Found at i:85185990 original size:13 final size:13
Alignment explanation
Indices: 85185972--85185998 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
85185962 TGTGATCATT
85185972 GTAGCTTAATCTA
1 GTAGCTTAATCTA
85185985 GTAGCTTAATCTA
1 GTAGCTTAATCTA
85185998 G
1 G
85185999 CTAATCTAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.19, T:0.37
Consensus pattern (13 bp):
GTAGCTTAATCTA
Found at i:85186794 original size:45 final size:45
Alignment explanation
Indices: 85186707--85186794 Score: 113
Period size: 45 Copynumber: 2.0 Consensus size: 45
85186697 AGACAAGAGA
* * * * *
85186707 TGAAAGATGTTATGGCATCATGATTCTATCTAGTAAGACCATAGG
1 TGAAACATGTTATGGCATCATGACTCAATCAAGAAAGACCATAGG
* *
85186752 TGAAACATGTTATGGTATCATGACTCAATCAAGAAAGGCCATA
1 TGAAACATGTTATGGCATCATGACTCAATCAAGAAAGACCATA
85186795 TTTGAATCAC
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 36 1.00
ACGTcount: A:0.36, C:0.15, G:0.20, T:0.28
Consensus pattern (45 bp):
TGAAACATGTTATGGCATCATGACTCAATCAAGAAAGACCATAGG
Found at i:85187135 original size:41 final size:41
Alignment explanation
Indices: 85187071--85187169 Score: 137
Period size: 41 Copynumber: 2.4 Consensus size: 41
85187061 TGATATTGTG
* *
85187071 GTGTATTATAT-AGGCTTTATGCCTAGCAAGCTTCGTGCCA
1 GTGTATTATATCAGGCTTGATGCCTAGCAAGCTTCGTACCA
* * *
85187111 GTGTATTATATCAGGCTTGGTGCCTAGCAGGCTTCGTATCA
1 GTGTATTATATCAGGCTTGATGCCTAGCAAGCTTCGTACCA
*
85187152 GTGTGTTATATCAGGCTT
1 GTGTATTATATCAGGCTT
85187170 TGAGCTTACC
Statistics
Matches: 52, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
40 11 0.21
41 41 0.79
ACGTcount: A:0.20, C:0.18, G:0.25, T:0.36
Consensus pattern (41 bp):
GTGTATTATATCAGGCTTGATGCCTAGCAAGCTTCGTACCA
Found at i:85187183 original size:41 final size:41
Alignment explanation
Indices: 85187071--85187183 Score: 113
Period size: 41 Copynumber: 2.8 Consensus size: 41
85187061 TGATATTGTG
* * * *
85187071 GTGTATTATAT-AGGCTT-TATGCCTAGCAAGCTTCGTGCCA
1 GTGTATTATATCAGGCTTGGA-GCCTACCAGGCTTCGTACCA
* * *
85187111 GTGTATTATATCAGGCTTGGTGCCTAGCAGGCTTCGTATCA
1 GTGTATTATATCAGGCTTGGAGCCTACCAGGCTTCGTACCA
* * *
85187152 GTGTGTTATATCAGGCTTTGAGCTTACCAGGC
1 GTGTATTATATCAGGCTTGGAGCCTACCAGGC
85187184 CTTGTGTTGA
Statistics
Matches: 61, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
40 11 0.18
41 50 0.82
ACGTcount: A:0.20, C:0.19, G:0.26, T:0.35
Consensus pattern (41 bp):
GTGTATTATATCAGGCTTGGAGCCTACCAGGCTTCGTACCA
Found at i:85189944 original size:47 final size:47
Alignment explanation
Indices: 85189791--85190009 Score: 186
Period size: 47 Copynumber: 4.7 Consensus size: 47
85189781 ATTGTTGGCT
* ** *
85189791 AGTGTAA-AACATGTCTGGGACAT-GCATCGGC-C-ACTTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTCGAGATAT-A-AGTC
* * * * *
85189836 AATGTAAGACCATGTCTGGGACATGGCGTCAGCATTGAGACA-AGAG-C
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-TCGAGATATA-AGTC
*
85189883 TAGTGTAAGA-CATGTCTGGGACAT-ACATCGGCTACGAGATGAT-AGTC
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGCT-CGAGAT-ATAAGTC
* * *
85189930 AGTGTAAGACCATGTCTGAGACATGGCATCGACTTGAGATATAAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTCGAGATATAAGTC
*
85189977 AGTGTAAGACCATGTCTAGGACATGGCATCGGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
85190010 ACCTTACCCA
Statistics
Matches: 140, Mismatches: 21, Indels: 24
0.76 0.11 0.13
Matches are distributed among these distances:
45 7 0.05
46 37 0.26
47 75 0.54
48 19 0.14
50 2 0.01
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCTCGAGATATAAGTC
Found at i:85189967 original size:93 final size:93
Alignment explanation
Indices: 85189788--85190009 Score: 254
Period size: 93 Copynumber: 2.4 Consensus size: 93
85189778 GTTATTGTTG
* **
85189788 GCTAGTGTAAAACATGTCTGGGACATGCATCGGCCACTTATGAGAGCCAATGTAAGACCATGTCT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACAGATGAGAGCCAATGTAAGACCATGTCT
* *
85189853 GGGACATGGCGTCAGCATTGAGACA-AGA
66 GAGACATGGCATCAGCATTGAGACATA-A
* * * * *
85189881 GCTAGTGTAAGACATGTCTGGGACATACATCGGCTACGAGATGATAGTCAGTGTAAGACCATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-AGATGAGAGCCAATGTAAGACCATGTC
*
85189946 TGAGACATGGCATC-G-ACTTGAGATATAA
65 TGAGACATGGCATCAGCA-TTGAGACATAA
*
85189974 G-TCAGTGTAAGACCATGTCTAGGACATGGCATCGGC
1 GCT-AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
85190010 ACCTTACCCA
Statistics
Matches: 110, Mismatches: 13, Indels: 10
0.83 0.10 0.08
Matches are distributed among these distances:
92 2 0.02
93 53 0.48
94 48 0.44
95 7 0.06
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (93 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACAGATGAGAGCCAATGTAAGACCATGTCT
GAGACATGGCATCAGCATTGAGACATAA
Found at i:85205650 original size:41 final size:41
Alignment explanation
Indices: 85205604--85205701 Score: 142
Period size: 41 Copynumber: 2.4 Consensus size: 41
85205594 AAACGCCGCA
* * * *
85205604 AAAAACTAAGCAATAGTGGTGTTTTTGTTCAAAACACCACT
1 AAAAACTGAGCAATAGAGGTATTTGTGTTCAAAACACCACT
*
85205645 AAAAACTGAGCAATAGAGGTATTTGTGTTCAAAACGCCACT
1 AAAAACTGAGCAATAGAGGTATTTGTGTTCAAAACACCACT
*
85205686 AAAAATTGAGCAATAG
1 AAAAACTGAGCAATAG
85205702 CGCTAAAAAC
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.42, C:0.15, G:0.17, T:0.26
Consensus pattern (41 bp):
AAAAACTGAGCAATAGAGGTATTTGTGTTCAAAACACCACT
Found at i:85205791 original size:41 final size:40
Alignment explanation
Indices: 85205704--85205781 Score: 102
Period size: 40 Copynumber: 1.9 Consensus size: 40
85205694 AGCAATAGCG
* * *
85205704 CTAAAAACTGAGAAATGGCGGCGTTTTTGTCCAAACACCA
1 CTAAAAACTAAGAAATAGCGGCGTTTTTGTACAAACACCA
*
85205744 CTAAAAACTAAGCAATAGCGGCGTTTTTTGTTACAAAC
1 CTAAAAACTAAGAAATAGCGGCG-TTTTTG-TACAAAC
85205782 GCCGTAAAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
40 20 0.62
41 6 0.19
42 6 0.19
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.26
Consensus pattern (40 bp):
CTAAAAACTAAGAAATAGCGGCGTTTTTGTACAAACACCA
Found at i:85206132 original size:21 final size:23
Alignment explanation
Indices: 85206084--85206125 Score: 61
Period size: 21 Copynumber: 1.9 Consensus size: 23
85206074 TATGGGTTTC
*
85206084 TCTAAACCCCTAAACCTTAAACA
1 TCTAAACCCCTAAACCCTAAACA
85206107 T-TAAA-CCCTAAACCCTAAA
1 TCTAAACCCCTAAACCCTAAA
85206126 TTCTAAAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 13 0.72
22 4 0.22
23 1 0.06
ACGTcount: A:0.45, C:0.33, G:0.00, T:0.21
Consensus pattern (23 bp):
TCTAAACCCCTAAACCCTAAACA
Found at i:85206611 original size:21 final size:20
Alignment explanation
Indices: 85206586--85206662 Score: 70
Period size: 21 Copynumber: 3.8 Consensus size: 20
85206576 GTACATGGAA
85206586 TTAGGGTTTAAGGTTTAGAAT
1 TTAGGGTTTAAGGTTTAG-AT
*
85206607 TTA-GGTTTAAGGTTTAGGGT
1 TTAGGGTTTAAGGTTTA-GAT
* *
85206627 ATT-GGGTTTATGGTTTAGTT
1 -TTAGGGTTTAAGGTTTAGAT
85206647 TATAGGGTTT-AGGTTT
1 T-TAGGGTTTAAGGTTT
85206663 TAAGGTATTT
Statistics
Matches: 47, Mismatches: 4, Indels: 11
0.76 0.06 0.18
Matches are distributed among these distances:
19 1 0.02
20 22 0.47
21 24 0.51
ACGTcount: A:0.21, C:0.00, G:0.31, T:0.48
Consensus pattern (20 bp):
TTAGGGTTTAAGGTTTAGAT
Found at i:85206682 original size:28 final size:27
Alignment explanation
Indices: 85206651--85206713 Score: 81
Period size: 28 Copynumber: 2.3 Consensus size: 27
85206641 TTAGTTTATA
**
85206651 GGGTTTAGGTTTTAAGGTATTTGGTATT
1 GGGTTTAGG-TTTAAGGTATCGGGTATT
*
85206679 GGGTTTAAGGTTTAGGGTATCGGGTATT
1 GGGTTT-AGGTTTAAGGTATCGGGTATT
85206707 GGGTTTA
1 GGGTTTA
85206714 CAAATTAATT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
27 1 0.03
28 27 0.87
29 3 0.10
ACGTcount: A:0.17, C:0.02, G:0.37, T:0.44
Consensus pattern (27 bp):
GGGTTTAGGTTTAAGGTATCGGGTATT
Found at i:85207387 original size:115 final size:116
Alignment explanation
Indices: 85207152--85207409 Score: 315
Period size: 115 Copynumber: 2.2 Consensus size: 116
85207142 ACGTTTGTTA
* *
85207152 AAAAACACCACAATAGATTAGCATTAGCGGCGTTTGTTAAAAAACGCCCCAAAAAGAAATAATAA
1 AAAAACACCGCAATAGATTAGCATTAGCGGCGTTTGTTAAAAAACGCCACAAAAAGAAATAATAA
** *
85207217 AATGACGCCATCTTTTGATGCATTTTTAGTGGCTTTAGCAGCGCTAGGGTG
66 AACCACGCCATCTTTTGATGCATCTTTAGTGGCTTTAGCAGCGCTAGGGTG
* * * ** * *
85207268 -AAAACCCCGCAATAGATTAGCATTAGTGGCGTTTTTTTTAAAACGCCACAAAAA-CAATATTAA
1 AAAAACACCGCAATAGATTAGCATTAGCGGCGTTTGTTAAAAAACGCCACAAAAAGAAATAATAA
* * * *
85207331 AACCACGCCGT-TTTGTGATGCATCTTTGGTGGCTTTAGCGGGGCTAGGGTG
66 AACCACGCCATCTTT-TGATGCATCTTTAGTGGCTTTAGCAGCGCTAGGGTG
***
85207382 AAAAACGTTGCAATAGATTAGCATTAGC
1 AAAAACACCGCAATAGATTAGCATTAGC
85207410 CCGCAAAAAA
Statistics
Matches: 120, Mismatches: 20, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
113 3 0.03
114 47 0.39
115 70 0.58
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (116 bp):
AAAAACACCGCAATAGATTAGCATTAGCGGCGTTTGTTAAAAAACGCCACAAAAAGAAATAATAA
AACCACGCCATCTTTTGATGCATCTTTAGTGGCTTTAGCAGCGCTAGGGTG
Found at i:85210325 original size:9 final size:9
Alignment explanation
Indices: 85210313--85210576 Score: 115
Period size: 9 Copynumber: 30.0 Consensus size: 9
85210303 TATATCATAT
85210313 CATAACTTA
1 CATAACTTA
85210322 CATAACTTA
1 CATAACTTA
* *
85210331 TATACCTTA
1 CATAACTTA
85210340 CATAA--TA
1 CATAACTTA
*
85210347 CATAA-ATA
1 CATAACTTA
* *
85210355 TATATCATATA
1 CATAAC-T-TA
85210366 -ATAACTTA
1 CATAACTTA
85210374 CATAACTTA
1 CATAACTTA
*
85210383 CAAAACTTA
1 CATAACTTA
85210392 CATAA--TA
1 CATAACTTA
*
85210399 CATAA-ATA
1 CATAACTTA
* *
85210407 TATATCATATA
1 CATAAC-T-TA
85210418 -ATAACTTA
1 CATAACTTA
*
85210426 CATAA-ATA
1 CATAACTTA
* *
85210434 TATATCCTATA
1 CATA-ACT-TA
85210445 -ATAACTTA
1 CATAACTTA
85210453 CATAACTTA
1 CATAACTTA
85210462 CATAACTTA
1 CATAACTTA
**
85210471 TGTAA--TA
1 CATAACTTA
*
85210478 CATAA-ATA
1 CATAACTTA
* ** *
85210486 TATTTCATA
1 CATAACTTA
*
85210495 TCATAATTTA
1 -CATAACTTA
85210505 CATAACTTA
1 CATAACTTA
*
85210514 CATACCTTA
1 CATAACTTA
*
85210523 CATAAATT-
1 CATAACTTA
* * *
85210531 TATATCATA
1 CATAACTTA
85210540 TCATAACTTA
1 -CATAACTTA
85210550 CATAACTTA
1 CATAACTTA
*
85210559 CAAAACTTA
1 CATAACTTA
*
85210568 CTTAACTTA
1 CATAACTTA
85210577 TGTAATACAT
Statistics
Matches: 191, Mismatches: 45, Indels: 38
0.70 0.16 0.14
Matches are distributed among these distances:
7 19 0.10
8 29 0.15
9 116 0.61
10 21 0.11
11 6 0.03
ACGTcount: A:0.47, C:0.17, G:0.00, T:0.36
Consensus pattern (9 bp):
CATAACTTA
Found at i:85210357 original size:52 final size:52
Alignment explanation
Indices: 85210297--85210430 Score: 232
Period size: 52 Copynumber: 2.6 Consensus size: 52
85210287 ATCTTAATGT
* * * *
85210297 TAAATATATATCATATCATAACTTACATAACTTATATACCTTACATAATACA
1 TAAATATATATCATATAATAACTTACATAACTTACAAAACTTACATAATACA
85210349 TAAATATATATCATATAATAACTTACATAACTTACAAAACTTACATAATACA
1 TAAATATATATCATATAATAACTTACATAACTTACAAAACTTACATAATACA
85210401 TAAATATATATCATATAATAACTTACATAA
1 TAAATATATATCATATAATAACTTACATAA
85210431 ATATATATCC
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 78 1.00
ACGTcount: A:0.50, C:0.15, G:0.00, T:0.35
Consensus pattern (52 bp):
TAAATATATATCATATAATAACTTACATAACTTACAAAACTTACATAATACA
Found at i:85210435 original size:79 final size:79
Alignment explanation
Indices: 85210345--85210509 Score: 267
Period size: 79 Copynumber: 2.1 Consensus size: 79
85210335 CCTTACATAA
85210345 TACATAAATATATATCATATAATAACTTACATAACTTACAAAACTTACATAATACATAAATATAT
1 TACATAAATATATATCATATAATAACTTACATAACTTACAAAACTTACATAATACATAAATATAT
85210410 ATCATATAATAACT
66 ATCATATAATAACT
* * **
85210424 TACATAAATATATATCCTATAATAACTTACATAACTTACATAACTTATGTAATACATAAATATAT
1 TACATAAATATATATCATATAATAACTTACATAACTTACAAAACTTACATAATACATAAATATAT
* * *
85210489 TTCATATCATAATT
66 ATCATATAATAACT
85210503 TACATAA
1 TACATAA
85210510 CTTACATACC
Statistics
Matches: 79, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
79 79 1.00
ACGTcount: A:0.49, C:0.14, G:0.01, T:0.36
Consensus pattern (79 bp):
TACATAAATATATATCATATAATAACTTACATAACTTACAAAACTTACATAATACATAAATATAT
ATCATATAATAACT
Found at i:85210545 original size:79 final size:79
Alignment explanation
Indices: 85210345--85210549 Score: 218
Period size: 79 Copynumber: 2.6 Consensus size: 79
85210335 CCTTACATAA
* * * * * **
85210345 TACATAAATATATATCATATAATAACTTACATAACTTACAAAACTTACATAATACATAAATATAT
1 TACATAAATACATATCCTATAATAAATTACATAACATACATAACTTATGTAATACATAAATATAT
85210410 ATCATATAATAACT
66 ATCATATAATAACT
* * *
85210424 TACATAAATATATATCCTATAATAACTTACATAACTTACATAACTTATGTAATACATAAATATAT
1 TACATAAATACATATCCTATAATAAATTACATAACATACATAACTTATGTAATACATAAATATAT
* * *
85210489 TTCATATCATAATT
66 ATCATATAATAACT
* * *
85210503 TACATAACTTACATA-CCT-TACATAAATT-TATATCATATCATAACTTA
1 TACATAA-ATACATATCCTATA-ATAAATTACATAACATA-CATAACTTA
85210550 CATAACTTAC
Statistics
Matches: 110, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
78 8 0.07
79 97 0.88
80 5 0.05
ACGTcount: A:0.47, C:0.15, G:0.00, T:0.37
Consensus pattern (79 bp):
TACATAAATACATATCCTATAATAAATTACATAACATACATAACTTATGTAATACATAAATATAT
ATCATATAATAACT
Found at i:85212967 original size:23 final size:23
Alignment explanation
Indices: 85212941--85212986 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
85212931 TGAGAAAGTA
85212941 CATGATCGAGCCACTTTGACTTT
1 CATGATCGAGCCACTTTGACTTT
*
85212964 CATGATCGAGCCGCTTTGACTTT
1 CATGATCGAGCCACTTTGACTTT
85212987 ATGCAATTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.20, C:0.26, G:0.20, T:0.35
Consensus pattern (23 bp):
CATGATCGAGCCACTTTGACTTT
Found at i:85216170 original size:24 final size:21
Alignment explanation
Indices: 85216125--85216175 Score: 66
Period size: 21 Copynumber: 2.3 Consensus size: 21
85216115 TAGAGCGGAT
*
85216125 GCAGCAGCGAGGGAGACAGTA
1 GCAGCAGCGAGGGAGAAAGTA
85216146 GCAGCAGCGAGGGAGGCAAAGGTA
1 GCAGCAGCGAGGGA-G-AAA-GTA
85216170 GCAGCA
1 GCAGCA
85216176 ATGGCAGTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
21 14 0.54
22 1 0.04
23 2 0.08
24 9 0.35
ACGTcount: A:0.33, C:0.20, G:0.43, T:0.04
Consensus pattern (21 bp):
GCAGCAGCGAGGGAGAAAGTA
Found at i:85216451 original size:33 final size:33
Alignment explanation
Indices: 85216409--85216489 Score: 103
Period size: 31 Copynumber: 2.5 Consensus size: 33
85216399 TTAGATTAAA
* * *
85216409 TGTTTTTGGTTGTATTTTTTATGCTACATTTGT
1 TGTTTTTGGTTGGATTTTTCATGCTACATTTGC
*
85216442 TGTTTTTGGTTGGA--TTTCATGCTATATTTGC
1 TGTTTTTGGTTGGATTTTTCATGCTACATTTGC
*
85216473 TATTTTTGGTTGGATTT
1 TGTTTTTGGTTGGATTT
85216490 AATGCAGGAA
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
31 27 0.66
33 14 0.34
ACGTcount: A:0.12, C:0.06, G:0.21, T:0.60
Consensus pattern (33 bp):
TGTTTTTGGTTGGATTTTTCATGCTACATTTGC
Done.