Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 271 of 318
Found at i:85948241 original size:24 final size:23
Alignment explanation
Indices: 85948164--85948242 Score: 61
Period size: 24 Copynumber: 3.2 Consensus size: 23
85948154 CATAATATGG
*
85948164 TATTTATAATTAATTAATTTAATAATA
1 TATTAATAATTAA--AATTTAA-AA-A
* *
85948191 TATTTAATAATT-AAATTATATATA
1 TA-TTAATAATTAAAATT-TAAAAA
85948215 TATTACATAATTAAAATTTAAAAA
1 TATTA-ATAATTAAAATTTAAAAA
85948239 TATT
1 TATT
85948243 TTAGATTTTA
Statistics
Matches: 43, Mismatches: 5, Indels: 11
0.73 0.08 0.19
Matches are distributed among these distances:
23 3 0.07
24 17 0.40
25 10 0.23
26 2 0.05
27 3 0.07
28 8 0.19
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (23 bp):
TATTAATAATTAAAATTTAAAAA
Found at i:85957311 original size:12 final size:12
Alignment explanation
Indices: 85957294--85957326 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
85957284 TTCCCTGTAA
85957294 AATAGTAAAAAT
1 AATAGTAAAAAT
*
85957306 AATAGTAAGAAT
1 AATAGTAAAAAT
85957318 AATAGTAAA
1 AATAGTAAA
85957327 GGGGAAGTAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.64, C:0.00, G:0.12, T:0.24
Consensus pattern (12 bp):
AATAGTAAAAAT
Found at i:85958257 original size:10 final size:10
Alignment explanation
Indices: 85958236--85958297 Score: 63
Period size: 10 Copynumber: 6.1 Consensus size: 10
85958226 AATAAAATTC
85958236 TAAACGATAAA
1 TAAA-GATAAA
85958247 TACAA-ATAAA
1 TA-AAGATAAA
*
85958257 TAAAGATAAT
1 TAAAGATAAA
85958267 TAAAGATAAA
1 TAAAGATAAA
* *
85958277 CAAATATAAA
1 TAAAGATAAA
*
85958287 TAAAAATAAA
1 TAAAGATAAA
85958297 T
1 T
85958298 CCTAAAATTT
Statistics
Matches: 43, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
9 2 0.05
10 37 0.86
11 2 0.05
12 2 0.05
ACGTcount: A:0.68, C:0.05, G:0.05, T:0.23
Consensus pattern (10 bp):
TAAAGATAAA
Found at i:85958276 original size:30 final size:31
Alignment explanation
Indices: 85958236--85958295 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 31
85958226 AATAAAATTC
* *
85958236 TAAACGATAAATACAA-ATAAATAAAGATAAT
1 TAAACGATAAACA-AATATAAATAAAAATAAT
85958267 TAAA-GATAAACAAATATAAATAAAAATAA
1 TAAACGATAAACAAATATAAATAAAAATAA
85958296 ATCCTAAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
29 2 0.08
30 20 0.77
31 4 0.15
ACGTcount: A:0.68, C:0.05, G:0.05, T:0.22
Consensus pattern (31 bp):
TAAACGATAAACAAATATAAATAAAAATAAT
Found at i:85958670 original size:16 final size:16
Alignment explanation
Indices: 85958649--85958679 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
85958639 TTCACAATTA
*
85958649 TGTCTTTTATATTTTC
1 TGTCTTCTATATTTTC
85958665 TGTCTTCTATATTTT
1 TGTCTTCTATATTTT
85958680 ACATGCATAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.13, C:0.13, G:0.06, T:0.68
Consensus pattern (16 bp):
TGTCTTCTATATTTTC
Found at i:85960141 original size:24 final size:25
Alignment explanation
Indices: 85960105--85960154 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
85960095 TAATTATTCC
*
85960105 AAAAATAATATT-ATTTTAATAGTTT
1 AAAAATAATATTAAATTTAATA-TTT
*
85960130 AAAATTAA-ATTAAATTTAATATTT
1 AAAAATAATATTAAATTTAATATTT
85960154 A
1 A
85960155 TCTTAATAGT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
24 7 0.32
25 15 0.68
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (25 bp):
AAAAATAATATTAAATTTAATATTT
Found at i:85960265 original size:61 final size:59
Alignment explanation
Indices: 85960197--85960311 Score: 144
Period size: 59 Copynumber: 1.9 Consensus size: 59
85960187 GTGATTATTG
* * *
85960197 TAATATTAAA-TTAAATTAA-ATTTTGATCTTATAATAAATATTTTATTATTTTAATAAGATT
1 TAATATTAAATTTAAACTAATA-TTT-ATC-T-TAATAAATATTATATTAATTTAATAAGATT
*
85960258 TAATATTAAATTTAACCTAATATTTATCTTAATAAATATTATATTAATTTAATA
1 TAATATTAAATTTAAACTAATATTTATCTTAATAAATATTATATTAATTTAATA
85960312 TTAAAGTGAT
Statistics
Matches: 48, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
59 23 0.48
60 1 0.02
61 13 0.27
62 10 0.21
63 1 0.02
ACGTcount: A:0.45, C:0.03, G:0.02, T:0.50
Consensus pattern (59 bp):
TAATATTAAATTTAAACTAATATTTATCTTAATAAATATTATATTAATTTAATAAGATT
Found at i:85968253 original size:40 final size:39
Alignment explanation
Indices: 85968088--85968261 Score: 136
Period size: 40 Copynumber: 4.4 Consensus size: 39
85968078 AAATTGAATG
* * *
85968088 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
85968128 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
85968168 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
85968208 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
*
85968247 GATATCCGGGTTAAG
1 -ATATCCGGGCTAAG
85968262 TCCGTAGGCC
Statistics
Matches: 105, Mismatches: 24, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 96 0.91
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:85976366 original size:40 final size:39
Alignment explanation
Indices: 85976201--85976384 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
85976191 AAATTGAATG
* * *
85976201 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
85976241 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
85976281 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
85976321 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
85976360 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
85976385 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:85976409 original size:80 final size:81
Alignment explanation
Indices: 85976241--85976429 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
85976231 GCTGGAAATT
* * * *
85976241 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
85976306 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
85976322 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
85976385 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
85976401 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
85976430 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:85981939 original size:10 final size:10
Alignment explanation
Indices: 85981924--85981957 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
85981914 TCTTAAATAA
85981924 AAAAAAAAAT
1 AAAAAAAAAT
*
85981934 AAAAAAAAAG
1 AAAAAAAAAT
*
85981944 AAAAAACAAT
1 AAAAAAAAAT
85981954 AAAA
1 AAAA
85981958 TAGAAAAATA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.88, C:0.03, G:0.03, T:0.06
Consensus pattern (10 bp):
AAAAAAAAAT
Found at i:85981941 original size:16 final size:16
Alignment explanation
Indices: 85981917--85981969 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
85981907 AGATTTTTCT
*
85981917 TAAATAAAAAAAAAAA
1 TAAAAAAAAAAAAAAA
85981933 TAAAAAAAAAGAAAAAA
1 TAAAAAAAAA-AAAAAA
* * * *
85981950 CAATAAAATAGAAAAA
1 TAAAAAAAAAAAAAAA
85981966 TAAA
1 TAAA
85981970 CCAAAAAAGG
Statistics
Matches: 29, Mismatches: 7, Indels: 2
0.76 0.18 0.05
Matches are distributed among these distances:
16 16 0.55
17 13 0.45
ACGTcount: A:0.83, C:0.02, G:0.04, T:0.11
Consensus pattern (16 bp):
TAAAAAAAAAAAAAAA
Found at i:85981994 original size:33 final size:33
Alignment explanation
Indices: 85981919--85981985 Score: 91
Period size: 33 Copynumber: 2.0 Consensus size: 33
85981909 ATTTTTCTTA
*
85981919 AATAAAA-AAAAAAATAAAAAAAAAGAAAAAAC
1 AATAAAATAGAAAAATAAAAAAAAAGAAAAAAC
85981951 AATAAAATAGAAAAATAAACCAAAAAAGGAAAAAA
1 AATAAAATAGAAAAATAAA--AAAAAA-GAAAAAA
85981986 AAACATAGAG
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
32 7 0.23
33 10 0.33
35 6 0.20
36 7 0.23
ACGTcount: A:0.82, C:0.04, G:0.06, T:0.07
Consensus pattern (33 bp):
AATAAAATAGAAAAATAAAAAAAAAGAAAAAAC
Found at i:85982451 original size:42 final size:42
Alignment explanation
Indices: 85982392--85982603 Score: 257
Period size: 42 Copynumber: 5.3 Consensus size: 42
85982382 AAGGAAAGCA
* *
85982392 TTCATTGTATTTAGAGGCCTAGGTGTGAAGGTCCATTTACTT
1 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTT
* *
85982434 TTCATTGCATTTAGAGGCAC-AAGTGCGGAGGTCCATTTACTT
1 TTCATTGCATTTAGAGGC-CTAGGTGTGGAGGTCCATTTACTT
85982476 TTCATTGCATTTAGAGGCCTAGGTGT---GG-------ACTT
1 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTT
*
85982508 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCTATTTACTT
1 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTT
* * *
85982550 TTCATTGCATTTAGAGGCCCAGGTGTGGAGATCTATTTACTTT
1 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTAC-TT
85982593 TTCATTGCATT
1 TTCATTGCATT
85982604 GTATATGAAG
Statistics
Matches: 149, Mismatches: 8, Indels: 25
0.82 0.04 0.14
Matches are distributed among these distances:
32 30 0.20
35 2 0.01
39 2 0.01
41 1 0.01
42 100 0.67
43 14 0.09
ACGTcount: A:0.21, C:0.16, G:0.24, T:0.39
Consensus pattern (42 bp):
TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTT
Found at i:85982508 original size:32 final size:32
Alignment explanation
Indices: 85982472--85982536 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
85982462 AGGTCCATTT
85982472 ACTTTTCATTGCATTTAGAGGCCTAGGTGTGG
1 ACTTTTCATTGCATTTAGAGGCCTAGGTGTGG
85982504 ACTTTTCATTGCATTTAGAGGCCTAGGTGTGG
1 ACTTTTCATTGCATTTAGAGGCCTAGGTGTGG
85982536 A
1 A
85982537 GGTCTATTTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.20, C:0.15, G:0.28, T:0.37
Consensus pattern (32 bp):
ACTTTTCATTGCATTTAGAGGCCTAGGTGTGG
Found at i:85982529 original size:116 final size:117
Alignment explanation
Indices: 85982392--85982603 Score: 345
Period size: 116 Copynumber: 1.8 Consensus size: 117
85982382 AAGGAAAGCA
*
85982392 TTCATTGTATTTAGAGGCCTAGGTGTGAAGGTCCATTTACTTTTCATTGCATTTAGAGGCACAAG
1 TTCATTGCATTTAGAGGCCTAGGTGTGAAGGTCCATTTACTTTTCATTGCATTTAGAGGCACAAG
*
85982457 TGCGGAGGTCCATTTAC-TTTTCATTGCATTTAGAGGCCTAGGTGTGGACTT
66 TGCGGAGATCCATTTACTTTTTCATTGCATTTAGAGGCCTAGGTGTGGACTT
* * * *
85982508 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCTATTTACTTTTCATTGCATTTAGAGGCCCAGG
1 TTCATTGCATTTAGAGGCCTAGGTGTGAAGGTCCATTTACTTTTCATTGCATTTAGAGGCACAAG
* *
85982573 TGTGGAGATCTATTTACTTTTTCATTGCATT
66 TGCGGAGATCCATTTACTTTTTCATTGCATT
85982604 GTATATGAAG
Statistics
Matches: 87, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
116 74 0.85
117 13 0.15
ACGTcount: A:0.21, C:0.16, G:0.24, T:0.39
Consensus pattern (117 bp):
TTCATTGCATTTAGAGGCCTAGGTGTGAAGGTCCATTTACTTTTCATTGCATTTAGAGGCACAAG
TGCGGAGATCCATTTACTTTTTCATTGCATTTAGAGGCCTAGGTGTGGACTT
Found at i:85982551 original size:74 final size:74
Alignment explanation
Indices: 85982430--85982578 Score: 246
Period size: 74 Copynumber: 2.0 Consensus size: 74
85982420 AGGTCCATTT
85982430 ACTTTTCATTGCATTTAGAGGCACAAGTGCGGAGGTCCATTTACTTTTCATTGCATTTAGAGGCC
1 ACTTTTCATTGCATTTAGAGGCACAAGTGCGGAGGTCCATTTACTTTTCATTGCATTTAGAGGCC
*
85982495 TAGGTGTGG
66 CAGGTGTGG
* * *
85982504 ACTTTTCATTGCATTTAGAGGC-CTAGGTGTGGAGGTCTATTTACTTTTCATTGCATTTAGAGGC
1 ACTTTTCATTGCATTTAGAGGCAC-AAGTGCGGAGGTCCATTTACTTTTCATTGCATTTAGAGGC
85982568 CCAGGTGTGG
65 CCAGGTGTGG
85982578 A
1 A
85982579 GATCTATTTA
Statistics
Matches: 70, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
73 1 0.01
74 69 0.99
ACGTcount: A:0.21, C:0.17, G:0.26, T:0.36
Consensus pattern (74 bp):
ACTTTTCATTGCATTTAGAGGCACAAGTGCGGAGGTCCATTTACTTTTCATTGCATTTAGAGGCC
CAGGTGTGG
Found at i:85985095 original size:39 final size:39
Alignment explanation
Indices: 85985038--85985149 Score: 170
Period size: 39 Copynumber: 2.9 Consensus size: 39
85985028 AACACACCAC
85985038 CACAGCCTGCTAGGCACATAGCCCGAATAATCACCGACA
1 CACAGCCTGCTAGGCACATAGCCCGAATAATCACCGACA
* * * *
85985077 CACAGCTTGTTAGACACATAGCCCGAATAATCACCGGCA
1 CACAGCCTGCTAGGCACATAGCCCGAATAATCACCGACA
* *
85985116 CACAACCTGCTAGGCACATAGCCCAAATAATCAC
1 CACAGCCTGCTAGGCACATAGCCCGAATAATCAC
85985150 TAGGACACAG
Statistics
Matches: 64, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 64 1.00
ACGTcount: A:0.35, C:0.34, G:0.16, T:0.15
Consensus pattern (39 bp):
CACAGCCTGCTAGGCACATAGCCCGAATAATCACCGACA
Found at i:85985158 original size:39 final size:37
Alignment explanation
Indices: 85985038--85985170 Score: 140
Period size: 39 Copynumber: 3.4 Consensus size: 37
85985028 AACACACCAC
* *
85985038 CACAGCCTGCTAGGCACATAGCCCGAATAATCACCGA
1 CACAACCTGCTAGGCACATAGCCCGAATAATCACGGA
* * *
85985075 CACACAGCTTGTTAGACACATAGCCCGAATAATCACCGGCA
1 CACA-A-CCTGCTAGGCACATAGCCCGAATAATCA-CGG-A
*
85985116 CACAACCTGCTAGGCACATAGCCCAAATAATCACTAGGA
1 CACAACCTGCTAGGCACATAGCCCGAATAATCAC--GGA
* *
85985155 CACAGCCTACTAGGCA
1 CACAACCTGCTAGGCA
85985171 AATAATCATC
Statistics
Matches: 79, Mismatches: 11, Indels: 10
0.79 0.11 0.10
Matches are distributed among these distances:
37 4 0.05
38 1 0.01
39 64 0.81
40 5 0.06
41 5 0.06
ACGTcount: A:0.35, C:0.33, G:0.17, T:0.15
Consensus pattern (37 bp):
CACAACCTGCTAGGCACATAGCCCGAATAATCACGGA
Found at i:85989657 original size:18 final size:18
Alignment explanation
Indices: 85989634--85989669 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
85989624 ATGTGGCCTA
85989634 CCCGTGTAAGCCCACATG
1 CCCGTGTAAGCCCACATG
**
85989652 CCCGTGTGGGCCCACATG
1 CCCGTGTAAGCCCACATG
85989670 GCCCAAATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.17, C:0.39, G:0.28, T:0.17
Consensus pattern (18 bp):
CCCGTGTAAGCCCACATG
Found at i:85994895 original size:40 final size:40
Alignment explanation
Indices: 85994858--85995043 Score: 200
Period size: 40 Copynumber: 4.7 Consensus size: 40
85994848 GCTACTCGTT
*
85994858 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* * *
85994898 CAGATGCCTTCGGGACTTAACTCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
85994938 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* ** * * * *
85994978 CAAATGTCTT-TAGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
85995019 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
85995044 CATCATTCGA
Statistics
Matches: 124, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
39 3 0.02
40 109 0.88
41 12 0.10
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.27
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:86000170 original size:17 final size:18
Alignment explanation
Indices: 86000121--86000171 Score: 95
Period size: 18 Copynumber: 2.9 Consensus size: 18
86000111 CATGTGGCCT
86000121 GCCCGTGTGGGCCCACAC
1 GCCCGTGTGGGCCCACAC
86000139 GCCCGTGTGGGCCCACAC
1 GCCCGTGTGGGCCCACAC
86000157 GCCCGTGT-GGCCCAC
1 GCCCGTGTGGGCCCAC
86000172 GCGGCCAAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
17 7 0.21
18 26 0.79
ACGTcount: A:0.10, C:0.45, G:0.33, T:0.12
Consensus pattern (18 bp):
GCCCGTGTGGGCCCACAC
Found at i:86002322 original size:5 final size:5
Alignment explanation
Indices: 86002312--86002342 Score: 55
Period size: 5 Copynumber: 6.4 Consensus size: 5
86002302 TTATGTTTTA
86002312 ATTAT ATTAT ATTAT ATTAT ATTAT A-TAT AT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT AT
86002343 AAACTAAAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.16
5 21 0.84
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (5 bp):
ATTAT
Found at i:86003639 original size:15 final size:15
Alignment explanation
Indices: 86003619--86003675 Score: 80
Period size: 15 Copynumber: 3.9 Consensus size: 15
86003609 CGATGAATTT
*
86003619 ATTGAATTTATATTG
1 ATTGAAATTATATTG
* *
86003634 ATTGAAATTATTTTA
1 ATTGAAATTATATTG
86003649 ATTGAAATTATATTG
1 ATTGAAATTATATTG
86003664 ATTG-AATTATAT
1 ATTGAAATTATAT
86003676 AATATATATG
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
14 8 0.22
15 29 0.78
ACGTcount: A:0.39, C:0.00, G:0.11, T:0.51
Consensus pattern (15 bp):
ATTGAAATTATATTG
Found at i:86004109 original size:21 final size:21
Alignment explanation
Indices: 86004040--86004097 Score: 107
Period size: 21 Copynumber: 2.8 Consensus size: 21
86004030 CTTTATGTGC
86004040 CAGGCACCTCGTGTGTCGTAT
1 CAGGCACCTCGTGTGTCGTAT
*
86004061 CAAGCACCTCGTGTGTCGTAT
1 CAGGCACCTCGTGTGTCGTAT
86004082 CAGGCACCTCGTGTGT
1 CAGGCACCTCGTGTGT
86004098 TATTTTAGGC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.16, C:0.29, G:0.28, T:0.28
Consensus pattern (21 bp):
CAGGCACCTCGTGTGTCGTAT
Found at i:86005333 original size:44 final size:44
Alignment explanation
Indices: 86005283--86005392 Score: 139
Period size: 44 Copynumber: 2.5 Consensus size: 44
86005273 ACGGTGTAAC
*
86005283 AGCCAACACCAATACATAGTACCAGCTTAATACAAATGGCACAT
1 AGCCAACACCAATACATAGTACCAGCTGAATACAAATGGCACAT
* ** * * *
86005327 AGCCAACATCTGTGCATAGTACCTGCTGAATATAAATGGCACAT
1 AGCCAACACCAATACATAGTACCAGCTGAATACAAATGGCACAT
* *
86005371 AGCCAAAACCGATACATAGTAC
1 AGCCAACACCAATACATAGTAC
86005393 TGTTGAATAT
Statistics
Matches: 54, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
44 54 1.00
ACGTcount: A:0.40, C:0.25, G:0.15, T:0.20
Consensus pattern (44 bp):
AGCCAACACCAATACATAGTACCAGCTGAATACAAATGGCACAT
Found at i:86007154 original size:40 final size:40
Alignment explanation
Indices: 86007074--86007159 Score: 100
Period size: 40 Copynumber: 2.1 Consensus size: 40
86007064 AATTATGGGA
** *
86007074 TACTGAATATTGTTTTGAATACCGAATTGAACTATGAAAT
1 TACTGAATATTGTTACGAATACCGAATTGAACTATAAAAT
* * * *
86007114 TACTGAATATTGTTACGTATACTGTATTGAACTGTAAAAT
1 TACTGAATATTGTTACGAATACCGAATTGAACTATAAAAT
*
86007154 TTCTGA
1 TACTGA
86007160 TGAAACGAAT
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.35, C:0.10, G:0.15, T:0.40
Consensus pattern (40 bp):
TACTGAATATTGTTACGAATACCGAATTGAACTATAAAAT
Found at i:86007421 original size:45 final size:45
Alignment explanation
Indices: 86007371--86007473 Score: 154
Period size: 45 Copynumber: 2.3 Consensus size: 45
86007361 GGCTACTGTA
*
86007371 ACTGTTACCGTTACTATTACTGATTT-GACACTTTGTGTGTCGAAT
1 ACTGTTACCGTTACTATTACAGATTTAG-CACTTTGTGTGTCGAAT
* *
86007416 ACTGTTACCGTTACTGTTACAGATTTAGCACTTTGTGTGTTGAAT
1 ACTGTTACCGTTACTATTACAGATTTAGCACTTTGTGTGTCGAAT
*
86007461 ACTGTTACTGTTA
1 ACTGTTACCGTTA
86007474 TTGCTACCGT
Statistics
Matches: 53, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
45 52 0.98
46 1 0.02
ACGTcount: A:0.22, C:0.17, G:0.18, T:0.43
Consensus pattern (45 bp):
ACTGTTACCGTTACTATTACAGATTTAGCACTTTGTGTGTCGAAT
Found at i:86012249 original size:12 final size:12
Alignment explanation
Indices: 86012232--86012262 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
86012222 GAAGCAGGGG
86012232 AGAAAAAGAGAA
1 AGAAAAAGAGAA
*
86012244 AGAAAAAGGGAA
1 AGAAAAAGAGAA
86012256 AGAAAAA
1 AGAAAAA
86012263 TAAAAGAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (12 bp):
AGAAAAAGAGAA
Found at i:86013041 original size:40 final size:40
Alignment explanation
Indices: 86012972--86013052 Score: 108
Period size: 40 Copynumber: 2.0 Consensus size: 40
86012962 AATTATGGGA
** *
86012972 TACTGAATATTGTTTTGAATACCGAATTGAACTGTGAAAT
1 TACTGAATATTGTTACGAATACCGAATTGAACTGTAAAAT
* * *
86013012 TACTGAATATTGTTACGTATACTGTATTGAACTGTAAAAT
1 TACTGAATATTGTTACGAATACCGAATTGAACTGTAAAAT
86013052 T
1 T
86013053 TTTGATGAAA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.35, C:0.10, G:0.16, T:0.40
Consensus pattern (40 bp):
TACTGAATATTGTTACGAATACCGAATTGAACTGTAAAAT
Found at i:86016239 original size:13 final size:13
Alignment explanation
Indices: 86016221--86016250 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
86016211 TTTTGGTTTA
*
86016221 ATTTTCTATTTTT
1 ATTTTCTATTTTG
86016234 ATTTTCTATTTTG
1 ATTTTCTATTTTG
86016247 ATTT
1 ATTT
86016251 AATCCCCCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.17, C:0.07, G:0.03, T:0.73
Consensus pattern (13 bp):
ATTTTCTATTTTG
Found at i:86016444 original size:41 final size:41
Alignment explanation
Indices: 86016387--86016464 Score: 147
Period size: 41 Copynumber: 1.9 Consensus size: 41
86016377 TATAATTTCG
*
86016387 ATTTTAGAGGTAAGAATTTTATATTTGATGGATTCGACTCA
1 ATTTTAAAGGTAAGAATTTTATATTTGATGGATTCGACTCA
86016428 ATTTTAAAGGTAAGAATTTTATATTTGATGGATTCGA
1 ATTTTAAAGGTAAGAATTTTATATTTGATGGATTCGA
86016465 TACCCATCAC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.33, C:0.05, G:0.19, T:0.42
Consensus pattern (41 bp):
ATTTTAAAGGTAAGAATTTTATATTTGATGGATTCGACTCA
Found at i:86017257 original size:37 final size:41
Alignment explanation
Indices: 86017182--86017258 Score: 99
Period size: 37 Copynumber: 2.0 Consensus size: 41
86017172 AATATAATAA
*
86017182 TTTAAATATTTTATTTTATAACAAAATTAAAAGATAATTTAT
1 TTTAAATATTATATTTTATAACAAAATT-AAAGATAATTTAT
*
86017224 TTTAAATA-TATATTTT-TAA-AAAATT-AAGTTAATTT
1 TTTAAATATTATATTTTATAACAAAATTAAAGATAATTT
86017259 TTTCAACATT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
37 9 0.27
39 6 0.18
40 3 0.09
41 7 0.21
42 8 0.24
ACGTcount: A:0.47, C:0.01, G:0.03, T:0.49
Consensus pattern (41 bp):
TTTAAATATTATATTTTATAACAAAATTAAAGATAATTTAT
Found at i:86024877 original size:40 final size:40
Alignment explanation
Indices: 86024799--86024882 Score: 114
Period size: 40 Copynumber: 2.1 Consensus size: 40
86024789 AATTATTATA
* **
86024799 TGATTGCACATACATGCCCCTGTTTGTACTTCGGTACCCC
1 TGATTGCACATACATGCCCCTGTTTATACTTCAATACCCC
* * *
86024839 TGATTGCATATACGTGCCCCTGTTTATACTTTAATACCCC
1 TGATTGCACATACATGCCCCTGTTTATACTTCAATACCCC
86024879 TGAT
1 TGAT
86024883 AGTACTTTGG
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.20, C:0.29, G:0.15, T:0.36
Consensus pattern (40 bp):
TGATTGCACATACATGCCCCTGTTTATACTTCAATACCCC
Found at i:86024939 original size:60 final size:61
Alignment explanation
Indices: 86024810--86024967 Score: 144
Period size: 60 Copynumber: 2.6 Consensus size: 61
86024800 GATTGCACAT
* * * * * * **
86024810 ACATGCCCCTGTTTGTACTTCGGTACCCCTGATTGCATATACGTGCCCCTGTTTATACTTT
1 ACATGCCCCTGATAGTACTTCGGTACCCCTAATTGCACATACGTGCCCCTGGTTACACTAC
* * * *
86024871 A-ATACCCCTGATAGTACTTTGGTGCCCTTAATTGCACATACGTGCCCCTGGTTACA-TAC
1 ACATGCCCCTGATAGTACTTCGGTACCCCTAATTGCACATACGTGCCCCTGGTTACACTAC
* *
86024930 ACATGCCCCTAATTA-TACTTCAGTACCCCTGAA-TGCAC
1 ACATGCCCCTGA-TAGTACTTCGGTACCCCT-AATTGCAC
86024968 TTCGTACCCC
Statistics
Matches: 76, Mismatches: 18, Indels: 7
0.75 0.18 0.07
Matches are distributed among these distances:
59 2 0.03
60 69 0.91
61 5 0.07
ACGTcount: A:0.22, C:0.30, G:0.15, T:0.32
Consensus pattern (61 bp):
ACATGCCCCTGATAGTACTTCGGTACCCCTAATTGCACATACGTGCCCCTGGTTACACTAC
Found at i:86024958 original size:20 final size:19
Alignment explanation
Indices: 86024935--86024987 Score: 54
Period size: 19 Copynumber: 2.7 Consensus size: 19
86024925 CATACACATG
86024935 CCCCTAATTATACTTCAGTA
1 CCCCTAATTATACTTC-GTA
**
86024955 CCCCTGAA-TGCACTTCGTA
1 CCCCT-AATTATACTTCGTA
*
86024974 CCCCTATTTATACT
1 CCCCTAATTATACT
86024988 CCGGTAACTC
Statistics
Matches: 26, Mismatches: 5, Indels: 5
0.72 0.14 0.14
Matches are distributed among these distances:
18 1 0.04
19 12 0.46
20 11 0.42
21 2 0.08
ACGTcount: A:0.25, C:0.34, G:0.08, T:0.34
Consensus pattern (19 bp):
CCCCTAATTATACTTCGTA
Found at i:86025770 original size:13 final size:13
Alignment explanation
Indices: 86025751--86025784 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
86025741 AGCACACAGA
86025751 CGTGTGACATAGC
1 CGTGTGACATAGC
*
86025764 TGTGTGACATAGC
1 CGTGTGACATAGC
86025777 CGTGTGAC
1 CGTGTGAC
86025785 CTTACTCAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.21, C:0.21, G:0.32, T:0.26
Consensus pattern (13 bp):
CGTGTGACATAGC
Found at i:86026061 original size:48 final size:48
Alignment explanation
Indices: 86025990--86026089 Score: 155
Period size: 48 Copynumber: 2.1 Consensus size: 48
86025980 TATGCATGTG
86025990 AATGATTAGTGTATGATAGTATTAACATGTTGAATAATATGAGGTTTA
1 AATGATTAGTGTATGATAGTATTAACATGTTGAATAATATGAGGTTTA
* * * * *
86026038 AATGATTGGTTTATGCTAGTATTACCATGTTGAATTATATGAGGTTTA
1 AATGATTAGTGTATGATAGTATTAACATGTTGAATAATATGAGGTTTA
86026086 AATG
1 AATG
86026090 TTTTCGATTG
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.34, C:0.04, G:0.21, T:0.41
Consensus pattern (48 bp):
AATGATTAGTGTATGATAGTATTAACATGTTGAATAATATGAGGTTTA
Found at i:86028126 original size:20 final size:20
Alignment explanation
Indices: 86028082--86028126 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
86028072 TCACAGGGGT
*
86028082 GTGTGTCTATCCACACGGGC
1 GTGTGTCTATCCACACAGGC
* *
86028102 ATGTGTCTATCCACATAGGC
1 GTGTGTCTATCCACACAGGC
86028122 GTGTG
1 GTGTG
86028127 AGGGGTTGCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.18, C:0.24, G:0.29, T:0.29
Consensus pattern (20 bp):
GTGTGTCTATCCACACAGGC
Found at i:86031394 original size:11 final size:11
Alignment explanation
Indices: 86031380--86031435 Score: 67
Period size: 11 Copynumber: 4.9 Consensus size: 11
86031370 AGATAAATAT
86031380 TATTTTATTAA
1 TATTTTATTAA
*
86031391 TATTTTAATAAGA
1 TATTTT-ATTA-A
*
86031404 TATTTTATTAT
1 TATTTTATTAA
*
86031415 TATTTTATTAT
1 TATTTTATTAA
86031426 TATTTTATTA
1 TATTTTATTA
86031436 GTATATAAAG
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
11 27 0.68
12 6 0.15
13 7 0.17
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:86033334 original size:46 final size:46
Alignment explanation
Indices: 86033282--86033647 Score: 439
Period size: 46 Copynumber: 8.0 Consensus size: 46
86033272 GCTTTCTGAA
** *
86033282 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * *
86033328 ATGAAAT-ATGTAAAACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGA-ATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** * * * *
86033374 ATGAAATGTGTAAAACCATGGATGAAAGATATCATGGCAACGTGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * *
86033420 ATGAAAAGAATAAGATCATGGTTGAGAGATACCATAGCAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** * * *
86033466 GGGAAATAAATAAGACCATGGTTGAAAGATACCATGGCAGCGTGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
86033512 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
86033558 ATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGTAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * * *
86033604 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATG
86033648 TCAAAGATAA
Statistics
Matches: 277, Mismatches: 40, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
45 1 0.00
46 276 1.00
ACGTcount: A:0.42, C:0.14, G:0.23, T:0.21
Consensus pattern (46 bp):
ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:86033530 original size:138 final size:138
Alignment explanation
Indices: 86033292--86033647 Score: 496
Period size: 138 Copynumber: 2.6 Consensus size: 138
86033282 ATGAAATGTG
* * * *
86033292 TAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATATGTAAAACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATAAGTAAGACCATGGTTGAAAGA
* ** *
86033357 TACCATGGCAACATGATATGAAATGTGTAAAACCATGGATGAAAGATATCATGGCAACGTGACAT
66 TACCATGGCAACATGACATGAAATGAATAAAACCATGGATGAAAGATACCATGGCAACGTGACAT
86033422 GAAAAGAA
131 GAAAAGAA
* * * * *
86033430 TAAGATCATGGTTGAGAGATACCATAGCAACATGACGGGAAATAAATAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATAAGTAAGACCATGGTTGAAAGA
* * * *
86033495 TACCATGGCAGCGTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGACAT
66 TACCATGGCAACATGACATGAAATGAATAAAACCATGGATGAAAGATACCATGGCAACGTGACAT
86033560 GAAAAGAA
131 GAAAAGAA
* * * *
86033568 TAAGACCATGGTTGAAAGATACCATGGTAACATGACAGAAAATGAGTAAGACCATAGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATAAGTAAGACCATGGTTGAAAGA
* * *
86033633 CACTATGGCATCATG
66 TACCATGGCAACATG
86033648 TCAAAGATAA
Statistics
Matches: 188, Mismatches: 30, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
138 188 1.00
ACGTcount: A:0.42, C:0.14, G:0.23, T:0.21
Consensus pattern (138 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATAAGTAAGACCATGGTTGAAAGA
TACCATGGCAACATGACATGAAATGAATAAAACCATGGATGAAAGATACCATGGCAACGTGACAT
GAAAAGAA
Found at i:86036502 original size:22 final size:22
Alignment explanation
Indices: 86036472--86036536 Score: 62
Period size: 22 Copynumber: 2.9 Consensus size: 22
86036462 ATGTACTTAC
*
86036472 TTATTATTTAAGAAAT-TAATAA
1 TTATAATTTAA-AAATATAATAA
*
86036494 TTATAATTTAATAATATAATAA
1 TTATAATTTAAAAATATAATAA
*
86036516 -TATAATAGTTAATAATATAAT
1 TTATAAT--TTAAAAATATAAT
86036537 CAAAGAAATA
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
21 9 0.24
22 16 0.42
23 13 0.34
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (22 bp):
TTATAATTTAAAAATATAATAA
Found at i:86036530 original size:23 final size:22
Alignment explanation
Indices: 86036488--86036536 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 22
86036478 TTTAAGAAAT
86036488 TAATAATTATAATTTAATAATA
1 TAATAATTATAATTTAATAATA
86036510 TAATAA-TATAATAGTTAATAATA
1 TAATAATTATAAT--TTAATAATA
86036533 TAAT
1 TAAT
86036537 CAAAGAAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
21 6 0.24
22 6 0.24
23 13 0.52
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (22 bp):
TAATAATTATAATTTAATAATA
Found at i:86037476 original size:24 final size:24
Alignment explanation
Indices: 86037449--86037496 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
86037439 AGGTACTTTG
*
86037449 TACCTGACTGTGACTGTTACTGTT
1 TACCTGACTATGACTGTTACTGTT
86037473 TACCTGACTATGACTGTTACTGTT
1 TACCTGACTATGACTGTTACTGTT
86037497 ACTGTTACCC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.19, C:0.21, G:0.19, T:0.42
Consensus pattern (24 bp):
TACCTGACTATGACTGTTACTGTT
Found at i:86043943 original size:8 final size:8
Alignment explanation
Indices: 86043924--86043969 Score: 62
Period size: 8 Copynumber: 6.1 Consensus size: 8
86043914 TTTAAGAAAT
86043924 TAATAAT-
1 TAATAATA
86043931 T-ATAATA
1 TAATAATA
86043938 TAATAATA
1 TAATAATA
86043946 TAATAATA
1 TAATAATA
*
86043954 TAATAGT-
1 TAATAATA
86043961 TAATAATA
1 TAATAATA
86043969 T
1 T
86043970 TGCAAAAGAA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
6 5 0.15
7 8 0.24
8 21 0.62
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (8 bp):
TAATAATA
Found at i:86050012 original size:2 final size:2
Alignment explanation
Indices: 86050000--86050029 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
86049990 GTATAATTAA
*
86050000 AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
86050030 GTGCAAATGG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:86052058 original size:36 final size:35
Alignment explanation
Indices: 86051988--86052057 Score: 86
Period size: 37 Copynumber: 1.9 Consensus size: 35
86051978 GATTAAACAA
* **
86051988 TAATTTTAGAATTTTAAAAAATATTTTTGAAAAAT
1 TAATTTTAAAATTTTAAAAAATATTAGTGAAAAAT
*
86052023 TAATTTTAAAGATTTTAAATAATTATTAGTGAAAA
1 TAATTTTAAA-ATTTTAAA-AAATATTAGTGAAAA
86052058 TAATCAATTT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
35 9 0.31
36 8 0.28
37 12 0.41
ACGTcount: A:0.49, C:0.00, G:0.07, T:0.44
Consensus pattern (35 bp):
TAATTTTAAAATTTTAAAAAATATTAGTGAAAAAT
Found at i:86059232 original size:6 final size:6
Alignment explanation
Indices: 86059221--86059263 Score: 68
Period size: 6 Copynumber: 7.2 Consensus size: 6
86059211 AAGTGCTCGC
* *
86059221 GATAGA GATAGA GATAGG GATAGG GATAGG GATAGG GATAGG G
1 GATAGG GATAGG GATAGG GATAGG GATAGG GATAGG GATAGG G
86059264 CAAATAGAGA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 36 1.00
ACGTcount: A:0.37, C:0.00, G:0.47, T:0.16
Consensus pattern (6 bp):
GATAGG
Found at i:86063854 original size:24 final size:24
Alignment explanation
Indices: 86063824--86063878 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
86063814 CTGTGGAGAT
* *
86063824 TGATGATGCTT-TGGTGATTGAAGA
1 TGATGATACTTCTGATGA-TGAAGA
*
86063848 TGATGATATTTCTGATGATGAAGA
1 TGATGATACTTCTGATGATGAAGA
86063872 TGATGAT
1 TGATGAT
86063879 CATGAAGACG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
24 22 0.81
25 5 0.19
ACGTcount: A:0.29, C:0.04, G:0.29, T:0.38
Consensus pattern (24 bp):
TGATGATACTTCTGATGATGAAGA
Found at i:86068673 original size:29 final size:29
Alignment explanation
Indices: 86068626--86068686 Score: 95
Period size: 29 Copynumber: 2.1 Consensus size: 29
86068616 TGGTGGTTGA
* *
86068626 AAGCGGATGGTCTGTTAGAGGGCAAAAGT
1 AAGCGGATGGTCTGCTAGAGGGCAAAAAT
*
86068655 AAGCGGATGGTTTGCTAGAGGGCAAAAAT
1 AAGCGGATGGTCTGCTAGAGGGCAAAAAT
86068684 AAG
1 AAG
86068687 TAGTGTGAGG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.34, C:0.10, G:0.36, T:0.20
Consensus pattern (29 bp):
AAGCGGATGGTCTGCTAGAGGGCAAAAAT
Found at i:86071399 original size:16 final size:16
Alignment explanation
Indices: 86071375--86071415 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
86071365 ACCTCAATCC
* *
86071375 AATAGAATTGTAATAG
1 AATAAAATTATAATAG
86071391 AATAAAATTATAATAG
1 AATAAAATTATAATAG
*
86071407 ATTAAAATT
1 AATAAAATT
86071416 TTTATCAGTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.56, C:0.00, G:0.10, T:0.34
Consensus pattern (16 bp):
AATAAAATTATAATAG
Found at i:86071636 original size:26 final size:26
Alignment explanation
Indices: 86071588--86071637 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
86071578 TTGTTATTAA
* ***
86071588 ATTTTAATAAAATTATTTTTAAATAG
1 ATTTTAATAAAAATATAAATAAATAG
86071614 ATTTTAATAAAAATATAAATAAAT
1 ATTTTAATAAAAATATAAATAAAT
86071638 TTAATCATAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (26 bp):
ATTTTAATAAAAATATAAATAAATAG
Found at i:86071710 original size:56 final size:58
Alignment explanation
Indices: 86071592--86071720 Score: 156
Period size: 56 Copynumber: 2.3 Consensus size: 58
86071582 TATTAAATTT
* * * * * * *
86071592 TAATAAAATTATTTTTAAATAGATTTTAATAAAAATATAAATAAATTTAATCATATTT
1 TAATATAATTATTATTAAATACAATTTAATAAAAATATAAATAAATTTAATAACATTC
*
86071650 TAATATAATT-TTATTAAATACAATTTAAT-AAAATA-ATATATAATTTAATAACATTC
1 TAATATAATTATTATTAAATACAATTTAATAAAAATATAAATA-AATTTAATAACATTC
86071706 TAATATAATTATTAT
1 TAATATAATTATTAT
86071721 ATGAATTAAA
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
55 4 0.07
56 28 0.46
57 20 0.33
58 9 0.15
ACGTcount: A:0.51, C:0.03, G:0.01, T:0.45
Consensus pattern (58 bp):
TAATATAATTATTATTAAATACAATTTAATAAAAATATAAATAAATTTAATAACATTC
Found at i:86071756 original size:23 final size:21
Alignment explanation
Indices: 86071725--86071767 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
86071715 TATTATATGA
86071725 ATTAAAAAATCATAATATATAAT
1 ATTAAAAAA--ATAATATATAAT
*
86071748 ATTATAAAAATAATATATAA
1 ATTAAAAAAATAATATATAA
86071768 CCTACTTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 11 0.58
23 8 0.42
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (21 bp):
ATTAAAAAAATAATATATAAT
Found at i:86072273 original size:26 final size:26
Alignment explanation
Indices: 86072237--86072289 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
86072227 TAGAAAGAAG
86072237 ATAAATGAATGATTAACAACAATCTA
1 ATAAATGAATGATTAACAACAATCTA
86072263 ATAAATGAATGATTAACAACAATCTA
1 ATAAATGAATGATTAACAACAATCTA
86072289 A
1 A
86072290 CTTTAGGAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.55, C:0.11, G:0.08, T:0.26
Consensus pattern (26 bp):
ATAAATGAATGATTAACAACAATCTA
Found at i:86075217 original size:2 final size:2
Alignment explanation
Indices: 86075210--86075254 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
86075200 AACAAAAGCA
86075210 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
86075252 AT A
1 AT A
86075255 GAAAAGAAAT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:86079523 original size:44 final size:44
Alignment explanation
Indices: 86079426--86079537 Score: 118
Period size: 44 Copynumber: 2.5 Consensus size: 44
86079416 ATACCAGCAA
** * *
86079426 CGAGTAAGACCATGACTGAAAA-ATGTTATGGTATCACGATTCTAT
1 CGAGTAAGACCAT-ACT-AAAAGACATTATGGAATCACGATTATAT
* * *
86079471 TGAATAAGACCATACTAAAAGACATTATGGAATCATGATTATAT
1 CGAGTAAGACCATACTAAAAGACATTATGGAATCACGATTATAT
*
86079515 CGAGTAAGACCATAGCTGAAAGA
1 CGAGTAAGACCATA-CTAAAAGA
86079538 TGCTATGGCA
Statistics
Matches: 55, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
43 4 0.07
44 33 0.60
45 18 0.33
ACGTcount: A:0.41, C:0.14, G:0.19, T:0.26
Consensus pattern (44 bp):
CGAGTAAGACCATACTAAAAGACATTATGGAATCACGATTATAT
Found at i:86079574 original size:45 final size:46
Alignment explanation
Indices: 86079383--86079641 Score: 138
Period size: 45 Copynumber: 5.7 Consensus size: 46
86079373 CCAGAGAATA
* *
86079383 AATAAGACCATAGTTGAAAGATACTATGGCA-C-C-ATACCAGCAACG
1 AATAAGACCATAGCTGAAAGATACTATGGCATCACGA-ATCA-CAACG
* * ** * * * **
86079428 AGTAAGACCAT-GACTGAAAAATGTTATGGTATCACGATTC-TATTG
1 AATAAGACCATAG-CTGAAAGATACTATGGCATCACGAATCACAACG
* * * * * * * *
86079473 AATAAGACCATA-CTAAAAGACATTATGGAATCATG-ATTATATCG
1 AATAAGACCATAGCTGAAAGATACTATGGCATCACGAATCACAACG
* *
86079517 AGTAAGACCATAGCTGAAAGATGCTATGGCATCACGAATCA-AACG
1 AATAAGACCATAGCTGAAAGATACTATGGCATCACGAATCACAACG
* * * *** * *
86079562 AATAAGACCATAGTTGAAAGACACTATGGCAACACGACGGAAAATG
1 AATAAGACCATAGCTGAAAGATACTATGGCATCACGAATCACAACG
* * **
86079608 AATAAGACCATGGCTTAAAGGCACTATGGCATCA
1 AATAAGACCATAGCTGAAAGATACTATGGCATCA
86079642 AGACGAGAAT
Statistics
Matches: 161, Mismatches: 44, Indels: 17
0.73 0.20 0.08
Matches are distributed among these distances:
43 1 0.01
44 33 0.20
45 88 0.55
46 36 0.22
47 2 0.01
48 1 0.01
ACGTcount: A:0.41, C:0.18, G:0.19, T:0.22
Consensus pattern (46 bp):
AATAAGACCATAGCTGAAAGATACTATGGCATCACGAATCACAACG
Found at i:86079633 original size:46 final size:45
Alignment explanation
Indices: 86079519--86079683 Score: 152
Period size: 45 Copynumber: 3.6 Consensus size: 45
86079509 TTATATCGAG
* ** * * *** *
86079519 TAAGACCATAGCTGAAAGATGCTATGGCATCACGAATCAAACGAA
1 TAAGACCATAGTTGAAAGACACTATGGCAACAAGACGAAAATGAA
*
86079564 TAAGACCATAGTTGAAAGACACTATGGCAACACGACGGAAAATGAA
1 TAAGACCATAGTTGAAAGACACTATGGCAACAAGAC-GAAAATGAA
* * * * *
86079610 TAAGACCATGGCTT-AAAGGCACTATGGCATCAAGACGAGAATAAA
1 TAAGACCATAG-TTGAAAGACACTATGGCAACAAGACGAAAATGAA
* *
86079655 TAAGACCATTGTTGAAAGACACCATGGCA
1 TAAGACCATAGTTGAAAGACACTATGGCA
86079684 CACTCTGATC
Statistics
Matches: 100, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
44 2 0.02
45 61 0.61
46 35 0.35
47 2 0.02
ACGTcount: A:0.42, C:0.19, G:0.21, T:0.18
Consensus pattern (45 bp):
TAAGACCATAGTTGAAAGACACTATGGCAACAAGACGAAAATGAA
Found at i:86079682 original size:45 final size:46
Alignment explanation
Indices: 86079562--86079683 Score: 149
Period size: 46 Copynumber: 2.7 Consensus size: 46
86079552 GAATCAAACG
* *
86079562 AATAAGACCATAGTTGAAAGACACTATGGCAACACGACGGAAAATG
1 AATAAGACCATAGTTGAAAGACACTATGGCAACAAGACGGAAAATA
* * * *
86079608 AATAAGACCATGGCTT-AAAGGCACTATGGCATCAAGAC-GAGAATA
1 AATAAGACCATAG-TTGAAAGACACTATGGCAACAAGACGGAAAATA
* *
86079653 AATAAGACCATTGTTGAAAGACACCATGGCA
1 AATAAGACCATAGTTGAAAGACACTATGGCA
86079684 CACTCTGATC
Statistics
Matches: 65, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
44 2 0.03
45 30 0.46
46 31 0.48
47 2 0.03
ACGTcount: A:0.43, C:0.18, G:0.21, T:0.17
Consensus pattern (46 bp):
AATAAGACCATAGTTGAAAGACACTATGGCAACAAGACGGAAAATA
Found at i:86081501 original size:15 final size:15
Alignment explanation
Indices: 86081481--86081510 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
86081471 CCTATAAATA
*
86081481 TCATCCCTCATCCCT
1 TCATCCATCATCCCT
86081496 TCATCCATCATCCCT
1 TCATCCATCATCCCT
86081511 CATAGCTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.50, G:0.00, T:0.33
Consensus pattern (15 bp):
TCATCCATCATCCCT
Found at i:86082911 original size:25 final size:26
Alignment explanation
Indices: 86082843--86082925 Score: 141
Period size: 26 Copynumber: 3.2 Consensus size: 26
86082833 TGATACAAAT
*
86082843 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
86082869 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
86082895 TGATAAT-GGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
86082920 TGATAA
1 TGATAA
86082926 GAATATCATG
Statistics
Matches: 55, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
25 24 0.44
26 31 0.56
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:86084567 original size:27 final size:27
Alignment explanation
Indices: 86084526--86084665 Score: 183
Period size: 27 Copynumber: 5.2 Consensus size: 27
86084516 GAGGAAGCGT
*
86084526 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
86084553 TCTGGTGGCTCTGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
86084580 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
86084607 TCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
86084635 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
86084661 TCTGG
1 TCTGG
86084666 CAGCCATGCT
Statistics
Matches: 102, Mismatches: 10, Indels: 3
0.89 0.09 0.03
Matches are distributed among these distances:
26 5 0.05
27 82 0.80
28 15 0.15
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:86084611 original size:54 final size:55
Alignment explanation
Indices: 86084526--86084665 Score: 203
Period size: 54 Copynumber: 2.6 Consensus size: 55
86084516 GAGGAAGCGT
* * *
86084526 TCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACAAATATCTG-A
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA
* *
86084580 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA
* *
86084635 TCTGGTGACTCTGTCACAT-TATCTGTTCTGG
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGG
86084666 CAGCCATGCT
Statistics
Matches: 78, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
54 60 0.77
55 18 0.23
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (55 bp):
TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA
Found at i:86089480 original size:22 final size:21
Alignment explanation
Indices: 86089451--86089509 Score: 75
Period size: 22 Copynumber: 2.7 Consensus size: 21
86089441 TGCACTAATG
86089451 AACAGAGAGCACTAAAGTGCT
1 AACAGAGAGCACTAAAGTGCT
*
86089472 ATACAGAGAGCAC-AGATGTGCT
1 A-ACAGAGAGCACTA-AAGTGCT
86089494 AATCAGAGAGCACTAA
1 AA-CAGAGAGCACTAA
86089510 CAAACTAGTA
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
21 3 0.09
22 29 0.88
23 1 0.03
ACGTcount: A:0.42, C:0.19, G:0.24, T:0.15
Consensus pattern (21 bp):
AACAGAGAGCACTAAAGTGCT
Found at i:86091030 original size:3 final size:3
Alignment explanation
Indices: 86091016--86091057 Score: 75
Period size: 3 Copynumber: 14.0 Consensus size: 3
86091006 TCTTTAATTT
*
86091016 ATA ATT ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
86091058 TCAATGTCAT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
ATA
Found at i:86091093 original size:12 final size:12
Alignment explanation
Indices: 86091010--86091093 Score: 68
Period size: 12 Copynumber: 6.8 Consensus size: 12
86091000 TGTCTTTCTT
*
86091010 TAATTTATAATTA
1 TAATATATAA-TA
86091023 TAATA-ATAATAA
1 TAATATATAAT-A
86091035 TAATA-ATAATAA
1 TAATATATAAT-A
86091047 TAATA-ATAATA
1 TAATATATAATA
*
86091058 TCAATGTCATAATA
1 T-AATAT-ATAATA
86091072 TAA-ATAATAATA
1 TAATAT-ATAATA
86091084 TAATATATAA
1 TAATATATAA
86091094 ATATCTTTTA
Statistics
Matches: 62, Mismatches: 4, Indels: 11
0.81 0.05 0.14
Matches are distributed among these distances:
11 3 0.05
12 44 0.71
13 8 0.13
14 7 0.11
ACGTcount: A:0.58, C:0.02, G:0.01, T:0.38
Consensus pattern (12 bp):
TAATATATAATA
Found at i:86093770 original size:6 final size:6
Alignment explanation
Indices: 86093761--86093820 Score: 61
Period size: 6 Copynumber: 9.7 Consensus size: 6
86093751 AGAAAATAAA
*
86093761 AAAAAT -AAAAT AGAAAAT AAAAA- AATAAAT AACAAAAT ACAAAT AAAAAT
1 AAAAAT AAAAAT A-AAAAT AAAAAT AA-AAAT -A-AAAAT AAAAAT AAAAAT
86093811 AAAAAT AAAA
1 AAAAAT AAAA
86093821 CTGGGTTGCC
Statistics
Matches: 46, Mismatches: 2, Indels: 12
0.77 0.03 0.20
Matches are distributed among these distances:
5 7 0.15
6 26 0.57
7 7 0.15
8 5 0.11
9 1 0.02
ACGTcount: A:0.80, C:0.03, G:0.02, T:0.15
Consensus pattern (6 bp):
AAAAAT
Found at i:86093784 original size:20 final size:20
Alignment explanation
Indices: 86093751--86093820 Score: 74
Period size: 20 Copynumber: 3.5 Consensus size: 20
86093741 TTAACATGCA
86093751 AGAAAATAAAAAAAATAAAAT
1 AGAAAAT-AAAAAAATAAAAT
86093772 AGAAAATAAAAAAAT-AAAT
1 AGAAAATAAAAAAATAAAAT
* * *
86093791 AACAAAATACAAATA-AAAAT
1 -AGAAAATAAAAAAATAAAAT
86093811 A-AAAATAAAA
1 AGAAAATAAAA
86093821 CTGGGTTGCC
Statistics
Matches: 43, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
18 8 0.19
19 5 0.12
20 23 0.53
21 7 0.16
ACGTcount: A:0.80, C:0.03, G:0.03, T:0.14
Consensus pattern (20 bp):
AGAAAATAAAAAAATAAAAT
Found at i:86096112 original size:40 final size:40
Alignment explanation
Indices: 86095936--86096139 Score: 225
Period size: 40 Copynumber: 5.1 Consensus size: 40
86095926 CGGAATACAA
* * *
86095936 CCGGATATAACCAC-ACGCACGAATGCCCTCGGGTCTTAGC
1 CCGGATATAACAACTA-GCACAAATGCCTTCGGGTCTTAGC
* *
86095976 CCGGATATAACGAA-TTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAAC-AACTAGCACAAATGCCTTCGGGTCTTAGC
* *
86096016 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
86096056 CCGGATATAGTC-ACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATA-ACAACTAGCACAAATGCCTTCGGGTCTTAGC
** * * *
86096096 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGC
86096136 CCGG
1 CCGG
86096140 GTATCATTCA
Statistics
Matches: 142, Mismatches: 17, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
39 2 0.01
40 138 0.97
41 2 0.01
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:86096294 original size:64 final size:64
Alignment explanation
Indices: 86096226--86096414 Score: 142
Period size: 64 Copynumber: 3.0 Consensus size: 64
86096216 GAACACAAAC
86096226 ATATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACAT
1 ATATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACAT
* * * * *** * *** * ** * *
86096290 ATATCAATA--ATCATTACACATCCATATTTCATTTTC-GTTA-C--T--AAGGCTCAAACACAA
1 ATATCACTAGCATAATTGC-CTTCGGGACTT-A-GCCCGGGTACCATTCAAATACTCATACACAC
*
86096347 AC
63 AT
86096349 ATATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACAT
1 ATATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACAT
86096413 AT
1 AT
86096415 GTCAATAATC
Statistics
Matches: 80, Mismatches: 34, Indels: 22
0.59 0.25 0.16
Matches are distributed among these distances:
58 1 0.01
59 24 0.30
60 7 0.09
61 7 0.09
62 7 0.09
63 7 0.09
64 26 0.32
65 1 0.01
ACGTcount: A:0.34, C:0.26, G:0.11, T:0.29
Consensus pattern (64 bp):
ATATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACAT
Found at i:86096327 original size:123 final size:123
Alignment explanation
Indices: 86096108--86096446 Score: 597
Period size: 123 Copynumber: 2.8 Consensus size: 123
86096098 GGATATAATT
* * * * * * *
86096108 ACTAGCATAAATGTCTTCGGGACTTAGCCCGGGTATCATTCAATTGCTCATGCACACATAAATCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
*
86096173 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCGAACACAAACATATC
66 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
86096231 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
86096296 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
66 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
*
86096354 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATGTCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
86096419 ATAATCATTACACATCCATATTTCATTT
66 ATAATCATTACACATCCATATTTCATTT
86096447 CACATAATTC
Statistics
Matches: 207, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
123 207 1.00
ACGTcount: A:0.34, C:0.25, G:0.11, T:0.30
Consensus pattern (123 bp):
ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
Found at i:86101024 original size:42 final size:42
Alignment explanation
Indices: 86100919--86101028 Score: 109
Period size: 42 Copynumber: 2.6 Consensus size: 42
86100909 ATACCAATGT
* * *
86100919 CATGTCCTAGACATGGTCTTACATGGAAATCTCATATCGATGC
1 CATGTCCCAGACATGGTCTTACA-CGAAACCTCATATCGATGC
**
86100962 CAATAG-CCCAG-CTATGGTCTTACACGATGCCTCATA-CAGATGC
1 C-AT-GTCCCAGAC-ATGGTCTTACACGAAACCTCATATC-GATGC
86101005 CATGTCCCAGACATGGTCTTACAC
1 CATGTCCCAGACATGGTCTTACAC
86101029 TGGCTCACAC
Statistics
Matches: 56, Mismatches: 5, Indels: 13
0.76 0.07 0.18
Matches are distributed among these distances:
41 1 0.02
42 20 0.36
43 17 0.30
44 17 0.30
45 1 0.02
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.26
Consensus pattern (42 bp):
CATGTCCCAGACATGGTCTTACACGAAACCTCATATCGATGC
Found at i:86101090 original size:58 final size:57
Alignment explanation
Indices: 86101000--86101192 Score: 197
Period size: 48 Copynumber: 3.7 Consensus size: 57
86100990 GCCTCATACA
*
86101000 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACACTGGCTCACATAACGATGTC
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCACA-TGGCTCACATAACGATGTC
* * *
86101058 GATGCCATGTCTCAGACATGGTCTTACACTGGCTCACA----T-A-A-AA--ATGCC
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATGGCTCACATAACGATGTC
* *
86101106 GATGCCATGTCTCAAACATAGTCTT--A------CA-ATGGCTCACATAACGATGTC
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATGGCTCACATAACGATGTC
86101154 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCACAT
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCACAT
86101193 AACAATGCTG
Statistics
Matches: 110, Mismatches: 7, Indels: 37
0.71 0.05 0.24
Matches are distributed among these distances:
39 1 0.01
40 2 0.02
43 1 0.01
44 1 0.01
45 1 0.01
46 3 0.03
48 54 0.49
50 3 0.03
51 1 0.01
52 1 0.01
53 1 0.01
56 2 0.02
57 2 0.02
58 37 0.34
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.25
Consensus pattern (57 bp):
GATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATGGCTCACATAACGATGTC
Found at i:86101151 original size:96 final size:96
Alignment explanation
Indices: 86101039--86101227 Score: 315
Period size: 96 Copynumber: 2.0 Consensus size: 96
86101029 TGGCTCACAC
* *
86101039 TGGCTCACATAACGATGTCGATGCCATGTCTCAGACATGGTCTTACACTGGCTCACATAAAAATG
1 TGGCTCACATAACGATGTCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATAAAAATG
*
86101104 CCGATGCCATGTCTCAAACATAGTCTTACAA
66 CCGATGCCATGTCCCAAACATAGTCTTACAA
*
86101135 TGGCTCACATAACGATGTCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATAACAATG
1 TGGCTCACATAACGATGTCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATAAAAATG
* * *
86101200 CTGATGCCATGTCCCAGACATGGTCTTA
66 CCGATGCCATGTCCCAAACATAGTCTTA
86101228 TATGGGATCA
Statistics
Matches: 86, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
96 86 1.00
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.26
Consensus pattern (96 bp):
TGGCTCACATAACGATGTCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATAAAAATG
CCGATGCCATGTCCCAAACATAGTCTTACAA
Found at i:86101240 original size:48 final size:48
Alignment explanation
Indices: 86101035--86101227 Score: 280
Period size: 48 Copynumber: 4.0 Consensus size: 48
86101025 ACACTGGCTC
* * *
86101035 ACACTGGCTCACATAACGATGTCGATGCCATGTCTCAGACATGGTCTT
1 ACACTGGCTCACATAACAATGTCGATGCCATGTCCCAAACATGGTCTT
* * * *
86101083 ACACTGGCTCACATAAAAATGCCGATGCCATGTCTCAAACATAGTCTT
1 ACACTGGCTCACATAACAATGTCGATGCCATGTCCCAAACATGGTCTT
* *
86101131 ACAATGGCTCACATAACGATGTCGATGCCATGTCCCAAACATGGTCTT
1 ACACTGGCTCACATAACAATGTCGATGCCATGTCCCAAACATGGTCTT
*
86101179 ACACTGGCTCACATAACAATG-CTGATGCCATGTCCCAGACATGGTCTT
1 ACACTGGCTCACATAACAATGTC-GATGCCATGTCCCAAACATGGTCTT
86101227 A
1 A
86101228 TATGGGATCA
Statistics
Matches: 130, Mismatches: 14, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
47 1 0.01
48 129 0.99
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (48 bp):
ACACTGGCTCACATAACAATGTCGATGCCATGTCCCAAACATGGTCTT
Found at i:86109037 original size:14 final size:14
Alignment explanation
Indices: 86109015--86109048 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
86109005 AATAGAGAAC
*
86109015 TTTTCATCACTTTT
1 TTTTTATCACTTTT
86109029 TTTTTATCACTTTT
1 TTTTTATCACTTTT
*
86109043 TCTTTA
1 TTTTTA
86109049 GCCTCCGAGC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.15, C:0.18, G:0.00, T:0.68
Consensus pattern (14 bp):
TTTTTATCACTTTT
Found at i:86113509 original size:29 final size:28
Alignment explanation
Indices: 86113463--86113521 Score: 109
Period size: 29 Copynumber: 2.1 Consensus size: 28
86113453 TAAATTAATA
86113463 TTTTTTATGATGATTATGATCTCATATG
1 TTTTTTATGATGATTATGATCTCATATG
86113491 TTTTATTATGATGATTATGATCTCATATG
1 TTTT-TTATGATGATTATGATCTCATATG
86113520 TT
1 TT
86113522 ACAGCCAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
28 4 0.13
29 26 0.87
ACGTcount: A:0.25, C:0.07, G:0.14, T:0.54
Consensus pattern (28 bp):
TTTTTTATGATGATTATGATCTCATATG
Found at i:86117931 original size:13 final size:14
Alignment explanation
Indices: 86117898--86117931 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
86117888 GCTCGGAGGC
*
86117898 TAAAGAAAAAGTGA
1 TAAAAAAAAAGTGA
86117912 TAAAAAAAAAGTGA
1 TAAAAAAAAAGTGA
86117926 TGAAAA
1 T-AAAA
86117932 GTTCTCTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 14 0.78
15 4 0.22
ACGTcount: A:0.68, C:0.00, G:0.18, T:0.15
Consensus pattern (14 bp):
TAAAAAAAAAGTGA
Found at i:86134352 original size:13 final size:14
Alignment explanation
Indices: 86134336--86134364 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
86134326 AAAAATTTAG
86134336 AAATTA-TTTCTTA
1 AAATTATTTTCTTA
86134349 AAATTATTTTCTTA
1 AAATTATTTTCTTA
86134363 AA
1 AA
86134365 TTAGTACATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.40
14 9 0.60
ACGTcount: A:0.41, C:0.07, G:0.00, T:0.52
Consensus pattern (14 bp):
AAATTATTTTCTTA
Found at i:86139668 original size:26 final size:26
Alignment explanation
Indices: 86139632--86139682 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
86139622 TCGGATGATG
*
86139632 TTCCTGTCTATTTCTCTTGAAAATAA
1 TTCCTGTCTATTTCTCTCGAAAATAA
86139658 TTCCTGTCTATTTCTCTCGAAAATA
1 TTCCTGTCTATTTCTCTCGAAAATA
86139683 GACTTATTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.22, G:0.08, T:0.45
Consensus pattern (26 bp):
TTCCTGTCTATTTCTCTCGAAAATAA
Found at i:86140495 original size:49 final size:50
Alignment explanation
Indices: 86140428--86140556 Score: 140
Period size: 50 Copynumber: 2.6 Consensus size: 50
86140418 TCAAGTCGAT
* *
86140428 GCCATGTCCCAGTCATGGTCTTACACTGACTATCA-AAAT-CG-AGGCCGAC
1 GCCATGTCCCAGACATGGTCTTACACTGACTATCACAAATCCGTA--CCAAC
* * * * *
86140477 GCCATGTCCTAGACATGGTCTTGCACT-AGCTCTCACATATCCGTACCAAT
1 GCCATGTCCCAGACATGGTCTTACACTGA-CTATCACAAATCCGTACCAAC
86140527 GCCATGTCCCAGACATGGTCTTACACTGAC
1 GCCATGTCCCAGACATGGTCTTACACTGAC
86140557 ACATCTCAAA
Statistics
Matches: 66, Mismatches: 9, Indels: 9
0.79 0.11 0.11
Matches are distributed among these distances:
48 1 0.02
49 29 0.44
50 32 0.48
51 3 0.05
52 1 0.02
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.25
Consensus pattern (50 bp):
GCCATGTCCCAGACATGGTCTTACACTGACTATCACAAATCCGTACCAAC
Found at i:86140609 original size:46 final size:44
Alignment explanation
Indices: 86140522--86140649 Score: 148
Period size: 46 Copynumber: 2.8 Consensus size: 44
86140512 CATATCCGTA
*
86140522 CCAATGCCATGTCCCAGACATGGTCTTACACTGACACATCTCAAAG
1 CCAATG-CATGTCCCAGACAT-GTCTTACACTGGCACATCTCAAAG
* * *
86140568 TCAATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCGAGG
1 CCAATGCATGTCCCAGACATGTCTTACACTGGC--ACATCTCAAAG
* * * *
86140614 CCGATACATGTCCGAGACATGCCTTACACTGGCACA
1 CCAATGCATGTCCCAGACATGTCTTACACTGGCACA
86140650 CAAATAACCT
Statistics
Matches: 71, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
44 15 0.21
45 14 0.20
46 42 0.59
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.23
Consensus pattern (44 bp):
CCAATGCATGTCCCAGACATGTCTTACACTGGCACATCTCAAAG
Found at i:86144851 original size:3 final size:3
Alignment explanation
Indices: 86144843--86144876 Score: 50
Period size: 3 Copynumber: 10.7 Consensus size: 3
86144833 GCAATTTAAT
86144843 TTA TTA TTA TTA TTA TTA TTA TTA CTTA GTTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA -TTA -TTA TT
86144877 TGCTTTTTCC
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
3 23 0.79
4 6 0.21
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:86167446 original size:29 final size:29
Alignment explanation
Indices: 86167404--86167476 Score: 146
Period size: 29 Copynumber: 2.5 Consensus size: 29
86167394 GTGACAAGAT
86167404 TGGCACTAAGTGTGCAAGCTTGAAAAGTA
1 TGGCACTAAGTGTGCAAGCTTGAAAAGTA
86167433 TGGCACTAAGTGTGCAAGCTTGAAAAGTA
1 TGGCACTAAGTGTGCAAGCTTGAAAAGTA
86167462 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
86167477 GAATTTAAAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.32, C:0.15, G:0.29, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCAAGCTTGAAAAGTA
Found at i:86167495 original size:29 final size:29
Alignment explanation
Indices: 86167463--86167535 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
86167453 TGAAAAGTAT
* * *
86167463 GGCACTAAGTGTGCGAATTTAAATTATAC
1 GGCACTAAGTGTGCGAACTTAAATCACAC
* * *
86167492 GGCACTATGTGTGCGAGCTTAAATCACAT
1 GGCACTAAGTGTGCGAACTTAAATCACAC
86167521 GGCACTAAGTGTGCG
1 GGCACTAAGTGTGCG
86167536 TGATCGATTA
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (29 bp):
GGCACTAAGTGTGCGAACTTAAATCACAC
Found at i:86175362 original size:29 final size:29
Alignment explanation
Indices: 86175320--86175392 Score: 146
Period size: 29 Copynumber: 2.5 Consensus size: 29
86175310 GTGACAAGAT
86175320 TGGCACTAAGTGTGCAAGCTTGAAAAGTA
1 TGGCACTAAGTGTGCAAGCTTGAAAAGTA
86175349 TGGCACTAAGTGTGCAAGCTTGAAAAGTA
1 TGGCACTAAGTGTGCAAGCTTGAAAAGTA
86175378 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
86175393 GAATTTAAAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.32, C:0.15, G:0.29, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCAAGCTTGAAAAGTA
Found at i:86175411 original size:29 final size:29
Alignment explanation
Indices: 86175379--86175451 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
86175369 TGAAAAGTAT
* * *
86175379 GGCACTAAGTGTGCGAATTTAAATTATAC
1 GGCACTAAGTGTGCGAACTTAAATCACAC
* * *
86175408 GGCACTATGTGTGCGAGCTTAAATCACAT
1 GGCACTAAGTGTGCGAACTTAAATCACAC
86175437 GGCACTAAGTGTGCG
1 GGCACTAAGTGTGCG
86175452 TGATCGATTA
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (29 bp):
GGCACTAAGTGTGCGAACTTAAATCACAC
Found at i:86196197 original size:27 final size:27
Alignment explanation
Indices: 86196156--86196209 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
86196146 TGTCATGTGA
* *
86196156 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
**
86196183 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
86196210 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:86196635 original size:49 final size:50
Alignment explanation
Indices: 86196463--86196652 Score: 220
Period size: 50 Copynumber: 3.8 Consensus size: 50
86196453 TGAGGTCATG
* * * * * *
86196463 TGTGTAGTAGTAAGTGCAGGCTACTATGCATACCCGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCATACCAGATAA-TTAGGTCACA
** * **
86196514 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCATACCAGATAATTAGGTCACA
** **
86196564 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCGTA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCATACCAGATAATTAGGTCACA
*
86196613 TGTGTAGTACTAAGTGCAGGCTACTATGCATACCAGATAA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCATACCAGATAA
86196653 CCTTGTCTAC
Statistics
Matches: 120, Mismatches: 19, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
49 42 0.35
50 46 0.38
51 32 0.27
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGCATACCAGATAATTAGGTCACA
Found at i:86200202 original size:32 final size:32
Alignment explanation
Indices: 86200161--86200224 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
86200151 AACCTCCTTA
86200161 CATCGTGACTTCAAGTTGAAGTTTTGAAATTT
1 CATCGTGACTTCAAGTTGAAGTTTTGAAATTT
86200193 CATCGTGACTTCAAGTTGAAGTTTTGAAATTT
1 CATCGTGACTTCAAGTTGAAGTTTTGAAATTT
86200225 TCTCAAATTG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.28, C:0.12, G:0.19, T:0.41
Consensus pattern (32 bp):
CATCGTGACTTCAAGTTGAAGTTTTGAAATTT
Found at i:86202741 original size:17 final size:17
Alignment explanation
Indices: 86202716--86202753 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
86202706 GACCTTCTAC
* *
86202716 GAGTCTCCAATTTGTAT
1 GAGTATCCAACTTGTAT
86202733 GAGTATCCAACTTGTAT
1 GAGTATCCAACTTGTAT
86202750 GAGT
1 GAGT
86202754 CTGTTGTGAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.26, C:0.16, G:0.21, T:0.37
Consensus pattern (17 bp):
GAGTATCCAACTTGTAT
Found at i:86202981 original size:49 final size:49
Alignment explanation
Indices: 86202916--86203051 Score: 134
Period size: 49 Copynumber: 2.8 Consensus size: 49
86202906 AAGTGAGATG
* *
86202916 GGCCATTGGTAGGGCATGTTAGTTGCTAACCAGAATGGC-GA-ATGAGA
1 GGCCATTAGTAGGGCATGTTAGTTGCTAACCAGAATGGCTGATAAGAGA
* * * *
86202963 CGAGCCATTAGTAGGGCATATTAGTTGC-ATACTAGATTGGCTGATAAGATA
1 -G-GCCATTAGTAGGGCATGTTAGTTGCTA-ACCAGAATGGCTGATAAGAGA
* * * *
86203014 GGCCACTAATAGGGCATGTTAGCTACTAACCAGAATGG
1 GGCCATTAGTAGGGCATGTTAGTTGCTAACCAGAATGG
86203052 TGGATATGTT
Statistics
Matches: 70, Mismatches: 13, Indels: 9
0.76 0.14 0.10
Matches are distributed among these distances:
48 2 0.03
49 60 0.86
50 4 0.06
51 4 0.06
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.25
Consensus pattern (49 bp):
GGCCATTAGTAGGGCATGTTAGTTGCTAACCAGAATGGCTGATAAGAGA
Found at i:86207338 original size:20 final size:19
Alignment explanation
Indices: 86207309--86207375 Score: 82
Period size: 20 Copynumber: 3.4 Consensus size: 19
86207299 GAACTACTCT
86207309 ATTT-CTTACTTATCATTCC
1 ATTTACTTACTT-TCATTCC
**
86207328 ATTTACTTACTTTTCATTTT
1 ATTTACTTAC-TTTCATTCC
86207348 ATTTACTTACTTTCCATTCC
1 ATTTACTTACTTT-CATTCC
86207368 ATTTACTT
1 ATTTACTT
86207376 GGCATAAGCC
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
19 7 0.17
20 32 0.78
21 2 0.05
ACGTcount: A:0.21, C:0.22, G:0.00, T:0.57
Consensus pattern (19 bp):
ATTTACTTACTTTCATTCC
Found at i:86210850 original size:42 final size:43
Alignment explanation
Indices: 86210737--86210894 Score: 130
Period size: 43 Copynumber: 3.7 Consensus size: 43
86210727 AGCTCGTACA
*
86210737 ATGCCAAC-GTCCCAGACATGGTCTTACATGTAACCAAATATCG
1 ATGCC-ACTGTCCCAGACATGGTCTTACACGTAACCAAATATCG
* * *
86210780 ATGCCACTGTCCCAAACAGGGTCTTACACG-AATTCAAATAT-G
1 ATGCCACTGTCCCAGACATGGTCTTACACGTAA-CCAAATATCG
* *
86210822 ATGTCGA-TGTCGCAGACATGGTCTTACACGTAA--ATAATAAGTCG
1 ATG-CCACTGTCCCAGACATGGTCTTACACGTAACCA-AAT-A-TCG
* ** *
86210866 ATGCCAATGTTGCAGACGTGGTCTTACAC
1 ATGCCACTGTCCCAGACATGGTCTTACAC
86210895 AAAAACACAT
Statistics
Matches: 95, Mismatches: 11, Indels: 17
0.77 0.09 0.14
Matches are distributed among these distances:
40 1 0.01
41 3 0.03
42 29 0.31
43 38 0.40
44 24 0.25
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.25
Consensus pattern (43 bp):
ATGCCACTGTCCCAGACATGGTCTTACACGTAACCAAATATCG
Found at i:86215092 original size:50 final size:50
Alignment explanation
Indices: 86214966--86215150 Score: 219
Period size: 50 Copynumber: 3.7 Consensus size: 50
86214956 TATATGTAGC
* * * * * * *
86214966 TAGGTCGCATGTGTAGTACTAAGTGTAGGCTACTATGCGAACCCGATAACT
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAA-T
* * * *
86215017 TCGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATAAT
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAAT
* *
86215067 TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAAT
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAAT
* *
86215117 T-GGTCGCATGTGTAGTACTAAGTGCATGCTACTA
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
86215151 TGCATACCAG
Statistics
Matches: 116, Mismatches: 18, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
49 30 0.26
50 48 0.41
51 38 0.33
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (50 bp):
TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAAT
Found at i:86217072 original size:15 final size:13
Alignment explanation
Indices: 86217042--86217079 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
86217032 TCGGCAGGGG
*
86217042 CACGCCTGTGTGA
1 CACGCCCGTGTGA
86217055 CACGCCCGTGTGA
1 CACGCCCGTGTGA
*
86217068 CACACCCGTGTG
1 CACGCCCGTGTG
86217080 CGATTACTCC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.16, C:0.37, G:0.29, T:0.18
Consensus pattern (13 bp):
CACGCCCGTGTGA
Found at i:86219661 original size:18 final size:18
Alignment explanation
Indices: 86219638--86219672 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
86219628 ATGGCGGATG
86219638 GCGAGGGCGATGAAGTAC
1 GCGAGGGCGATGAAGTAC
86219656 GCGAGGGCGATGAAGTA
1 GCGAGGGCGATGAAGTA
86219673 GGCAAGGTCG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.29, C:0.14, G:0.46, T:0.11
Consensus pattern (18 bp):
GCGAGGGCGATGAAGTAC
Found at i:86234294 original size:46 final size:46
Alignment explanation
Indices: 86234227--86234398 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
86234217 TAACCGCCCC
*
86234227 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCACATCCA
86234273 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCACATCCA
* * * * *
86234321 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCACATCCA
*
86234366 TAGGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
86234399 ATGCTCAACC
Statistics
Matches: 108, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 1 0.01
46 60 0.56
47 28 0.26
48 3 0.03
49 2 0.02
50 4 0.04
51 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCACATCCA
Found at i:86234339 original size:93 final size:93
Alignment explanation
Indices: 86234232--86234402 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
86234222 GCCCCTAAGT
* *
86234232 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
86234297 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
86234325 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
86234390 CGAGTTCGGATGC
66 CGAGTTCGGATGC
86234403 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:86240964 original size:40 final size:40
Alignment explanation
Indices: 86240856--86241065 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
86240846 CGGGATTTAA
* * * * *
86240856 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
86240896 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
86240936 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
86240976 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
86241016 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
86241056 CCGGATATAT
1 CCGGATATAT
86241066 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:86244791 original size:93 final size:93
Alignment explanation
Indices: 86244679--86244849 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
86244669 GCCCCTAAGT
*
86244679 GAACTCGGACTCAACTCAACGAGCCCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCCC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
86244743 ACAAGTTCGGATGCCTAGTTACATCTCAC
65 ACAAGTTCGGATGCCTAGTTACATCTCAC
** *
86244772 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCCCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
* *
86244837 CGAGTTTGGATGC
66 CAAGTTCGGATGC
86244850 TCAACCATCC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 2 0.03
93 69 0.97
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCCCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CAAGTTCGGATGCCTAGTTACATCTCAC
Found at i:86244841 original size:46 final size:45
Alignment explanation
Indices: 86244676--86244842 Score: 164
Period size: 46 Copynumber: 3.6 Consensus size: 45
86244666 CCCGCCCCTA
** *
86244676 AGTGAACTCGGACTCAACTCAACGAGCCCAGG-CGTTCGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCATCCAT
* *
86244721 AAGTGAACTCGGACTCAACTCAACAAGTTCGGATGCCTAGTT-ACAT-C-T
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCAT
*
86244769 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT
86244814 AGGTGAACTCGGACTCAACTCAACGAGTT
1 A-GTGAACTCGGACTCAACTCAACGAGTT
86244843 TGGATGCTCA
Statistics
Matches: 100, Mismatches: 10, Indels: 22
0.76 0.08 0.17
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 3 0.03
45 3 0.03
46 51 0.51
47 28 0.28
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.21
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT
Found at i:86246436 original size:12 final size:12
Alignment explanation
Indices: 86246419--86246449 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
86246409 TTATTAAAAC
86246419 TACTTTTATTTT
1 TACTTTTATTTT
86246431 TACTTTTATTTT
1 TACTTTTATTTT
86246443 TA-TTTTA
1 TACTTTTA
86246450 GCAGATTCTA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 5 0.26
12 14 0.74
ACGTcount: A:0.19, C:0.06, G:0.00, T:0.74
Consensus pattern (12 bp):
TACTTTTATTTT
Found at i:86253623 original size:28 final size:30
Alignment explanation
Indices: 86253591--86253647 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 30
86253581 ATACATTTCA
*
86253591 CATA-TTCCTCATTCATTTG-CACATATAG
1 CATATTTCCTCATACATTTGTCACATATAG
* *
86253619 CATATTTTCTCATACTTTTGTCACATATA
1 CATATTTCCTCATACATTTGTCACATATA
86253648 ATCACTTGAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 4 0.17
29 12 0.50
30 8 0.33
ACGTcount: A:0.28, C:0.23, G:0.05, T:0.44
Consensus pattern (30 bp):
CATATTTCCTCATACATTTGTCACATATAG
Found at i:86253926 original size:42 final size:43
Alignment explanation
Indices: 86253818--86253931 Score: 137
Period size: 43 Copynumber: 2.7 Consensus size: 43
86253808 AGATCGTACA
* * *
86253818 ATGCCAAC-GTCCCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCC-ACTGTCCCAGACGTGGTCTTACACGAAATCAAATATAG
*
86253861 ATGCCACTGTCCTAGACAG-GGTCTTACACGAAATCAAATA-AG
1 ATGCCACTGTCCCAGAC-GTGGTCTTACACGAAATCAAATATAG
86253903 ATGCCGA-TGTCCCAGACGTGGTCTTACAC
1 ATGCC-ACTGTCCCAGACGTGGTCTTACAC
86253932 ATAAATCATA
Statistics
Matches: 62, Mismatches: 5, Indels: 9
0.82 0.07 0.12
Matches are distributed among these distances:
41 1 0.02
42 27 0.44
43 33 0.53
44 1 0.02
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (43 bp):
ATGCCACTGTCCCAGACGTGGTCTTACACGAAATCAAATATAG
Found at i:86262584 original size:23 final size:24
Alignment explanation
Indices: 86262543--86262594 Score: 86
Period size: 24 Copynumber: 2.2 Consensus size: 24
86262533 TGAATGAAAG
86262543 AAAAGGGAATTTTTGGGGAAAATT
1 AAAAGGGAATTTTTGGGGAAAATT
* *
86262567 AAAAGGGAATTTTTGGGAAAAATC
1 AAAAGGGAATTTTTGGGGAAAATT
86262591 AAAA
1 AAAA
86262595 TTAAAAAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.48, C:0.02, G:0.25, T:0.25
Consensus pattern (24 bp):
AAAAGGGAATTTTTGGGGAAAATT
Found at i:86264285 original size:24 final size:24
Alignment explanation
Indices: 86264258--86264321 Score: 92
Period size: 24 Copynumber: 2.7 Consensus size: 24
86264248 TATCTATGAC
*
86264258 GCCTTTGTAGCGTATTTTGTAAGT
1 GCCTTTGTAGCATATTTTGTAAGT
* *
86264282 GCCTTTTTAGCATATTTTGTACGT
1 GCCTTTGTAGCATATTTTGTAAGT
*
86264306 GCCTTTGTGGCATATT
1 GCCTTTGTAGCATATT
86264322 CAAGATTAGC
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.16, C:0.16, G:0.22, T:0.47
Consensus pattern (24 bp):
GCCTTTGTAGCATATTTTGTAAGT
Found at i:86268312 original size:93 final size:93
Alignment explanation
Indices: 86268206--86268376 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
86268196 GCCCATAAGT
* *
86268206 GAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCAGACTCAACTCA
1 GAACTCGGACTCAACTCAACAAGCTC-GGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
86268270 ACAAGCTCGGATGCCTAGTTACATCTCTC
65 ACAAGCTCGGATGCCTAGTTACATCTCTC
* *
86268299 GAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
* *
86268364 CGAGTTCGGATGC
66 CAAGCTCGGATGC
86268377 TCAAATATCC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 2 0.03
93 69 0.97
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CAAGCTCGGATGCCTAGTTACATCTCTC
Found at i:86268373 original size:46 final size:45
Alignment explanation
Indices: 86268198--86268364 Score: 185
Period size: 46 Copynumber: 3.6 Consensus size: 45
86268188 TGTAACCCGC
* *
86268198 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACAAGCTC-GGCATTCGCAT
* *
86268244 CCATAAGTGAACTCAGACTCAACTCAACAAGCTCGG-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGCATTCGC-A--T
* *** *
86268290 ACATCTCTCGAACTCGGACTCAACTCAACAAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACAAGCTCGG-CATTCGCAT
86268337 CCATAAGTGAACTCGGACTCAACTCAAC
1 CCATAAGTGAACTCGGACTCAACTCAAC
86268365 GAGTTCGGAT
Statistics
Matches: 99, Mismatches: 15, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 57 0.58
47 31 0.31
49 4 0.04
50 1 0.01
ACGTcount: A:0.31, C:0.31, G:0.17, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGCATTCGCAT
Found at i:86272044 original size:30 final size:30
Alignment explanation
Indices: 86272008--86272109 Score: 111
Period size: 28 Copynumber: 3.5 Consensus size: 30
86271998 GACAAGATTG
* *
86272008 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGGGTTTAAAATTATATA
* * *
86272038 GCACTAAGTGTGCGCGTTT--GATTCTATA
1 GCACTAAGTGTGCGGGTTTAAAATTATATA
* * *
86272066 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGGGTTTAAAATTATATA
86272095 GCACTAAGTGTGCGG
1 GCACTAAGTGTGCGG
86272110 ATTCACTATA
Statistics
Matches: 60, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
28 22 0.37
29 19 0.32
30 19 0.32
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGGGTTTAAAATTATATA
Found at i:86272120 original size:29 final size:28
Alignment explanation
Indices: 86272037--86272112 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
86272027 AAAATTGTAC
* *
86272037 AGCACTAAGTGTGCGCGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
86272065 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
86272094 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
86272113 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:86279901 original size:30 final size:30
Alignment explanation
Indices: 86279865--86279965 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
86279855 GACAAGATTG
* * *
86279865 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
86279895 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
86279923 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
86279952 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
86279966 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:86279977 original size:29 final size:28
Alignment explanation
Indices: 86279894--86279969 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
86279884 AAAATTGTAC
* *
86279894 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
86279922 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
86279951 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
86279970 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:86281594 original size:30 final size:30
Alignment explanation
Indices: 86281560--86281685 Score: 171
Period size: 30 Copynumber: 4.2 Consensus size: 30
86281550 ACATGGGGTG
*
86281560 TGTCCAGCTCGTGTGGCTCACACGGGCGTA
1 TGTCCAGCCCGTGTGGCTCACACGGGCGTA
* * *
86281590 TGTCCAACCCGTGTGGCTCACACGGACGCA
1 TGTCCAGCCCGTGTGGCTCACACGGGCGTA
** *
86281620 TGTCCAGATCGTGTGGCTCACACGGGTGTA
1 TGTCCAGCCCGTGTGGCTCACACGGGCGTA
* *
86281650 TGTCTAGCCCGTGTGGCTCACACGGGCATA
1 TGTCCAGCCCGTGTGGCTCACACGGGCGTA
86281680 TGTCCA
1 TGTCCA
86281686 ACCCATGTTG
Statistics
Matches: 80, Mismatches: 16, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 80 1.00
ACGTcount: A:0.17, C:0.30, G:0.30, T:0.23
Consensus pattern (30 bp):
TGTCCAGCCCGTGTGGCTCACACGGGCGTA
Found at i:86281653 original size:60 final size:60
Alignment explanation
Indices: 86281560--86281674 Score: 194
Period size: 60 Copynumber: 1.9 Consensus size: 60
86281550 ACATGGGGTG
*
86281560 TGTCCAGCTCGTGTGGCTCACACGGGCGTATGTCCAACCCGTGTGGCTCACACGGACGCA
1 TGTCCAGATCGTGTGGCTCACACGGGCGTATGTCCAACCCGTGTGGCTCACACGGACGCA
* * *
86281620 TGTCCAGATCGTGTGGCTCACACGGGTGTATGTCTAGCCCGTGTGGCTCACACGG
1 TGTCCAGATCGTGTGGCTCACACGGGCGTATGTCCAACCCGTGTGGCTCACACGG
86281675 GCATATGTCC
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
60 51 1.00
ACGTcount: A:0.16, C:0.30, G:0.31, T:0.23
Consensus pattern (60 bp):
TGTCCAGATCGTGTGGCTCACACGGGCGTATGTCCAACCCGTGTGGCTCACACGGACGCA
Found at i:86282542 original size:9 final size:9
Alignment explanation
Indices: 86282528--86282570 Score: 50
Period size: 9 Copynumber: 4.8 Consensus size: 9
86282518 ATAATAATAA
86282528 TTTTTTATT
1 TTTTTTATT
86282537 TTTTTTATT
1 TTTTTTATT
** *
86282546 TTTTCCAAT
1 TTTTTTATT
*
86282555 TTTTTGATT
1 TTTTTTATT
86282564 TTTTTTA
1 TTTTTTA
86282571 CAAGAACAAT
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
9 27 1.00
ACGTcount: A:0.14, C:0.05, G:0.02, T:0.79
Consensus pattern (9 bp):
TTTTTTATT
Found at i:86283412 original size:13 final size:13
Alignment explanation
Indices: 86283394--86283420 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
86283384 TAAGTAATCA
86283394 CACACGGGCGTGT
1 CACACGGGCGTGT
86283407 CACACGGGCGTGT
1 CACACGGGCGTGT
86283420 C
1 C
86283421 CCTGCCGAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:86288247 original size:18 final size:17
Alignment explanation
Indices: 86288226--86288274 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 17
86288216 AGATCAACAA
*
86288226 AATAAAAATAAGTAATAT
1 AATAAAAATAAATAA-AT
86288244 AATAAAAAATAAATAAAT
1 AAT-AAAAATAAATAAAT
86288262 AATATAAAATAAA
1 AATA-AAAATAAA
86288275 AAAAGAGTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
17 1 0.04
18 16 0.57
19 11 0.39
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.24
Consensus pattern (17 bp):
AATAAAAATAAATAAAT
Done.