Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 272 of 318
Found at i:86288257 original size:23 final size:24
Alignment explanation
Indices: 86288231--86288277 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 24
86288221 AACAAAATAA
*
86288231 AAATAAGTAATAT-AATAAAAAAT
1 AAATAAATAATATAAATAAAAAAT
86288254 AAATAAATAATATAAAATAAAAAA
1 AAATAAATAATAT-AAATAAAAAA
86288278 AGAGTAAAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 12 0.57
25 9 0.43
ACGTcount: A:0.74, C:0.00, G:0.02, T:0.23
Consensus pattern (24 bp):
AAATAAATAATATAAATAAAAAAT
Found at i:86293590 original size:13 final size:14
Alignment explanation
Indices: 86293572--86293609 Score: 69
Period size: 14 Copynumber: 2.8 Consensus size: 14
86293562 AACTGCAATC
86293572 CCTTGG-GTACGAT
1 CCTTGGAGTACGAT
86293585 CCTTGGAGTACGAT
1 CCTTGGAGTACGAT
86293599 CCTTGGAGTAC
1 CCTTGGAGTAC
86293610 TTCCCTACTT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
13 6 0.25
14 18 0.75
ACGTcount: A:0.18, C:0.24, G:0.29, T:0.29
Consensus pattern (14 bp):
CCTTGGAGTACGAT
Found at i:86297505 original size:28 final size:28
Alignment explanation
Indices: 86297459--86297527 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
86297449 TTTAAAACCC
*
86297459 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
86297486 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
86297514 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
86297528 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:86299179 original size:20 final size:20
Alignment explanation
Indices: 86299156--86299193 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
86299146 CACATCCAAA
*
86299156 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
86299176 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
86299194 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:86306113 original size:96 final size:96
Alignment explanation
Indices: 86305978--86306303 Score: 508
Period size: 96 Copynumber: 3.4 Consensus size: 96
86305968 ATGGCAGTAC
* * *
86305978 ATGTGATCCCATGTAAGACCATGTTTGGGACATGACATTGGGATTGATATGTGATCCCATGTAAG
1 ATGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTGATATGTGATCCCATGTAAG
*
86306043 ACCATATCTGGGATATGGCCTTGGCATCGAT
66 ACCATATCTGGGATATGGCATTGGCATCGAT
* *
86306074 ATGTGATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATTGATATGTGATCCCATGTAAG
1 ATGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTGATATGTGATCCCATGTAAG
* *
86306139 ACCATATCTAGGATATGACATTGGCATCGAT
66 ACCATATCTGGGATATGGCATTGGCATCGAT
* *
86306170 ATGTGATCCCATATAAGACCATGTCTGGGACATGGCATTGGCATTGATATGTGATCCCATGTAAT
1 ATGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTGATATGTGATCCCATGTAAG
86306235 ACCATATCTGGGATATGGCATTGGCATCGAT
66 ACCATATCTGGGATATGGCATTGGCATCGAT
* **** *
86306266 ATGTAATTTTGTGTAAGACCATGTTTGGGACATGGCAT
1 ATGTGATCCCATGTAAGACCATGTCTGGGACATGGCAT
86306304 CGATATAAGA
Statistics
Matches: 209, Mismatches: 21, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
96 209 1.00
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (96 bp):
ATGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTGATATGTGATCCCATGTAAG
ACCATATCTGGGATATGGCATTGGCATCGAT
Found at i:86306303 original size:48 final size:48
Alignment explanation
Indices: 86305978--86306269 Score: 449
Period size: 48 Copynumber: 6.1 Consensus size: 48
86305968 ATGGCAGTAC
* * * * * *
86305978 ATGTGATCCCATGTAAGACCATGTTTGGGACATGACATTGGGATTGAT
1 ATGTGATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCGAT
*
86306026 ATGTGATCCCATGTAAGACCATATCTGGGATATGGCCTTGGCATCGAT
1 ATGTGATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCGAT
*
86306074 ATGTGATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATTGAT
1 ATGTGATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCGAT
* *
86306122 ATGTGATCCCATGTAAGACCATATCTAGGATATGACATTGGCATCGAT
1 ATGTGATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCGAT
* * * *
86306170 ATGTGATCCCATATAAGACCATGTCTGGGACATGGCATTGGCATTGAT
1 ATGTGATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCGAT
*
86306218 ATGTGATCCCATGTAATACCATATCTGGGATATGGCATTGGCATCGAT
1 ATGTGATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCGAT
86306266 ATGT
1 ATGT
86306270 AATTTTGTGT
Statistics
Matches: 221, Mismatches: 23, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 221 1.00
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.30
Consensus pattern (48 bp):
ATGTGATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCGAT
Found at i:86306404 original size:36 final size:37
Alignment explanation
Indices: 86306320--86306420 Score: 132
Period size: 37 Copynumber: 2.8 Consensus size: 37
86306310 AAGACTTCCT
* *
86306320 GTAAGACCATAGTTGGGCTATAGCATCATGACGACAT
1 GTAAGACCATAGTTGGGCTATGGCATCATGACGACAA
* * * *
86306357 GTAAGACCATAGCTGGGCTATGGCATTATGA-TATAA
1 GTAAGACCATAGTTGGGCTATGGCATCATGACGACAA
*
86306393 GTAAGACCATAGTTGGACTATGGCATCA
1 GTAAGACCATAGTTGGGCTATGGCATCA
86306421 AGTAAATGAT
Statistics
Matches: 55, Mismatches: 9, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
36 27 0.49
37 28 0.51
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.26
Consensus pattern (37 bp):
GTAAGACCATAGTTGGGCTATGGCATCATGACGACAA
Found at i:86308461 original size:25 final size:27
Alignment explanation
Indices: 86308431--86308490 Score: 72
Period size: 25 Copynumber: 2.3 Consensus size: 27
86308421 AATAAAAGGA
86308431 AAAATACT-ATAAGGAAT-AATAT-AAT
1 AAAATA-TGATAAGGAATAAATATAAAT
*
86308456 AAAATATGATATGGAATAAAATATAAAT
1 AAAATATGATAAGGAAT-AAATATAAAT
86308484 AAAATAT
1 AAAATAT
86308491 AATGAAATAA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
24 1 0.03
25 14 0.47
27 5 0.17
28 10 0.33
ACGTcount: A:0.62, C:0.02, G:0.08, T:0.28
Consensus pattern (27 bp):
AAAATATGATAAGGAATAAATATAAAT
Found at i:86308607 original size:26 final size:26
Alignment explanation
Indices: 86308578--86308629 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
86308568 ATACATAATT
*
86308578 TATAAAAAAATAAAAAATAATATATA
1 TATAAAAAAATAAAAAATAAAATATA
* * *
86308604 TATAATAAAATATATAATAAAATATA
1 TATAAAAAAATAAAAAATAAAATATA
86308630 ATTTATAAGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (26 bp):
TATAAAAAAATAAAAAATAAAATATA
Found at i:86308612 original size:21 final size:20
Alignment explanation
Indices: 86308590--86308689 Score: 67
Period size: 21 Copynumber: 4.7 Consensus size: 20
86308580 TAAAAAAATA
86308590 AAAAATAATATATATATAAT
1 AAAAATAATATATATATAAT
*
86308610 -AAAATATATAATAAAATATAATTT
1 AAAAATA-AT-AT-ATATATAA--T
* * * *
86308634 ATAAGTAAGATATAGAATAAT
1 AAAAATAATATATA-TATAAT
* *
86308655 AAAAATAACATAATAGATAAT
1 AAAAATAATAT-ATATATAAT
86308676 AAAAATAATATATA
1 AAAAATAATATATA
86308690 ACTAATGTTT
Statistics
Matches: 61, Mismatches: 11, Indels: 16
0.69 0.12 0.18
Matches are distributed among these distances:
19 6 0.10
20 5 0.08
21 26 0.43
22 12 0.20
23 6 0.10
24 2 0.03
25 4 0.07
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.31
Consensus pattern (20 bp):
AAAAATAATATATATATAAT
Found at i:86308618 original size:12 final size:12
Alignment explanation
Indices: 86308578--86308629 Score: 59
Period size: 12 Copynumber: 4.2 Consensus size: 12
86308568 ATACATAATT
*
86308578 TATAAAAAAATA
1 TATAATAAAATA
* *
86308590 AAAAATAATATATA
1 TATAATAA-A-ATA
86308604 TATAATAAAATA
1 TATAATAAAATA
86308616 TATAATAAAATA
1 TATAATAAAATA
86308628 TA
1 TA
86308630 ATTTATAAGT
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
12 22 0.67
13 2 0.06
14 9 0.27
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (12 bp):
TATAATAAAATA
Found at i:86308623 original size:33 final size:33
Alignment explanation
Indices: 86308586--86308679 Score: 86
Period size: 33 Copynumber: 2.8 Consensus size: 33
86308576 TTTATAAAAA
*
86308586 AATAAAAAATAATATATATATAATAAAATATAT
1 AATAAAAAATAATATATATATAATAAAATATAG
* * *
86308619 AATAAAATATAAT-T-TATA-AGTAAGATATAG
1 AATAAAAAATAATATATATATAATAAAATATAG
* *
86308649 AATAATAAAAATAACATAATAGATAATAAAA
1 AAT-A-AAAAATAATAT-ATATATAATAAAA
86308680 ATAATATATA
Statistics
Matches: 46, Mismatches: 9, Indels: 9
0.72 0.14 0.14
Matches are distributed among these distances:
30 12 0.26
31 5 0.11
32 8 0.17
33 13 0.28
35 3 0.07
36 5 0.11
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (33 bp):
AATAAAAAATAATATATATATAATAAAATATAG
Found at i:86308709 original size:53 final size:55
Alignment explanation
Indices: 86308612--86308715 Score: 124
Period size: 53 Copynumber: 1.9 Consensus size: 55
86308602 TATATAATAA
* * * *
86308612 AATATATAATAAAATATAATTTATAAGTAAGATATAGAATAATAAA-AATAACAT
1 AATAGATAATAAAATATAATATATAACTAAGATATAGAACAATAAATAATAACAT
* *
86308666 AATAGATAATAAAA-ATAATATATAACTAATG-TTTATAACAATAAATAATA
1 AATAGATAATAAAATATAATATATAACTAA-GATATAGAACAATAAATAATA
86308716 TATAAGGTAT
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
53 24 0.57
54 18 0.43
ACGTcount: A:0.61, C:0.03, G:0.05, T:0.32
Consensus pattern (55 bp):
AATAGATAATAAAATATAATATATAACTAAGATATAGAACAATAAATAATAACAT
Found at i:86310436 original size:126 final size:126
Alignment explanation
Indices: 86310268--86310510 Score: 398
Period size: 126 Copynumber: 1.9 Consensus size: 126
86310258 CGAAATCTGT
* *
86310268 TGTCTTCGATCTGCTCCCTGACAATATGCCAAATCTGCTTCTTGGATTTACTCCTTGTTGAATAC
1 TGTCTTCGATCTGCTCCCTGACAATATGCCAAATCTACTTCTTGGATTTACTCCTTGTCGAATAC
*
86310333 AAAGATGTCAAGTCGACTATCTCTGATTTGCT-TTCTGACCATATAGAGATGCAAAATCTAC
66 AAAGATGTCAAGTCGACTATCTCTGATTTGCTCTT-TGACCATACAGAGATGCAAAATCTAC
* * *
86310394 TGTCTTCGATCTGTTCCCTGACAATATGCCAAATCTATTTCTTGGATTTACTCTTTGTCGAATAC
1 TGTCTTCGATCTGCTCCCTGACAATATGCCAAATCTACTTCTTGGATTTACTCCTTGTCGAATAC
* *
86310459 AAAGATGTCAAGTCTACTATCTCTGATTTTCTCTTTGACCATACAGAGATGC
66 AAAGATGTCAAGTCGACTATCTCTGATTTGCTCTTTGACCATACAGAGATGC
86310511 CAAGTCTTCG
Statistics
Matches: 108, Mismatches: 8, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
126 106 0.98
127 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.37
Consensus pattern (126 bp):
TGTCTTCGATCTGCTCCCTGACAATATGCCAAATCTACTTCTTGGATTTACTCCTTGTCGAATAC
AAAGATGTCAAGTCGACTATCTCTGATTTGCTCTTTGACCATACAGAGATGCAAAATCTAC
Found at i:86310702 original size:44 final size:42
Alignment explanation
Indices: 86310515--86310738 Score: 172
Period size: 44 Copynumber: 5.3 Consensus size: 42
86310505 AGATGCCAAG
* * *
86310515 TCTTCGATCTGTTCCCTGACAATACAGGGATGCCAAATCTACT
1 TCTTCGATCTGCTCCCTGACAATACAGAGATGCCAAATCT-CA
* * *
86310558 TCTTGGATTTGC-CCCTCGTCAAATAC-GAAGATGCCAAA--TCA
1 TCTTCGATCTGCTCCCT-GAC-AATACAG-AGATGCCAAATCTCA
* * * ** *
86310599 TCTTGGATCTGCTCCCCGTCGAATATGGAGATGCCAAATATCA
1 TCTTCGATCTGCTCCCTGAC-AATACAGAGATGCCAAATCTCA
* *
86310642 ACTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCTGCTA
1 TCTTCGATCTGCTCCCTGACAATACAGAGATGCCAAATCT-C-A
* * * *
86310686 TCTTTGATCTGCTCTCTGACAGTACAGAGATGCTAAA--TCA
1 TCTTCGATCTGCTCCCTGACAATACAGAGATGCCAAATCTCA
*
86310726 TCTTGGATCTGCT
1 TCTTCGATCTGCT
86310739 TCAACGTAAA
Statistics
Matches: 149, Mismatches: 23, Indels: 21
0.77 0.12 0.11
Matches are distributed among these distances:
40 13 0.09
41 30 0.20
42 27 0.18
43 31 0.21
44 48 0.32
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (42 bp):
TCTTCGATCTGCTCCCTGACAATACAGAGATGCCAAATCTCA
Found at i:86311126 original size:22 final size:22
Alignment explanation
Indices: 86311073--86311126 Score: 90
Period size: 22 Copynumber: 2.5 Consensus size: 22
86311063 CATTCCTTCG
* *
86311073 TCGAAGTTTATCCTTATTTCTC
1 TCGAAGTATCTCCTTATTTCTC
86311095 TCGAAGTATCTCCTTATTTCTC
1 TCGAAGTATCTCCTTATTTCTC
86311117 TCGAAGTATC
1 TCGAAGTATC
86311127 ATTCCTACTC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.24, G:0.11, T:0.44
Consensus pattern (22 bp):
TCGAAGTATCTCCTTATTTCTC
Found at i:86313294 original size:2 final size:2
Alignment explanation
Indices: 86313287--86313317 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
86313277 GAGACTAGTC
86313287 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
86313318 CATGTCATGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:86315307 original size:30 final size:30
Alignment explanation
Indices: 86315273--86315333 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
86315263 TCCTTAACTC
86315273 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
86315303 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
86315333 A
1 A
86315334 GGCTCGAGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:86321001 original size:46 final size:46
Alignment explanation
Indices: 86320934--86321022 Score: 160
Period size: 46 Copynumber: 1.9 Consensus size: 46
86320924 AATCGCTTTG
*
86320934 GCAACGAATTTTCAGTATTAGGGGTATTGTCGAACTTCACTACTTC
1 GCAACGAATTTTCAGTATTAGGGGTATTGTCAAACTTCACTACTTC
*
86320980 GCAACGGATTTTCAGTATTAGGGGTATTGTCAAACTTCACTAC
1 GCAACGAATTTTCAGTATTAGGGGTATTGTCAAACTTCACTAC
86321023 CCCCATCTTA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 41 1.00
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.34
Consensus pattern (46 bp):
GCAACGAATTTTCAGTATTAGGGGTATTGTCAAACTTCACTACTTC
Found at i:86326029 original size:2 final size:2
Alignment explanation
Indices: 86326022--86326052 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
86326012 TGTATAATAC
86326022 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
86326053 CAACCTCATG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:86326485 original size:12 final size:13
Alignment explanation
Indices: 86326469--86326507 Score: 53
Period size: 12 Copynumber: 3.0 Consensus size: 13
86326459 AAGTAATGCA
86326469 AGGTATAATATAT
1 AGGTATAATATAT
*
86326482 -GGTAAAATATAT
1 AGGTATAATATAT
86326494 AGTGTATAATATAT
1 AG-GTATAATATAT
86326508 TTTGTAAACA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 11 0.50
13 1 0.05
14 10 0.45
ACGTcount: A:0.46, C:0.00, G:0.15, T:0.38
Consensus pattern (13 bp):
AGGTATAATATAT
Found at i:86326623 original size:25 final size:27
Alignment explanation
Indices: 86326593--86326652 Score: 72
Period size: 25 Copynumber: 2.3 Consensus size: 27
86326583 AATAAAAGGA
86326593 AAAATACT-ATAAGGAAT-AATAT-AAT
1 AAAATA-TGATAAGGAATAAATATAAAT
*
86326618 AAAATATGATATGGAATAAAATATAAAT
1 AAAATATGATAAGGAAT-AAATATAAAT
86326646 AAAATAT
1 AAAATAT
86326653 AATGAAATAA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
24 1 0.03
25 14 0.47
27 5 0.17
28 10 0.33
ACGTcount: A:0.62, C:0.02, G:0.08, T:0.28
Consensus pattern (27 bp):
AAAATATGATAAGGAATAAATATAAAT
Found at i:86329625 original size:15 final size:15
Alignment explanation
Indices: 86329605--86329634 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
86329595 TATGGTATCG
86329605 TATCTTGGATTTCCT
1 TATCTTGGATTTCCT
*
86329620 TATCTTGGTTTTCCT
1 TATCTTGGATTTCCT
86329635 ATTGTTCATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.10, C:0.20, G:0.13, T:0.57
Consensus pattern (15 bp):
TATCTTGGATTTCCT
Found at i:86331348 original size:13 final size:13
Alignment explanation
Indices: 86331326--86331358 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
86331316 AAGGATTTGT
86331326 TTAT-TAAACTAA
1 TTATCTAAACTAA
86331338 TTATCTAAACTAA
1 TTATCTAAACTAA
*
86331351 TTAACTAA
1 TTATCTAA
86331359 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:86334254 original size:5 final size:5
Alignment explanation
Indices: 86334244--86334316 Score: 69
Period size: 5 Copynumber: 13.8 Consensus size: 5
86334234 TATGTCTTTC
*
86334244 AAAAT AAAAT --AAT AAAATT GAAAT GAAAAT AAAAAAT AAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAA-T AAAAT -AAAAT --AAAAT AAAAT AAAAT
86334291 AAAAT AAAAT AAAAAT AAGAAT AAAA
1 AAAAT AAAAT -AAAAT AA-AAT AAAA
86334317 AAATAAGAGG
Statistics
Matches: 58, Mismatches: 3, Indels: 14
0.77 0.04 0.19
Matches are distributed among these distances:
3 3 0.05
5 32 0.55
6 18 0.31
7 5 0.09
ACGTcount: A:0.77, C:0.00, G:0.04, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:86334281 original size:32 final size:30
Alignment explanation
Indices: 86334244--86334322 Score: 86
Period size: 32 Copynumber: 2.5 Consensus size: 30
86334234 TATGTCTTTC
* *
86334244 AAAATAAAATAATAAAATTGAAATGAAAATAA
1 AAAATAAAATAATAAAA-TAAAATAAAAAT-A
86334276 AAAATAAAATAAAATAAAATAAAATAAAAATA
1 AAAATAAAAT--AATAAAATAAAATAAAAATA
* *
86334308 AGAATAAAAAAATAA
1 AAAATAAAATAATAA
86334323 GAGGATTCAA
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
30 5 0.12
32 19 0.46
33 10 0.24
34 7 0.17
ACGTcount: A:0.77, C:0.00, G:0.04, T:0.19
Consensus pattern (30 bp):
AAAATAAAATAATAAAATAAAATAAAAATA
Found at i:86334307 original size:6 final size:6
Alignment explanation
Indices: 86334264--86334317 Score: 53
Period size: 6 Copynumber: 9.5 Consensus size: 6
86334254 AATAAAATTG
*
86334264 AAATGA AAATAA AAA-ATA AAAT-A AAAT-A AAAT-A AAATAA AAATAA
1 AAATAA AAATAA AAATA-A AAATAA AAATAA AAATAA AAATAA AAATAA
*
86334309 GAATAA AAA
1 AAATAA AAA
86334318 AATAAGAGGA
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
5 16 0.38
6 26 0.62
ACGTcount: A:0.80, C:0.00, G:0.04, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:86334319 original size:15 final size:15
Alignment explanation
Indices: 86334278--86334324 Score: 53
Period size: 14 Copynumber: 3.1 Consensus size: 15
86334268 GAAAATAAAA
86334278 AATAAAATAAAATAA-
1 AATAAAA-AAAATAAG
86334293 AATAAAATAAAAATAAG
1 AAT-AAA-AAAAATAAG
86334310 AAT-AAAAAAATAAG
1 AATAAAAAAAATAAG
86334324 A
1 A
86334325 GGATTCAATG
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
14 10 0.34
15 5 0.17
16 10 0.34
17 4 0.14
ACGTcount: A:0.79, C:0.00, G:0.04, T:0.17
Consensus pattern (15 bp):
AATAAAAAAAATAAG
Found at i:86345478 original size:24 final size:23
Alignment explanation
Indices: 86345434--86345478 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 23
86345424 TACATCAGTG
86345434 AAAGATTTATTGATTAGAAGCGT
1 AAAGATTTATTGATTAGAAGCGT
*
86345457 AAAGAGTTTCTTGAATTA-AAGC
1 AAAGA-TTTATTG-ATTAGAAGC
86345479 AGGGGAACAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 5 0.26
24 10 0.53
25 4 0.21
ACGTcount: A:0.40, C:0.07, G:0.20, T:0.33
Consensus pattern (23 bp):
AAAGATTTATTGATTAGAAGCGT
Found at i:86360128 original size:28 final size:28
Alignment explanation
Indices: 86360059--86360159 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
86360049 GACAAGATTG
* * * *
86360059 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
86360089 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
86360117 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
86360146 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
86360160 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:86368050 original size:28 final size:28
Alignment explanation
Indices: 86367981--86368081 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
86367971 GACAAGATTG
* * * *
86367981 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
86368011 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
86368039 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
86368068 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
86368082 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:86375188 original size:40 final size:40
Alignment explanation
Indices: 86375060--86375249 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
86375050 ATTAATTATA
* *
86375060 CCTTGAATTGCATATACGTGCCCCTGTTTGTACTTCGATAC
1 CCTTGAATTGCACATACATGCCCCTG-TTGTACTTCGATAC
* * * * *
86375101 CCCTGAATTGTACAGACATGCCCCTATTTGTACTTTGATAC
1 CCTTGAATTGCACATACATGCCCCT-GTTGTACTTCGATAC
*
86375142 CCTTGAATTGCACATACATGCCCCTGTTGTACTTCGGTAC
1 CCTTGAATTGCACATACATGCCCCTGTTGTACTTCGATAC
* * * *
86375182 CATTGAATAGCACATACTTGCCCCTGTTGTACTTCGGTAC
1 CCTTGAATTGCACATACATGCCCCTGTTGTACTTCGATAC
* * *
86375222 CGTTGAATAGCACATACTTGCCCCTGTT
1 CCTTGAATTGCACATACATGCCCCTGTT
86375250 TACACTCTAG
Statistics
Matches: 131, Mismatches: 17, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
40 76 0.58
41 55 0.42
ACGTcount: A:0.22, C:0.28, G:0.17, T:0.34
Consensus pattern (40 bp):
CCTTGAATTGCACATACATGCCCCTGTTGTACTTCGATAC
Found at i:86376471 original size:28 final size:28
Alignment explanation
Indices: 86376438--86376499 Score: 106
Period size: 28 Copynumber: 2.2 Consensus size: 28
86376428 CTGGTATGAG
*
86376438 TATGAAAATGGTTCGGCTAGGCTTGGAT
1 TATGAAAATGGTTCAGCTAGGCTTGGAT
86376466 TATGAAAATGGTTCAGCTAGGCTTGGAT
1 TATGAAAATGGTTCAGCTAGGCTTGGAT
*
86376494 TTTGAA
1 TATGAA
86376500 GAAGTTGAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.27, C:0.10, G:0.29, T:0.34
Consensus pattern (28 bp):
TATGAAAATGGTTCAGCTAGGCTTGGAT
Found at i:86381926 original size:43 final size:43
Alignment explanation
Indices: 86381828--86381999 Score: 156
Period size: 43 Copynumber: 4.0 Consensus size: 43
86381818 CATAGGATTC
* * *
86381828 CGATATGTGATTTA-GTGTAAGACCACGTCTGGGACGTTGGCAT
1 CGATATTTGATTTACGTGTAAGACCATGTCTGGGAC-ATGGCAT
* * *
86381871 CGAT-TTGAGATTTACGTCTAAGACCATGTCTGGGACATCGACAT
1 CGATATT-TGATTTACGTGTAAGACCATGTCTGGGACAT-GGCAT
* *
86381915 C-ATATTTGATTT-CGTGTAAGACCCTGTCTAGGACAGTGGCAT
1 CGATATTTGATTTACGTGTAAGACCATGTCTGGGACA-TGGCAT
* * * *
86381957 CGATATTTGA-TTACATGTATGACCATATCTAGGACATTGGCAT
1 CGATATTTGATTTACGTGTAAGACCATGTCTGGGACA-TGGCAT
86382000 TGTACGAGCT
Statistics
Matches: 106, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
42 28 0.26
43 52 0.49
44 26 0.25
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (43 bp):
CGATATTTGATTTACGTGTAAGACCATGTCTGGGACATGGCAT
Found at i:86385584 original size:35 final size:35
Alignment explanation
Indices: 86385544--86385699 Score: 161
Period size: 35 Copynumber: 4.5 Consensus size: 35
86385534 CAAAGTTCAT
*
86385544 TATATCATCACATATGGCCAAATATACAAGTATGA
1 TATATCATCACATATGGCCAAATATACAAGTATAA
* * * *
86385579 TATATCATCATATATGACCGAATATACAAGCT-CAA
1 TATATCATCACATATGGCCAAATATACAAG-TATAA
* * * * * * *
86385614 TAAAACATCACATGTAGTCAAATATTCAAGTTTAA
1 TATATCATCACATATGGCCAAATATACAAGTATAA
* * *
86385649 TATAACATCACATGTGGCCAAATATACAAGTTTAA
1 TATATCATCACATATGGCCAAATATACAAGTATAA
86385684 TATATCATCACATATG
1 TATATCATCACATATG
86385700 TACATACCTA
Statistics
Matches: 98, Mismatches: 21, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
34 1 0.01
35 96 0.98
36 1 0.01
ACGTcount: A:0.43, C:0.17, G:0.10, T:0.30
Consensus pattern (35 bp):
TATATCATCACATATGGCCAAATATACAAGTATAA
Found at i:86386503 original size:29 final size:30
Alignment explanation
Indices: 86386442--86386496 Score: 87
Period size: 28 Copynumber: 1.9 Consensus size: 30
86386432 TAATCCATAT
*
86386442 ATTTAATTTATTTTTCATTTTAGTCCTTCA
1 ATTTAATTTATTTTTCAATTTAGTCCTTCA
86386472 ATTT-ATTT-TTTTTCAATTTAGTCCT
1 ATTTAATTTATTTTTCAATTTAGTCCT
86386497 AATAATTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
28 16 0.67
29 4 0.17
30 4 0.17
ACGTcount: A:0.22, C:0.13, G:0.04, T:0.62
Consensus pattern (30 bp):
ATTTAATTTATTTTTCAATTTAGTCCTTCA
Found at i:86389652 original size:40 final size:40
Alignment explanation
Indices: 86389604--86389769 Score: 255
Period size: 40 Copynumber: 4.2 Consensus size: 40
86389594 GGACTAAGAT
* *
86389604 CCGAAGGCATTTGTGCTAGTGACTATATTCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTC
* *
86389644 TCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTC
*
86389684 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTC
*
86389724 CCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCGAG-TGACTATATCCGGGCTAAGTC
86389763 CCGAAGG
1 CCGAAGG
86389770 TACTTGGGTT
Statistics
Matches: 118, Mismatches: 7, Indels: 3
0.92 0.05 0.02
Matches are distributed among these distances:
39 15 0.13
40 102 0.86
41 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTC
Found at i:86398467 original size:46 final size:45
Alignment explanation
Indices: 86398385--86398514 Score: 154
Period size: 46 Copynumber: 2.8 Consensus size: 45
86398375 ACATTGGGTG
* * *
86398385 ATATGTGTGCTAGTGTAAGACATGTTTGGGAGATGCATCGGCCA-T
1 ATATGAGTGCTAGTGTAAGACATGTCTGGGACATGCATCGG-CATT
*
86398430 ATTATGAGTGCTAGTGTAAGACATGTCTAGGACATGCATCGGCATT
1 A-TATGAGTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCATT
* * * *
86398476 GAGACGAGAGCTAGTGTAAAACATGTCTGGGACATGCAT
1 -ATATGAGTGCTAGTGTAAGACATGTCTGGGACATGCAT
86398515 TAGCCTCAAG
Statistics
Matches: 73, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
45 3 0.04
46 69 0.95
47 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (45 bp):
ATATGAGTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCATT
Found at i:86406716 original size:41 final size:41
Alignment explanation
Indices: 86406650--86406792 Score: 180
Period size: 41 Copynumber: 3.5 Consensus size: 41
86406640 TTATACCCTA
* * * * *
86406650 AATTGCACATGCGTGCACCTATTTGTACTTTAGTTCCCCAG
1 AATTGCACATACGTGCCCCTGTTTGTACTTCAGTACCCCAG
86406691 AATTGCACATACGTGCCCCTGTTTGTACTTCAGTACCCCTA-
1 AATTGCACATACGTGCCCCTGTTTGTACTTCAGTACCCC-AG
* * * *
86406732 AATTGCACATATGTGCCTCTGTTTGTACTTCGGTACCCCTG
1 AATTGCACATACGTGCCCCTGTTTGTACTTCAGTACCCCAG
*
86406773 AATAGCACATACGTGCCCCT
1 AATTGCACATACGTGCCCCT
86406793 ATTTACACTC
Statistics
Matches: 88, Mismatches: 12, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
41 87 0.99
42 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.17, T:0.32
Consensus pattern (41 bp):
AATTGCACATACGTGCCCCTGTTTGTACTTCAGTACCCCAG
Found at i:86410634 original size:17 final size:17
Alignment explanation
Indices: 86410614--86410649 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
86410604 TAATTTAAAT
*
86410614 AATTAATTAAATTTCTC
1 AATTAAATAAATTTCTC
*
86410631 AATTAAATAATTTTCTC
1 AATTAAATAAATTTCTC
86410648 AA
1 AA
86410650 CTCAATTTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.44, C:0.11, G:0.00, T:0.44
Consensus pattern (17 bp):
AATTAAATAAATTTCTC
Found at i:86414854 original size:20 final size:20
Alignment explanation
Indices: 86414825--86414868 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
86414815 TGTGTACGTA
* *
86414825 GGTATCGATATTGACTCTAG
1 GGTATCGATACTGACACTAG
*
86414845 GGTATTGATACTGACACTAG
1 GGTATCGATACTGACACTAG
86414865 GGTA
1 GGTA
86414869 CGGATATTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.32
Consensus pattern (20 bp):
GGTATCGATACTGACACTAG
Found at i:86414874 original size:20 final size:20
Alignment explanation
Indices: 86414831--86414874 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
86414821 CGTAGGTATC
* * **
86414831 GATATTGACTCTAGGGTATT
1 GATACTGACACTAGGGTACG
86414851 GATACTGACACTAGGGTACG
1 GATACTGACACTAGGGTACG
86414871 GATA
1 GATA
86414875 TTTTCTCTAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (20 bp):
GATACTGACACTAGGGTACG
Found at i:86421754 original size:27 final size:27
Alignment explanation
Indices: 86421716--86421770 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
86421706 GGAAATTGAG
86421716 TAAGTGTGAGTTTTGGTTAACGGAGGT
1 TAAGTGTGAGTTTTGGTTAACGGAGGT
*
86421743 TAAGTGTGAGTTTTGGTTAATGGAGGT
1 TAAGTGTGAGTTTTGGTTAACGGAGGT
86421770 T
1 T
86421771 GTATTCCTTG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.22, C:0.02, G:0.36, T:0.40
Consensus pattern (27 bp):
TAAGTGTGAGTTTTGGTTAACGGAGGT
Found at i:86425297 original size:12 final size:12
Alignment explanation
Indices: 86425280--86425305 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
86425270 TGTGTACCAC
86425280 TATTGTTACTGT
1 TATTGTTACTGT
86425292 TATTGTTACTGT
1 TATTGTTACTGT
86425304 TA
1 TA
86425306 CCCTTACTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.19, C:0.08, G:0.15, T:0.58
Consensus pattern (12 bp):
TATTGTTACTGT
Found at i:86428962 original size:30 final size:31
Alignment explanation
Indices: 86428928--86428996 Score: 81
Period size: 30 Copynumber: 2.3 Consensus size: 31
86428918 TTGTACAAGA
*
86428928 GTAAATACTCAAAA-TTT-AAGAGGCTAA-AGT
1 GTAAATA-TCAAAATTTTGAAG-GACTAATAGT
*
86428958 GTAAATATGAAAATTTTGAAGGACTAATAGT
1 GTAAATATCAAAATTTTGAAGGACTAATAGT
86428989 GTAAATAT
1 GTAAATAT
86428997 TTTAAGGGTG
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
29 5 0.15
30 15 0.44
31 14 0.41
ACGTcount: A:0.46, C:0.06, G:0.17, T:0.30
Consensus pattern (31 bp):
GTAAATATCAAAATTTTGAAGGACTAATAGT
Found at i:86429279 original size:8 final size:8
Alignment explanation
Indices: 86429262--86429300 Score: 55
Period size: 8 Copynumber: 5.0 Consensus size: 8
86429252 TTTTAAATGA
86429262 TATT-TTT
1 TATTATTT
86429269 TATTATTT
1 TATTATTT
86429277 TATTATTT
1 TATTATTT
86429285 TATTATTAT
1 TATTATT-T
86429294 T-TTATTT
1 TATTATTT
86429301 AGTATATATA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
7 5 0.17
8 23 0.77
9 2 0.07
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (8 bp):
TATTATTT
Found at i:86429292 original size:19 final size:18
Alignment explanation
Indices: 86429262--86429299 Score: 67
Period size: 19 Copynumber: 2.1 Consensus size: 18
86429252 TTTTAAATGA
86429262 TATTTTTTATTATTTTAT
1 TATTTTTTATTATTTTAT
86429280 TATTTTATTATTATTTTAT
1 TATTTT-TTATTATTTTAT
86429299 T
1 T
86429300 TAGTATATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 6 0.32
19 13 0.68
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (18 bp):
TATTTTTTATTATTTTAT
Found at i:86430973 original size:33 final size:32
Alignment explanation
Indices: 86430896--86430973 Score: 77
Period size: 33 Copynumber: 2.4 Consensus size: 32
86430886 AGCAATATAT
* *
86430896 GTGTAAGACCATAGCTAGGTTATGGCATCTTG
1 GTGTAAGACCATAGCTAGGATATGGCATCTCG
* * *
86430928 CTGATAAAACCATATCTAGGATATGGCA-CTACG
1 GTG-TAAGACCATAGCTAGGATATGGCATCT-CG
86430961 AGTGTAAGACCAT
1 -GTGTAAGACCAT
86430974 GGCTGGGCCA
Statistics
Matches: 36, Mismatches: 7, Indels: 5
0.75 0.15 0.10
Matches are distributed among these distances:
32 4 0.11
33 30 0.83
34 2 0.06
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (32 bp):
GTGTAAGACCATAGCTAGGATATGGCATCTCG
Found at i:86431101 original size:44 final size:45
Alignment explanation
Indices: 86431024--86431127 Score: 129
Period size: 44 Copynumber: 2.3 Consensus size: 45
86431014 CTGTGGCATC
* *
86431024 ACCATAGCTGAAAAACGCTATGGCATCAAGATTCAGACGAGTAAG
1 ACCATAGCTGAAAGACGCTATGGCATCAAGATTCAAACGAGTAAG
** * *
86431069 ACCATAGCTGAAAGAC-CTATGGCATCGTGATTCAAATGTGTAAG
1 ACCATAGCTGAAAGACGCTATGGCATCAAGATTCAAACGAGTAAG
* *
86431113 ACCATGGTTGAAAGA
1 ACCATAGCTGAAAGA
86431128 TACCATGGCA
Statistics
Matches: 51, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 36 0.71
45 15 0.29
ACGTcount: A:0.38, C:0.18, G:0.23, T:0.21
Consensus pattern (45 bp):
ACCATAGCTGAAAGACGCTATGGCATCAAGATTCAAACGAGTAAG
Found at i:86431161 original size:46 final size:46
Alignment explanation
Indices: 86431109--86431326 Score: 337
Period size: 46 Copynumber: 4.7 Consensus size: 46
86431099 TTCAAATGTG
86431109 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAA
*
86431155 TAAGACCATGCTTGAAAGATACCATGGCAACATGACAGGAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAA
* *
86431201 TAAGACCATGCTTGAAAGATACCATGGCAACATGATAGGAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAA
* * * *
86431247 TAAGACCTTGGTTGAAAGATATCATGGCAACATGACAGAAAATGAG
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAA
* * * *
86431293 TAAGACCATAGTTGAAAGACACTATGGCATCATG
1 TAAGACCATGGTTGAAAGATACCATGGCAACATG
86431327 TCGAAGATAA
Statistics
Matches: 158, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 158 1.00
ACGTcount: A:0.42, C:0.16, G:0.22, T:0.20
Consensus pattern (46 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAA
Found at i:86431548 original size:15 final size:15
Alignment explanation
Indices: 86431530--86431566 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
86431520 TAAACAAAAT
86431530 AAGTATAGGTACATG
1 AAGTATAGGTACATG
86431545 AAGTATAGGTACATG
1 AAGTATAGGTACATG
*
86431560 AAATATA
1 AAGTATA
86431567 AGCAGAGAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.46, C:0.05, G:0.22, T:0.27
Consensus pattern (15 bp):
AAGTATAGGTACATG
Found at i:86435610 original size:2 final size:2
Alignment explanation
Indices: 86435603--86435629 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
86435593 TTCTCCTTTG
86435603 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
86435630 TAAATTCCCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:86442156 original size:2 final size:2
Alignment explanation
Indices: 86442144--86442177 Score: 59
Period size: 2 Copynumber: 16.5 Consensus size: 2
86442134 AACCCAAGAT
86442144 TC TC ATC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC -TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
86442178 ATATATATAT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 29 0.94
3 2 0.06
ACGTcount: A:0.03, C:0.47, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:86443536 original size:16 final size:18
Alignment explanation
Indices: 86443510--86443546 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
86443500 GTTTTATTAA
86443510 TTTTGTTAGGG-TTAAAG
1 TTTTGTTAGGGATTAAAG
*
86443527 TTTT-TTAGGGATTAAGG
1 TTTTGTTAGGGATTAAAG
86443544 TTT
1 TTT
86443547 AAAGGGTGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 6 0.33
17 12 0.67
ACGTcount: A:0.22, C:0.00, G:0.27, T:0.51
Consensus pattern (18 bp):
TTTTGTTAGGGATTAAAG
Found at i:86451870 original size:5 final size:5
Alignment explanation
Indices: 86451855--86451884 Score: 51
Period size: 5 Copynumber: 5.8 Consensus size: 5
86451845 CTTTTTAGGT
86451855 ATAATA ATAAA ATAAA ATAAA ATAAA ATAA
1 ATAA-A ATAAA ATAAA ATAAA ATAAA ATAA
86451885 CTAAATTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 20 0.83
6 4 0.17
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (5 bp):
ATAAA
Found at i:86452030 original size:3 final size:3
Alignment explanation
Indices: 86452017--86452075 Score: 73
Period size: 3 Copynumber: 19.3 Consensus size: 3
86452007 TTACTTAGTA
* *
86452017 CTT CGT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTTT CTT CAT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT C-TT CTT CTT CTT
* *
86452063 CAT CTT CAT CTT C
1 CTT CTT CTT CTT C
86452076 ATTTCAGTGT
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
3 44 0.94
4 3 0.06
ACGTcount: A:0.05, C:0.34, G:0.02, T:0.59
Consensus pattern (3 bp):
CTT
Found at i:86462224 original size:64 final size:64
Alignment explanation
Indices: 86462123--86462251 Score: 258
Period size: 64 Copynumber: 2.0 Consensus size: 64
86462113 TATTAATGGC
86462123 GTCAAAAAGAATACTGAAGGAGCTCAAGGAATTGCAAAGAGATCCTCCAGCTTCATGCAGTGCA
1 GTCAAAAAGAATACTGAAGGAGCTCAAGGAATTGCAAAGAGATCCTCCAGCTTCATGCAGTGCA
86462187 GTCAAAAAGAATACTGAAGGAGCTCAAGGAATTGCAAAGAGATCCTCCAGCTTCATGCAGTGCA
1 GTCAAAAAGAATACTGAAGGAGCTCAAGGAATTGCAAAGAGATCCTCCAGCTTCATGCAGTGCA
86462251 G
1 G
86462252 GTAAGAGTTA
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
64 65 1.00
ACGTcount: A:0.37, C:0.20, G:0.24, T:0.19
Consensus pattern (64 bp):
GTCAAAAAGAATACTGAAGGAGCTCAAGGAATTGCAAAGAGATCCTCCAGCTTCATGCAGTGCA
Found at i:86463341 original size:11 final size:10
Alignment explanation
Indices: 86463302--86463340 Score: 60
Period size: 10 Copynumber: 3.8 Consensus size: 10
86463292 ATTTCTTTAA
*
86463302 TTTTAATATAT
1 TTTTAAAAT-T
86463313 TTTTAAAATT
1 TTTTAAAATT
86463323 TTTTAAAATT
1 TTTTAAAATT
86463333 TTTTAAAA
1 TTTTAAAA
86463341 AATATAAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
10 19 0.70
11 8 0.30
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (10 bp):
TTTTAAAATT
Found at i:86466603 original size:11 final size:11
Alignment explanation
Indices: 86466589--86466638 Score: 68
Period size: 11 Copynumber: 4.7 Consensus size: 11
86466579 TTTCAATATT
86466589 CTCTCAAATTC
1 CTCTCAAATTC
86466600 CTCTCAAA-T-
1 CTCTCAAATTC
*
86466609 CTCTCAAATTT
1 CTCTCAAATTC
*
86466620 CTCTTAAATTC
1 CTCTCAAATTC
86466631 CTCTCAAA
1 CTCTCAAA
86466639 ACTCTCGTTA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
9 8 0.24
10 2 0.06
11 24 0.71
ACGTcount: A:0.30, C:0.32, G:0.00, T:0.38
Consensus pattern (11 bp):
CTCTCAAATTC
Found at i:86466613 original size:20 final size:21
Alignment explanation
Indices: 86466581--86466638 Score: 73
Period size: 20 Copynumber: 2.7 Consensus size: 21
86466571 TCTTCAATTT
86466581 TCAATATTCTCTCAAATTCCTC
1 TCAA-ATTCTCTCAAATTCCTC
*
86466603 TCAAA-TCTCTCAAATTTCTC
1 TCAAATTCTCTCAAATTCCTC
*
86466623 TTAAATTCCTCTCAAA
1 TCAAATT-CTCTCAAA
86466639 ACTCTCGTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
20 18 0.56
21 2 0.06
22 12 0.38
ACGTcount: A:0.31, C:0.29, G:0.00, T:0.40
Consensus pattern (21 bp):
TCAAATTCTCTCAAATTCCTC
Found at i:86467809 original size:7 final size:7
Alignment explanation
Indices: 86467797--86467823 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
86467787 TAGTGGATTC
86467797 GTATTTA
1 GTATTTA
86467804 GTATTTA
1 GTATTTA
86467811 GTATTTA
1 GTATTTA
86467818 GTATTT
1 GTATTT
86467824 TTTATTTATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.26, C:0.00, G:0.15, T:0.59
Consensus pattern (7 bp):
GTATTTA
Found at i:86468783 original size:27 final size:28
Alignment explanation
Indices: 86468746--86468881 Score: 176
Period size: 27 Copynumber: 5.0 Consensus size: 28
86468736 AGCATGGCTG
* *
86468746 CCAGA-ACAGATA-ATGTGACAGAGTCA
1 CCAGATACAGATATATGTGGCAGAGCCA
86468772 CCAGATACAGATA-ATCGTGGCAGAGCCA
1 CCAGATACAGATATAT-GTGGCAGAGCCA
86468800 CCAGA-ACAGATATATGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
*
86468827 CCAGAT-CAGATATTTGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
* *
86468854 CCAGAT-CAGATATTTGTGGCATAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
86468881 C
1 C
86468882 TAGAACGCTT
Statistics
Matches: 102, Mismatches: 4, Indels: 7
0.90 0.04 0.06
Matches are distributed among these distances:
26 5 0.05
27 80 0.78
28 17 0.17
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (28 bp):
CCAGATACAGATATATGTGGCAGAGCCA
Found at i:86470539 original size:26 final size:26
Alignment explanation
Indices: 86470500--86470609 Score: 177
Period size: 26 Copynumber: 4.2 Consensus size: 26
86470490 CATGAAATTC
*
86470500 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
86470526 TTATCAT-GATACATTTACCTAACCCA
1 TTATCATGGA-ACATTTACCTAACCCA
*
86470552 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCCA
*
86470578 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCCA
86470604 TTATCA
1 TTATCA
86470610 ATTTGTATCA
Statistics
Matches: 80, Mismatches: 2, Indels: 4
0.93 0.02 0.05
Matches are distributed among these distances:
25 1 0.01
26 77 0.96
27 2 0.03
ACGTcount: A:0.35, C:0.25, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCCA
Found at i:86471478 original size:30 final size:30
Alignment explanation
Indices: 86471437--86471502 Score: 89
Period size: 30 Copynumber: 2.2 Consensus size: 30
86471427 CGATGACGCA
*
86471437 GGCCCATCAACAGCG-CCCACACAATCACCC
1 GGCCCAGCAACAG-GACCCACACAATCACCC
* *
86471467 GGCCCAGCAACAGGACCTACACAATCACCG
1 GGCCCAGCAACAGGACCCACACAATCACCC
86471497 GGCCCA
1 GGCCCA
86471503 ACAGTTCAAC
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
29 1 0.03
30 31 0.97
ACGTcount: A:0.30, C:0.45, G:0.18, T:0.06
Consensus pattern (30 bp):
GGCCCAGCAACAGGACCCACACAATCACCC
Found at i:86471579 original size:18 final size:18
Alignment explanation
Indices: 86471556--86471598 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
86471546 TGCCAGGTAC
*
86471556 GTATCCTAGCCCTTTTAT
1 GTATCCTAGCCCTTATAT
86471574 GTATCCTAGCCCTTATAT
1 GTATCCTAGCCCTTATAT
*
86471592 GTTTCCT
1 GTATCCT
86471599 TTTTCTAGTC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.16, C:0.28, G:0.12, T:0.44
Consensus pattern (18 bp):
GTATCCTAGCCCTTATAT
Found at i:86472118 original size:61 final size:61
Alignment explanation
Indices: 86472051--86472235 Score: 194
Period size: 61 Copynumber: 3.1 Consensus size: 61
86472041 TTTTGAATAT
*
86472051 TTTTATATTATTTCATGTGATAATATAAAAGGTTGTTCTAAATAAAGTAATTATAATTTAC
1 TTTTATATTATTTCATGTGATAATATAAAAGGTTGTTTTAAATAAAGTAATTATAATTTAC
* * * * * *
86472112 TTTTATATT-TTT-A----ATAAAATGGAAA--TTCTTTTAAATAAGGCAACATTTTGAA--TA-
1 TTTTATATTATTTCATGTGATAATAT-AAAAGGTTGTTTTAAATAAAG-TA-ATTAT-AATTTAC
86472166 TTTTATATTATTTCATGTGATAATATAAAAGGTTGTTTTAAATAAAGTAATTATAATTTAC
1 TTTTATATTATTTCATGTGATAATATAAAAGGTTGTTTTAAATAAAGTAATTATAATTTAC
86472227 TTTTATATT
1 TTTTATATT
86472236 TTTAATAAAA
Statistics
Matches: 96, Mismatches: 13, Indels: 30
0.69 0.09 0.22
Matches are distributed among these distances:
54 21 0.22
55 12 0.12
56 8 0.08
57 2 0.02
58 2 0.02
59 8 0.08
60 12 0.12
61 31 0.32
ACGTcount: A:0.39, C:0.04, G:0.09, T:0.48
Consensus pattern (61 bp):
TTTTATATTATTTCATGTGATAATATAAAAGGTTGTTTTAAATAAAGTAATTATAATTTAC
Found at i:86472246 original size:115 final size:116
Alignment explanation
Indices: 86471804--86472304 Score: 860
Period size: 116 Copynumber: 4.3 Consensus size: 116
86471794 TATTTGTACA
* *
86471804 AACATTTTGAATCTTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATAAGATAAAAGGTTGTTTTAAATAAAGTAAT
*
86471869 TGTAATTTACTTTTATATTTTTTAATAAAATGGAAATTATTTTAAATAAGGC
66 TATAATTTACTTTTATA-TTTTTAATAAAATGGAAATTATTTTAAATAAGGC
* *
86471921 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAAGTTGTTTTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATAAGATAAAAGGTTGTTTTAAATAAAGTAAT
86471986 TATAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
66 TATAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
* * *
86472037 AACATTTTGAATATTTTTATATTATTTCATGTGATAATATAAAAGGTTGTTCTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATAAGATAAAAGGTTGTTTTAAATAAAGTAAT
*
86472102 TATAATTTACTTTTATATTTTTAATAAAATGGAAATTCTTTTAAATAAGGC
66 TATAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
* *
86472153 AACATTTTGAATA-TTTTATATTATTTCATGTGATAATATAAAAGGTTGTTTTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATAAGATAAAAGGTTGTTTTAAATAAAGTAAT
* *
86472217 TATAATTTACTTTTATATTTTTAATAAAATGAAAATTATTTTAAATAAAGC
66 TATAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
*
86472268 AATATTTTGAATATTTTTATATTATTTCATGTAATAA
1 AACATTTTGAATATTTTTATATTATTTCATGTAATAA
86472305 AATATAAATA
Statistics
Matches: 368, Mismatches: 15, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
115 110 0.30
116 179 0.49
117 79 0.21
ACGTcount: A:0.40, C:0.04, G:0.09, T:0.47
Consensus pattern (116 bp):
AACATTTTGAATATTTTTATATTATTTCATGTAATAAGATAAAAGGTTGTTTTAAATAAAGTAAT
TATAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
Found at i:86472257 original size:231 final size:233
Alignment explanation
Indices: 86471804--86472304 Score: 862
Period size: 231 Copynumber: 2.2 Consensus size: 233
86471794 TATTTGTACA
* * *
86471804 AACATTTTGAATCTTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATAAGATAAAAGGTTGTTCTAAATAAAGTAAT
*
86471869 TGTAATTTACTTTTATATTTTTTAATAAAATGGAAATTATTTTAAATAAGGCAACATTTTGAATA
66 TATAATTTACTTTTATATTTTTTAATAAAATGGAAATTATTTTAAATAAGGCAACATTTTGAATA
*
86471934 TTTTTATATTATTTCATGTAATTAGATAAAAAGTTGTTTTAAATAAAGTAATTATAATTTACTTT
131 TTTTTATATTATTTCATGTAATAAGATAAAAAGTTGTTTTAAATAAAGTAATTATAATTTACTTT
* *
86471999 TATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
196 TATATTTTTAATAAAATGAAAATTATTTTAAATAAAGC
* *
86472037 AACATTTTGAATATTTTTATATTATTTCATGTGATAATATAAAAGGTTGTTCTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATAAGATAAAAGGTTGTTCTAAATAAAGTAAT
*
86472102 TATAATTTACTTTTATA-TTTTTAATAAAATGGAAATTCTTTTAAATAAGGCAACATTTTGAATA
66 TATAATTTACTTTTATATTTTTTAATAAAATGGAAATTATTTTAAATAAGGCAACATTTTGAATA
* * *
86472166 -TTTTATATTATTTCATGTGATAATATAAAAGGTTGTTTTAAATAAAGTAATTATAATTTACTTT
131 TTTTTATATTATTTCATGTAATAAGATAAAAAGTTGTTTTAAATAAAGTAATTATAATTTACTTT
86472230 TATATTTTTAATAAAATGAAAATTATTTTAAATAAAGC
196 TATATTTTTAATAAAATGAAAATTATTTTAAATAAAGC
*
86472268 AATATTTTGAATATTTTTATATTATTTCATGTAATAA
1 AACATTTTGAATATTTTTATATTATTTCATGTAATAA
86472305 AATATAAATA
Statistics
Matches: 253, Mismatches: 15, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
231 131 0.52
232 46 0.18
233 76 0.30
ACGTcount: A:0.40, C:0.04, G:0.09, T:0.47
Consensus pattern (233 bp):
AACATTTTGAATATTTTTATATTATTTCATGTAATAAGATAAAAGGTTGTTCTAAATAAAGTAAT
TATAATTTACTTTTATATTTTTTAATAAAATGGAAATTATTTTAAATAAGGCAACATTTTGAATA
TTTTTATATTATTTCATGTAATAAGATAAAAAGTTGTTTTAAATAAAGTAATTATAATTTACTTT
TATATTTTTAATAAAATGAAAATTATTTTAAATAAAGC
Found at i:86475537 original size:126 final size:125
Alignment explanation
Indices: 86475307--86475840 Score: 797
Period size: 126 Copynumber: 4.3 Consensus size: 125
86475297 GCCCAAGTTA
* * *
86475307 TTTCAGAAACCACTGTAGCAAAAGAGCGCCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAA
1 TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGT-GGAGCTTCTTTCAGTACTTTTGCTGAAAA
* * **
86475372 TGCATCCTACTTGAAGCGTTTTTGACACTATTTATGCAGACACGTCTTCTCAAAATTATTT
65 TGCATCCTGCTTGAAGCATTTTTGACACTATTTGCGCAGACACGTCTTCTCAAAATTATTT
* * * * *
86475433 TTTCAGAGACCACTGTAGCAAAAGAGCATCCACGTAGGAGATTCTTCCAGTAATTTTGCTGAAAA
1 TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGT-GGAGCTTCTTTCAGTACTTTTGCTGAAAA
* *
86475498 TGTATCCTGCTTGAAGCATTTTT-ACCACTATTTGCGCAGACACATCTTCTCAAAATTATTT
65 TGCATCCTGCTTGAAGCATTTTTGA-CACTATTTGCGCAGACACGTCTTCTCAAAATTATTT
86475559 TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTCTTTCAGTACTTTTGCT-AACA
1 TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGTGG-AGCTTCTTTCAGTACTTTTGCTGAA-A
* *
86475623 ATGCATCCTGCTTGAAGCATTTTTTACACTATTTGCACAGACACGTCTTCTCAAAATTA-TT
64 ATGCATCCTGCTTGAAGCATTTTTGACACTATTTGCGCAGACACGTCTTCTCAAAATTATTT
* *
86475684 TTTCAGATACTACTGTAGCAAAA-AGCGTCCACGTGAGAGCTTCTTTCAGTACTTTTGCTGACAA
1 TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGTG-GAGCTTCTTTCAGTACTTTTGCTGAAAA
* *
86475748 TGCATCCTGCTTGAAGCGTTTTTGACACTATTTGCGCAGACACGTCTTCTCAAATTTATTT
65 TGCATCCTGCTTGAAGCATTTTTGACACTATTTGCGCAGACACGTCTTCTCAAAATTATTT
*
86475809 TTTCAGAGACTACTGTAGCAAAAGAACGTCCA
1 TTTCAGAGACTACTGTAGCAAAAGAGCGTCCA
86475841 TGTAGAAGCT
Statistics
Matches: 371, Mismatches: 29, Indels: 16
0.89 0.07 0.04
Matches are distributed among these distances:
124 90 0.24
125 55 0.15
126 225 0.61
127 1 0.00
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.33
Consensus pattern (125 bp):
TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGTGGAGCTTCTTTCAGTACTTTTGCTGAAAAT
GCATCCTGCTTGAAGCATTTTTGACACTATTTGCGCAGACACGTCTTCTCAAAATTATTT
Found at i:86475851 original size:250 final size:252
Alignment explanation
Indices: 86475307--86475851 Score: 812
Period size: 250 Copynumber: 2.2 Consensus size: 252
86475297 GCCCAAGTTA
* * * *
86475307 TTTCAGAAACCACTGTAGCAAAAGAGCGCCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAA
1 TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTCTTTCAGTACTTTTGCTGAAAA
* **
86475372 TGCATCCTACTTGAAGCGTTTTTGACACTATTTATGCAGACACGTCTTCTCAAAATTATTTTTTC
66 TGCATCCTACTTGAAGCATTTTTGACACTATTTACACAGACACGTCTTCTCAAAATTATTTTTTC
*
86475437 AGAGACCACTGTAGCAAAAGAGCATCCACGTAGGAGATTCTTCCAGTAATTTTGCTGAAAATGTA
131 AGAGACCACTGTAGCAAAAGAGCATCCACGTAGGAGATTCTTCCAGTAATTTTGCTGAAAATGCA
86475502 TCCTGCTTGAAGCATTTTTACCACTATTTGCGCAGACACATCTTCTCAAAATTATTT
196 TCCTGCTTGAAGCATTTTTACCACTATTTGCGCAGACACATCTTCTCAAAATTATTT
86475559 TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTCTTTCAGTACTTTTGCT-AACA
1 TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTCTTTCAGTACTTTTGCTGAA-A
* * *
86475623 ATGCATCCTGCTTGAAGCATTTTTTACACTATTTGCACAGACACGTCTTCTCAAAATTA-TTTTT
65 ATGCATCCTACTTGAAGCATTTTTGACACTATTTACACAGACACGTCTTCTCAAAATTATTTTTT
* * * * * * *
86475687 CAGATACTACTGTAGCAAAA-AGCGTCCACGT-GAGAGCTTCTTTCAGTACTTTTGCTGACAATG
130 CAGAGACCACTGTAGCAAAAGAGCATCCACGTAG-GAGATTCTTCCAGTAATTTTGCTGAAAATG
* * *
86475750 CATCCTGCTTGAAGCGTTTTTGA-CACTATTTGCGCAGACACGTCTTCTCAAATTTATTT
194 CATCCTGCTTGAAGCATTTTT-ACCACTATTTGCGCAGACACATCTTCTCAAAATTATTT
* * *
86475809 TTTCAGAGACTACTGTAGCAAAAGAACGTCCATGTAGAAGCTT
1 TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGTGGAAGCTT
86475852 TTTTAGATTA
Statistics
Matches: 266, Mismatches: 24, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
249 1 0.00
250 129 0.48
251 26 0.10
252 110 0.41
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.33
Consensus pattern (252 bp):
TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTCTTTCAGTACTTTTGCTGAAAA
TGCATCCTACTTGAAGCATTTTTGACACTATTTACACAGACACGTCTTCTCAAAATTATTTTTTC
AGAGACCACTGTAGCAAAAGAGCATCCACGTAGGAGATTCTTCCAGTAATTTTGCTGAAAATGCA
TCCTGCTTGAAGCATTTTTACCACTATTTGCGCAGACACATCTTCTCAAAATTATTT
Found at i:86476055 original size:97 final size:98
Alignment explanation
Indices: 86475931--86476138 Score: 253
Period size: 97 Copynumber: 2.1 Consensus size: 98
86475921 TTAAATACTC
* * * * **
86475931 TAAAACCTTAAACCCTAAAATCCTAATCTAAATTTATTTAAATTTA-TAATTAATTTACTCAAGT
1 TAAAACCATAAACACTAAAATCCTAATCT-AATTTATTTAAAATTAGTAATTAATTTAATCAACA
* *
86475995 AACCCTAAACCCTAATTTATTTGA-TTTTTTCCT
65 AACACTAAACCCTAATTTATTTAATTTTTTTCCT
* *
86476028 TAAAAACCATAAACACT-AAA-CCATAATCTAATTTTTTTAAAATTAGTAATTAATTTAATTAAC
1 T-AAAACCATAAACACTAAAATCC-TAATCTAATTTATTTAAAATTAGTAATTAATTTAATCAAC
*
86476091 AAACACTAAACCTTAATTTATTTAATTTTTTTCCT
64 AAACACTAAACCCTAATTTATTTAATTTTTTTCCT
*
86476126 TAAAACCCTAAAC
1 TAAAACCATAAAC
86476139 TTTAAAAACC
Statistics
Matches: 95, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
96 16 0.17
97 56 0.59
98 23 0.24
ACGTcount: A:0.42, C:0.17, G:0.01, T:0.39
Consensus pattern (98 bp):
TAAAACCATAAACACTAAAATCCTAATCTAATTTATTTAAAATTAGTAATTAATTTAATCAACAA
ACACTAAACCCTAATTTATTTAATTTTTTTCCT
Found at i:86476148 original size:16 final size:17
Alignment explanation
Indices: 86476127--86476168 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
86476117 TTTTTTCCTT
*
86476127 AAAACCCTAAACTT-TA
1 AAAACCCTAAAATTCTA
*
86476143 AAAACCC-AAAATTCTC
1 AAAACCCTAAAATTCTA
86476159 AAAACCCTAA
1 AAAACCCTAA
86476169 CCCTAATTGC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
15 5 0.23
16 15 0.68
17 2 0.09
ACGTcount: A:0.52, C:0.29, G:0.00, T:0.19
Consensus pattern (17 bp):
AAAACCCTAAAATTCTA
Found at i:86476957 original size:14 final size:13
Alignment explanation
Indices: 86476932--86476956 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
86476922 TTCTTATACA
86476932 ATCTAAAAAAAAC
1 ATCTAAAAAAAAC
86476945 ATCTAAAAAAAA
1 ATCTAAAAAAAA
86476957 ATAGAGAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.12, G:0.00, T:0.16
Consensus pattern (13 bp):
ATCTAAAAAAAAC
Found at i:86478506 original size:14 final size:14
Alignment explanation
Indices: 86478484--86478526 Score: 59
Period size: 14 Copynumber: 3.1 Consensus size: 14
86478474 CTACAGGAGT
86478484 TTCTGAAAAAATAA
1 TTCTGAAAAAATAA
* * *
86478498 TTTTGAAAAGATGA
1 TTCTGAAAAAATAA
86478512 TTCTGAAAAAATAA
1 TTCTGAAAAAATAA
86478526 T
1 T
86478527 GTCAAAAATG
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.51, C:0.05, G:0.12, T:0.33
Consensus pattern (14 bp):
TTCTGAAAAAATAA
Found at i:86478617 original size:126 final size:126
Alignment explanation
Indices: 86478219--86478807 Score: 805
Period size: 125 Copynumber: 4.7 Consensus size: 126
86478209 AAGCTGGATG
* * * *
86478219 CTATTTTTCTACAGTA-ATTCTGAAAAAACAATTTTGAGAAGATGGTTATGAAAAAAT-GGGTAA
1 CTATTTTTCTACAGTAGTTTCTGAAAAAATAATTTTGAGAAGATGGTTCTGAAAAAATAGTGTAA
* * ** * * **
86478282 AAAACGCTTTAAGCAGGATATACTGTCAACAAAAGTAATGAAAAAAGCT--CACCTGGATG
66 AAAATGCTTCAAGCAGGATGCACTGTCAGCAAAAGTACTGAAAAAAGCTCCCACCTGGACA
* * * *
86478341 CTATTTTTCTACAGGAGTTTCTGAAACAATAATTTTGAGAAGATGGTTTTGAAAAAATAGGGTAA
1 CTATTTTTCTACAGTAGTTTCTGAAAAAATAATTTTGAGAAGATGGTTCTGAAAAAATAGTGTAA
** * *
86478406 AAAACACTTCAAGCAGGATGCACTTTCAGCAAAAGTACTG-AAAAAGCTCCCACATGGACA
66 AAAATGCTTCAAGCAGGATGCACTGTCAGCAAAAGTACTGAAAAAAGCTCCCACCTGGACA
* * * * *
86478466 CTATTTTTCTACAGGAGTTTCTGAAAAAATAATTTTGAAAAGATGATTCTGAAAAAATAATGTCA
1 CTATTTTTCTACAGTAGTTTCTGAAAAAATAATTTTGAGAAGATGGTTCTGAAAAAATAGTGTAA
*
86478531 AAAATGCTCCAAGCAGGATGCACTGTCAGCAAAAGTACTGAAAAAAGCTCCCACCTGGACA
66 AAAATGCTTCAAGCAGGATGCACTGTCAGCAAAAGTACTGAAAAAAGCTCCCACCTGGACA
* * * *
86478592 CTCTTTTTATACAGTAGTTTCTGAAAAAATAATTTTGAGAAGATGGTTCTTAAAAAATAGTGTCA
1 CTATTTTTCTACAGTAGTTTCTGAAAAAATAATTTTGAGAAGATGGTTCTGAAAAAATAGTGTAA
* * * * *
86478657 AAAATGCTTCAAGCAGGATGCACTGTCAGCAAAAGTACTAAAAAAAGCTTCAAGCTGGACG
66 AAAATGCTTCAAGCAGGATGCACTGTCAGCAAAAGTACTGAAAAAAGCTCCCACCTGGACA
86478718 CTATTTTTCTACAGTAGTTTCTG-AAAAATAATTTTGA-AATGATGGTTCTGAAAAAATAGTGTA
1 CTATTTTTCTACAGTAGTTTCTGAAAAAATAATTTTGAGAA-GATGGTTCTGAAAAAATAGTGTA
86478781 AAAAATGCTTCAAGCAGGATGCACTGT
65 AAAAATGCTTCAAGCAGGATGCACTGT
86478808 AACAACCCGT
Statistics
Matches: 417, Mismatches: 44, Indels: 9
0.89 0.09 0.02
Matches are distributed among these distances:
122 15 0.04
123 45 0.11
124 41 0.10
125 163 0.39
126 153 0.37
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Consensus pattern (126 bp):
CTATTTTTCTACAGTAGTTTCTGAAAAAATAATTTTGAGAAGATGGTTCTGAAAAAATAGTGTAA
AAAATGCTTCAAGCAGGATGCACTGTCAGCAAAAGTACTGAAAAAAGCTCCCACCTGGACA
Found at i:86478636 original size:251 final size:250
Alignment explanation
Indices: 86478209--86478812 Score: 817
Period size: 251 Copynumber: 2.4 Consensus size: 250
86478199 TACTGAAAAA
** * * * *
86478209 AAGCTGGATGCTATTTTTCTACAGTA-ATTCTGAAAAAACAATTTTGAGAAGATGGTTATGAAAA
1 AAGCTGGACACTATTTTTCTACAGTAGTTTCTGAAAAAATAATTTTGAAAAGATGGTTCTGAAAA
* * * **
86478273 AAT-GGGTAAAAAACGCTTTAAGCAGGATATACTGTCAACAAAAGTAATGAAAAAAGCTCACCTG
66 AATAGTGTAAAAAATGCTTCAAGCAGGATGCACTGTCAACAAAAGTAATGAAAAAAGCTCACCTG
** * *
86478337 GATGCTATTTTTCTACAGGAGTTTCTGAAACAATAATTTTGAGAAGATGGTT-TTGAAAAAATAG
131 GACACTATTTTTATACAGGAGTTTCTGAAAAAATAATTTTGAGAAGATGGTTCTT-AAAAAATAG
* *
86478401 GGTAAAAAACACTTCAAGCAGGATGCACTTTCAGCAAAAGTACT-GAAAAAGCTCC
195 GGTAAAAAACACTTCAAGCAGGATGCACTGTCAGCAAAAGTACTAAAAAAAGCTCC
* * *
86478456 CA-CATGGACACTATTTTTCTACAGGAGTTTCTGAAAAAATAATTTTGAAAAGATGATTCTGAAA
1 AAGC-TGGACACTATTTTTCTACAGTAGTTTCTGAAAAAATAATTTTGAAAAGATGGTTCTGAAA
* * * * *
86478520 AAATAATGTCAAAAATGCTCCAAGCAGGATGCACTGTCAGCAAAAGTACTGAAAAAAGCTCCCAC
65 AAATAGTGTAAAAAATGCTTCAAGCAGGATGCACTGTCAACAAAAGTAATGAAAAAAGCT--CAC
* *
86478585 CTGGACACTCTTTTTATACAGTAGTTTCTGAAAAAATAATTTTGAGAAGATGGTTCTTAAAAAAT
128 CTGGACACTATTTTTATACAGGAGTTTCTGAAAAAATAATTTTGAGAAGATGGTTCTTAAAAAAT
* * ** *
86478650 AGTGTCAAAAATGCTTCAAGCAGGATGCACTGTCAGCAAAAGTACTAAAAAAAGCTTC
193 AGGGTAAAAAACACTTCAAGCAGGATGCACTGTCAGCAAAAGTACTAAAAAAAGCTCC
* *
86478708 AAGCTGGACGCTATTTTTCTACAGTAGTTTCTG-AAAAATAATTTTGAAATGATGGTTCTGAAAA
1 AAGCTGGACACTATTTTTCTACAGTAGTTTCTGAAAAAATAATTTTGAAAAGATGGTTCTGAAAA
86478772 AATAGTGTAAAAAATGCTTCAAGCAGGATGCACTGT-AACAA
66 AATAGTGTAAAAAATGCTTCAAGCAGGATGCACTGTCAACAA
86478813 CCCGTTTTTA
Statistics
Matches: 308, Mismatches: 41, Indels: 13
0.85 0.11 0.04
Matches are distributed among these distances:
246 1 0.00
247 20 0.06
248 36 0.12
249 45 0.15
250 4 0.01
251 162 0.53
252 39 0.13
253 1 0.00
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Consensus pattern (250 bp):
AAGCTGGACACTATTTTTCTACAGTAGTTTCTGAAAAAATAATTTTGAAAAGATGGTTCTGAAAA
AATAGTGTAAAAAATGCTTCAAGCAGGATGCACTGTCAACAAAAGTAATGAAAAAAGCTCACCTG
GACACTATTTTTATACAGGAGTTTCTGAAAAAATAATTTTGAGAAGATGGTTCTTAAAAAATAGG
GTAAAAAACACTTCAAGCAGGATGCACTGTCAGCAAAAGTACTAAAAAAAGCTCC
Found at i:86479426 original size:21 final size:20
Alignment explanation
Indices: 86479402--86479441 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
86479392 TATGAGCTTT
86479402 AATGATTGATGATAGATTATG
1 AATGATTGATGATAG-TTATG
*
86479423 AATGTTTGATGATAGTTAT
1 AATGATTGATGATAGTTAT
86479442 ACAAGTTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.35, C:0.00, G:0.23, T:0.42
Consensus pattern (20 bp):
AATGATTGATGATAGTTATG
Found at i:86479449 original size:20 final size:21
Alignment explanation
Indices: 86479407--86479449 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
86479397 GCTTTAATGA
*
86479407 TTGATGATAGATTATGAATGT
1 TTGATGATAGATTATGAAAGT
86479428 TTGATGATAG-TTAT-ACAAGT
1 TTGATGATAGATTATGA-AAGT
86479448 TT
1 TT
86479450 TGTTAAGTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 1 0.05
20 9 0.45
21 10 0.50
ACGTcount: A:0.33, C:0.02, G:0.21, T:0.44
Consensus pattern (21 bp):
TTGATGATAGATTATGAAAGT
Found at i:86480637 original size:13 final size:13
Alignment explanation
Indices: 86480619--86480644 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
86480609 AATATAAGAA
86480619 ATTATTATTATAT
1 ATTATTATTATAT
86480632 ATTATTATTATAT
1 ATTATTATTATAT
86480645 TATATATATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (13 bp):
ATTATTATTATAT
Found at i:86480656 original size:13 final size:12
Alignment explanation
Indices: 86480619--86480655 Score: 51
Period size: 11 Copynumber: 3.2 Consensus size: 12
86480609 AATATAAGAA
86480619 ATTATTATTATAT
1 ATTATTA-TATAT
86480632 ATTATTAT-TAT
1 ATTATTATATAT
86480643 ATTA-TATATAT
1 ATTATTATATAT
86480654 AT
1 AT
86480656 AAAGTAAATG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
10 3 0.13
11 12 0.52
12 1 0.04
13 7 0.30
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (12 bp):
ATTATTATATAT
Found at i:86481554 original size:18 final size:18
Alignment explanation
Indices: 86481518--86481557 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
86481508 TTAAATTGAA
*
86481518 TGAAAATGTATTAAGTTG
1 TGAAAATGTATGAAGTTG
* *
86481536 TGAAAATGTGTGAATTTG
1 TGAAAATGTATGAAGTTG
86481554 TGAA
1 TGAA
86481558 TTGAATATTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.38, C:0.00, G:0.25, T:0.38
Consensus pattern (18 bp):
TGAAAATGTATGAAGTTG
Found at i:86482152 original size:18 final size:19
Alignment explanation
Indices: 86482126--86482164 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
86482116 TTGAAATAGT
*
86482126 TTATTTATAAATTAAT-TG
1 TTATATATAAATTAATATG
*
86482144 TTATATATAATTTAATATG
1 TTATATATAAATTAATATG
86482163 TT
1 TT
86482165 TATTTGTTAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.56
Consensus pattern (19 bp):
TTATATATAAATTAATATG
Found at i:86485256 original size:48 final size:47
Alignment explanation
Indices: 86485032--86485303 Score: 189
Period size: 48 Copynumber: 5.7 Consensus size: 47
86485022 GAGTAAGTAT
* * *
86485032 GCCGATGCCATGTCCCAGGCATGGTCTTACACTAGCTATCATCAACGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTA-CGTC-TCGAG
* * ** * * *
86485081 GCCGATGTCTTGTCTTAGACATGGTCTTACACTAGCTCTCGCATATCTG-T
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCT-ACG--TCTC-GAG
* *
86485131 GCTGATGCCATGTCCCAGACATGGTCTTACACT-GAC-ACATCTCGTA-
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAG-CTACGTCTCG-AG
* * * *
86485177 GCTGATG-CATATCCTAGACAT-ATCTTACACTAGCTTACGTCTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGC-TACGTCTCGAG
* * *
86485223 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGC-ACTCGACTCAAC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTA--CGTCTCGAG
** * *
86485271 ATCGATGCCATATCCTAGACATGGTCTTACACT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT
86485304 GGCTCTTATA
Statistics
Matches: 175, Mismatches: 33, Indels: 31
0.73 0.14 0.13
Matches are distributed among these distances:
44 10 0.06
45 15 0.09
46 24 0.14
47 12 0.07
48 48 0.27
49 34 0.19
50 30 0.17
51 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTACGTCTCGAG
Found at i:86485326 original size:142 final size:142
Alignment explanation
Indices: 86485077--86485353 Score: 303
Period size: 142 Copynumber: 2.0 Consensus size: 142
86485067 CTATCATCAA
* * ** * * *
86485077 CGAGGCCGATGTCTTGTCTTAGACATGGTCTTACACTAGCTCTCGCATATCTGTGCTGATGCCAT
1 CGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACTCGCATAACTATGCTGATGCCAT
* * * * *
86485142 GTCCCAGACATGGTCTTACACTGACACATCTCGTAGCTGATGCATATCCTAGACATATCTTACAC
66 ATCCCAGACATGGTCTTACACTGACACATATCGTAGCCGATGCATATCCCAAACATATCTTACAC
86485207 TAGCTTACGTCT
131 TAGCTTACGTCT
86485219 CGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACTCG-ACTCAAC-AT-C-GATGCC
1 CGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACTCGCA-T-AACTATGCTGATGCC
* * * * * *
86485280 ATATCCTAGACATGGTCTTACACTGGCTCTTATAAT-GTGGCCGATGCATGTCCCAAACATGTCT
64 ATATCCCAGACATGGTCTTACACTGACAC--AT-ATCGTAGCCGATGCATATCCCAAACATATCT
*
86485344 TATACTAGCT
126 TACACTAGCT
86485354 CACACAATTA
Statistics
Matches: 111, Mismatches: 19, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
140 31 0.28
141 2 0.02
142 75 0.68
143 3 0.03
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (142 bp):
CGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACTCGCATAACTATGCTGATGCCAT
ATCCCAGACATGGTCTTACACTGACACATATCGTAGCCGATGCATATCCCAAACATATCTTACAC
TAGCTTACGTCT
Found at i:86487504 original size:129 final size:128
Alignment explanation
Indices: 86487276--86487559 Score: 410
Period size: 129 Copynumber: 2.2 Consensus size: 128
86487266 AGGGAGTTAC
* * * * *
86487276 ATGCACTGTCAGCAAAAGTACTG--AAAAAAGCTCCCACTTGAACGCTTTTTTTATACAGTAGTT
1 ATGCACTGTCAGCAAAAGTACTGAAAAAAAAACACCAACATGAACGCTATTTTTATACAGTAGTT
*
86487339 TATAAAAAAATAATTTTGAGAAGATGGTTTTGAAAAAAATAGTGTCAAAAATGCTTCAAGCAGG
66 TATAAAAAAATAATTTTGAGAAGATGGTTTT-AAAAAAATAGTGTCAAAAATGCTTCAAGAAGG
* * * *
86487403 ATGCACTGTCAGCAAAAGTACTGAAAAAAAAACACCAAGATGGACGCTATTTTTCTATAGTAGTT
1 ATGCACTGTCAGCAAAAGTACTGAAAAAAAAACACCAACATGAACGCTATTTTTATACAGTAGTT
* * *
86487468 TTTGAAAAAATAATTTTGAGAATATGGTTTTAAAAAAATAGTGTCAAAAATGCTTCAAGAAGG
66 TATAAAAAAATAATTTTGAGAAGATGGTTTTAAAAAAATAGTGTCAAAAATGCTTCAAGAAGG
* *
86487531 ATGCACTATCAGTAAAAGTACTGAAAAAA
1 ATGCACTGTCAGCAAAAGTACTGAAAAAA
86487560 TCCCATCTGG
Statistics
Matches: 140, Mismatches: 15, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
127 23 0.16
128 58 0.41
129 59 0.42
ACGTcount: A:0.43, C:0.12, G:0.17, T:0.28
Consensus pattern (128 bp):
ATGCACTGTCAGCAAAAGTACTGAAAAAAAAACACCAACATGAACGCTATTTTTATACAGTAGTT
TATAAAAAAATAATTTTGAGAAGATGGTTTTAAAAAAATAGTGTCAAAAATGCTTCAAGAAGG
Found at i:86487685 original size:25 final size:25
Alignment explanation
Indices: 86487656--86487727 Score: 92
Period size: 25 Copynumber: 2.9 Consensus size: 25
86487646 TTACAGCGAG
86487656 AGAAATT-AGAGAAGTTCAAAAGAAT
1 AGAAATTGA-AGAAGTTCAAAAGAAT
* *
86487681 AGAAATTGAAAAAGTTCAGAAGAAT
1 AGAAATTGAAGAAGTTCAAAAGAAT
* *
86487706 ATAAATTGAAGAAGTTGAAAAG
1 AGAAATTGAAGAAGTTCAAAAG
86487728 GTATAGGTTG
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
25 39 0.98
26 1 0.03
ACGTcount: A:0.56, C:0.03, G:0.21, T:0.21
Consensus pattern (25 bp):
AGAAATTGAAGAAGTTCAAAAGAAT
Found at i:86493098 original size:3 final size:3
Alignment explanation
Indices: 86493084--86493259 Score: 185
Period size: 3 Copynumber: 58.7 Consensus size: 3
86493074 AGTAAAAATG
* * * *
86493084 ATA ATA AAA ATA ATA GTA ATA ATA ATA ATA CT- ATA ATG ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * *
86493131 ACA ATA ATA ATA ATA GA-A ATC GTA ATG GTA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* *
86493176 ATA ATA ATA ATA ATA ATA ATA ATA AAA ATA ATA ATA ATA ATA GAAA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA
* * * *
86493222 ATA ATA GTA ATA GTA AAA ATA ATA ATA ATA GTA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
86493260 TATTGTTATA
Statistics
Matches: 139, Mismatches: 30, Indels: 8
0.79 0.17 0.05
Matches are distributed among these distances:
2 2 0.01
3 134 0.96
4 3 0.02
ACGTcount: A:0.62, C:0.02, G:0.06, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:86494811 original size:13 final size:13
Alignment explanation
Indices: 86494785--86494819 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
86494775 AATTTCTATA
86494785 TATTATTA-TTAT
1 TATTATTACTTAT
*
86494797 TATTGTTACTTAT
1 TATTATTACTTAT
86494810 TATTATTACT
1 TATTATTACT
86494820 GTTATGTACA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
12 7 0.35
13 13 0.65
ACGTcount: A:0.29, C:0.06, G:0.03, T:0.63
Consensus pattern (13 bp):
TATTATTACTTAT
Found at i:86494819 original size:162 final size:165
Alignment explanation
Indices: 86494571--86494906 Score: 572
Period size: 162 Copynumber: 2.1 Consensus size: 165
86494561 ATTTTTAAAT
* *
86494571 TATTTTATTTTAATATTATTATATTATGTTTAGTTTTTTTGAATTTCTATATTATTATTATTATT
1 TATTTTATTTTAATATCATTATATTATGTTTAGATTTTTTGAATTTCTATATTATTATTATTATT
86494636 ATTGTTACTTATTAATATTACTGTTATGTACATATTATTTATACTATACTTAATATTATTATTAT
66 ATTGTTACTTATTAATATTACTGTTATGTACATATTATTTATACTATACTTAATATTATTATTAT
* * * *
86494701 TA-TTATTATTATTATTA-TTATTATTATTAGTGTA
131 TACAT-TTACTATTATTATTTATAAATATTAGTGTA
86494735 TATTTTATTTTAATATCATTATATTATGTTTA-ATTTTTTGAATTTCTATA-TATTATTATTATT
1 TATTTTATTTTAATATCATTATATTATGTTTAGATTTTTTGAATTTCTATATTATTATTATTATT
*
86494798 ATTGTTACTTATTATTATTACTGTTATGTACATATTATTTATACTATACTTAATATTATTATTAT
66 ATTGTTACTTATTAATATTACTGTTATGTACATATTATTTATACTATACTTAATATTATTATTAT
86494863 TACATTTACTATTATTATTTATAAATATTAGTGTA
131 TACATTTACTATTATTATTTATAAATATTAGTGTA
86494898 TATTTTATT
1 TATTTTATT
86494907 ATATATGTTT
Statistics
Matches: 163, Mismatches: 7, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
162 90 0.55
163 42 0.26
164 31 0.19
ACGTcount: A:0.32, C:0.04, G:0.04, T:0.60
Consensus pattern (165 bp):
TATTTTATTTTAATATCATTATATTATGTTTAGATTTTTTGAATTTCTATATTATTATTATTATT
ATTGTTACTTATTAATATTACTGTTATGTACATATTATTTATACTATACTTAATATTATTATTAT
TACATTTACTATTATTATTTATAAATATTAGTGTA
Found at i:86494836 original size:3 final size:3
Alignment explanation
Indices: 86494620--86494817 Score: 110
Period size: 3 Copynumber: 64.7 Consensus size: 3
86494610 TGAATTTCTA
* * * * *
86494620 TAT TAT TAT TAT TAT TAT TGT TACT TAT TAA TAT TAC TGT TAT GTACA
1 TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT -TA-T
* *
86494668 TAT TAT T-T ATAC TA- TACT TAA TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT -TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
86494713 TAT TAT TAT TAT TAT TAGT GTA- TAT T-T TAT T-T TAA TAT CAT TA-
1 TAT TAT TAT TAT TAT TA-T -TAT TAT TAT TAT TAT TAT TAT TAT TAT
86494756 TAT TAT GT-T TAAT T-T T-T TGAAT T-T CTAT ATAT TAT TAT TAT TAT
1 TAT TAT -TAT T-AT TAT TAT T--AT TAT -TAT -TAT TAT TAT TAT TAT
*
86494800 TGT TACT TAT TAT TAT TA
1 TAT TA-T TAT TAT TAT TA
86494818 CTGTTATGTA
Statistics
Matches: 153, Mismatches: 20, Indels: 44
0.71 0.09 0.20
Matches are distributed among these distances:
2 17 0.11
3 112 0.73
4 20 0.13
5 4 0.03
ACGTcount: A:0.32, C:0.04, G:0.04, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:86495065 original size:3 final size:3
Alignment explanation
Indices: 86495054--86495096 Score: 59
Period size: 3 Copynumber: 13.7 Consensus size: 3
86495044 ATTATTGCTA
*
86495054 TAT TGT TAT TAT TAT TAT TAT TAT TAT TAT ATAT ATAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT -TAT TAT TA
86495097 ATAGGTACTT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
3 30 0.81
4 7 0.19
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:86507509 original size:72 final size:72
Alignment explanation
Indices: 86507423--86507793 Score: 458
Period size: 72 Copynumber: 5.1 Consensus size: 72
86507413 GTATTTTGAT
* *
86507423 ATTTTTATTTCTATTTTCAAAATTCAACTCATATTACGAGAAATGAGTTGAGCCTCAAGACACGT
1 ATTTTAATTTCTATTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGT
86507488 TGAGGTA
66 TGAGGTA
* ** *
86507495 ATTTTTATTTCTATTTTCAAAATTCAACTCATATTGTAAGAAATGAGTTGAGCCTCAAGATACGT
1 ATTTTAATTTCTATTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGT
86507560 TGAGGTA
66 TGAGGTA
* * * * * *
86507567 ATTTCAATTTCTGTTTTCAAAATTCAACTCAGATTGCAAGAAATGAGTTGAGCCTCAAGACATGC
1 ATTTTAATTTCTATTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGT
86507632 TGAGGT-
66 TGAGGTA
* * **
86507638 ATTTTCAATTTCTATTTTTCAAAAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCA
1 ATTTT-AATTTCTA-TTTTC------AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
* *
86507703 GGACACGCTGAGGTA
58 AGACACGTTGAGGTA
* * * *
86507718 ATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGTAATGAGTTGAACCTCAAGACACGT
1 ATTTTAATTTCTATTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGT
86507783 TGAGGT-
66 TGAGGTA
86507789 ATTTT
1 ATTTT
86507794 CTGTAATACC
Statistics
Matches: 257, Mismatches: 33, Indels: 19
0.83 0.11 0.06
Matches are distributed among these distances:
71 8 0.03
72 183 0.71
73 5 0.02
78 5 0.02
79 52 0.20
80 4 0.02
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35
Consensus pattern (72 bp):
ATTTTAATTTCTATTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGT
TGAGGTA
Found at i:86507741 original size:151 final size:144
Alignment explanation
Indices: 86507429--86507794 Score: 491
Period size: 151 Copynumber: 2.5 Consensus size: 144
86507419 TGATATTTTT
* *
86507429 ATTTCTATTTTCAAAATTCAACTCATATTACGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
* * * *
86507494 AATTTT-TATTTCTATTTTCAAAATTCAACTCATATTGTAAGAAATGAGTTGAGCCTCAAGATAC
66 -ATTTTCAATTTCTATTTTCAAAAATCAACTCATATTGCAAGAAATGAGTTGAGCCTCAAGACAC
*
86507558 GTTGAGGTAATTTCA
130 GCTGAGGTAATTTCA
* * * *
86507573 ATTTCTGTTTTCAAAATTCAACTCAGATTGCAAGAAATGAGTTGAGCCTCAAGACATGCTGAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
* * **
86507638 ATTTTCAATTTCTATTTTTCAAAAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCA
66 ATTTTCAATTTCTA-TTTTC------AAAAATCAACTCATATTGCAAGAAATGAGTTGAGCCTCA
*
86507703 GGACACGCTGAGGTAATTTCA
124 AGACACGCTGAGGTAATTTCA
* *
86507724 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGTAATGAGTTGAACCTCAAGACACGTTGAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
86507789 ATTTTC
66 ATTTTC
86507795 TGTAATACCC
Statistics
Matches: 192, Mismatches: 22, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
143 5 0.03
144 66 0.34
145 5 0.03
151 116 0.60
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Consensus pattern (144 bp):
ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
ATTTTCAATTTCTATTTTCAAAAATCAACTCATATTGCAAGAAATGAGTTGAGCCTCAAGACACG
CTGAGGTAATTTCA
Found at i:86510566 original size:46 final size:46
Alignment explanation
Indices: 86510499--86510714 Score: 315
Period size: 46 Copynumber: 4.7 Consensus size: 46
86510489 GGCAACCTGA
86510499 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
*
86510545 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
* *
86510591 GTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
*** * * *
86510637 GAACAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
* * * *
86510683 GAGTAAGACCATAGTTGAAAGACACTATGGCA
1 GTGTAAGACCATGGTTGAAAGATACCATGGCA
86510715 TCATGTCAAA
Statistics
Matches: 156, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 156 1.00
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.21
Consensus pattern (46 bp):
GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
Found at i:86510694 original size:138 final size:130
Alignment explanation
Indices: 86510449--86510714 Score: 379
Period size: 138 Copynumber: 2.0 Consensus size: 130
86510439 AGTGTGCTCT
*
86510449 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGTGTAAGACCATGGT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGTGCAAGACCATGGT
* * * * * *
86510514 TGAAAGATACCATGGCAACCTGATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
66 TGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGACCATAGTTGAAAGACACCATGGCAAC
*
86510579 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGAACAAG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG--A-G---TG--CAAG
*
86510644 ACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGACCATAGTTGAAAGACACT
58 ACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGACCATAGTTGAAAGACACC
86510709 ATGGCA
123 ATGGCA
86510715 TCATGTCAAA
Statistics
Matches: 119, Mismatches: 9, Indels: 8
0.88 0.07 0.06
Matches are distributed among these distances:
130 48 0.40
132 1 0.01
133 1 0.01
136 2 0.02
138 67 0.56
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.22
Consensus pattern (130 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGTGCAAGACCATGGT
TGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGACCATAGTTGAAAGACACCATGGCAAC
Found at i:86511446 original size:78 final size:75
Alignment explanation
Indices: 86511320--86511719 Score: 328
Period size: 73 Copynumber: 5.3 Consensus size: 75
86511310 GGGGTGTTAC
*
86511320 ATTTTCAATTTATGT-TTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTT
1 ATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--
86511381 CACATGCTGAGGA
64 CAC-TGCTGAGGA
* * * *
86511394 ATTTTCAATTTCTATCTTTCAAAAAAAATCAACTCATAATGCGAGAGATGAGTTGAGCCTCGGGG
1 ATTTTCAATTTCTGTCTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGG
86511459 CAC-GCTGA-GA
64 CACTGCTGAGGA
** * * **
86511469 TATTGGCAATTTTTGT-TTCTTAATTTATGTTTCAAAATTCAACTCATATTGCGAGAAATGAGTT
1 -ATTTTCAATTTCTGTCTT-TCAA---A------AAAA-TCAACTCATATTGCGAGAGGTGAGTT
* * *
86511533 AAGCCTCAAG-ACATGCTGAGGT
54 GAGCCTCAGGCAC-TGCTGAGGA
*
86511555 ATTTTCAATTTTTGTCTTTCAAAAAAATCAACTC--ATTGCGAGAGGTGAGTTGAGCCTCAGG-A
1 ATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGCA
86511617 CTCGCTGAGGTA
66 CT-GCTGAGG-A
* * *
86511629 A-TTTCAATTTCTGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCATCAGGGC
1 ATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-GGC
*
86511691 AC-GCTGAGGT
65 ACTGCTGAGGA
86511701 ATTTTCAATTTCTG-CTTTC
1 ATTTTCAATTTCTGTCTTTC
86511720 CAATTTCTGC
Statistics
Matches: 268, Mismatches: 29, Indels: 60
0.75 0.08 0.17
Matches are distributed among these distances:
71 12 0.04
72 6 0.02
73 90 0.34
74 16 0.06
75 19 0.07
76 21 0.08
78 40 0.15
80 2 0.01
82 1 0.00
83 2 0.01
84 5 0.02
85 51 0.19
86 3 0.01
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34
Consensus pattern (75 bp):
ATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGCA
CTGCTGAGGA
Found at i:86511725 original size:14 final size:15
Alignment explanation
Indices: 86511706--86511734 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
86511696 GAGGTATTTT
86511706 CAATTTCTG-CTTTC
1 CAATTTCTGCCTTTC
86511720 CAATTTCTGCCTTTC
1 CAATTTCTGCCTTTC
86511735 AAAAAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.14, C:0.31, G:0.07, T:0.48
Consensus pattern (15 bp):
CAATTTCTGCCTTTC
Found at i:86511848 original size:94 final size:92
Alignment explanation
Indices: 86511648--86511849 Score: 241
Period size: 94 Copynumber: 2.2 Consensus size: 92
86511638 TCTGTTTTTC
** *
86511648 AAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCATCAGGGCACGCTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCATCAGGGCACGCTGAGGTATTTTCAAAGTA
*
86511713 TGCTTTCCAATTTCTGCCTTTCAAAAA
66 TGCTTTCCAATTTATGCCTTTCAAAAA
* *
86511740 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGGTCACATG-TCGAGGTATTTTCAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCATCAGGG-CAC--GCT-GAGGTATTTTCAA
* **
86511803 AGTATGCTTTTTCAATTTAT-TTTTGTC-AAAA
62 AGTATGC-TTTCCAATTTATGCCTT-TCAAAAA
86511834 AAAAATCAACTCATAT
1 AAAAATCAACTCATAT
86511850 CGTGAAAGGA
Statistics
Matches: 95, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
91 3 0.03
92 39 0.41
93 1 0.01
94 40 0.42
95 12 0.13
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Consensus pattern (92 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCATCAGGGCACGCTGAGGTATTTTCAAAGTA
TGCTTTCCAATTTATGCCTTTCAAAAA
Found at i:86513888 original size:3 final size:3
Alignment explanation
Indices: 86513597--86513869 Score: 140
Period size: 3 Copynumber: 89.3 Consensus size: 3
86513587 TGAATTTCTA
* * * * *
86513597 TAT TAT TAT TAT TAT TAT TGT TACT TAT TAA TAT TAC TGT TAT GTACA
1 TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT -TA-T
* *
86513645 TAT TAT T-T ATAC TA- TACT TAA TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT -TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
86513690 TAT TAT TAT TAT TAT TAT TAT TAT TAT TATT TAT AAA TAT TAGT GTA-
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TA-T -TAT
* *
86513737 TAT T-T TAT T-T TAA TAT CAT TA- TAT TAT GT-T TACT T-T T-T TGAAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TA-T TAT TAT T--AT
* * *
86513780 T-T CTA- TAT CAT TAT TAT TAT TAT TGT TACT TAT TAT TAT TAC TAT
1 TAT -TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT
* * *
86513825 TAT GTACA TAT TAT T-T ATAC TA- TACT TAA TAT TAT TAT TAT TAT T
1 TAT -TA-T TAT TAT TAT -TAT TAT TA-T TAT TAT TAT TAT TAT TAT T
86513870 TACATTTACT
Statistics
Matches: 208, Mismatches: 32, Indels: 60
0.69 0.11 0.20
Matches are distributed among these distances:
2 22 0.11
3 157 0.75
4 25 0.12
5 4 0.02
ACGTcount: A:0.33, C:0.05, G:0.03, T:0.59
Consensus pattern (3 bp):
TAT
Found at i:86514522 original size:2 final size:2
Alignment explanation
Indices: 86514515--86514539 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
86514505 TATTACTATT
86514515 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
86514540 TACGTACATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:86515387 original size:3 final size:3
Alignment explanation
Indices: 86515379--86515424 Score: 58
Period size: 3 Copynumber: 15.3 Consensus size: 3
86515369 AAGAAAAATA
**
86515379 AAT AAT AAT AAT AAT AAT AAT AAT AATT AAT TTT AAT AAT AA- AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT AAT
86515424 A
1 A
86515425 GCAAAAAATA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
2 2 0.05
3 32 0.86
4 3 0.08
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (3 bp):
AAT
Found at i:86518009 original size:34 final size:34
Alignment explanation
Indices: 86517966--86518035 Score: 122
Period size: 34 Copynumber: 2.1 Consensus size: 34
86517956 CTTAAACAAC
* *
86517966 TAGTCCACTAAGAAAACTCTGCATTGCAATTAGT
1 TAGTCCACTAAGAAAACCCTGCATAGCAATTAGT
86518000 TAGTCCACTAAGAAAACCCTGCATAGCAATTAGT
1 TAGTCCACTAAGAAAACCCTGCATAGCAATTAGT
86518034 TA
1 TA
86518036 ATCACACCTC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.37, C:0.21, G:0.14, T:0.27
Consensus pattern (34 bp):
TAGTCCACTAAGAAAACCCTGCATAGCAATTAGT
Found at i:86522401 original size:11 final size:11
Alignment explanation
Indices: 86522385--86522409 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
86522375 TATTGGCTTG
86522385 ATGCGTACAAC
1 ATGCGTACAAC
86522396 ATGCGTACAAC
1 ATGCGTACAAC
86522407 ATG
1 ATG
86522410 TAAATCAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.36, C:0.24, G:0.20, T:0.20
Consensus pattern (11 bp):
ATGCGTACAAC
Found at i:86534960 original size:2 final size:2
Alignment explanation
Indices: 86534953--86534985 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
86534943 ATGATGTGAT
86534953 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
86534986 CTTGGCATCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:86535303 original size:20 final size:19
Alignment explanation
Indices: 86535273--86535316 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 19
86535263 TGGCATTACC
* *
86535273 ATTTTTTTTAATAAATTTT
1 ATTTTTTTTAAAAAATATT
86535292 ATTTTTTATTAAAAAATATT
1 ATTTTTT-TTAAAAAATATT
86535312 ATTTT
1 ATTTT
86535317 ATTAGTGGTG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 7 0.32
20 15 0.68
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (19 bp):
ATTTTTTTTAAAAAATATT
Found at i:86535567 original size:4 final size:4
Alignment explanation
Indices: 86535558--86535603 Score: 67
Period size: 4 Copynumber: 11.2 Consensus size: 4
86535548 AGAGAGGGAG
86535558 AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGGA GAAGA AA-A AAGA A
1 AAGA AAGA AAGA AAGA AAGA AAGA AAGA AA-GA -AAGA AAGA AAGA A
86535604 TGACAAGGTG
Statistics
Matches: 39, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
3 3 0.08
4 30 0.77
5 4 0.10
6 2 0.05
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (4 bp):
AAGA
Found at i:86535753 original size:25 final size:26
Alignment explanation
Indices: 86535715--86535763 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
86535705 GTTTTTAATT
*
86535715 TATTTTAAAGTTA-TTGTGTTAGTTAC
1 TATTATAAAGTTATTTGT-TTAGTTAC
86535741 TATTATAAA-TTATTTGTTTAGTT
1 TATTATAAAGTTATTTGTTTAGTT
86535764 TAATGTTTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 9 0.43
26 12 0.57
ACGTcount: A:0.29, C:0.02, G:0.12, T:0.57
Consensus pattern (26 bp):
TATTATAAAGTTATTTGTTTAGTTAC
Found at i:86543100 original size:33 final size:33
Alignment explanation
Indices: 86543051--86543122 Score: 99
Period size: 33 Copynumber: 2.2 Consensus size: 33
86543041 GAAGAAGTAA
* * * *
86543051 AGTACTGCGGTAGATACGGGCTGGGAGGAGTGG
1 AGTACTGAGGTAGATACGAGCCGGGAAGAGTGG
*
86543084 AGTACTGAGGTGGATACGAGCCGGGAAGAGTGG
1 AGTACTGAGGTAGATACGAGCCGGGAAGAGTGG
86543117 AGTACT
1 AGTACT
86543123 ATGATGGTAG
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.25, C:0.12, G:0.44, T:0.18
Consensus pattern (33 bp):
AGTACTGAGGTAGATACGAGCCGGGAAGAGTGG
Found at i:86545248 original size:110 final size:110
Alignment explanation
Indices: 86545050--86545522 Score: 599
Period size: 110 Copynumber: 4.4 Consensus size: 110
86545040 AATCATAAAT
* * * * *
86545050 AAAATTTACATTT-TAACAAATCACAATACACATTAAACT-AA-ACAAATAATTGATAACCTAAT
1 AAAATTTACATTTATAACAAGTCACAATAAACACTAAACTAAACACAAACAATTTATAACCTAAT
*
86545112 CATAAATTACTAACAAAATGACTTTAAAATAATTTAAAAAACACAA
66 CATAAATTACTAACAAAATAACTTTAAAATAATTTAAAAAACA-AA
* **
86545158 CAAA-TTACATTTATAACAAGTCACAATAAACACTAAACTAAACACAAACAATTTATAATGTAAT
1 AAAATTTACATTTATAACAAGTCACAATAAACACTAAACTAAACACAAACAATTTATAACCTAAT
*
86545222 CATAAATTACT-A-AAAA-AA---T--AAT--TTT-AAAAACACA
66 CATAAATTACTAACAAAATAACTTTAAAATAATTTAAAAAACAAA
* * * * *
86545256 AAAATTTACATTTATAGCAAGTCACAACAAACACTAAACTAAACACAAAAAAATTATAATCTAAT
1 AAAATTTACATTTATAACAAGTCACAATAAACACTAAACTAAACACAAACAATTTATAACCTAAT
86545321 CATAAATTACTAACAAAATAACTTTAAAATAATTTTAAAAAACAAA
66 CATAAATTACTAACAAAATAACTTTAAAATAA-TTTAAAAAACAAA
*
86545367 AAAA-TTACATTCATAA-AAGATCACAATAAACACTAAACTAAACACAAACAATTTATAACCTAA
1 AAAATTTACATTTATAACAAG-TCACAATAAACACTAAACTAAACACAAACAATTTATAACCTAA
*
86545430 TCATAAATTACTAACAAAATAACTTTAAAATAA-TTAGAAAAATAAA
65 TCATAAATTACTAACAAAATAACTTTAAAATAATTTA-AAAAACAAA
* *
86545476 AAAATTTACATTCATAACAAATCAC-A-AAACACTAAACTAAACACAAA
1 AAAATTTACATTTATAACAAGTCACAATAAACACTAAACTAAACACAAA
86545523 AAAAAAACAA
Statistics
Matches: 320, Mismatches: 25, Indels: 40
0.83 0.06 0.10
Matches are distributed among these distances:
98 4 0.01
99 73 0.23
100 4 0.01
101 4 0.01
102 5 0.02
104 1 0.00
105 1 0.00
107 12 0.04
108 54 0.17
109 19 0.06
110 129 0.40
111 14 0.04
ACGTcount: A:0.57, C:0.15, G:0.02, T:0.26
Consensus pattern (110 bp):
AAAATTTACATTTATAACAAGTCACAATAAACACTAAACTAAACACAAACAATTTATAACCTAAT
CATAAATTACTAACAAAATAACTTTAAAATAATTTAAAAAACAAA
Found at i:86545256 original size:99 final size:98
Alignment explanation
Indices: 86545137--86545459 Score: 405
Period size: 99 Copynumber: 3.2 Consensus size: 98
86545127 AAATGACTTT
*
86545137 AAAATAATTTAAAAAACACAACAAATTACATTTATAACAAGTCACAATAAACACTAAACTAAACA
1 AAAATAATTTTAAAAACACAA-AAATTACATTTATAACAAGTCACAATAAACACTAAACTAAACA
*
86545202 CAAACAATTTATAATGTAATCATAAATTACTAAA
65 CAAACAATTTATAATCTAATCATAAATTACTAAA
* *
86545236 AAAATAATTTTAAAAACACAAAAATTTACATTTATAGCAAGTCACAACAAACACTAAACTAAACA
1 AAAATAATTTTAAAAACACAAAAA-TTACATTTATAACAAGTCACAATAAACACTAAACTAAACA
* *
86545301 CAAAAAAATTATAATCTAATCATAAATTACTAACAAAATAA
65 CAAACAATTTATAATCTAATCATAAATTACT------A-AA
* *
86545342 CTTTAAAATAATTTTAAAAAACAAAAAAATTACATTCATAA-AAGATCACAATAAACACTAAACT
1 ----AAAATAATTTT-AAAAACACAAAAATTACATTTATAACAAG-TCACAATAAACACTAAACT
* *
86545406 AAACACAAACAATTTATAACCTAATCATAAATTACTAAC
60 AAACACAAACAATTTATAATCTAATCATAAATTACTAAA
*
86545445 AAAATAACTTTAAAA
1 AAAATAATTTTAAAA
86545460 TAATTAGAAA
Statistics
Matches: 195, Mismatches: 15, Indels: 29
0.82 0.06 0.12
Matches are distributed among these distances:
98 7 0.04
99 96 0.49
103 1 0.01
104 1 0.01
105 1 0.01
106 2 0.01
109 3 0.02
110 72 0.37
111 12 0.06
ACGTcount: A:0.58, C:0.15, G:0.02, T:0.25
Consensus pattern (98 bp):
AAAATAATTTTAAAAACACAAAAATTACATTTATAACAAGTCACAATAAACACTAAACTAAACAC
AAACAATTTATAATCTAATCATAAATTACTAAA
Found at i:86546675 original size:28 final size:28
Alignment explanation
Indices: 86546643--86546736 Score: 84
Period size: 28 Copynumber: 3.2 Consensus size: 28
86546633 AACTGGACCT
*
86546643 TAGCCCATATCAGTATTAATCTGGGCCA
1 TAGCCCATATCAGTATCAATCTGGGCCA
*
86546671 TAGCCCCT-TACAGTATCAGAGTATACTGGGCC-
1 TAGCCCATAT-CAGTATC--A--AT-CTGGGCCA
* *
86546703 CAGCCCATATCAGTATCAATCTTGGCCA
1 TAGCCCATATCAGTATCAATCTGGGCCA
86546731 TAGCCC
1 TAGCCC
86546737 TATTACAAGT
Statistics
Matches: 52, Mismatches: 6, Indels: 16
0.70 0.08 0.22
Matches are distributed among these distances:
27 7 0.13
28 20 0.38
30 2 0.04
32 15 0.29
33 8 0.15
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.26
Consensus pattern (28 bp):
TAGCCCATATCAGTATCAATCTGGGCCA
Found at i:86546761 original size:60 final size:59
Alignment explanation
Indices: 86546601--86546774 Score: 158
Period size: 60 Copynumber: 2.9 Consensus size: 59
86546591 TCAAGCTTTA
* * * *
86546601 CTGGGCCTTAGCCCTATT-CAGAAATCAGAGT-TAACTGGACCTTAGCCCATATCAGTATTAAT
1 CTGGGCCATAGCCC-ATTACAG--ATCAGAGTAT-ACTGGGCC-CAGCCCATATCAGTATCAAT
*
86546663 CTGGGCCATAGCCCCTTACAGTATCAGAGTATACTGGGCCCAGCCCATATCAGTATCAAT
1 CTGGGCCATAGCCCATTACAG-ATCAGAGTATACTGGGCCCAGCCCATATCAGTATCAAT
* * **
86546723 CTTGGCCATAGCCCTATTACA-AGTC-GAGATATATTGGGCCTTGCCCATATCA
1 CTGGGCCATAGCCC-ATTACAGA-TCAGAG-TATACTGGGCCCAGCCCATATCA
86546775 ACACAGTTGG
Statistics
Matches: 96, Mismatches: 11, Indels: 12
0.81 0.09 0.10
Matches are distributed among these distances:
59 4 0.04
60 53 0.55
61 22 0.23
62 17 0.18
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (59 bp):
CTGGGCCATAGCCCATTACAGATCAGAGTATACTGGGCCCAGCCCATATCAGTATCAAT
Found at i:86546808 original size:19 final size:20
Alignment explanation
Indices: 86546765--86546810 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
86546755 ATTGGGCCTT
86546765 GCCCATATCAACACAGTTGG
1 GCCCATATCAACACAGTTGG
* *
86546785 GCCCATTTCAATACAGTT-G
1 GCCCATATCAACACAGTTGG
86546804 GCCCATA
1 GCCCATA
86546811 ATAAAACAGT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.24
Consensus pattern (20 bp):
GCCCATATCAACACAGTTGG
Found at i:86550347 original size:40 final size:40
Alignment explanation
Indices: 86550302--86550469 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
86550292 CGGAATATAA
86550302 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
86550342 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
86550382 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
86550422 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
86550462 CCGGATAT
1 CCGGATAT
86550470 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:86553994 original size:60 final size:60
Alignment explanation
Indices: 86553924--86554038 Score: 146
Period size: 60 Copynumber: 1.9 Consensus size: 60
86553914 TATTAATATT
*
86553924 AATCTGGGCCATAGCCC-CTTAC-AGTATC-AGAGTATACTGGGCCTAGCCCATATCAGTGTC
1 AATCTGGGCCATAGCCCTATTACAAG--TCGAGA-TATACTGGGCCTAGCCCATATCAGTGTC
* * *
86553984 AATCTTGGCCATAGCCCTATTACAAGTCGAGATATATTGGGCCTTGCCCATATCA
1 AATCTGGGCCATAGCCCTATTACAAGTCGAGATATACTGGGCCTAGCCCATATCA
86554039 ACACAGTTGG
Statistics
Matches: 48, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
60 39 0.81
61 7 0.15
62 2 0.04
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (60 bp):
AATCTGGGCCATAGCCCTATTACAAGTCGAGATATACTGGGCCTAGCCCATATCAGTGTC
Found at i:86554072 original size:19 final size:20
Alignment explanation
Indices: 86554029--86554074 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
86554019 ATTGGGCCTT
86554029 GCCCATATCAACACAGTTGG
1 GCCCATATCAACACAGTTGG
* *
86554049 GCCCATTTCAATACAGTT-G
1 GCCCATATCAACACAGTTGG
86554068 GCCCATA
1 GCCCATA
86554075 ACAAAACAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.24
Consensus pattern (20 bp):
GCCCATATCAACACAGTTGG
Found at i:86561235 original size:23 final size:22
Alignment explanation
Indices: 86561198--86561240 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
86561188 TAGGGTTTAG
86561198 AGGAAATTTCAATTTAGGGGAGA
1 AGGAAATTTCAATTT-GGGGAGA
**
86561221 AGGAAATTTTGATTTGGGGA
1 AGGAAATTTCAATTTGGGGA
86561241 AATTTAAGGG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 5 0.28
23 13 0.72
ACGTcount: A:0.35, C:0.02, G:0.33, T:0.30
Consensus pattern (22 bp):
AGGAAATTTCAATTTGGGGAGA
Found at i:86561439 original size:39 final size:41
Alignment explanation
Indices: 86561358--86561468 Score: 129
Period size: 40 Copynumber: 2.8 Consensus size: 41
86561348 CAATTAAACA
* * *
86561358 TTTAGTGGCG-TTTTACAAAAGCGTCGCTAAATCTAAATTT
1 TTTAGCGGCGTTTTTACAAAAGCGCCGCTAATTCTAAATTT
* **
86561398 TTTA-CGGCGTTTTTACAAAAGCGCCACTAATTCTCTA-TT
1 TTTAGCGGCGTTTTTACAAAAGCGCCGCTAATTCTAAATTT
* *
86561437 TTTAGCGGTGTTTTTACAAAAACGCCGCTAAT
1 TTTAGCGGCGTTTTTACAAAAGCGCCGCTAAT
86561469 GCCTCTGCAG
Statistics
Matches: 60, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
39 10 0.17
40 50 0.83
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.37
Consensus pattern (41 bp):
TTTAGCGGCGTTTTTACAAAAGCGCCGCTAATTCTAAATTT
Found at i:86562815 original size:28 final size:28
Alignment explanation
Indices: 86562784--86562842 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
86562774 AGTTTATAGA
* *
86562784 TTAGTGTTTATGGTTT-ATGTTTTAAAAT
1 TTAGGGTTTAGGGTTTAATG-TTTAAAAT
*
86562812 TTAGGGTTTAGGGTTTAATGTTTAAGAT
1 TTAGGGTTTAGGGTTTAATGTTTAAAAT
86562840 TTA
1 TTA
86562843 ATGGTTTACA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
28 24 0.89
29 3 0.11
ACGTcount: A:0.25, C:0.00, G:0.22, T:0.53
Consensus pattern (28 bp):
TTAGGGTTTAGGGTTTAATGTTTAAAAT
Found at i:86562828 original size:21 final size:21
Alignment explanation
Indices: 86562790--86562829 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
86562780 TAGATTAGTG
* * *
86562790 TTTATGGTTTATGTTTTAAAA
1 TTTAGGGTTTAGGGTTTAAAA
86562811 TTTAGGGTTTAGGGTTTAA
1 TTTAGGGTTTAGGGTTTAA
86562830 TGTTTAAGAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.25, C:0.00, G:0.23, T:0.53
Consensus pattern (21 bp):
TTTAGGGTTTAGGGTTTAAAA
Done.