Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 275 of 318
Found at i:87202352 original size:20 final size:19
Alignment explanation
Indices: 87202328--87202387 Score: 68
Period size: 20 Copynumber: 3.0 Consensus size: 19
87202318 TTGATAGCTT
87202328 TTAAAAATTATCGATACCTGA
1 TTAAAAA-TATCGATACCT-A
*
87202349 -TAAAAAGTATTGATACCTA
1 TTAAAAA-TATCGATACCTA
87202368 TTTAAAAATATCGATACCTA
1 -TTAAAAATATCGATACCTA
87202388 CCGGGTTTTA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
19 1 0.03
20 27 0.79
21 6 0.18
ACGTcount: A:0.45, C:0.13, G:0.08, T:0.33
Consensus pattern (19 bp):
TTAAAAATATCGATACCTA
Found at i:87205296 original size:26 final size:26
Alignment explanation
Indices: 87205263--87205372 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
87205253 TGATACAAAT
87205263 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
87205289 TGACAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
87205315 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
87205341 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
87205367 TGATAA
1 TGATAA
87205373 GAATTACATG
Statistics
Matches: 77, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.34, C:0.06, G:0.25, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:87211759 original size:26 final size:26
Alignment explanation
Indices: 87211730--87211782 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
87211720 AATAGGTAAG
87211730 TTGGTATGAATATATGTGATAATAGT
1 TTGGTATGAATATATGTGATAATAGT
87211756 TTGGTATGAATATATGTGATAATAGT
1 TTGGTATGAATATATGTGATAATAGT
87211782 T
1 T
87211783 AATACCTTGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.34, C:0.00, G:0.23, T:0.43
Consensus pattern (26 bp):
TTGGTATGAATATATGTGATAATAGT
Found at i:87212573 original size:26 final size:26
Alignment explanation
Indices: 87212534--87212583 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
87212524 TTGAGTTAAT
*
87212534 AAAATTCTCTTTGATTTTTCTTTTTA
1 AAAATTCTCTTTGACTTTTCTTTTTA
87212560 AAAATT-TCTCTTGACTTTTCTTTT
1 AAAATTCTCT-TTGACTTTTCTTTT
87212584 AGAAGAGTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 3 0.14
26 19 0.86
ACGTcount: A:0.22, C:0.14, G:0.04, T:0.60
Consensus pattern (26 bp):
AAAATTCTCTTTGACTTTTCTTTTTA
Found at i:87217480 original size:7 final size:7
Alignment explanation
Indices: 87217468--87217492 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
87217458 TTATGGGTAT
87217468 AATTTTA
1 AATTTTA
87217475 AATTTTA
1 AATTTTA
87217482 AATTTTA
1 AATTTTA
87217489 AATT
1 AATT
87217493 AATTTGTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (7 bp):
AATTTTA
Found at i:87225260 original size:12 final size:12
Alignment explanation
Indices: 87225227--87225265 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
87225217 TTATTACTTC
* *
87225227 ATGCATGCATGG
1 ATGCATGTATGT
*
87225239 ATGTATGTATGT
1 ATGCATGTATGT
87225251 ATGCATGTATGT
1 ATGCATGTATGT
87225263 ATG
1 ATG
87225266 TACAAATTAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.26, C:0.08, G:0.28, T:0.38
Consensus pattern (12 bp):
ATGCATGTATGT
Found at i:87231508 original size:42 final size:43
Alignment explanation
Indices: 87231449--87231532 Score: 116
Period size: 42 Copynumber: 2.0 Consensus size: 43
87231439 TTTTACAGTG
* * * *
87231449 TCACACGGCTTGGACACACGTCTATGTCCT-TGCCCGTGTGGC
1 TCACACGGCCTGGACACACGCCCATGTCCTCTACCCGTGTGGC
*
87231491 TCACATGGCCTGGACACACGCCCATGTCCTCTACCCGTGTGG
1 TCACACGGCCTGGACACACGCCCATGTCCTCTACCCGTGTGG
87231533 TTCCAAAACG
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
42 26 0.72
43 10 0.28
ACGTcount: A:0.15, C:0.36, G:0.25, T:0.24
Consensus pattern (43 bp):
TCACACGGCCTGGACACACGCCCATGTCCTCTACCCGTGTGGC
Found at i:87232982 original size:16 final size:16
Alignment explanation
Indices: 87232963--87233014 Score: 68
Period size: 16 Copynumber: 3.2 Consensus size: 16
87232953 TGGTTCACTG
*
87232963 TAATGGAATAGGGCTA
1 TAATGGAATAGAGCTA
* *
87232979 TAATTGAATAGAGCTG
1 TAATGGAATAGAGCTA
*
87232995 TAATGGAATAGAGCTG
1 TAATGGAATAGAGCTA
87233011 TAAT
1 TAAT
87233015 CAGTAATTCA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 32 1.00
ACGTcount: A:0.38, C:0.06, G:0.27, T:0.29
Consensus pattern (16 bp):
TAATGGAATAGAGCTA
Found at i:87233082 original size:44 final size:46
Alignment explanation
Indices: 87232996--87233083 Score: 128
Period size: 44 Copynumber: 2.0 Consensus size: 46
87232986 ATAGAGCTGT
*
87232996 AATGGAATAGAGCTGTAATCAGTAATTCAATTGTTTGGTTGAATGG
1 AATGGAAAAGAGCTGTAATCAGTAATTCAATTGTTTGGTTGAATGG
*
87233042 AATGGAAAAGAGCTGTAAT-AG-AATTC-TTGTGTTTGGTTGAAT
1 AATGGAAAAGAGCTGTAATCAGTAATTCAAT-TGTTTGGTTGAAT
87233084 ATAATAGATG
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
43 1 0.03
44 18 0.46
45 2 0.05
46 18 0.46
ACGTcount: A:0.33, C:0.06, G:0.26, T:0.35
Consensus pattern (46 bp):
AATGGAAAAGAGCTGTAATCAGTAATTCAATTGTTTGGTTGAATGG
Found at i:87233212 original size:26 final size:25
Alignment explanation
Indices: 87233170--87233220 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 25
87233160 ATAATTATTG
*
87233170 TTATTGTTATTAAATTTTAATAAAA
1 TTATTGTTAATAAATTTTAATAAAA
* *
87233195 TTATTGTTAAATATATTTTATTAAAA
1 TTATTGTT-AATAAATTTTAATAAAA
87233221 AAATAATAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 8 0.36
26 14 0.64
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.53
Consensus pattern (25 bp):
TTATTGTTAATAAATTTTAATAAAA
Found at i:87237528 original size:22 final size:22
Alignment explanation
Indices: 87237503--87237545 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
87237493 AGCTAAGATC
*
87237503 AGTAGAAGAGACAAACCTGAAT
1 AGTAAAAGAGACAAACCTGAAT
87237525 AGTAAAAGAGACAAACCTGAA
1 AGTAAAAGAGACAAACCTGAA
87237546 GAGAACACAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.53, C:0.14, G:0.21, T:0.12
Consensus pattern (22 bp):
AGTAAAAGAGACAAACCTGAAT
Found at i:87238052 original size:23 final size:23
Alignment explanation
Indices: 87238026--87238078 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 23
87238016 CAAATTTCCC
87238026 ATGTAAAGAAACATGACACAAAA
1 ATGTAAAGAAACATGACACAAAA
* *
87238049 ATGTTAAGAAGCATGACACAAAA
1 ATGTAAAGAAACATGACACAAAA
*
87238072 GTGTAAA
1 ATGTAAA
87238079 CCAAGTGCGA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.55, C:0.11, G:0.17, T:0.17
Consensus pattern (23 bp):
ATGTAAAGAAACATGACACAAAA
Found at i:87240508 original size:18 final size:18
Alignment explanation
Indices: 87240472--87240615 Score: 211
Period size: 18 Copynumber: 7.9 Consensus size: 18
87240462 AATCATATCT
*
87240472 TCTAAGATTGTATATCATA
1 TCTAAGATTGCA-ATCATA
87240491 TCTAAGATTGCAATCATA
1 TCTAAGATTGCAATCATA
*
87240509 TCTAAGATTG-TATCATA
1 TCTAAGATTGCAATCATA
87240526 TCTAAGATTGCAATCATA
1 TCTAAGATTGCAATCATA
*
87240544 TCTAAGATTG-TATCATA
1 TCTAAGATTGCAATCATA
87240561 TCTAAGATTGCAATCATA
1 TCTAAGATTGCAATCATA
*
87240579 TCTAAGATTGCATATCACA
1 TCTAAGATTGCA-ATCATA
87240598 TCTAAGATTGCATATCAT
1 TCTAAGATTGCA-ATCAT
87240616 TGAAGATTAT
Statistics
Matches: 115, Mismatches: 7, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
17 32 0.28
18 50 0.43
19 33 0.29
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (18 bp):
TCTAAGATTGCAATCATA
Found at i:87240530 original size:35 final size:36
Alignment explanation
Indices: 87240472--87240615 Score: 238
Period size: 35 Copynumber: 4.0 Consensus size: 36
87240462 AATCATATCT
87240472 TCTAAGATTGTATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTG-ATATCATATCTAAGATTGCAATCATA
87240509 TCTAAGATTG-TATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGATATCATATCTAAGATTGCAATCATA
87240544 TCTAAGATTG-TATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGATATCATATCTAAGATTGCAATCATA
*
87240579 TCTAAGATTGCATATCACATCTAAGATTGCATATCAT
1 TCTAAGATTG-ATATCATATCTAAGATTGCA-ATCAT
87240616 TGAAGATTAT
Statistics
Matches: 103, Mismatches: 1, Indels: 5
0.94 0.01 0.05
Matches are distributed among these distances:
35 70 0.68
37 28 0.27
38 5 0.05
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (36 bp):
TCTAAGATTGATATCATATCTAAGATTGCAATCATA
Found at i:87241368 original size:205 final size:205
Alignment explanation
Indices: 87240982--87241486 Score: 814
Period size: 205 Copynumber: 2.5 Consensus size: 205
87240972 AACTTTTTCA
* * * * * * * *
87240982 ATTTATTCCCTGACAATATAGAGA-TACCAAATCATCTTAAATTTGCTTTAACGTAAGCACGTGA
1 ATTTGTTCTCTGACAATACAGAGACGA-CAAATCATCTTAGATTTGCTTCATCGTAAACACGTGA
* *
87241046 AAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAATGATGCCAAACCATCTTGGAT
65 AAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTTGGAT
*
87241111 CTGCTTCAGCATAAACATCTGAAGGTGAGATCTGCTATGTATCTGTTCTCTATTGAAGTAGAGAT
130 CTGCTTCAGCATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCTCTATTGAAGTAGAGAT
87241176 GCTAGACTTCG
195 GCTAGACTTCG
* * *
87241187 ATTTGTTCTCTGACACTACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAATACGTGAC
1 ATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAA
*
87241252 AGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATACCAAACCATCTTGGATC
66 AGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTTGGATC
87241317 TGCTTCAGCATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCTCTATTGAAGTAGAGATG
131 TGCTTCAGCATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCTCTATTGAAGTAGAGATG
87241382 CTAGACTTCG
196 CTAGACTTCG
* * *
87241392 ATTTGTTCTCTGACAATATAGAGATGACAAATTATCTTAGATTTGCTTCATCGTAAACACGTGAA
1 ATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAA
* *
87241457 AGCCAAATCAGCTATGTCTTCAATCTGCTC
66 AGCCAAATCAGCTATGTCTTCGATTTGCTC
87241487 TCCGCCAATA
Statistics
Matches: 275, Mismatches: 24, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
205 274 1.00
206 1 0.00
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (205 bp):
ATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAA
AGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTTGGATC
TGCTTCAGCATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCTCTATTGAAGTAGAGATG
CTAGACTTCG
Found at i:87241527 original size:44 final size:44
Alignment explanation
Indices: 87241473--87241567 Score: 127
Period size: 44 Copynumber: 2.2 Consensus size: 44
87241463 ATCAGCTATG
*
87241473 TCTTCAATCTGCTCTCCGCCAATACAGAAATGCCAAATCTGGTA
1 TCTTCAATCTGCTCTCCGACAATACAGAAATGCCAAATCTGGTA
* * * * * *
87241517 TCTTCGATCTGCTCTCTGACAATACAGAGATGCCGAATCTGCTG
1 TCTTCAATCTGCTCTCCGACAATACAGAAATGCCAAATCTGGTA
87241561 TCTTCAA
1 TCTTCAA
87241568 CTTGTTCCCT
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.29
Consensus pattern (44 bp):
TCTTCAATCTGCTCTCCGACAATACAGAAATGCCAAATCTGGTA
Found at i:87241746 original size:132 final size:132
Alignment explanation
Indices: 87241509--87241952 Score: 746
Period size: 132 Copynumber: 3.4 Consensus size: 132
87241499 GAAATGCCAA
* * * * * * *
87241509 ATCTGGTATCTTCGATCTGCTCTCTGA-CAATACAGAGATGCCGAATCTGCTGTCTTCAACTTGT
1 ATCTGTTATCTTCGATCTGCTCCCT-ATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGT
* * * *
87241573 TCCCTATAAACACAGGGATACCATACTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAGTGT
65 TCCCTATAAACACAGGGATGCCATGCTGAAATCCTCGATCTGCTTCGCTGTAAGCACAGGAGTGT
87241638 CAG
130 CAG
*
87241641 ATCTGTTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTT
1 ATCTGTTATCTTCGATCTGCTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTT
87241706 CCCTATAAACACAGGGATGCCATGCTGAAATCCTCGATCTGCTTCGCTGTAAGCACAGGAGTGTC
66 CCCTATAAACACAGGGATGCCATGCTGAAATCCTCGATCTGCTTCGCTGTAAGCACAGGAGTGTC
87241771 AG
131 AG
*
87241773 ATCTGTTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTT
1 ATCTGTTATCTTCGATCTGCTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTT
87241838 CCCTATAAACACAGGGATGCCATGCTGAAATCCTCGATCTGCTTCGCTGTAAGCACAGGAGTGTC
66 CCCTATAAACACAGGGATGCCATGCTGAAATCCTCGATCTGCTTCGCTGTAAGCACAGGAGTGTC
87241903 AG
131 AG
*
87241905 ATCTGTTATCTTTGATCTGCTCCCTATAAACACAGGGATGCCAAATCT
1 ATCTGTTATCTTCGATCTGCTCCCTATAAACACAGGGATGCCAAATCT
87241953 TGTTTCTTTG
Statistics
Matches: 297, Mismatches: 14, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
131 1 0.00
132 296 1.00
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.30
Consensus pattern (132 bp):
ATCTGTTATCTTCGATCTGCTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTT
CCCTATAAACACAGGGATGCCATGCTGAAATCCTCGATCTGCTTCGCTGTAAGCACAGGAGTGTC
AG
Found at i:87241966 original size:44 final size:44
Alignment explanation
Indices: 87241502--87241952 Score: 341
Period size: 44 Copynumber: 10.2 Consensus size: 44
87241492 CAATACAGAA
* * * * * *
87241502 ATGCCAAATCTGGTATCTTCGATCTGCTCTCTGA-CAATACAGAG
1 ATGCCAAATCTGATATCTTCGATCTGTTCCCT-ATAAACACAGGG
* * * *
87241546 ATGCCGAATCTGCTGTCTTC-AACTTGTTCCCTATAAACACAGGG
1 ATGCCAAATCTGATATCTTCGATC-TGTTCCCTATAAACACAGGG
* * * * * *
87241590 ATACCATA-CTGAAATCTTCGATCTGCTTCACTGTAAGCACA-GG
1 ATGCCAAATCTGATATCTTCGATCTG-TTCCCTATAAACACAGGG
* * *
87241633 AGTGTCAGATCTGTTATCTTCGATCTGTTCCCTATAAACACAGGG
1 A-TGCCAAATCTGATATCTTCGATCTGTTCCCTATAAACACAGGG
* *
87241678 ATGCCAAATCTGCTATCTTC-AACTTGTTCCCTATAAACACAGGG
1 ATGCCAAATCTGATATCTTCGATC-TGTTCCCTATAAACACAGGG
* * * * *
87241722 ATGCC--ATGCTGAAATCCTCGATCTGCTTCGCTGTAAGCACA-GG
1 ATGCCAAAT-CTGATATCTTCGATCTG-TTCCCTATAAACACAGGG
* * *
87241765 AGTGTCAGATCTGTTATCTTCGATCTGTTCCCTATAAACACAGGG
1 A-TGCCAAATCTGATATCTTCGATCTGTTCCCTATAAACACAGGG
* *
87241810 ATGCCAAATCTGCTATCTTC-AACTTGTTCCCTATAAACACAGGG
1 ATGCCAAATCTGATATCTTCGATC-TGTTCCCTATAAACACAGGG
* * * * *
87241854 ATGCC--ATGCTGAAATCCTCGATCTGCTTCGCTGTAAGCACA-GG
1 ATGCCAAAT-CTGATATCTTCGATCTG-TTCCCTATAAACACAGGG
* * * * *
87241897 AGTGTCAGATCTGTTATCTTTGATCTGCTCCCTATAAACACAGGG
1 A-TGCCAAATCTGATATCTTCGATCTGTTCCCTATAAACACAGGG
87241942 ATGCCAAATCT
1 ATGCCAAATCT
87241953 TGTTTCTTTG
Statistics
Matches: 317, Mismatches: 67, Indels: 46
0.74 0.16 0.11
Matches are distributed among these distances:
42 4 0.01
43 46 0.15
44 212 0.67
45 51 0.16
46 4 0.01
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.30
Consensus pattern (44 bp):
ATGCCAAATCTGATATCTTCGATCTGTTCCCTATAAACACAGGG
Found at i:87242853 original size:1 final size:1
Alignment explanation
Indices: 87242843--87242912 Score: 50
Period size: 1 Copynumber: 70.0 Consensus size: 1
87242833 GGCCTCTCTA
* * * * * * * * * *
87242843 TTTTTCTTTTTTCTCTTTTTTATTTTTATTTTTATTTTTTTATTTTTATTTTATTTTTTCTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
87242908 TTTTT
1 TTTTT
87242913 GAAATAGAAG
Statistics
Matches: 49, Mismatches: 20, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
1 49 1.00
ACGTcount: A:0.09, C:0.06, G:0.00, T:0.86
Consensus pattern (1 bp):
T
Found at i:87242868 original size:6 final size:6
Alignment explanation
Indices: 87242859--87242900 Score: 59
Period size: 6 Copynumber: 6.8 Consensus size: 6
87242849 TTTTTTCTCT
87242859 TTTTTA TTTTTA TTTTTA TTTTTTTA TTTTTA -TTTTA TTTTT
1 TTTTTA TTTTTA TTTTTA --TTTTTA TTTTTA TTTTTA TTTTT
87242901 TCTTTTTTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
5 5 0.15
6 22 0.67
8 6 0.18
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (6 bp):
TTTTTA
Found at i:87242868 original size:14 final size:12
Alignment explanation
Indices: 87242858--87242912 Score: 65
Period size: 12 Copynumber: 4.4 Consensus size: 12
87242848 CTTTTTTCTC
87242858 TTTTTTATTTTT
1 TTTTTTATTTTT
*
87242870 ATTTTTATTTTTT
1 TTTTTTA-TTTTT
*
87242883 TATTTTTATTTTA
1 T-TTTTTATTTTT
*
87242896 TTTTTTCTTTTT
1 TTTTTTATTTTT
87242908 TTTTT
1 TTTTT
87242913 GAAATAGAAG
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
12 20 0.56
13 10 0.28
14 6 0.17
ACGTcount: A:0.11, C:0.02, G:0.00, T:0.87
Consensus pattern (12 bp):
TTTTTTATTTTT
Found at i:87242909 original size:20 final size:20
Alignment explanation
Indices: 87242858--87242901 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
87242848 CTTTTTTCTC
87242858 TTTTTTATTTTTATTTTTAT
1 TTTTTTATTTTTATTTTTAT
87242878 TTTTTTATTTTTA-TTTTAT
1 TTTTTTATTTTTATTTTTAT
87242897 TTTTT
1 TTTTT
87242902 CTTTTTTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 11 0.46
20 13 0.54
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (20 bp):
TTTTTTATTTTTATTTTTAT
Found at i:87248732 original size:26 final size:26
Alignment explanation
Indices: 87248702--87248751 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
87248692 AGCATATAAA
* * *
87248702 AAAATATGATATTTAATAATAAATTT
1 AAAATATAATATATAATAAAAAATTT
87248728 AAAATATAATATATAATAAAAAAT
1 AAAATATAATATATAATAAAAAAT
87248752 ATATTTATAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (26 bp):
AAAATATAATATATAATAAAAAATTT
Found at i:87249534 original size:19 final size:19
Alignment explanation
Indices: 87249506--87249596 Score: 134
Period size: 19 Copynumber: 4.9 Consensus size: 19
87249496 AATTATATCT
* *
87249506 TCTAATATTGTATATCATA
1 TCTAAGATTGCATATCATA
87249525 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
87249543 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
*
87249560 TCTAAGATTGCATATCACA
1 TCTAAGATTGCATATCATA
87249579 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
87249597 TGAAGATTAT
Statistics
Matches: 65, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
17 16 0.25
18 16 0.25
19 33 0.51
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:87249564 original size:35 final size:36
Alignment explanation
Indices: 87249518--87249588 Score: 126
Period size: 35 Copynumber: 2.0 Consensus size: 36
87249508 TAATATTGTA
*
87249518 TATCATATCTAAGATTGCA-ATCATATCTAAGATTG
1 TATCATATCTAAGATTGCATATCACATCTAAGATTG
87249553 TATCATATCTAAGATTGCATATCACATCTAAGATTG
1 TATCATATCTAAGATTGCATATCACATCTAAGATTG
87249589 CATATCATTG
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
35 19 0.56
36 15 0.44
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (36 bp):
TATCATATCTAAGATTGCATATCACATCTAAGATTG
Found at i:87249575 original size:14 final size:15
Alignment explanation
Indices: 87249520--87249575 Score: 60
Period size: 17 Copynumber: 3.5 Consensus size: 15
87249510 ATATTGTATA
87249520 TCATATCTAAGATTG
1 TCATATCTAAGATTG
87249535 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
87249553 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
87249570 -CATATC
1 TCATATC
87249576 ACATCTAAGA
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
14 6 0.16
17 16 0.43
18 15 0.41
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:87249603 original size:36 final size:35
Alignment explanation
Indices: 87249518--87249604 Score: 106
Period size: 36 Copynumber: 2.5 Consensus size: 35
87249508 TAATATTGTA
* *
87249518 TATCATATCTAAGATTGCAATCATATCTAAGATTG
1 TATCATATCGAAGATTGCAATCACATCTAAGATTG
*
87249553 TATCATATCTAAGATTGCATATCACATCTAAGATTG
1 TATCATATCGAAGATTGCA-ATCACATCTAAGATTG
87249589 CATATCAT-T-GAAGATT
1 --TATCATATCGAAGATT
87249605 ATATTTTCAT
Statistics
Matches: 47, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
35 19 0.40
36 21 0.45
37 1 0.02
38 6 0.13
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (35 bp):
TATCATATCGAAGATTGCAATCACATCTAAGATTG
Found at i:87249826 original size:21 final size:21
Alignment explanation
Indices: 87249800--87249840 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
87249790 TCATTTAAGC
*
87249800 ACAATTTGCTTTGCTGGTTTT
1 ACAATTTGCTTTGCTAGTTTT
87249821 ACAATTTGCTTTGCTAGTTT
1 ACAATTTGCTTTGCTAGTTT
87249841 ATATCCAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.17, C:0.15, G:0.17, T:0.51
Consensus pattern (21 bp):
ACAATTTGCTTTGCTAGTTTT
Found at i:87251688 original size:24 final size:22
Alignment explanation
Indices: 87251661--87251705 Score: 54
Period size: 24 Copynumber: 2.0 Consensus size: 22
87251651 ATGTAACATA
*
87251661 TATTTTTAAATGATTACTATATTT
1 TATTATTAAAT-ATTA-TATATTT
*
87251685 TATTATTAAGTATTATATATT
1 TATTATTAAATATTATATATT
87251706 ATCAAATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 6 0.32
23 4 0.21
24 9 0.47
ACGTcount: A:0.36, C:0.02, G:0.04, T:0.58
Consensus pattern (22 bp):
TATTATTAAATATTATATATTT
Found at i:87252895 original size:26 final size:25
Alignment explanation
Indices: 87252866--87253001 Score: 200
Period size: 26 Copynumber: 5.2 Consensus size: 25
87252856 TGATACAAAT
87252866 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAAT-GGTTAGGTAAATGTTTCA
87252892 TGATAATGTGTTAGGTAAATGTTTCA
1 TGATAATG-GTTAGGTAAATGTTTCA
*
87252918 TGATAATGGGTTAGGTAAATGTTTTA
1 TGATAAT-GGTTAGGTAAATGTTTCA
*
87252944 TGATAATGTATTAGGTAAATGTTTCA
1 TGATAATG-GTTAGGTAAATGTTTCA
87252970 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAAT-GGTTAGGTAAATGTTTCA
*
87252996 GGATAA
1 TGATAA
87253002 GAATTTCATG
Statistics
Matches: 101, Mismatches: 5, Indels: 8
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.02
26 97 0.96
27 2 0.02
ACGTcount: A:0.33, C:0.03, G:0.24, T:0.40
Consensus pattern (25 bp):
TGATAATGGTTAGGTAAATGTTTCA
Found at i:87252930 original size:52 final size:52
Alignment explanation
Indices: 87252866--87253001 Score: 236
Period size: 52 Copynumber: 2.6 Consensus size: 52
87252856 TGATACAAAT
* *
87252866 TGATAATAGGTTAGGTAAATGTTTCATGATAATGTGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCATGATAATGTATTAGGTAAATGTTTCA
*
87252918 TGATAATGGGTTAGGTAAATGTTTTATGATAATGTATTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCATGATAATGTATTAGGTAAATGTTTCA
*
87252970 TGATAATGGGTTAGGTAAATGTTTCAGGATAA
1 TGATAATGGGTTAGGTAAATGTTTCATGATAA
87253002 GAATTTCATG
Statistics
Matches: 79, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 79 1.00
ACGTcount: A:0.33, C:0.03, G:0.24, T:0.40
Consensus pattern (52 bp):
TGATAATGGGTTAGGTAAATGTTTCATGATAATGTATTAGGTAAATGTTTCA
Found at i:87255767 original size:64 final size:65
Alignment explanation
Indices: 87255666--87255791 Score: 236
Period size: 64 Copynumber: 2.0 Consensus size: 65
87255656 AATGGACCCA
87255666 CCCCCCTCCCCCCTCTCCAAACGCCAATTTTCTTTCGCATATACTTCTCATTTACCAATTTCCCC
1 CCCCCCTCCCCCCTCTCCAAACGCCAATTTTCTTTCGCATATACTTCTCATTTACCAATTTCCCC
*
87255731 CCCCCCT-CCCCCTCTCCAAACGCCAATTTTCTTTCGCATATGCTTCTCATTTACCAATTTC
1 CCCCCCTCCCCCCTCTCCAAACGCCAATTTTCTTTCGCATATACTTCTCATTTACCAATTTC
87255792 AAACTATCTT
Statistics
Matches: 60, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
64 53 0.88
65 7 0.12
ACGTcount: A:0.18, C:0.44, G:0.04, T:0.33
Consensus pattern (65 bp):
CCCCCCTCCCCCCTCTCCAAACGCCAATTTTCTTTCGCATATACTTCTCATTTACCAATTTCCCC
Found at i:87262153 original size:2 final size:2
Alignment explanation
Indices: 87262146--87262173 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
87262136 GACCGTGCAA
87262146 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
87262174 CATGTAACTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:87274332 original size:132 final size:132
Alignment explanation
Indices: 87274094--87274359 Score: 369
Period size: 132 Copynumber: 2.0 Consensus size: 132
87274084 AACCTATGAA
* ** * *
87274094 CTTACTAAACATTCAAAATGCTTCTTCTGTTTTGTTTTCTGTTTCTGTAGTGGTTTTTTTGCGAT
1 CTTACTAAACATTCAAAATGCTTCTTCTATTTCATTTTCTGTTTCTATAGTGGTTATTTTGCGAT
* * * *
87274159 CCATGTCGATTGGATCACCTTGGAGCTCAAACTACCTAGCTTCTGACTCGATAGACTTTTAAATG
66 ACACGTCAATTGGATCACCTTGGAGCTCAAACTACCTAGCTTCTGACTCGATAGACTTTTAAACG
87274224 TT
131 TT
*
87274226 CTTACTAAGCATTCAAAATGCTTAC-TCTATTTCATTTTCTGTTTCTATAGTGGTTATTTTGCGG
1 CTTACTAAACATTCAAAATGCTT-CTTCTATTTCATTTTCTGTTTCTATAGTGGTTATTTTGC-G
*
87274290 A-ACACGTCAATTGGATCA-CTTCGGAGCTCAAACTATCC-AGCTTCTGACTCGGTAGACTTTTA
64 ATACACGTCAATTGGATCACCTT-GGAGCTCAAACTA-CCTAGCTTCTGACTCGATAGACTTTTA
87274352 AACGTT
127 AACGTT
87274358 CT
1 CT
87274360 GGACTCAGTT
Statistics
Matches: 119, Mismatches: 11, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
131 3 0.03
132 111 0.93
133 5 0.04
ACGTcount: A:0.23, C:0.21, G:0.16, T:0.40
Consensus pattern (132 bp):
CTTACTAAACATTCAAAATGCTTCTTCTATTTCATTTTCTGTTTCTATAGTGGTTATTTTGCGAT
ACACGTCAATTGGATCACCTTGGAGCTCAAACTACCTAGCTTCTGACTCGATAGACTTTTAAACG
TT
Found at i:87276563 original size:19 final size:20
Alignment explanation
Indices: 87276539--87276585 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
87276529 TTAAGGTTAG
* *
87276539 TTAATTAAGCTTATTTA-AA
1 TTAATTAAGATTAATTAGAA
*
87276558 TTAATTAAGATTAATTAGAT
1 TTAATTAAGATTAATTAGAA
87276578 TTAATTAA
1 TTAATTAA
87276586 ATATTTAAGA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
19 15 0.62
20 9 0.38
ACGTcount: A:0.45, C:0.02, G:0.06, T:0.47
Consensus pattern (20 bp):
TTAATTAAGATTAATTAGAA
Found at i:87276570 original size:10 final size:10
Alignment explanation
Indices: 87276539--87276585 Score: 53
Period size: 10 Copynumber: 4.8 Consensus size: 10
87276529 TTAAGGTTAG
*
87276539 TTAATTAAGC
1 TTAATTAAGA
*
87276549 TTATTTAA-A
1 TTAATTAAGA
87276558 TTAATTAAGA
1 TTAATTAAGA
87276568 TTAATT-AGA
1 TTAATTAAGA
87276577 TTTAATTAA
1 -TTAATTAA
87276586 ATATTTAAGA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
9 10 0.32
10 20 0.65
11 1 0.03
ACGTcount: A:0.45, C:0.02, G:0.06, T:0.47
Consensus pattern (10 bp):
TTAATTAAGA
Found at i:87278137 original size:19 final size:18
Alignment explanation
Indices: 87278113--87278156 Score: 52
Period size: 19 Copynumber: 2.4 Consensus size: 18
87278103 AGCAACAGAC
* *
87278113 AAACAAACAATAAGCAAAA
1 AAACAAAAAAGAAGC-AAA
*
87278132 AAACAAAAAAGAAGCAGA
1 AAACAAAAAAGAAGCAAA
87278150 AAACAAA
1 AAACAAA
87278157 GAGCAAAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
18 9 0.41
19 13 0.59
ACGTcount: A:0.75, C:0.14, G:0.09, T:0.02
Consensus pattern (18 bp):
AAACAAAAAAGAAGCAAA
Found at i:87283621 original size:14 final size:14
Alignment explanation
Indices: 87283602--87283631 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
87283592 AAAGAAATTT
*
87283602 TTCTTCTAGTGAAA
1 TTCTTCTAATGAAA
87283616 TTCTTCTAATGAAA
1 TTCTTCTAATGAAA
87283630 TT
1 TT
87283632 GAATTAGAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.30, C:0.13, G:0.10, T:0.47
Consensus pattern (14 bp):
TTCTTCTAATGAAA
Found at i:87283682 original size:19 final size:19
Alignment explanation
Indices: 87283662--87283703 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
87283652 TTGTTTTGCA
*
87283662 TTCATTCATTTGCATTACAT
1 TTCA-TCATGTGCATTACAT
*
87283682 TTCATCATGTGCATTAAAT
1 TTCATCATGTGCATTACAT
87283701 TTC
1 TTC
87283704 GTGAAAAGAC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 16 0.80
20 4 0.20
ACGTcount: A:0.26, C:0.19, G:0.07, T:0.48
Consensus pattern (19 bp):
TTCATCATGTGCATTACAT
Found at i:87291718 original size:66 final size:66
Alignment explanation
Indices: 87291612--87291777 Score: 237
Period size: 66 Copynumber: 2.5 Consensus size: 66
87291602 CATTCATACA
* *
87291612 TCATTCATAACACATCTAATTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAGTTATTTGA
1 TCATTCATAACACATCTAATTAGGAGCATTTGATTCATTTCAATCATACCATCCTAATTATTTGA
*
87291677 T
66 C
* * * *
87291678 TCATTCATAACACGTTTAATTAAGAGCATTTGATTCATTTCGATCATACCATCCTAATTATTTGA
1 TCATTCATAACACATCTAATTAGGAGCATTTGATTCATTTCAATCATACCATCCTAATTATTTGA
87291743 C
66 C
* *
87291744 ACATTCAT--CACATCTAGTTAGGAGCATTTGATTC
1 TCATTCATAACACATCTAATTAGGAGCATTTGATTC
87291778 GACCATAGCA
Statistics
Matches: 88, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
64 22 0.25
66 66 0.75
ACGTcount: A:0.31, C:0.19, G:0.11, T:0.39
Consensus pattern (66 bp):
TCATTCATAACACATCTAATTAGGAGCATTTGATTCATTTCAATCATACCATCCTAATTATTTGA
C
Found at i:87292244 original size:44 final size:44
Alignment explanation
Indices: 87292093--87292244 Score: 141
Period size: 44 Copynumber: 3.5 Consensus size: 44
87292083 GATTTTGTCT
* * *
87292093 CCCTAAGCAGTAGTGG-AACAAATCAAAGATGATGGGCTTTAACC
1 CCCTAAGCAGTAG-GGTAACAGATCGAAGATGATGGGCCTTAACC
* * * * **
87292137 CCCTAAGCAGTAGGGTAACA-AGCCGCA-TTTATAGATCC-TAACC
1 CCCTAAGCAGTAGGGTAACAGA-TCGAAGATGAT-GGGCCTTAACC
* *
87292180 CCCTAAGTAGTAGGGAAACAGATCGAAGATGATGGGCCTTAACC
1 CCCTAAGCAGTAGGGTAACAGATCGAAGATGATGGGCCTTAACC
*
87292224 CCCTAAGCAGTAGGCTAACAG
1 CCCTAAGCAGTAGGGTAACAG
87292245 GATTGAAATC
Statistics
Matches: 83, Mismatches: 19, Indels: 12
0.73 0.17 0.11
Matches are distributed among these distances:
43 35 0.42
44 48 0.58
ACGTcount: A:0.34, C:0.24, G:0.23, T:0.19
Consensus pattern (44 bp):
CCCTAAGCAGTAGGGTAACAGATCGAAGATGATGGGCCTTAACC
Found at i:87296941 original size:26 final size:26
Alignment explanation
Indices: 87296901--87296956 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
87296891 ATATAATAAT
87296901 AATATAATAAATAATACA-AATTTAAA
1 AATATAATAAATAATA-ATAATTTAAA
** *
87296927 AATATAATACTTAATAATAATTTCAA
1 AATATAATAAATAATAATAATTTAAA
87296953 AATA
1 AATA
87296957 GCATTATTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (26 bp):
AATATAATAAATAATAATAATTTAAA
Found at i:87300520 original size:45 final size:46
Alignment explanation
Indices: 87300471--87300560 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 46
87300461 TTTGCATTTT
*
87300471 GAGAAAACCAT-ATTCATTTCCAAATGGTTT-CATTTCTTTATTTCA
1 GAGAAAACCATAATT-ATTTCCAAATGGTTTCCATTTCTCTATTTCA
** *
87300516 GAGAAAACCATAATTATTTCTGAATGTTTTCCATTTCTCTATTTC
1 GAGAAAACCATAATTATTTCCAAATGGTTTCCATTTCTCTATTTC
87300561 TATTCATTTC
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
45 23 0.59
46 16 0.41
ACGTcount: A:0.30, C:0.18, G:0.09, T:0.43
Consensus pattern (46 bp):
GAGAAAACCATAATTATTTCCAAATGGTTTCCATTTCTCTATTTCA
Found at i:87304661 original size:26 final size:25
Alignment explanation
Indices: 87304618--87304722 Score: 176
Period size: 26 Copynumber: 4.2 Consensus size: 25
87304608 TGATACAAAT
87304618 TGATAATGGTTAGGTAAATGTTCCA
1 TGATAATGGTTAGGTAAATGTTCCA
*
87304643 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGG-TTAGGTAAATGTTCCA
87304669 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAAT-GGTTAGGTAAATGTTCCA
87304695 TGATAATGGTTAGGTAAATGTT-CA
1 TGATAATGGTTAGGTAAATGTTCCA
87304719 TGAT
1 TGAT
87304723 GAATTTCATG
Statistics
Matches: 76, Mismatches: 2, Indels: 5
0.92 0.02 0.06
Matches are distributed among these distances:
24 6 0.08
25 24 0.32
26 44 0.58
27 2 0.03
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.36
Consensus pattern (25 bp):
TGATAATGGTTAGGTAAATGTTCCA
Found at i:87306221 original size:25 final size:26
Alignment explanation
Indices: 87306193--87306244 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
87306183 TTTACAGTTT
87306193 TACCCCTAGAGATAAATT-ACCGAAA
1 TACCCCTAGAGATAAATTGACCGAAA
* * *
87306218 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGAGATAAATTGACCGAAA
87306244 T
1 T
87306245 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.38, C:0.23, G:0.13, T:0.25
Consensus pattern (26 bp):
TACCCCTAGAGATAAATTGACCGAAA
Found at i:87310371 original size:26 final size:26
Alignment explanation
Indices: 87310342--87310449 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
87310332 TGATACAAAT
87310342 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
87310368 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
87310394 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
87310420 TGATAATGGTTTAGGTAAATTTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
87310446 TGAT
1 TGAT
87310450 GGGAATTTTA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.32, C:0.07, G:0.23, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:87315258 original size:2 final size:2
Alignment explanation
Indices: 87315246--87315281 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
87315236 GACCTGTTGA
*
87315246 AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
87315282 GTCAAATGTT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:87315708 original size:5 final size:5
Alignment explanation
Indices: 87315698--87315736 Score: 78
Period size: 5 Copynumber: 7.8 Consensus size: 5
87315688 AATTGATCGT
87315698 ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATAT
1 ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATAT
87315737 GCATGTATTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 34 1.00
ACGTcount: A:0.41, C:0.18, G:0.00, T:0.41
Consensus pattern (5 bp):
ATATC
Found at i:87317722 original size:30 final size:32
Alignment explanation
Indices: 87317682--87317742 Score: 83
Period size: 30 Copynumber: 2.0 Consensus size: 32
87317672 AATTATAAAG
*
87317682 TTAATTTATAAAAT-TATGTTT-ATAT-TTGAT
1 TTAATATATAAAATATA-GTTTAATATATTGAT
87317712 TTAATATATAAAATATAGTTTAATATATTGA
1 TTAATATATAAAATATAGTTTAATATATTGA
87317743 AATTAAAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
30 17 0.63
31 6 0.22
32 4 0.15
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.51
Consensus pattern (32 bp):
TTAATATATAAAATATAGTTTAATATATTGAT
Found at i:87319166 original size:90 final size:90
Alignment explanation
Indices: 87319011--87319294 Score: 356
Period size: 90 Copynumber: 3.2 Consensus size: 90
87319001 ACTATTATTC
* * * *
87319011 AAAATGTTCATATTATTTTTGTATCC-GTAAATCAATTTTAGTCTGTATTATTTGTTGGTCAAAT
1 AAAATGTTCGTATTATTTTTGCA-CCTGTAAATAAATTTTAGTCTGTATTATTTGTTGGTCGAAT
*
87319075 TTTATATTTTCGTATATCAGTTTTGT
65 TTTATATTTTCGTATATCAATTTTGT
* * ** *
87319101 AAAATGTTTGTATTATTTTTGGATTTGTAAA-AATATTTTAGTCTGTATTATTTGTCGGTCGAAT
1 AAAATGTTCGTATTATTTTTGCACCTGTAAATAA-ATTTTAGTCTGTATTATTTGTTGGTCGAAT
*
87319165 TTTATATTTTCGTATATCAATTTTAT
65 TTTATATTTTCGTATATCAATTTTGT
* * * *
87319191 AAAATGTTCGTATTATTTTTGCACCTGTAAATAAAATTTAGTCGGTATTATCTGTTGGTTGAATT
1 AAAATGTTCGTATTATTTTTGCACCTGTAAATAAATTTTAGTCTGTATTATTTGTTGGTCGAATT
* * *
87319256 ATATATTTTTGTATATTAATTTTGT
66 TTATATTTTCGTATATCAATTTTGT
* *
87319281 AGAATATTCGTATT
1 AAAATGTTCGTATT
87319295 TTCTTGTATA
Statistics
Matches: 166, Mismatches: 25, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
89 1 0.01
90 163 0.98
91 2 0.01
ACGTcount: A:0.28, C:0.07, G:0.13, T:0.51
Consensus pattern (90 bp):
AAAATGTTCGTATTATTTTTGCACCTGTAAATAAATTTTAGTCTGTATTATTTGTTGGTCGAATT
TTATATTTTCGTATATCAATTTTGT
Found at i:87322592 original size:21 final size:20
Alignment explanation
Indices: 87322554--87322596 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
87322544 ATCCCAATCC
87322554 CATGCATCAGATAATAACAA
1 CATGCATCAGATAATAACAA
87322574 CATGCATGCAG-TAAATAACAA
1 CATGCAT-CAGAT-AATAACAA
87322595 CA
1 CA
87322597 GTCAAACATG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 8 0.38
21 13 0.62
ACGTcount: A:0.49, C:0.21, G:0.12, T:0.19
Consensus pattern (20 bp):
CATGCATCAGATAATAACAA
Found at i:87324180 original size:26 final size:26
Alignment explanation
Indices: 87324144--87324253 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
87324134 CATGAAATTC
87324144 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
87324170 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
87324196 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
87324222 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
87324248 TTATCA
1 TTATCA
87324254 ATTTGTATCA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:87325069 original size:64 final size:63
Alignment explanation
Indices: 87325000--87325614 Score: 656
Period size: 64 Copynumber: 10.1 Consensus size: 63
87324990 TATCTATACA
*
87325000 ATTTTTTATTTATACTTAAATTAATATTTTTATTGC-TTTTTAATTAAAATCTATCTATTCAATT
1 ATTTTTTATTTATACTTTAATTAA-ATTTTTATT-CTTTTTTAATTAAAATCTATCTATTCAATT
* * * *
87325064 ATTTTTTATTTATAC--T--TTAAA----TA--ATTTTTTAATTAAAATCGATCTACTCGATT
1 ATTTTTTATTTATACTTTAATTAAATTTTTATTCTTTTTTAATTAAAATCTATCTATTCAATT
* * * * *
87325117 ATTTTTTAATTTATGCTTTGATTAAATTTTTATTCTTTTTTTAATAAAAATATATCTATTCGATT
1 ATTTTTT-ATTTATACTTTAATTAAATTTTTATTC-TTTTTTAATTAAAATCTATCTATTCAATT
* * * * **
87325182 ATTTTTTATTTATACTTAAATTAATTTTTTTATTCTTTTTTAATAAAAATATATCTATTCGTTT
1 ATTTTTTATTTATACTTTAATTAA-ATTTTTATTCTTTTTTAATTAAAATCTATCTATTCAATT
* * **
87325246 ATTTTTTAATTTATACTTTAATTGATTTTTTATTCTTTTTTAATTAAAATCTATCTATTTGATT
1 ATTTTTT-ATTTATACTTTAATTAAATTTTTATTCTTTTTTAATTAAAATCTATCTATTCAATT
** * *
87325310 ACATTTAATTTATACTTTAATT-AATTTTT-TTCTTTTTTAATT--AA--TATATATTCAATT
1 ATTTTTTATTTATACTTTAATTAAATTTTTATTCTTTTTTAATTAAAATCTATCTATTCAATT
* *
87325367 A-TTTTTATTTATACTTTAATTAATTTTTTATTCCTTTTTAATTAAAATCTATCTATTCAATT
1 ATTTTTTATTTATACTTTAATTAAATTTTTATTCTTTTTTAATTAAAATCTATCTATTCAATT
* * ** *
87325429 ATTTTTAATATATACTTTAATTACTTTTTTATTCTTTTTTAATTAAAATCTATCTATTCCATT
1 ATTTTTTATTTATACTTTAATTAAATTTTTATTCTTTTTTAATTAAAATCTATCTATTCAATT
* *
87325492 ATTTTTAATTTATACTTTAAAT-AATTTTT-TTC-TTTTTAATTAAAA--TA--TATTCAATT
1 ATTTTTTATTTATACTTTAATTAAATTTTTATTCTTTTTTAATTAAAATCTATCTATTCAATT
* *
87325548 ATTTTTTATTTATGCCTTAATT-AATTTTT-TTCTTTTTTAATT-AAATCTATCTATTCAATT
1 ATTTTTTATTTATACTTTAATTAAATTTTTATTCTTTTTTAATTAAAATCTATCTATTCAATT
*
87325608 GTTTTTT
1 ATTTTTT
87325615 TATCTAAATT
Statistics
Matches: 475, Mismatches: 49, Indels: 58
0.82 0.08 0.10
Matches are distributed among these distances:
53 32 0.07
54 7 0.01
55 2 0.00
56 58 0.12
57 26 0.05
58 21 0.04
59 3 0.01
60 34 0.07
61 16 0.03
62 26 0.05
63 91 0.19
64 103 0.22
65 56 0.12
ACGTcount: A:0.31, C:0.08, G:0.02, T:0.60
Consensus pattern (63 bp):
ATTTTTTATTTATACTTTAATTAAATTTTTATTCTTTTTTAATTAAAATCTATCTATTCAATT
Found at i:87325101 original size:53 final size:54
Alignment explanation
Indices: 87325036--87325521 Score: 190
Period size: 63 Copynumber: 8.1 Consensus size: 54
87325026 TTTTTATTGC
*
87325036 TTTTTAATTAAAATCTATCTATTCAATTATTTTTTATTTATACTTTAAA-TAAT
1 TTTTTAATTAAAATCTATCTATTCGATTATTTTTTATTTATACTTTAAATTAAT
* * * *
87325089 TTTTTAATTAAAATCGATCTACTCGATTATTTTTTAATTTATGCTTTGATTAAATTTTTATTCTT
1 TTTTTAATTAAAATCTATCTATTCGATTATTTTTT-ATTTATAC--T--TTAAA---TTA---AT
* *
87325154 TTTTTAATAAAAATATATCTATTCGATTATTTTTTATTTATAC-TTAAATTAATTTTTTTATTCT
1 TTTTTAATTAAAATCTATCTATTCGATTATTTTTTATTTATACTTTAAATT-A-------A---T
* * * *
87325218 TTTTTAATAAAAATATATCTATTCGTTTATTTTTTAATTTATACTTTAATTGATTTTTTATTCT
1 TTTTTAATTAAAATCTATCTATTCGATTATTTTTT-ATTTATACTTTAA---A----TTA--AT
* ** *
87325282 TTTTTAATTAAAATCTATCTATTTGATTACATTTAATTTATACTTT-AATTAATTT
1 TTTTTAATTAAAATCTATCTATTCGATTATTTTTTATTTATACTTTAAATTAA--T
** * * * * * *
87325337 TTTTCTTTTTTAATTAATATATATTCAATTA-TTTTTATTTATACTTTAATTAATTTTTTATT
1 TTTT-TAATTAAAAT-CTATCTATTCGATTATTTTTTATTTATACTTT-A--AA----TTAAT
* * * *
87325399 CCTTTTTAATTAAAATCTATCTATTCAATTATTTTTAATATATACTTTAATTACTTTTTTATTCT
1 --TTTTTAATTAAAATCTATCTATTCGATTATTTTTTATTTATACTTTAA--A-----TTA--AT
* *
87325464 TTTTTAATTAAAATCTATCTATTCCATTATTTTTAATTTATACTTTAAA-TAAT
1 TTTTTAATTAAAATCTATCTATTCGATTATTTTTTATTTATACTTTAAATTAAT
87325517 TTTTT
1 TTTTT
87325522 TCTTTTTAAT
Statistics
Matches: 339, Mismatches: 45, Indels: 98
0.70 0.09 0.20
Matches are distributed among these distances:
53 38 0.11
54 7 0.02
55 10 0.03
56 23 0.07
57 12 0.04
58 5 0.01
59 6 0.02
60 3 0.01
61 3 0.01
62 19 0.06
63 84 0.25
64 78 0.23
65 41 0.12
66 4 0.01
67 2 0.01
69 1 0.00
72 1 0.00
73 2 0.01
ACGTcount: A:0.31, C:0.08, G:0.02, T:0.59
Consensus pattern (54 bp):
TTTTTAATTAAAATCTATCTATTCGATTATTTTTTATTTATACTTTAAATTAAT
Found at i:87325147 original size:54 final size:53
Alignment explanation
Indices: 87325036--87325148 Score: 154
Period size: 53 Copynumber: 2.1 Consensus size: 53
87325026 TTTTTATTGC
* * *
87325036 TTTTTAATTAAAATCTATCTATTCAATTATTTTTTATTTATACTTTAAATAAT
1 TTTTTAATTAAAATCGATCTACTCAATTATTTTTTATTTATACTTTAAATAAA
* * * *
87325089 TTTTTAATTAAAATCGATCTACTCGATTATTTTTTAATTTATGCTTTGATTAAA
1 TTTTTAATTAAAATCGATCTACTCAATTATTTTTT-ATTTATACTTTAAATAAA
87325143 TTTTTA
1 TTTTTA
87325149 TTCTTTTTTT
Statistics
Matches: 52, Mismatches: 7, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
53 32 0.62
54 20 0.38
ACGTcount: A:0.33, C:0.08, G:0.04, T:0.56
Consensus pattern (53 bp):
TTTTTAATTAAAATCGATCTACTCAATTATTTTTTATTTATACTTTAAATAAA
Found at i:87325156 original size:63 final size:64
Alignment explanation
Indices: 87325088--87325614 Score: 596
Period size: 63 Copynumber: 8.6 Consensus size: 64
87325078 CTTTAAATAA
* * * * *
87325088 TTTTTTAATTAAAATCGATCTACTCGATTATTTTTTAATTTATGCTTTGATTAAATTTTTATTC
1 TTTTTTAATTAAAATCTATCTATTCAATTATTTTTTAATTTATACTTTAATTAAATTTTTATTC
* * * * *
87325152 TTTTTTTAATAAAAATATATCTATTCGATTATTTTTT-ATTTATACTTAAATTAATTTTTTTATT
1 -TTTTTTAATTAAAATCTATCTATTCAATTATTTTTTAATTTATACTTTAATTAA-ATTTTTATT
87325216 C
64 C
* * ** * *
87325217 TTTTTTAATAAAAATATATCTATTCGTTTATTTTTTAATTTATACTTTAATTGATTTTTTATTC
1 TTTTTTAATTAAAATCTATCTATTCAATTATTTTTTAATTTATACTTTAATTAAATTTTTATTC
** **
87325281 TTTTTTAATTAAAATCTATCTATTTGATTA-CATTTAATTTATACTTTAATT-AATTTTT-TTC
1 TTTTTTAATTAAAATCTATCTATTCAATTATTTTTTAATTTATACTTTAATTAAATTTTTATTC
* *
87325342 TTTTTTAATT--AA--TATATATTCAATTA-TTTTT-ATTTATACTTTAATTAATTTTTTATTC
1 TTTTTTAATTAAAATCTATCTATTCAATTATTTTTTAATTTATACTTTAATTAAATTTTTATTC
* * **
87325400 CTTTTTAATTAAAATCTATCTATTCAATTA-TTTTTAATATATACTTTAATTACTTTTTTATTC
1 TTTTTTAATTAAAATCTATCTATTCAATTATTTTTTAATTTATACTTTAATTAAATTTTTATTC
* *
87325463 TTTTTTAATTAAAATCTATCTATTCCATTA-TTTTTAATTTATACTTTAAAT-AATTTTT-TTC
1 TTTTTTAATTAAAATCTATCTATTCAATTATTTTTTAATTTATACTTTAATTAAATTTTTATTC
* *
87325524 -TTTTTAATTAAAA--TA--TATTCAATTATTTTTT-ATTTATGCCTTAATT-AATTTTT-TTC
1 TTTTTTAATTAAAATCTATCTATTCAATTATTTTTTAATTTATACTTTAATTAAATTTTTATTC
*
87325580 TTTTTTAATT-AAATCTATCTATTCAATTGTTTTTT
1 TTTTTTAATTAAAATCTATCTATTCAATTATTTTTT
87325615 TATCTAAATT
Statistics
Matches: 408, Mismatches: 39, Indels: 35
0.85 0.08 0.07
Matches are distributed among these distances:
56 49 0.12
57 34 0.08
58 16 0.04
59 2 0.00
60 30 0.07
61 16 0.04
62 29 0.07
63 91 0.22
64 85 0.21
65 56 0.14
ACGTcount: A:0.30, C:0.08, G:0.02, T:0.60
Consensus pattern (64 bp):
TTTTTTAATTAAAATCTATCTATTCAATTATTTTTTAATTTATACTTTAATTAAATTTTTATTC
Found at i:87325184 original size:34 final size:33
Alignment explanation
Indices: 87325145--87325252 Score: 109
Period size: 33 Copynumber: 3.3 Consensus size: 33
87325135 TGATTAAATT
87325145 TTTATTCTTTTTTTAATAAAAATATATCTATTCG
1 TTTATT-TTTTTTTAATAAAAATATATCTATTCG
* * *
87325179 ATTATTTTTTATTTATACTTAAATTA-AT-T-TT--
1 TTTATTTTTT-TTTA-A-TAAAAATATATCTATTCG
*
87325210 TTTATTCTTTTTTAATAAAAATATATCTATTCG
1 TTTATTTTTTTTTAATAAAAATATATCTATTCG
87325243 TTTATTTTTT
1 TTTATTTTTT
87325253 AATTTATACT
Statistics
Matches: 58, Mismatches: 8, Indels: 17
0.70 0.10 0.20
Matches are distributed among these distances:
28 6 0.10
29 3 0.05
30 5 0.09
31 10 0.17
33 15 0.26
34 10 0.17
35 3 0.05
36 6 0.10
ACGTcount: A:0.31, C:0.06, G:0.02, T:0.61
Consensus pattern (33 bp):
TTTATTTTTTTTTAATAAAAATATATCTATTCG
Found at i:87325187 original size:30 final size:30
Alignment explanation
Indices: 87325153--87325255 Score: 84
Period size: 30 Copynumber: 3.3 Consensus size: 30
87325143 TTTTTATTCT
87325153 TTTTTTAATAAAAATATATCTATTCGATTA
1 TTTTTTAATAAAAATATATCTATTCGATTA
* * ** *
87325183 TTTTTTATTTATACTTAAAT-TAAT-TTTTTTATTC
1 TTTTTTA---ATA--AAAATAT-ATCTATTCGATTA
*
87325217 TTTTTTAATAAAAATATATCTATTCGTTTA
1 TTTTTTAATAAAAATATATCTATTCGATTA
87325247 TTTTTTAAT
1 TTTTTTAAT
87325256 TTATACTTTA
Statistics
Matches: 54, Mismatches: 11, Indels: 16
0.67 0.14 0.20
Matches are distributed among these distances:
29 6 0.11
30 22 0.41
31 3 0.06
33 3 0.06
34 14 0.26
35 6 0.11
ACGTcount: A:0.33, C:0.06, G:0.02, T:0.59
Consensus pattern (30 bp):
TTTTTTAATAAAAATATATCTATTCGATTA
Found at i:87325340 original size:182 final size:180
Alignment explanation
Indices: 87325088--87325613 Score: 637
Period size: 182 Copynumber: 2.8 Consensus size: 180
87325078 CTTTAAATAA
* * * ** * * *
87325088 TTTTTTAATTAAAATCGATCTACTCGATTATTTTTTAATTTATGCTTTGATTAAATTTTTATTCT
1 TTTTTTAATTAAAATCTATCTATTCCATTA-CATTTAATTTATACTTTAAAT-AA-TTTT-TT-T
* *
87325153 TTTTTTAATAAAAATATATCTATTCGATTATTTTTTATTTATACTTAAATTAATTTTTTTATTCT
61 TTTTTTAAT--TAATATA--TATTCAATTATTTTTTATTTATACTT-AATTAA-TTTTTTATTCT
* ** *
87325218 TTTTTAATAAAAATATATCTATTCGTTTATTTTTTAATTTATACTTTAATTGA-TTTTTTATTC
120 TTTTTAAT-AAAATCTATCTATTCAATTA-TTTTTAATATATACTTTAATT-ACTTTTTTATTC
** *
87325281 TTTTTTAATTAAAATCTATCTATTTGATTACATTTAATTTATACTTTAATTAATTTTTTTCTTTT
1 TTTTTTAATTAAAATCTATCTATTCCATTACATTTAATTTATACTTTAAATAATTTTTTT-TTTT
*
87325346 TTAATTAATATATATTCAATTA-TTTTTATTTATACTTTAATTAATTTTTTATTCCTTTTTAATT
65 TTAATTAATATATATTCAATTATTTTTTATTTATAC-TTAATTAATTTTTTATTCTTTTTTAA-T
87325410 AAAATCTATCTATTCAATTATTTTTAATATATACTTTAATTACTTTTTTATTC
128 AAAATCTATCTATTCAATTATTTTTAATATATACTTTAATTACTTTTTTATTC
** *
87325463 TTTTTTAATTAAAATCTATCTATTCCATTATTTTTAATTTATACTTTAAATAATTTTTTTCTTTT
1 TTTTTTAATTAAAATCTATCTATTCCATTACATTTAATTTATACTTTAAATAATTTTTTTTTTTT
* * *
87325528 TAATTAAAATATATTCAATTATTTTTTATTTATGCCTTAATTAA-TTTTT-TTCTTTTTTAATTA
66 TAATTAATATATATTCAATTATTTTTTATTTAT-ACTTAATTAATTTTTTATTCTTTTTTAATAA
*
87325591 AATCTATCTATTCAATTGTTTTT
130 AATCTATCTATTCAATTATTTTT
87325614 TTATCTAAAT
Statistics
Matches: 302, Mismatches: 25, Indels: 26
0.86 0.07 0.07
Matches are distributed among these distances:
179 24 0.08
180 10 0.03
181 30 0.10
182 104 0.34
183 35 0.12
184 20 0.07
185 11 0.04
187 6 0.02
188 1 0.00
189 11 0.04
190 4 0.01
191 2 0.01
192 17 0.06
193 27 0.09
ACGTcount: A:0.30, C:0.08, G:0.02, T:0.60
Consensus pattern (180 bp):
TTTTTTAATTAAAATCTATCTATTCCATTACATTTAATTTATACTTTAAATAATTTTTTTTTTTT
TAATTAATATATATTCAATTATTTTTTATTTATACTTAATTAATTTTTTATTCTTTTTTAATAAA
ATCTATCTATTCAATTATTTTTAATATATACTTTAATTACTTTTTTATTC
Found at i:87325379 original size:119 final size:122
Alignment explanation
Indices: 87325114--87325614 Score: 522
Period size: 119 Copynumber: 4.1 Consensus size: 122
87325104 GATCTACTCG
* * *
87325114 ATTATTTTTTAATTTATGCTTTGATTAAATTTTTATTCTTTTTTTAATAAAAATATATCTATTCG
1 ATTATTTTTTAATTTATACTTTAATTAAATTTTTATTC-TTTTTTAATTAAAATATATCTATTCG
* * * *
87325179 ATTATTTTTTATTTATACTTAAATTAATTTTTTTATTCTTTTTTAATAAAAATATATCTATTCG
65 ATTATTTTTAATTTATACTTTAATTAA--TTTTTATTCTTTTTTAAT--TAATATA--TATTCA
* * * * *
87325243 TTTATTTTTTAATTTATACTTTAATTGATTTTTTATTCTTTTTTAATTAAAATCTATCTATTTGA
1 ATTATTTTTTAATTTATACTTTAATTAAATTTTTATTCTTTTTTAATTAAAATATATCTATTCGA
**
87325308 TTACATTTAATTTATACTTTAATTAATTTTT-TTCTTTTTTAATTAATATATATTCA
66 TTATTTTTAATTTATACTTTAATTAATTTTTATTCTTTTTTAATTAATATATATTCA
* * * *
87325364 ATTA-TTTTT-ATTTATACTTTAATTAATTTTTTATTCCTTTTTAATTAAAATCTATCTATTCAA
1 ATTATTTTTTAATTTATACTTTAATTAAATTTTTATTCTTTTTTAATTAAAATATATCTATTCGA
* * * *
87325427 TTATTTTTAATATATACTTTAATTACTTTTTTATTCTTTTTTAATTAAAATCTATCTATTCC
66 TTATTTTTAATTTATACTTTAATTA-ATTTTTATTCTTTTTTAATT--AA--TATATATTCA
* *
87325489 ATTA-TTTTTAATTTATACTTTAAAT-AATTTTT-TTC-TTTTTAATT-AAA-ATA--TATTCAA
1 ATTATTTTTTAATTTATACTTTAATTAAATTTTTATTCTTTTTTAATTAAAATATATCTATTCGA
* * * *
87325546 TTATTTTTTATTTATGCCTTAATTAATTTTT-TTCTTTTTTAATTAAATCTATCTATTCA
66 TTATTTTTAATTTATACTTTAATTAATTTTTATTCTTTTTTAATT-AA--TATATATTCA
*
87325605 ATTGTTTTTT
1 ATTATTTTTT
87325615 TATCTAAATT
Statistics
Matches: 329, Mismatches: 35, Indels: 28
0.84 0.09 0.07
Matches are distributed among these distances:
116 17 0.05
117 18 0.05
118 5 0.02
119 100 0.30
120 10 0.03
121 23 0.07
122 3 0.01
123 17 0.05
124 3 0.01
125 35 0.11
126 19 0.06
128 46 0.14
129 33 0.10
ACGTcount: A:0.30, C:0.08, G:0.02, T:0.60
Consensus pattern (122 bp):
ATTATTTTTTAATTTATACTTTAATTAAATTTTTATTCTTTTTTAATTAAAATATATCTATTCGA
TTATTTTTAATTTATACTTTAATTAATTTTTATTCTTTTTTAATTAATATATATTCA
Found at i:87325450 original size:22 final size:22
Alignment explanation
Indices: 87325350--87325457 Score: 61
Period size: 23 Copynumber: 5.1 Consensus size: 22
87325340 TCTTTTTTAA
*
87325350 TTAATATATA-TTCAATTATTT
1 TTAATATATACTTTAATTATTT
*
87325371 TT-ATTTATACTTTAATTAATTT
1 TTAATATATACTTTAATT-ATTT
* *
87325393 TT--TAT-TCCTTT--TTAATT
1 TTAATATATACTTTAATTATTT
** *
87325410 AAAATCTAT-CTATTCAATTATTT
1 TTAATATATACT-TT-AATTATTT
87325433 TTAATATATACTTTAATTACTTT
1 TTAATATATACTTTAATTA-TTT
87325456 TT
1 TT
87325458 TATTCTTTTT
Statistics
Matches: 64, Mismatches: 12, Indels: 20
0.67 0.12 0.21
Matches are distributed among these distances:
17 3 0.05
18 2 0.03
19 4 0.06
20 14 0.22
21 10 0.16
22 11 0.17
23 18 0.28
24 2 0.03
ACGTcount: A:0.32, C:0.08, G:0.00, T:0.59
Consensus pattern (22 bp):
TTAATATATACTTTAATTATTT
Found at i:87327839 original size:39 final size:39
Alignment explanation
Indices: 87327785--87327864 Score: 160
Period size: 39 Copynumber: 2.1 Consensus size: 39
87327775 TTCTGAAGTA
87327785 GAAAAATTTATTCTGATTAATTTTTATAATTTATTGAGT
1 GAAAAATTTATTCTGATTAATTTTTATAATTTATTGAGT
87327824 GAAAAATTTATTCTGATTAATTTTTATAATTTATTGAGT
1 GAAAAATTTATTCTGATTAATTTTTATAATTTATTGAGT
87327863 GA
1 GA
87327865 TTAGATGCAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.36, C:0.03, G:0.11, T:0.50
Consensus pattern (39 bp):
GAAAAATTTATTCTGATTAATTTTTATAATTTATTGAGT
Found at i:87330956 original size:14 final size:14
Alignment explanation
Indices: 87330920--87330964 Score: 56
Period size: 14 Copynumber: 3.2 Consensus size: 14
87330910 ATCTTGAAAC
87330920 AATACAAATTTAGAA
1 AATACAAATTTA-AA
*
87330935 AA-ATAAATTTAAA
1 AATACAAATTTAAA
*
87330948 AATACAAATTGAAA
1 AATACAAATTTAAA
87330962 AAT
1 AAT
87330965 CTTGAAAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
13 4 0.15
14 20 0.77
15 2 0.08
ACGTcount: A:0.64, C:0.04, G:0.04, T:0.27
Consensus pattern (14 bp):
AATACAAATTTAAA
Found at i:87331009 original size:19 final size:19
Alignment explanation
Indices: 87330969--87331009 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
87330959 AAAAATCTTG
*
87330969 AAAAAAATACAAATAGATC
1 AAAAAAATACAAATAGAAC
87330988 AAAAAAATA-AAATATGAAC
1 AAAAAAATACAAATA-GAAC
87331007 AAA
1 AAA
87331010 TCAATTTTGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 5 0.25
19 15 0.75
ACGTcount: A:0.73, C:0.07, G:0.05, T:0.15
Consensus pattern (19 bp):
AAAAAAATACAAATAGAAC
Found at i:87333142 original size:43 final size:43
Alignment explanation
Indices: 87333081--87333165 Score: 170
Period size: 43 Copynumber: 2.0 Consensus size: 43
87333071 ACTCTATTCA
87333081 AAGCTTGCCAATGCAAACTACTTGGATTACTTGTGTACCTACG
1 AAGCTTGCCAATGCAAACTACTTGGATTACTTGTGTACCTACG
87333124 AAGCTTGCCAATGCAAACTACTTGGATTACTTGTGTACCTAC
1 AAGCTTGCCAATGCAAACTACTTGGATTACTTGTGTACCTAC
87333166 TCAATTTTCC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.31
Consensus pattern (43 bp):
AAGCTTGCCAATGCAAACTACTTGGATTACTTGTGTACCTACG
Found at i:87334205 original size:12 final size:12
Alignment explanation
Indices: 87334188--87334218 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
87334178 GAAACATAAT
87334188 GAAATCTGGTCC
1 GAAATCTGGTCC
87334200 GAAATCTGGTCC
1 GAAATCTGGTCC
*
87334212 AAAATCT
1 GAAATCT
87334219 TTGACCTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (12 bp):
GAAATCTGGTCC
Found at i:87338268 original size:49 final size:49
Alignment explanation
Indices: 87338148--87338416 Score: 299
Period size: 49 Copynumber: 5.5 Consensus size: 49
87338138 ACTATGTGAT
* * * * * *
87338148 TATGTGATCCCATATAAGACCATATCTAGGATATGGCATCAGTGTGATTA
1 TATGTGATTCCGTATAAGACCATATCTGGGATATGGCATCGGTATG-TAA
* * *
87338198 TATGT--TTTCGTATAAGACCATATATGGGATATGGCATTGGTATGTAA
1 TATGTGATTCCGTATAAGACCATATCTGGGATATGGCATCGGTATGTAA
* * *
87338245 TATGTGATTCTGTATAAGACCATATCTGGGATATGACATCGGTATGTGA
1 TATGTGATTCCGTATAAGACCATATCTGGGATATGGCATCGGTATGTAA
* * *
87338294 TATGTGATTCCGTATAATACCATATCTGGGATATGGCATCGGTACGTGA
1 TATGTGATTCCGTATAAGACCATATCTGGGATATGGCATCGGTATGTAA
* * * * *
87338343 TATGTGATTCCGTATAAGACCATATTTGGGCTATGGCATTGGTTTGTGAT
1 TATGTGATTCCGTATAAGACCATATCTGGGATATGGCATCGGTATGT-AA
* * *
87338393 TATGTGACTCTGTTTAAGACCATA
1 TATGTGATTCCGTATAAGACCATA
87338417 GTTTTACTAT
Statistics
Matches: 186, Mismatches: 30, Indels: 6
0.84 0.14 0.03
Matches are distributed among these distances:
47 7 0.04
48 31 0.17
49 122 0.66
50 26 0.14
ACGTcount: A:0.28, C:0.13, G:0.23, T:0.36
Consensus pattern (49 bp):
TATGTGATTCCGTATAAGACCATATCTGGGATATGGCATCGGTATGTAA
Found at i:87340310 original size:20 final size:20
Alignment explanation
Indices: 87340273--87340315 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
87340263 AAAATAAACA
* **
87340273 TATAATTATTCATTTAATAT
1 TATAACTATTCAAATAATAT
*
87340293 TATAACTATTCAAATAATTT
1 TATAACTATTCAAATAATAT
87340313 TAT
1 TAT
87340316 TTAAATGGTT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.42, C:0.07, G:0.00, T:0.51
Consensus pattern (20 bp):
TATAACTATTCAAATAATAT
Found at i:87342094 original size:54 final size:54
Alignment explanation
Indices: 87341993--87342123 Score: 165
Period size: 54 Copynumber: 2.4 Consensus size: 54
87341983 GGGGTGTCAG
*
87341993 CCATAAGTGTCCCAACACCCAATTTTTTTTAAAAAATCTGGTATTGGGGTGCCGA
1 CCATCAGTGTCCCAACACCCAATTTTTTTT-AAAAATCTGGTATTGGGGTGCCGA
* * * * *
87342048 TCATCATTGTCCCAATACCCCAATTTTTTTT-TAAATCTGGTATTGGGGTGTCGA
1 CCATCAGTGTCCCAACA-CCCAATTTTTTTTAAAAATCTGGTATTGGGGTGCCGA
* *
87342102 CCATCAGTGTCCGAGCACCCAA
1 CCATCAGTGTCCCAACACCCAA
87342124 AAAAATTTTC
Statistics
Matches: 64, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
53 5 0.08
54 33 0.52
55 13 0.20
56 13 0.20
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (54 bp):
CCATCAGTGTCCCAACACCCAATTTTTTTTAAAAATCTGGTATTGGGGTGCCGA
Found at i:87343645 original size:17 final size:18
Alignment explanation
Indices: 87343613--87343650 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
87343603 TAATTTAACT
87343613 TTAATTAAATTATTTAAA
1 TTAATTAAATTATTTAAA
*
87343631 TTAATT-AATTTTTTAAA
1 TTAATTAAATTATTTAAA
87343648 TTA
1 TTA
87343651 TAAACAAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 13 0.68
18 6 0.32
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (18 bp):
TTAATTAAATTATTTAAA
Found at i:87344808 original size:10 final size:10
Alignment explanation
Indices: 87344795--87344829 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
87344785 TATATATATA
87344795 TGTGTGCGTG
1 TGTGTGCGTG
87344805 TGTGTGCGTG
1 TGTGTGCGTG
* *
87344815 CGTGTGTGTG
1 TGTGTGCGTG
87344825 TGTGT
1 TGTGT
87344830 AAATTGTTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.00, C:0.09, G:0.49, T:0.43
Consensus pattern (10 bp):
TGTGTGCGTG
Found at i:87344817 original size:14 final size:14
Alignment explanation
Indices: 87344798--87344824 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
87344788 ATATATATGT
87344798 GTGCGTGTGTGTGC
1 GTGCGTGTGTGTGC
87344812 GTGCGTGTGTGTG
1 GTGCGTGTGTGTG
87344825 TGTGTAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.00, C:0.11, G:0.52, T:0.37
Consensus pattern (14 bp):
GTGCGTGTGTGTGC
Found at i:87349278 original size:5 final size:5
Alignment explanation
Indices: 87349268--87349295 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
87349258 AAACCAGATA
87349268 TTATT TTATT TTATT TTATT TTATT TTA
1 TTATT TTATT TTATT TTATT TTATT TTA
87349296 GTAAATATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (5 bp):
TTATT
Found at i:87350785 original size:16 final size:16
Alignment explanation
Indices: 87350764--87350794 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
87350754 AAGGGCACTT
*
87350764 TTGTATTTTTTTTTCA
1 TTGTATTATTTTTTCA
87350780 TTGTATTATTTTTTC
1 TTGTATTATTTTTTC
87350795 CTATAAATAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.13, C:0.06, G:0.06, T:0.74
Consensus pattern (16 bp):
TTGTATTATTTTTTCA
Found at i:87353421 original size:2 final size:2
Alignment explanation
Indices: 87353414--87353438 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
87353404 TTACACAAAT
87353414 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
87353439 GATAATTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:87354587 original size:30 final size:29
Alignment explanation
Indices: 87354525--87354594 Score: 79
Period size: 30 Copynumber: 2.4 Consensus size: 29
87354515 TATCATTTGG
*
87354525 TAAAAACTAAAATTTTAAAATTCAAAAGA
1 TAAAAACTAAAATTATAAAATTCAAAAGA
* * *
87354554 TAAAAAACTAAAAGTTATCAAATT-TAAATA
1 T-AAAAACTAAAA-TTATAAAATTCAAAAGA
87354584 TAAAAACTAAA
1 TAAAAACTAAA
87354595 TTTTCAATTT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
29 11 0.31
30 16 0.46
31 8 0.23
ACGTcount: A:0.63, C:0.07, G:0.03, T:0.27
Consensus pattern (29 bp):
TAAAAACTAAAATTATAAAATTCAAAAGA
Found at i:87356209 original size:4 final size:4
Alignment explanation
Indices: 87356200--87356224 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
87356190 TTTTGCACCA
87356200 TTAT TTAT TTAT TTAT TTAT TTAT T
1 TTAT TTAT TTAT TTAT TTAT TTAT T
87356225 CAAGTTTCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTAT
Found at i:87362383 original size:2 final size:2
Alignment explanation
Indices: 87362376--87362422 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
87362366 GCATACAAGA
87362376 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
87362418 AT AT A
1 AT AT A
87362423 GCATGTATTG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:87362732 original size:13 final size:14
Alignment explanation
Indices: 87362705--87362735 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
87362695 AGTATTTGCT
87362705 ATATAATATACAAA
1 ATATAATATACAAA
87362719 ATATAATA-ACAAA
1 ATATAATATACAAA
87362732 ATAT
1 ATAT
87362736 TTATAAGAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.53
14 8 0.47
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (14 bp):
ATATAATATACAAA
Found at i:87362765 original size:17 final size:17
Alignment explanation
Indices: 87362731--87362777 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
87362721 ATAATAACAA
* * *
87362731 AATATTTATAAGAGAAT
1 AATAATTATAAAAAAAT
87362748 AATAATTATAAAAAAAT
1 AATAATTATAAAAAAAT
87362765 ATATAA-TATAAAA
1 A-ATAATTATAAAA
87362778 GTAGGTAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
17 22 0.85
18 4 0.15
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32
Consensus pattern (17 bp):
AATAATTATAAAAAAAT
Found at i:87362885 original size:24 final size:25
Alignment explanation
Indices: 87362830--87362886 Score: 66
Period size: 24 Copynumber: 2.4 Consensus size: 25
87362820 CATTTTAAAA
87362830 TAAAATA-ATACATAATTAATAATT
1 TAAAATATATACATAATTAATAATT
* *
87362854 TAATATATATACATAA-T-ATGAGTT
1 TAAAATATATACATAATTAAT-AATT
87362878 TAAAATATA
1 TAAAATATA
87362887 ATTTAATTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
23 2 0.07
24 18 0.64
25 8 0.29
ACGTcount: A:0.54, C:0.04, G:0.04, T:0.39
Consensus pattern (25 bp):
TAAAATATATACATAATTAATAATT
Found at i:87362995 original size:25 final size:24
Alignment explanation
Indices: 87362949--87363000 Score: 59
Period size: 25 Copynumber: 2.1 Consensus size: 24
87362939 CATAACATAT
* *
87362949 ATAAAAAATAATAAGTAATATAGA
1 ATAAAAAATAATAAATAATATAAA
**
87362973 ATAAAAATATAATAAATGTTATAAA
1 ATAAAAA-ATAATAAATAATATAAA
87362998 ATA
1 ATA
87363001 TAATTTAAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
24 7 0.30
25 16 0.70
ACGTcount: A:0.65, C:0.00, G:0.06, T:0.29
Consensus pattern (24 bp):
ATAAAAAATAATAAATAATATAAA
Found at i:87363196 original size:20 final size:20
Alignment explanation
Indices: 87363139--87363227 Score: 58
Period size: 20 Copynumber: 4.3 Consensus size: 20
87363129 AAATAATTAG
*
87363139 AAAATAATAGATAATAT-GA-
1 AAAATAATA-TTAATATAGAT
* *
87363158 AGAATAATAATATATATA-AT
1 AAAATAATATTA-ATATAGAT
*
87363178 AAAATAATCTTAATAATAAGGAT
1 AAAATAATATTAAT-AT-A-GAT
* *
87363201 AAAAAAATATTAATATATAT
1 AAAATAATATTAATATAGAT
87363221 AAAATAA
1 AAAATAA
87363228 ATATATATAG
Statistics
Matches: 55, Mismatches: 8, Indels: 13
0.72 0.11 0.17
Matches are distributed among these distances:
18 3 0.05
19 15 0.27
20 19 0.35
21 2 0.04
22 2 0.04
23 14 0.25
ACGTcount: A:0.63, C:0.01, G:0.06, T:0.30
Consensus pattern (20 bp):
AAAATAATATTAATATAGAT
Found at i:87363241 original size:15 final size:15
Alignment explanation
Indices: 87363212--87363247 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
87363202 AAAAAATATT
87363212 AATATATATAAAATA
1 AATATATATAAAATA
*
87363227 AATATATATAGAATA
1 AATATATATAAAATA
87363242 AATATA
1 AATATA
87363248 GGACTAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (15 bp):
AATATATATAAAATA
Found at i:87367114 original size:17 final size:16
Alignment explanation
Indices: 87367087--87367134 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 16
87367077 ATGAAAATAT
87367087 CAAAAATAATAAAAGAA
1 CAAAAA-AATAAAAGAA
87367104 -ATAATAAAATAACAAGAA
1 CA-AA-AAAATAA-AAGAA
87367122 CAAAAAAATAAAA
1 CAAAAAAATAAAA
87367135 ATTAAATAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 9
0.75 0.00 0.25
Matches are distributed among these distances:
16 3 0.11
17 14 0.52
18 9 0.33
19 1 0.04
ACGTcount: A:0.77, C:0.06, G:0.04, T:0.12
Consensus pattern (16 bp):
CAAAAAAATAAAAGAA
Found at i:87368432 original size:17 final size:17
Alignment explanation
Indices: 87368410--87368449 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
87368400 ATAATATATA
* *
87368410 AAAATATCATATGGAGT
1 AAAATATAATATGGAAT
*
87368427 AAAATATAATATGTAAT
1 AAAATATAATATGGAAT
87368444 AAAATA
1 AAAATA
87368450 ATATGAAAAC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.57, C:0.03, G:0.10, T:0.30
Consensus pattern (17 bp):
AAAATATAATATGGAAT
Found at i:87368748 original size:18 final size:17
Alignment explanation
Indices: 87368727--87368773 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 17
87368717 AATTTTAATA
*
87368727 TAAAATAATAATATATAT
1 TAAAATAATAATA-AAAT
87368745 T-AAATAAATAATAAAAT
1 TAAAAT-AATAATAAAAT
87368762 TCAAAATAATAA
1 T-AAAATAATAA
87368774 ATTTATAAGT
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
17 8 0.32
18 13 0.52
19 4 0.16
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (17 bp):
TAAAATAATAATAAAAT
Found at i:87369857 original size:44 final size:44
Alignment explanation
Indices: 87369800--87370128 Score: 370
Period size: 44 Copynumber: 7.6 Consensus size: 44
87369790 CTCGACTTGT
* * * *
87369800 TCTCTGTCCATACAGAGACGCCAAGTCTGCTATCTTTGATCTGC
1 TCTCTGACAATACAGAGACGCCAAATCTGCTATCTTCGATCTGC
*
87369844 TCTCTGACAATACAGAGATGCCAAATCTGCT-TCTTCGATCTGC
1 TCTCTGACAATACAGAGACGCCAAATCTGCTATCTTCGATCTGC
*
87369887 TCTCTGACAATACAGAGACGCCAAATCTG-TTTCTTCGATCTGC
1 TCTCTGACAATACAGAGACGCCAAATCTGCTATCTTCGATCTGC
* * *
87369930 TCTCTGACAATACAAAGACGCCAAATCTGCT-TCTTGGATTTGC
1 TCTCTGACAATACAGAGACGCCAAATCTGCTATCTTCGATCTGC
* * *
87369973 TC-CTCGTCAAATAC-GAAGATGCCAAA--T-C-ATCTTAGATCTGC
1 TCTCT-GAC-AATACAG-AGACGCCAAATCTGCTATCTTCGATCTGC
* * *
87370014 TCTCTAACAATACAGAGATGGCAAATCTGCTATCTTCGATCTGC
1 TCTCTGACAATACAGAGACGCCAAATCTGCTATCTTCGATCTGC
* * * * *
87370058 TCTCCGACAATATAGAGACGCCAAATCTGTTATCTTTGATCTGT
1 TCTCTGACAATACAGAGACGCCAAATCTGCTATCTTCGATCTGC
* *
87370102 TCTCTGCCAATACAGAGACACCAAATC
1 TCTCTGACAATACAGAGACGCCAAATC
87370129 ATCTTAGATT
Statistics
Matches: 243, Mismatches: 30, Indels: 24
0.82 0.10 0.08
Matches are distributed among these distances:
40 14 0.06
41 15 0.06
42 7 0.03
43 94 0.39
44 113 0.47
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.29
Consensus pattern (44 bp):
TCTCTGACAATACAGAGACGCCAAATCTGCTATCTTCGATCTGC
Found at i:87370081 original size:84 final size:84
Alignment explanation
Indices: 87369829--87370128 Score: 336
Period size: 86 Copynumber: 3.5 Consensus size: 84
87369819 GCCAAGTCTG
* *
87369829 CTATCTTTGATCTGCTCTCTGACAATACAGAGATGCCAAATCTGCTTCTTCGATCTGCTCTCTGA
1 CTATCTTAGATCTGCTCTCTGACAATACAGAGATGCCAAATCTGCTTCTTCGATCTGCTCTCCGA
*
87369894 CAATACAGAGACGCCAAAT
66 CAATATAGAGACGCCAAAT
* * * * * *
87369913 CTGTTTCTTCGATCTGCTCTCTGACAATACAAAGACGCCAAATCTGCTTCTTGGATTTGCTC-CT
1 C--TATCTTAGATCTGCTCTCTGACAATACAGAGATGCCAAATCTGCTTCTTCGATCTGCTCTC-
* *
87369977 CGTCAA-ATACGAAGATGCCAAAT
63 CGACAATATA-G-AGACGCCAAAT
* *
87370000 C-ATCTTAGATCTGCTCTCTAACAATACAGAGATGGCAAATCTGCTATCTTCGATCTGCTCTCCG
1 CTATCTTAGATCTGCTCTCTGACAATACAGAGATGCCAAATCTGCT-TCTTCGATCTGCTCTCCG
87370064 ACAATATAGAGACGCCAAAT
65 ACAATATAGAGACGCCAAAT
* * * **
87370084 CTGTTATCTTTGATCTGTTCTCTGCCAATACAGAGACACCAAATC
1 C---TATCTTAGATCTGCTCTCTGACAATACAGAGATGCCAAATC
87370129 ATCTTAGATT
Statistics
Matches: 177, Mismatches: 27, Indels: 20
0.79 0.12 0.09
Matches are distributed among these distances:
84 50 0.28
85 21 0.12
86 62 0.35
87 11 0.06
88 33 0.19
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.30
Consensus pattern (84 bp):
CTATCTTAGATCTGCTCTCTGACAATACAGAGATGCCAAATCTGCTTCTTCGATCTGCTCTCCGA
CAATATAGAGACGCCAAAT
Found at i:87370114 original size:128 final size:127
Alignment explanation
Indices: 87369809--87370142 Score: 413
Period size: 128 Copynumber: 2.6 Consensus size: 127
87369799 TTCTCTGTCC
* *
87369809 ATACAGAGACGCCAAGTCTGCTATCTTTGATCTGCTCTCTGACAATACAGAGATGCCAAATCTGC
1 ATACAGAGACGCCAAATCTGCTATCTTTGATCTGCTCTCTGCCAATACAGAGATGCCAAA--T-C
* * * * *
87369874 TTCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGTTTCTTCGATCTGCTCTCTGACA
63 ATCTTAGATCTGCTCTCTAACAATACAGAGACGCCAAATCTGTATCTTCGATCTGCTCTCCGACA
* * * *
87369939 ATACAAAGACGCCAAATCTGCT-TCTTGGATTTGCTC-CTCGTCAAATAC-GAAGATGCCAAATC
1 ATACAGAGACGCCAAATCTGCTATCTTTGATCTGCTCTCT-G-CCAATACAG-AGATGCCAAATC
* *
87370001 ATCTTAGATCTGCTCTCTAACAATACAGAGATGGCAAATCTGCTATCTTCGATCTGCTCTCCGAC
63 ATCTTAGATCTGCTCTCTAACAATACAGAGACGCCAAATCTG-TATCTTCGATCTGCTCTCCGAC
87370066 A
127 A
* * * **
87370067 ATATAGAGACGCCAAATCTGTTATCTTTGATCTGTTCTCTGCCAATACAGAGACACCAAATCATC
1 ATACAGAGACGCCAAATCTGCTATCTTTGATCTGCTCTCTGCCAATACAGAGATGCCAAATCATC
*
87370132 TTAGATTTGCT
66 TTAGATCTGCT
87370143 TCAACGTAAA
Statistics
Matches: 174, Mismatches: 23, Indels: 16
0.82 0.11 0.08
Matches are distributed among these distances:
127 38 0.22
128 72 0.41
129 27 0.16
130 37 0.21
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (127 bp):
ATACAGAGACGCCAAATCTGCTATCTTTGATCTGCTCTCTGCCAATACAGAGATGCCAAATCATC
TTAGATCTGCTCTCTAACAATACAGAGACGCCAAATCTGTATCTTCGATCTGCTCTCCGACA
Found at i:87370222 original size:171 final size:169
Alignment explanation
Indices: 87370045--87370360 Score: 434
Period size: 169 Copynumber: 1.9 Consensus size: 169
87370035 CAAATCTGCT
* * * * * *
87370045 ATCTTCGATCTGCTCTCCGACAATATAGAGACGCCAAATCTGTTATCTTTGATCTGTTCTCTGCC
1 ATCTTCGATCTGCTCTCCAACAAAACAGAGACGCCAAATCTGTCATCTTTGATCTGCTCTCTGAC
* * *
87370110 AATACAGAGACACCAAATCATCTTAGATTTGCTTCAACGTAAACGCGTGAAAGCCAAATCTGCTA
66 -A-ACAGAGACACCAAATCATCTTAGATTTGCTTCAACATAAACACGTGAAAGCCAAATCAGCTA
*
87370175 TATCTTTGATCTGCTCCTCATAAACACAAGGATGCCAAATC
129 TATCTTCGATCTGCTCCTCATAAACACAAGGATGCCAAATC
* * ** * *
87370216 ATCTTCGATTTGTTCTTTAACAAAACAGAGATGCCAAATCTGTCATCTTTGATTTGCTCTCTGAC
1 ATCTTCGATCTGCTCTCCAACAAAACAGAGACGCCAAATCTGTCATCTTTGATCTGCTCTCTGAC
** * *
87370281 AACAGAGATGCCAAATCATCTTAGATTTGCTTCAACATAAACACGTGAAAGCTAAATCAGCTATG
66 AACAGAGACACCAAATCATCTTAGATTTGCTTCAACATAAACACGTGAAAGCCAAATCAGCTATA
87370346 TCTTCGATCTGCTCC
131 TCTTCGATCTGCTCC
87370361 CTGTCGAATA
Statistics
Matches: 125, Mismatches: 20, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
169 71 0.57
170 1 0.01
171 53 0.42
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.31
Consensus pattern (169 bp):
ATCTTCGATCTGCTCTCCAACAAAACAGAGACGCCAAATCTGTCATCTTTGATCTGCTCTCTGAC
AACAGAGACACCAAATCATCTTAGATTTGCTTCAACATAAACACGTGAAAGCCAAATCAGCTATA
TCTTCGATCTGCTCCTCATAAACACAAGGATGCCAAATC
Found at i:87370246 original size:215 final size:212
Alignment explanation
Indices: 87369811--87370297 Score: 524
Period size: 215 Copynumber: 2.3 Consensus size: 212
87369801 CTCTGTCCAT
* * *
87369811 ACAGAGACGCCAAGTCTGCTATCTTTGATCTGCTCTCTGACAATACAGAGATGCCAAATCTGCTT
1 ACAGAGATGCCAAATCTGCTATCTTTGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTT
* * * *
87369876 CTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGTTTCTTCGATCTGCTCTCTGACAAT
66 CTTCGATCTGCTCTCTGACAATACAGAGACACCAAATC--TATCTTAGATCTGCTCTCTAACAAT
* * * *
87369941 ACAAAGACGCCAAATCTGCTTCTTGGATTTGCTCCTCGTCAAATACGAAGATGCCAAATCATCTT
129 ACAAAGAAGCCAAATCTGCTTCTTGGATCTGCTCCTCATCAAACACGAAGATGCCAAATCATCTT
*
87370006 AGATCTGCTCTCTAACAAT
194 AGATCTGCTCTCTAACAAA
* * * * *
87370025 ACAGAGATGGCAAATCTGCTATCTTCGATCTGCTCTCCGACAATATAGAGACGCCAAATCTGTTA
1 ACAGAGATGCCAAATCTGCTATCTTTGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCT-
* * * *
87370090 TCTTTGATCTGTTCTCTGCCAATACAGAGACACCAAATC-ATCTTAGATTTGCT-TC-AACGTAA
65 TCTTCGATCTGCTCTCTGACAATACAGAGACACCAAATCTATCTTAGATCTGCTCTCTAAC--AA
*** *
87370152 -ACGCGTGAAAGCCAAATCTGCTATATCTTTGATCTGCTCCTCAT-AAACAC-AAGGATGCCAAA
128 TAC-AAAG-AAGCCAAATCTGC--T-TCTTGGATCTGCTCCTCATCAAACACGAA-GATGCCAAA
* * * *
87370214 TCATCTTCGATTTGTTCTTTAACAAA
187 TCATCTTAGATCTGCTCTCTAACAAA
* *
87370240 ACAGAGATGCCAAATCTG-TCATCTTTGATTTGCTCTCTGAC-A-ACAGAGATGCCAAATC
1 ACAGAGATGCCAAATCTGCT-ATCTTTGATCTGCTCTCTGACAATACAGAGACGCCAAATC
87370298 ATCTTAGATT
Statistics
Matches: 228, Mismatches: 35, Indels: 21
0.80 0.12 0.07
Matches are distributed among these distances:
210 2 0.01
211 4 0.02
212 14 0.06
213 26 0.11
214 60 0.26
215 106 0.46
216 16 0.07
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (212 bp):
ACAGAGATGCCAAATCTGCTATCTTTGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTT
CTTCGATCTGCTCTCTGACAATACAGAGACACCAAATCTATCTTAGATCTGCTCTCTAACAATAC
AAAGAAGCCAAATCTGCTTCTTGGATCTGCTCCTCATCAAACACGAAGATGCCAAATCATCTTAG
ATCTGCTCTCTAACAAA
Found at i:87370270 original size:44 final size:42
Alignment explanation
Indices: 87370214--87370297 Score: 114
Period size: 44 Copynumber: 2.0 Consensus size: 42
87370204 GGATGCCAAA
* *
87370214 TCATCTTCGATTTGTTCTTTAACAAAACAGAGATGCCAAATCTG
1 TCATCTTCGATTTGCTCTCTAAC--AACAGAGATGCCAAATCTG
* *
87370258 TCATCTTTGATTTGCTCTCTGACAACAGAGATGCCAAATC
1 TCATCTTCGATTTGCTCTCTAACAACAGAGATGCCAAATC
87370298 ATCTTAGATT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
42 17 0.47
44 19 0.53
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (42 bp):
TCATCTTCGATTTGCTCTCTAACAACAGAGATGCCAAATCTG
Found at i:87370433 original size:169 final size:168
Alignment explanation
Indices: 87370089--87370442 Score: 412
Period size: 169 Copynumber: 2.1 Consensus size: 168
87370079 CAAATCTGTT
* * *
87370089 ATCTTTGATCTGTTCTCTGCCAATACAGAGACACCAAATCATCTTAGATTTGCTTCAACGTAAAC
1 ATCTTTGATCTGCTCTCTGACAATACAGAGACACCAAATCATCTTAGATTTGCTTCAACATAAAC
* * * *
87370154 GCGTGAAAGCCAAATCTGCTATATCTTTGATCTGCTCCTCATAAACACAAGGATGCCAAATCATC
66 ACGTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCTCATAAACACAAGGATGCCAAACCATC
* *
87370219 TTCGATTTGTTCTTTAACAAAACAGAGATGCCAAATCTGTC
131 TTCAATTTGTTCTCTAACAAAACAGAGATGCCAAA--T-TC
* **
87370260 ATCTTTGATTTGCTCTCTGAC-A-ACAGAGATGCCAAATCATCTTAGATTTGCTTCAACATAAAC
1 ATCTTTGATCTGCTCTCTGACAATACAGAGACACCAAATCATCTTAGATTTGCTTCAACATAAAC
* * * * *
87370323 ACGTGAAAGCTAAATCAGCTATGTCTTCGATCTGCTCC-CTGTCGAATAC-AGAGATGCCAAACC
66 ACGTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCTC-AT-AAACACAAG-GATGCCAAACC
* *
87370386 TATTTCTTCAATTTGTTCTCTGACAATACAGAGATGCCAAA-TC
128 -A--TCTTCAATTTGTTCTCTAACAAAACAGAGATGCCAAATTC
*
87370429 ATCTTGGATCTGCT
1 ATCTTTGATCTGCT
87370443 TCAGTGTAAA
Statistics
Matches: 156, Mismatches: 21, Indels: 14
0.82 0.11 0.07
Matches are distributed among these distances:
168 1 0.01
169 88 0.56
170 15 0.10
171 19 0.12
173 33 0.21
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.31
Consensus pattern (168 bp):
ATCTTTGATCTGCTCTCTGACAATACAGAGACACCAAATCATCTTAGATTTGCTTCAACATAAAC
ACGTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCTCATAAACACAAGGATGCCAAACCATC
TTCAATTTGTTCTCTAACAAAACAGAGATGCCAAATTC
Found at i:87382607 original size:17 final size:17
Alignment explanation
Indices: 87382572--87382624 Score: 54
Period size: 17 Copynumber: 3.2 Consensus size: 17
87382562 GATAAAATGT
**
87382572 ATATAATATATAA-AAA
1 ATATAATATGGAATAAA
* *
87382588 ATATCATATGGAGTAAA
1 ATATAATATGGAATAAA
*
87382605 ATATAATATGTAATAAA
1 ATATAATATGGAATAAA
87382622 ATA
1 ATA
87382625 ATATGAAAAC
Statistics
Matches: 29, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
16 9 0.31
17 20 0.69
ACGTcount: A:0.58, C:0.02, G:0.08, T:0.32
Consensus pattern (17 bp):
ATATAATATGGAATAAA
Found at i:87384073 original size:17 final size:17
Alignment explanation
Indices: 87384051--87384083 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
87384041 GTATTCGGGC
87384051 TTGGGT-GTAACCGGGTT
1 TTGGGTAGTAA-CGGGTT
87384068 TTGGGTAGTAACGGGT
1 TTGGGTAGTAACGGGT
87384084 CTGTTGGGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.15, C:0.09, G:0.42, T:0.33
Consensus pattern (17 bp):
TTGGGTAGTAACGGGTT
Found at i:87384312 original size:4 final size:4
Alignment explanation
Indices: 87384305--87384329 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
87384295 ATAAAGAAGT
87384305 AATA AATA AATA AATA AATA AATA A
1 AATA AATA AATA AATA AATA AATA A
87384330 TAATAAAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AATA
Found at i:87384338 original size:23 final size:23
Alignment explanation
Indices: 87384287--87384340 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
87384277 ATTTTAAGCG
* *
87384287 TAAAAAAAATAAAGAAGTAATAA
1 TAAAATAAATAAAGAAATAATAA
*
87384310 -ATAAATAAATAAATAAATAATAA
1 TA-AAATAAATAAAGAAATAATAA
87384333 TAAAATAA
1 TAAAATAA
87384341 TTTGTAGAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
22 1 0.04
23 24 0.92
24 1 0.04
ACGTcount: A:0.74, C:0.00, G:0.04, T:0.22
Consensus pattern (23 bp):
TAAAATAAATAAAGAAATAATAA
Found at i:87395138 original size:2 final size:2
Alignment explanation
Indices: 87395131--87395165 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
87395121 ATGAAAATAC
87395131 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
87395166 AAGATCAATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:87409726 original size:14 final size:14
Alignment explanation
Indices: 87409707--87409734 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
87409697 TCCTTTAAGT
87409707 TTGAAAAAAAATTA
1 TTGAAAAAAAATTA
87409721 TTGAAAAAAAATTA
1 TTGAAAAAAAATTA
87409735 ATATCAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.64, C:0.00, G:0.07, T:0.29
Consensus pattern (14 bp):
TTGAAAAAAAATTA
Found at i:87409810 original size:48 final size:47
Alignment explanation
Indices: 87409760--87409849 Score: 119
Period size: 47 Copynumber: 1.9 Consensus size: 47
87409750 AGTTAGAAGA
87409760 AAAAAAAACAGTTTTTT-AAGTTCGAATAAAAAATTAATATCAATAAG
1 AAAAAAAACAGTTTTTTAAAGTTCGAAT-AAAAATTAATATCAATAAG
* *** *
87409807 AAAAACAATTTTTTTTTAAATTTCGAATAAAAATTAATATCAA
1 AAAAAAAACAGTTTTTTAAAGTTCGAATAAAAATTAATATCAA
87409850 AATTTGTAAG
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
47 28 0.76
48 9 0.24
ACGTcount: A:0.53, C:0.07, G:0.06, T:0.34
Consensus pattern (47 bp):
AAAAAAAACAGTTTTTTAAAGTTCGAATAAAAATTAATATCAATAAG
Found at i:87409881 original size:60 final size:59
Alignment explanation
Indices: 87409804--87410036 Score: 272
Period size: 60 Copynumber: 3.8 Consensus size: 59
87409794 TAATATCAAT
** *
87409804 AAGAAAAACAATTTTTTTTTAAATTTCGAAT-AAAAATTAATATCAAAATTTGTAAGTTAG
1 AAGAAAAACAA-AGTTTTTAAAATTT-GAATAAAAAATTAATATCAAAATTTGTAAGTTAG
* *
87409864 AAGAAAAACAAAGTTTTTAAAAGTTCGAATAAAAAATTAATATCAAAATTTGAAAGTTAG
1 AAGAAAAACAAAGTTTTTAAAA-TTTGAATAAAAAATTAATATCAAAATTTGTAAGTTAG
* * *
87409924 AAGAAAAATAATGTTTTTATAAAATTTGAATAAAAAAATTAATATCAAAATTTGTAAGTCA-
1 AAGAAAAACAAAG-TTTT-TAAAATTTGAAT-AAAAAATTAATATCAAAATTTGTAAGTTAG
* * * *
87409985 AAAAAAAGACAAAGTTTTTTAAAGTTTGAATAAAAAAATAATATTAAAATTT
1 AAGAAAA-ACAAAG-TTTTTAAAATTTGAATAAAAAATTAATATCAAAATTT
87410037 ATAACAGAAA
Statistics
Matches: 151, Mismatches: 16, Indels: 12
0.84 0.09 0.07
Matches are distributed among these distances:
59 12 0.08
60 71 0.47
61 27 0.18
62 41 0.27
ACGTcount: A:0.54, C:0.04, G:0.09, T:0.33
Consensus pattern (59 bp):
AAGAAAAACAAAGTTTTTAAAATTTGAATAAAAAATTAATATCAAAATTTGTAAGTTAG
Found at i:87410003 original size:122 final size:120
Alignment explanation
Indices: 87409804--87410036 Score: 335
Period size: 122 Copynumber: 1.9 Consensus size: 120
87409794 TAATATCAAT
* * * *
87409804 AAGAAAAACAATTTTTTTTTAAATTTCGAATAAAAATTAATATCAAAATTTGTAAGTTAGAAGAA
1 AAGAAAAACAATTTTTTATAAAATTTCGAATAAAAATTAATATCAAAATTTGTAAGTCAGAAAAA
*
87409869 AAACAAAGTTTTTAAAAGTTCGAATAAAAAATTAATATCAAAATTTGAAAGTTAG
66 AAACAAAGTTTTTAAAAGTTCGAATAAAAAAATAATATCAAAATTTGAAAGTTAG
*
87409924 AAGAAAAATAATGTTTTTATAAAATTT-GAATAAAAAAATTAATATCAAAATTTGTAAGTCA-AA
1 AAGAAAAACAAT-TTTTTATAAAATTTCGAAT--AAAAATTAATATCAAAATTTGTAAGTCAGAA
* * *
87409987 AAAAAGACAAAGTTTTTTAAAGTTTGAATAAAAAAATAATATTAAAATTT
63 AAAAA-ACAAAGTTTTTAAAAGTTCGAATAAAAAAATAATATCAAAATTT
87410037 ATAACAGAAA
Statistics
Matches: 100, Mismatches: 9, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
120 15 0.15
121 18 0.18
122 67 0.67
ACGTcount: A:0.54, C:0.04, G:0.09, T:0.33
Consensus pattern (120 bp):
AAGAAAAACAATTTTTTATAAAATTTCGAATAAAAATTAATATCAAAATTTGTAAGTCAGAAAAA
AAACAAAGTTTTTAAAAGTTCGAATAAAAAAATAATATCAAAATTTGAAAGTTAG
Found at i:87410297 original size:12 final size:12
Alignment explanation
Indices: 87410280--87410313 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
87410270 CCCATAAGGT
*
87410280 TTTTCTTTTTTC
1 TTTTCTTTCTTC
87410292 TTTTCTTTCTTC
1 TTTTCTTTCTTC
87410304 TTTCTCTTTC
1 TTT-TCTTTC
87410314 ATTAAACCCC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 14 0.70
13 6 0.30
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (12 bp):
TTTTCTTTCTTC
Found at i:87410302 original size:16 final size:17
Alignment explanation
Indices: 87410281--87410313 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
87410271 CCATAAGGTT
*
87410281 TTTCTTTTTTCT-TTTC
1 TTTCTTCTTTCTCTTTC
87410297 TTTCTTCTTTCTCTTTC
1 TTTCTTCTTTCTCTTTC
87410314 ATTAAACCCC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (17 bp):
TTTCTTCTTTCTCTTTC
Found at i:87417257 original size:20 final size:20
Alignment explanation
Indices: 87417232--87417270 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
87417222 AATCAACATG
87417232 TTAGTATTCTCTTAGGCCAT
1 TTAGTATTCTCTTAGGCCAT
87417252 TTAGTATTCTCTTAGGCCA
1 TTAGTATTCTCTTAGGCCA
87417271 AGATTGGCCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.21, C:0.21, G:0.15, T:0.44
Consensus pattern (20 bp):
TTAGTATTCTCTTAGGCCAT
Found at i:87423336 original size:33 final size:33
Alignment explanation
Indices: 87423292--87423357 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
87423282 AAACCCTCTG
87423292 GTTGTTACATGTAAATATCCTCCTCAAGTTCTC
1 GTTGTTACATGTAAATATCCTCCTCAAGTTCTC
*
87423325 GTTGTTGCATGTAAATATCCTCCTCAAGTTCTC
1 GTTGTTACATGTAAATATCCTCCTCAAGTTCTC
87423358 CATGCAAAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.23, C:0.24, G:0.14, T:0.39
Consensus pattern (33 bp):
GTTGTTACATGTAAATATCCTCCTCAAGTTCTC
Found at i:87429924 original size:17 final size:17
Alignment explanation
Indices: 87429866--87429924 Score: 54
Period size: 17 Copynumber: 3.5 Consensus size: 17
87429856 TAATAAATTT
87429866 AAAATATAA-TATATAA
1 AAAATATAATTATATAA
87429882 TAAAA-ATATATT-TAT-A
1 -AAAATATA-ATTATATAA
*
87429898 AGAATAATAATTATATAA
1 AAAAT-ATAATTATATAA
87429916 AAAATATAA
1 AAAATATAA
87429925 AATATATTGG
Statistics
Matches: 34, Mismatches: 2, Indels: 12
0.71 0.04 0.25
Matches are distributed among these distances:
15 3 0.09
16 7 0.21
17 18 0.53
18 6 0.18
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (17 bp):
AAAATATAATTATATAA
Found at i:87430460 original size:17 final size:17
Alignment explanation
Indices: 87430407--87430521 Score: 158
Period size: 17 Copynumber: 6.5 Consensus size: 17
87430397 AATCATATCT
87430407 TCTAAGATTGTATATCATA
1 TCTAAGATTG--TATCATA
**
87430426 TCTAAGATTCCAATCATA
1 TCTAAGATT-GTATCATA
87430444 TCTAAGATTGTATCATA
1 TCTAAGATTGTATCATA
87430461 TCTAAGATTGTATCATA
1 TCTAAGATTGTATCATA
*
87430478 TCTAAGATTGCAATCATA
1 TCTAAGATTG-TATCATA
*
87430496 TTTAAGATTGTATCATA
1 TCTAAGATTGTATCATA
87430513 TCTAAGATT
1 TCTAAGATT
87430522 ACATATCATT
Statistics
Matches: 86, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
17 47 0.55
18 30 0.35
19 9 0.10
ACGTcount: A:0.37, C:0.13, G:0.10, T:0.40
Consensus pattern (17 bp):
TCTAAGATTGTATCATA
Found at i:87430465 original size:35 final size:35
Alignment explanation
Indices: 87430407--87430530 Score: 162
Period size: 35 Copynumber: 3.5 Consensus size: 35
87430397 AATCATATCT
**
87430407 TCTAAGATTGTATATCATATCTAAGATTCCAATCATA
1 TCTAAGATTG-ATATCATATCTAAGATT-GTATCATA
87430444 TCTAAGATTG-TATCATATCTAAGATTGTATCATA
1 TCTAAGATTGATATCATATCTAAGATTGTATCATA
*
87430478 TCTAAGATTGCA-ATCATATTTAAGATTGTATCATA
1 TCTAAGATTG-ATATCATATCTAAGATTGTATCATA
*
87430513 TCTAAGATTACATATCAT
1 TCTAAGATT-GATATCAT
87430531 TGAAGATTAT
Statistics
Matches: 79, Mismatches: 4, Indels: 9
0.86 0.04 0.10
Matches are distributed among these distances:
34 16 0.20
35 48 0.61
36 5 0.06
37 10 0.13
ACGTcount: A:0.37, C:0.14, G:0.10, T:0.40
Consensus pattern (35 bp):
TCTAAGATTGATATCATATCTAAGATTGTATCATA
Found at i:87430486 original size:52 final size:53
Alignment explanation
Indices: 87430407--87430530 Score: 196
Period size: 52 Copynumber: 2.3 Consensus size: 53
87430397 AATCATATCT
87430407 TCTAAGATTGTATATCATATCTAAGATTCCAATCATATCTAAGATTGTATCATA
1 TCTAAGATTG-ATATCATATCTAAGATTCCAATCATATCTAAGATTGTATCATA
* *
87430461 TCTAAGATTG-TATCATATCTAAGATTGCAATCATATTTAAGATTGTATCATA
1 TCTAAGATTGATATCATATCTAAGATTCCAATCATATCTAAGATTGTATCATA
*
87430513 TCTAAGATTACATATCAT
1 TCTAAGATT-GATATCAT
87430531 TGAAGATTAT
Statistics
Matches: 65, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
52 49 0.75
54 16 0.25
ACGTcount: A:0.37, C:0.14, G:0.10, T:0.40
Consensus pattern (53 bp):
TCTAAGATTGATATCATATCTAAGATTCCAATCATATCTAAGATTGTATCATA
Found at i:87431133 original size:83 final size:83
Alignment explanation
Indices: 87430929--87431439 Score: 941
Period size: 83 Copynumber: 6.1 Consensus size: 83
87430919 GTAAGAATGT
* * * *
87430929 CAAATCATCTTGAGTCTGTTTGAGAACATTTGAGAATCATATCTGCAAGGTCCTCGACTTGTTCC
1 CAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCC
*
87430994 TTGTAAGCACAAGGTTGC
66 TTGTAAGCACAAGGATGC
* *
87431012 CTAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATGTCTGCAAGGTCCTCGATTTGTTC
1 C-AAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTC
87431077 CTTGTAAGCACAAGGATGC
65 CTTGTAAGCACAAGGATGC
87431096 CAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCC
1 CAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCC
87431161 TTGTAAGCACAAGGATGC
66 TTGTAAGCACAAGGATGC
87431179 CAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCC
1 CAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCC
*
87431244 TTATAAGCACAAGGATGC
66 TTGTAAGCACAAGGATGC
87431262 CAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCC
1 CAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCC
87431327 TTGTAAGCACAAGGATGC
66 TTGTAAGCACAAGGATGC
87431345 CAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCC
1 CAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCC
87431410 TTGTAAGCACAAGGATGC
66 TTGTAAGCACAAGGATGC
87431428 CAAACCATCTTG
1 CAAACCATCTTG
87431440 GATCTGCTTC
Statistics
Matches: 418, Mismatches: 9, Indels: 2
0.97 0.02 0.00
Matches are distributed among these distances:
83 340 0.81
84 78 0.19
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32
Consensus pattern (83 bp):
CAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCC
TTGTAAGCACAAGGATGC
Found at i:87431659 original size:83 final size:83
Alignment explanation
Indices: 87431482--87431802 Score: 526
Period size: 83 Copynumber: 3.9 Consensus size: 83
87431472 ATCTGCTATA
* * * * *
87431482 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTTGATTTGTT-CTTGT-AGCACAA--ATGC
1 TTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGC
*
87431543 CAAATCATCTTGA-TCTG
66 CAAACCATCTTGAGTCTG
*
87431560 TTTGAGAACATTTGAGAGTCATATCTGTAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGC
1 TTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGC
87431625 CAAACCATCTTGAGTCTG
66 CAAACCATCTTGAGTCTG
87431643 TTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGC
1 TTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGC
87431708 CAAACCATCTTGAGTCTG
66 CAAACCATCTTGAGTCTG
* *
87431726 TTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACACGGATGT
1 TTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGC
87431791 CAAACCATCTTG
66 CAAACCATCTTG
87431803 GATCTGCTTC
Statistics
Matches: 228, Mismatches: 10, Indels: 5
0.94 0.04 0.02
Matches are distributed among these distances:
78 39 0.17
79 5 0.02
80 7 0.03
82 16 0.07
83 161 0.71
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.34
Consensus pattern (83 bp):
TTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGC
CAAACCATCTTGAGTCTG
Found at i:87431703 original size:280 final size:284
Alignment explanation
Indices: 87431197--87431719 Score: 937
Period size: 280 Copynumber: 1.9 Consensus size: 284
87431187 CTTGAGTCTG
* *
87431197 TTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTATAAGCACAAGGATGC
1 TTTGAGAACATCTGAGAGTCAAATCTGCAATGTCCTCGATTTGTTCCTTATAAGCACAA-GATGC
87431262 CAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCC
65 CAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCC
87431327 TTGTAAGCACAAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCA
130 TTGTAAGCACAAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCA
87431392 ATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTGCTTCAGTATAA
195 ATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTGCTTCAGTATAA
87431457 ACATCTGAAAGTTAGATCTGCTATA
260 ACATCTGAAAGTTAGATCTGCTATA
* * * *
87431482 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTTGATTTGTT-CTTGT-AGCACAA-ATGCC
1 TTTGAGAACATCTGAGAGTCAAATCTGCAATGTCCTCGATTTGTTCCTTATAAGCACAAGATGCC
* *
87431544 AAATCATCTTGA-TCTGTTTGAGAACATTTGAGAGTCATATCTGTAATGTCCTCGATTTGTTCCT
66 AAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCT
87431608 TGTAAGCACAAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAA
131 TGTAAGCACAAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAA
87431673 TGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTG
196 TGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTG
87431720 AGTCTGTTTG
Statistics
Matches: 230, Mismatches: 8, Indels: 5
0.95 0.03 0.02
Matches are distributed among these distances:
280 163 0.71
281 16 0.07
283 7 0.03
284 4 0.02
285 40 0.17
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (284 bp):
TTTGAGAACATCTGAGAGTCAAATCTGCAATGTCCTCGATTTGTTCCTTATAAGCACAAGATGCC
AAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCT
TGTAAGCACAAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAA
TGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTGCTTCAGTATAAA
CATCTGAAAGTTAGATCTGCTATA
Found at i:87431858 original size:363 final size:364
Alignment explanation
Indices: 87431114--87431927 Score: 1423
Period size: 363 Copynumber: 2.2 Consensus size: 364
87431104 CTTGAGTCTG
* * * *
87431114 TTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTT-CTTGTAAGCACAA--ATGC
*
87431179 CAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCC
63 CAAATCATCTTGA-TCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCC
87431244 TTATAAGCACAAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCA
127 TTATAAGCACAAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCA
87431309 ATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACAT
192 ATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACAT
87431374 TTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
257 TTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
87431439 GGATCTGCTTCAGTATAAACATCTGAAAGTTAGATCTGCTATA
322 GGATCTGCTTCAGTATAAACATCTGAAAGTTAGATCTGCTATA
*
87431482 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTTGATTTGTTCTTGT-AGCACAAATGCCAA
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCTTGTAAGCACAAATGCCAA
* *
87431546 ATCATCTTGATCTGTTTGAGAACATTTGAGAGTCATATCTGTAATGTCCTCGATTTGTTCCTTGT
66 ATCATCTTGATCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTAT
87431611 AAGCACAAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGT
131 AAGCACAAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGT
87431676 CCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGA
196 CCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGA
* *
87431741 GAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACACGGATGTCAAACCATCTTGGAT
261 GAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGAT
* *
87431806 CTGCTTCATTATAAACATCTGAAGGTTAGATCTGCTATA
326 CTGCTTCAGTATAAACATCTGAAAGTTAGATCTGCTATA
* *
87431845 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATAC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTG-TTCTTGTAAGCAC-A-AATGC
87431910 CAAATCATCTTGGATCTG
63 CAAATCATCTT-GATCTG
87431928 CTTCAGTATA
Statistics
Matches: 426, Mismatches: 15, Indels: 10
0.94 0.03 0.02
Matches are distributed among these distances:
363 325 0.76
364 23 0.05
365 4 0.01
366 8 0.02
367 20 0.05
368 46 0.11
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.33
Consensus pattern (364 bp):
TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCTTGTAAGCACAAATGCCAA
ATCATCTTGATCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTAT
AAGCACAAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGT
CCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGA
GAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGAT
CTGCTTCAGTATAAACATCTGAAAGTTAGATCTGCTATA
Found at i:87431938 original size:119 final size:119
Alignment explanation
Indices: 87431726--87432306 Score: 909
Period size: 119 Copynumber: 5.0 Consensus size: 119
87431716 CTTGAGTCTG
* * * * * * * *
87431726 TTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACACGGATGT
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
* *
87431791 CAAACCATCTTGGATCTGCTTCATTATAAACATCTGAAGGTTAGATCTGCTATA
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
* *
87431845 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATAC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
* *
87431910 CAAATCATCTTGGATCTGCTTCAGTATAAACATTTGAAGGTTAGATCTGTTATA
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
* *
87431964 TTTGAGAACGTCTGAGAGTCAAATCTACTATGTCCTCGATTT-TTCCTTGTAAACACAAGAATAC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
87432028 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
87432082 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
*
87432147 CAAATCATCTTGGA------TC----T--ACATCTGAAGGTTAGATCTGCTATC
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
*
87432189 TTTGAGAACGTCTGAGAGTCAAATCTACTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
87432254 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTAT
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTAT
87432307 CTTCGATCTG
Statistics
Matches: 427, Mismatches: 22, Indels: 26
0.90 0.05 0.05
Matches are distributed among these distances:
107 102 0.24
109 1 0.00
113 4 0.01
117 1 0.00
118 114 0.27
119 205 0.48
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34
Consensus pattern (119 bp):
TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
Found at i:87432243 original size:107 final size:107
Alignment explanation
Indices: 87432057--87432270 Score: 410
Period size: 107 Copynumber: 2.0 Consensus size: 107
87432047 TTCAGTATAA
*
87432057 ACATCTGAAGGTTAGATCTGCTATATTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGAT
1 ACATCTGAAGGTTAGATCTGCTATATTTGAGAACGTCTGAGAGTCAAATCTACTATGTCCTCGAT
87432122 TTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCT
66 TTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCT
*
87432164 ACATCTGAAGGTTAGATCTGCTATCTTTGAGAACGTCTGAGAGTCAAATCTACTATGTCCTCGAT
1 ACATCTGAAGGTTAGATCTGCTATATTTGAGAACGTCTGAGAGTCAAATCTACTATGTCCTCGAT
87432229 TTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCT
66 TTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCT
87432271 GCTTCAGTAT
Statistics
Matches: 105, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
107 105 1.00
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (107 bp):
ACATCTGAAGGTTAGATCTGCTATATTTGAGAACGTCTGAGAGTCAAATCTACTATGTCCTCGAT
TTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCT
Found at i:87432381 original size:44 final size:44
Alignment explanation
Indices: 87432298--87432476 Score: 186
Period size: 44 Copynumber: 4.1 Consensus size: 44
87432288 TGAAGGTTAG
*
87432298 ATCTGCTATCTTCGATCTGTT-CCTATAAACACAGGGATGCCAA
1 ATCTGCTATCTTCAATCTGTTCCCTATAAACACAGGGATGCCAA
87432341 ATCTGCTATCTTCAA-CTTGTTCCCTATAAACACAGGGATGCC--
1 ATCTGCTATCTTCAATC-TGTTCCCTATAAACACAGGGATGCCAA
** * * * * * *
87432383 ATGCTGAAATCTTCAATCTGCTTCGCTGTAAGCACAGGAATGTCAG
1 AT-CTGCTATCTTCAATCTG-TTCCCTATAAACACAGGGATGCCAA
* ** *
87432429 ATCTACTATCTTTGATCTGTTCCCTATAAACATAGGGATGCCAA
1 ATCTGCTATCTTCAATCTGTTCCCTATAAACACAGGGATGCCAA
87432473 ATCT
1 ATCT
87432477 TGTTTCTTTG
Statistics
Matches: 109, Mismatches: 20, Indels: 13
0.77 0.14 0.09
Matches are distributed among these distances:
42 3 0.03
43 31 0.28
44 61 0.56
45 12 0.11
46 2 0.02
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31
Consensus pattern (44 bp):
ATCTGCTATCTTCAATCTGTTCCCTATAAACACAGGGATGCCAA
Found at i:87432420 original size:88 final size:86
Alignment explanation
Indices: 87432305--87432471 Score: 210
Period size: 88 Copynumber: 1.9 Consensus size: 86
87432295 TAGATCTGCT
* * *
87432305 ATCTTCGATCTGTTCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAA-CTTGTTCCCTATA
1 ATCTTCAATCTGTTCCTATAAACACAGGAATGCCAAATCTACTATCTTCAATC-TGTTCCCTATA
87432369 AACACAGGGATGCCATGCTGAA
65 AACACAGGGATGCCATGCTGAA
* * * * **
87432391 ATCTTCAATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTACTATCTTTGATCTGTTCCCTAT
1 ATCTTCAATCTG-TTC-CTATAAACACAGGAATGCCAAATCTACTATCTTCAATCTGTTCCCTAT
*
87432456 AAACATAGGGATGCCA
64 AAACACAGGGATGCCA
87432472 AATCTTGTTT
Statistics
Matches: 68, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
86 11 0.16
87 3 0.04
88 53 0.78
89 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.31
Consensus pattern (86 bp):
ATCTTCAATCTGTTCCTATAAACACAGGAATGCCAAATCTACTATCTTCAATCTGTTCCCTATAA
ACACAGGGATGCCATGCTGAA
Found at i:87433360 original size:20 final size:22
Alignment explanation
Indices: 87433337--87433380 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 22
87433327 TCACCTTGGC
87433337 CTCTCCA-TTTTTTCT-TTTTT
1 CTCTCCATTTTTTTCTCTTTTT
**
87433357 CTCTTTATTTTTTTCTCTTTTT
1 CTCTCCATTTTTTTCTCTTTTT
87433379 CT
1 CT
87433381 TTTCTTTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 5 0.25
21 8 0.40
22 7 0.35
ACGTcount: A:0.05, C:0.23, G:0.00, T:0.73
Consensus pattern (22 bp):
CTCTCCATTTTTTTCTCTTTTT
Done.