Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 29 of 318
Found at i:7868986 original size:27 final size:27
Alignment explanation
Indices: 7868850--7868987 Score: 90
Period size: 27 Copynumber: 5.2 Consensus size: 27
7868840 CTCTCCTCTC
* *
7868850 TCTCTCCCTTTC-CTTCTCCTTCTCCCTT
1 TCTCT-CCTTTCTCTT-TCCCTATCCCTT
* * * * *
7868878 TCTCTCCTCTCTCTCTCCTTTTCCCTC
1 TCTCTCCTTTCTCTTTCCCTATCCCTT
* * * *
7868905 TCTCTCC--TCTCCTTCTCTCTCTC-T
1 TCTCTCCTTTCTCTTTCCCTATCCCTT
*
7868929 T-TCT-CTTTCTCTTTCTCCTTATCCCTA
1 TCTCTCCTTTCTCTTTC-CC-TATCCCTT
7868956 TCTCTCCTTTCTCTTTCCCTATCCCTT
1 TCTCTCCTTTCTCTTTCCCTATCCCTT
7868983 TCTCT
1 TCTCT
7868988 ATCTTTTTCC
Statistics
Matches: 85, Mismatches: 17, Indels: 17
0.71 0.14 0.14
Matches are distributed among these distances:
22 1 0.01
23 3 0.04
24 8 0.09
25 11 0.13
26 4 0.05
27 35 0.41
28 12 0.14
29 11 0.13
ACGTcount: A:0.02, C:0.46, G:0.00, T:0.51
Consensus pattern (27 bp):
TCTCTCCTTTCTCTTTCCCTATCCCTT
Found at i:7868989 original size:12 final size:12
Alignment explanation
Indices: 7868912--7868996 Score: 53
Period size: 12 Copynumber: 6.7 Consensus size: 12
7868902 CTCTCTCTCC
* *
7868912 TCTCCTTCTCTC
1 TCTCTTTCTCTA
*
7868924 TCTCTTTCTCTT
1 TCTCTTTCTCTA
7868936 TCTCTTTCTCCTTA
1 TCTCTTTCT-C-TA
* *
7868950 TCCCTATCTCTCCTT
1 TCTCT-T-TCT-CTA
*
7868965 TCTCTTTCCCTA
1 TCTCTTTCTCTA
*
7868977 TCCCTTTCTCTA
1 TCTCTTTCTCTA
*
7868989 TCTTTTTC
1 TCTCTTTC
7868997 CTTTTCCCTT
Statistics
Matches: 57, Mismatches: 12, Indels: 8
0.74 0.16 0.10
Matches are distributed among these distances:
12 37 0.65
13 3 0.05
14 6 0.11
15 6 0.11
16 5 0.09
ACGTcount: A:0.05, C:0.40, G:0.00, T:0.55
Consensus pattern (12 bp):
TCTCTTTCTCTA
Found at i:7875693 original size:22 final size:22
Alignment explanation
Indices: 7875668--7875714 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
7875658 TTTCAGTTCC
7875668 TTATCTATTTGAACTCAGGCTT
1 TTATCTATTTGAACTCAGGCTT
7875690 TTATCTATTTGAACTCAGGCTT
1 TTATCTATTTGAACTCAGGCTT
7875712 TTA
1 TTA
7875715 CTTACATCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.23, C:0.17, G:0.13, T:0.47
Consensus pattern (22 bp):
TTATCTATTTGAACTCAGGCTT
Found at i:7876021 original size:15 final size:15
Alignment explanation
Indices: 7876001--7876030 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
7875991 ATTATGAAAG
7876001 ATATGTTTTGGATTA
1 ATATGTTTTGGATTA
*
7876016 ATATGTTTTGTATTA
1 ATATGTTTTGGATTA
7876031 GAATTTTTGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.27, C:0.00, G:0.17, T:0.57
Consensus pattern (15 bp):
ATATGTTTTGGATTA
Found at i:7876651 original size:41 final size:43
Alignment explanation
Indices: 7876592--7876717 Score: 157
Period size: 41 Copynumber: 3.0 Consensus size: 43
7876582 TAGGATTTCT
* *
7876592 GATATGTGATTACATGTAAAACCATGTCTGGGACATTGGCATC
1 GATATGTGATTGCATGTAAGACCATGTCTGGGACATTGGCATC
* * * *
7876635 G-TATTTGATT-CGTGTAAGACCCTGTCTGGGACAATGGCATC
1 GATATGTGATTGCATGTAAGACCATGTCTGGGACATTGGCATC
* * *
7876676 GATATGTGATTGCATGTAAGACCACGTTTGGGACTTTGGCAT
1 GATATGTGATTGCATGTAAGACCATGTCTGGGACATTGGCAT
7876718 TGTACGATAT
Statistics
Matches: 69, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
41 28 0.41
42 16 0.23
43 25 0.36
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (43 bp):
GATATGTGATTGCATGTAAGACCATGTCTGGGACATTGGCATC
Found at i:7877562 original size:13 final size:13
Alignment explanation
Indices: 7877544--7877569 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7877534 TATATGTGAA
7877544 CTTTGTTAATGTG
1 CTTTGTTAATGTG
7877557 CTTTGTTAATGTG
1 CTTTGTTAATGTG
7877570 TTATTATGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.08, G:0.23, T:0.54
Consensus pattern (13 bp):
CTTTGTTAATGTG
Found at i:7890212 original size:30 final size:30
Alignment explanation
Indices: 7890178--7890237 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
7890168 TATTTTATTA
7890178 TTAATTTTGTTATAATTTTAGAGGCATTTG
1 TTAATTTTGTTATAATTTTAGAGGCATTTG
* *
7890208 TTAATTTTGTTATTATTTTAGAGGTATTTG
1 TTAATTTTGTTATAATTTTAGAGGCATTTG
7890238 CTTGTTAAGT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.25, C:0.02, G:0.17, T:0.57
Consensus pattern (30 bp):
TTAATTTTGTTATAATTTTAGAGGCATTTG
Found at i:7893478 original size:29 final size:31
Alignment explanation
Indices: 7893405--7893487 Score: 89
Period size: 31 Copynumber: 2.7 Consensus size: 31
7893395 TCATAATTAC
* * *
7893405 AAAAGTATAGGGACTAAAAGTGAGCAATTTG
1 AAAAGTATAAGGACTAAAATTGAGCAATATG
* * *
7893436 AAAAGTACATGGACTAAAATTGATCAA-AT-
1 AAAAGTATAAGGACTAAAATTGAGCAATATG
*
7893465 AAAAGTATAAGGACTAAATTTGA
1 AAAAGTATAAGGACTAAAATTGA
7893488 AACTTTTACA
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
29 20 0.45
30 1 0.02
31 23 0.52
ACGTcount: A:0.49, C:0.07, G:0.19, T:0.24
Consensus pattern (31 bp):
AAAAGTATAAGGACTAAAATTGAGCAATATG
Found at i:7894100 original size:23 final size:21
Alignment explanation
Indices: 7894074--7894122 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 21
7894064 ATTTAACCAA
7894074 AAAAAGAAAAGAA-AAGAAAGTTT
1 AAAAA-AAAAGAAGAAGAAA--TT
*
7894097 AAAAAAGAAGAAGAAGAAATT
1 AAAAAAAAAGAAGAAGAAATT
7894118 AAAAA
1 AAAAA
7894123 TTAATTTATT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
21 7 0.29
22 6 0.25
23 11 0.46
ACGTcount: A:0.73, C:0.00, G:0.16, T:0.10
Consensus pattern (21 bp):
AAAAAAAAAGAAGAAGAAATT
Found at i:7896718 original size:5 final size:6
Alignment explanation
Indices: 7896703--7896727 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
7896693 ATAAGTCTTG
7896703 TTTTTA TTTTTA TTTTTA TTTTTA T
1 TTTTTA TTTTTA TTTTTA TTTTTA T
7896728 GTTGAACTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTTTA
Found at i:7901024 original size:18 final size:18
Alignment explanation
Indices: 7901001--7901283 Score: 115
Period size: 18 Copynumber: 15.3 Consensus size: 18
7900991 GAACAATTAT
7901001 TTATTCAGTAATAGTCAG
1 TTATTCAGTAATAGTCAG
* * * *
7901019 TTATTCGGTAACAATCAA
1 TTATTCAGTAATAGTCAG
* **
7901037 TTATTCAATAATAACCAG
1 TTATTCAGTAATAGTCAG
*
7901055 TTATTCAGTATCGATCAATTGATCGG
1 TTATTCAGTA---AT--A--G-TCAG
* * *
7901081 TTATCCAGTAACAGTCAA
1 TTATTCAGTAATAGTCAG
* *
7901099 TTATTAAGTAA-AATCAG
1 TTATTCAGTAATAGTCAG
* * * *
7901116 ATATTCAGTAACAATTAAG
1 TTATTCAGTAA-TAGTCAG
*
7901135 TTATTCAGTAACAGTCA-
1 TTATTCAGTAATAGTCAG
** * * *
7901152 TTCATTCAGCGACAATCAA
1 TT-ATTCAGTAATAGTCAG
* *
7901171 TTATTCGGTAAT-GATCAA
1 TTATTCAGTAATAG-TCAG
*
7901189 TTATTCAGTAATATTCAG
1 TTATTCAGTAATAGTCAG
*
7901207 TTATTCAGTAACAGTCTA-
1 TTATTCAGTAATAGTC-AG
* * *
7901225 ATATCCAGTAATAGTCAA
1 TTATTCAGTAATAGTCAG
* * * *
7901243 TTATCCGGTAACAGTCAA
1 TTATTCAGTAATAGTCAG
*
7901261 TTATTCAGTAATAATCAG
1 TTATTCAGTAATAGTCAG
7901279 TTATT
1 TTATT
7901284 TTATACTTTT
Statistics
Matches: 196, Mismatches: 53, Indels: 32
0.70 0.19 0.11
Matches are distributed among these distances:
17 16 0.08
18 146 0.74
19 18 0.09
21 3 0.02
23 2 0.01
26 11 0.06
ACGTcount: A:0.37, C:0.15, G:0.12, T:0.35
Consensus pattern (18 bp):
TTATTCAGTAATAGTCAG
Found at i:7901041 original size:36 final size:36
Alignment explanation
Indices: 7900988--7901217 Score: 135
Period size: 36 Copynumber: 6.7 Consensus size: 36
7900978 TCATTAACAC
* * *
7900988 TCAG-AACAATTATTTATTCAGTAATAGTCAGTTAT
1 TCAGTAACAATCAATTATTCAGTAATAATCAGTTAT
* * *
7901023 TCGGTAACAATCAATTATTCAATAATAACCAGTTAT
1 TCAGTAACAATCAATTATTCAGTAATAATCAGTTAT
* * *
7901059 TCAGTATCGATC-A--ATT--G-----ATCGGTTAT
1 TCAGTAACAATCAATTATTCAGTAATAATCAGTTAT
* * * *
7901085 CCAGTAACAGTCAATTATTAAGTAA-AATCAGATAT
1 TCAGTAACAATCAATTATTCAGTAATAATCAGTTAT
* * *
7901120 TCAGTAACAATTAAGTTATTCAGTAACAGTCA-TTCAT
1 TCAGTAACAATCAA-TTATTCAGTAATAATCAGTT-AT
** * * *
7901157 TCAGCGACAATCAATTATTCGGTAATGATCAATTAT
1 TCAGTAACAATCAATTATTCAGTAATAATCAGTTAT
* * *
7901193 TCAGTAATATTCAGTTATTCAGTAA
1 TCAGTAACAATCAATTATTCAGTAA
7901218 CAGTCTAATA
Statistics
Matches: 144, Mismatches: 37, Indels: 27
0.69 0.18 0.13
Matches are distributed among these distances:
26 15 0.10
27 1 0.01
29 3 0.02
31 1 0.01
33 3 0.02
35 22 0.15
36 80 0.56
37 19 0.13
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (36 bp):
TCAGTAACAATCAATTATTCAGTAATAATCAGTTAT
Found at i:7901212 original size:72 final size:72
Alignment explanation
Indices: 7901117--7901283 Score: 194
Period size: 72 Copynumber: 2.3 Consensus size: 72
7901107 TAAAATCAGA
* * * * * *
7901117 TATTCAGTAACAATTAAGTTATTCAGTAACAGTC-ATTCATTCAGCGACAATCAATTATTCGGTA
1 TATTCAGTAA-TATTCAGTTATTCAGTAACAGTCTAAT-ATCCAGCAACAATCAATTATCCGGTA
*
7901181 A-TGATCAAT
64 ACAG-TCAAT
* * *
7901190 TATTCAGTAATATTCAGTTATTCAGTAACAGTCTAATATCCAGTAATAGTCAATTATCCGGTAAC
1 TATTCAGTAATATTCAGTTATTCAGTAACAGTCTAATATCCAGCAACAATCAATTATCCGGTAAC
7901255 AGTCAAT
66 AGTCAAT
*
7901262 TATTCAGTAATAATCAGTTATT
1 TATTCAGTAATATTCAGTTATT
7901284 TTATACTTTT
Statistics
Matches: 81, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
72 68 0.84
73 13 0.16
ACGTcount: A:0.37, C:0.16, G:0.12, T:0.36
Consensus pattern (72 bp):
TATTCAGTAATATTCAGTTATTCAGTAACAGTCTAATATCCAGCAACAATCAATTATCCGGTAAC
AGTCAAT
Found at i:7901234 original size:36 final size:36
Alignment explanation
Indices: 7901081--7901283 Score: 128
Period size: 36 Copynumber: 5.6 Consensus size: 36
7901071 AATTGATCGG
* * * * *
7901081 TTATCCAGTAACAGTCAATTATTAAGTAA-AATCAGA
1 TTATCCAGTAATAATCAGTTATTCAGTAACAGTCA-A
* * *
7901117 -TATTCAGTAACAATTAAGTTATTCAGTAACAGTC-A
1 TTATCCAGTAATAA-TCAGTTATTCAGTAACAGTCAA
* ** * * * *
7901152 TTCATTCAGCGACAATCAATTATTCGGTAA-TGATCAA
1 TT-ATCCAGTAATAATCAGTTATTCAGTAACAG-TCAA
* *
7901189 TTATTCAGTAATATTCAGTTATTCAGTAACAGTCTAA
1 TTATCCAGTAATAATCAGTTATTCAGTAACAGTC-AA
* * * *
7901226 -TATCCAGTAATAGTCAATTATCCGGTAACAGTCAA
1 TTATCCAGTAATAATCAGTTATTCAGTAACAGTCAA
*
7901261 TTATTCAGTAATAATCAGTTATT
1 TTATCCAGTAATAATCAGTTATT
7901284 TTATACTTTT
Statistics
Matches: 130, Mismatches: 28, Indels: 18
0.74 0.16 0.10
Matches are distributed among these distances:
35 15 0.12
36 96 0.74
37 19 0.15
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (36 bp):
TTATCCAGTAATAATCAGTTATTCAGTAACAGTCAA
Found at i:7901551 original size:51 final size:45
Alignment explanation
Indices: 7901447--7901555 Score: 146
Period size: 45 Copynumber: 2.4 Consensus size: 45
7901437 ACAAATCCGG
* * **
7901447 AACAGTAACAGTAACAATATTCAACACACAAAGTGTTAAATCGAT
1 AACAGTAACAGTAACAGTATTCGACACACAAAGTGCCAAATCGAT
* * *
7901492 AACGGTAACAGTAACAGTATTCGACACACAAAGTGCCGAATCGGT
1 AACAGTAACAGTAACAGTATTCGACACACAAAGTGCCAAATCGAT
*
7901537 AAAAGTAACAGTAACAGTA
1 AACAGTAACAGTAACAGTA
7901556 GCAGTAGTCG
Statistics
Matches: 55, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 55 1.00
ACGTcount: A:0.46, C:0.18, G:0.17, T:0.19
Consensus pattern (45 bp):
AACAGTAACAGTAACAGTATTCGACACACAAAGTGCCAAATCGAT
Found at i:7902276 original size:72 final size:72
Alignment explanation
Indices: 7902156--7902301 Score: 265
Period size: 72 Copynumber: 2.0 Consensus size: 72
7902146 AAATACGAAC
* * *
7902156 CTTAATTTCCGAGCTAACTCCCGTTGATTTTGTCTTGTCCTTTTTTAGCCGAGATTTCTGGTATC
1 CTTAATTTCCGAGCTAACTCCCGTTGACTTTGTCTTGTCCTTTCTTAGCCGAGATTTCCGGTATC
7902221 ACATTGA
66 ACATTGA
7902228 CTTAATTTCCGAGCTAACTCCCGTTGACTTTGTCTTGTCCTTTCTTAGCCGAGATTTCCGGTATC
1 CTTAATTTCCGAGCTAACTCCCGTTGACTTTGTCTTGTCCTTTCTTAGCCGAGATTTCCGGTATC
7902293 ACATTGA
66 ACATTGA
7902300 CT
1 CT
7902302 ATTTAAGCTT
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
72 71 1.00
ACGTcount: A:0.18, C:0.25, G:0.16, T:0.41
Consensus pattern (72 bp):
CTTAATTTCCGAGCTAACTCCCGTTGACTTTGTCTTGTCCTTTCTTAGCCGAGATTTCCGGTATC
ACATTGA
Found at i:7902356 original size:18 final size:18
Alignment explanation
Indices: 7902330--7902364 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
7902320 AAACCCCCAA
7902330 TTTTCCCTTTTTTTTTTT
1 TTTTCCCTTTTTTTTTTT
*
7902348 TTTTTCCTTTTTTTTTT
1 TTTTCCCTTTTTTTTTT
7902365 CCTTCTTTCC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (18 bp):
TTTTCCCTTTTTTTTTTT
Found at i:7902365 original size:12 final size:12
Alignment explanation
Indices: 7902343--7902368 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
7902333 TCCCTTTTTT
7902343 TTTTTTTTTTCC
1 TTTTTTTTTTCC
7902355 TTTTTTTTTTCC
1 TTTTTTTTTTCC
7902367 TT
1 TT
7902369 CTTTCCTTCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (12 bp):
TTTTTTTTTTCC
Found at i:7902373 original size:20 final size:18
Alignment explanation
Indices: 7902335--7902376 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 18
7902325 CCCAATTTTC
*
7902335 CCTTTTTTTTTTTTTTTT
1 CCTTTTTTTTTTTTCTTT
7902353 CCTTTTTTTTTTCCTTCTTT
1 CCTTTTTTTTTT--TTCTTT
7902373 CCTT
1 CCTT
7902377 CCCTTATTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 12 0.57
20 9 0.43
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (18 bp):
CCTTTTTTTTTTTTCTTT
Found at i:7908570 original size:287 final size:278
Alignment explanation
Indices: 7907863--7908552 Score: 1071
Period size: 277 Copynumber: 2.5 Consensus size: 278
7907853 ATAAAAGTCG
*
7907863 ATGATGATAAGTTGTAAGGCTTGTTTCTCAAAACATTCGCAGTGGCCGTCTAAGAGCTTTCGCCT
1 ATGATGATAAGTTGTAAGGCTTGTTTCTCAAAACATTCGCAGTGGCCGCCTAAGAGCTTTCGCCT
7907928 TTCGCCGGGCTTGAGAGCTTGTGCTGCTTCATTCCTTCCTTGGATGTCTGAGACCTTTTATGACT
66 TTCGCCGGGCTTGAGAGCTTGTGCTGCTTCATTCCTTCCTTGGATGTCTGAGACCTTTTATGACT
* * * * *** *
7907993 TCTATATGATTGTTGTTTTCATTATTTGTGCTTGAAAATTCAGTTATTTTTTCAGAAATTTGGTT
131 TCTATATAATTGTTGTTTTCATTATTTGTGCTTGAAAATCCAATTACTTCCACAGAAATCTGGTT
7908058 CCATATTTTTTTTATCAGTTCAATTGATAAACGATATTCTTAAAATTCAGTCAAAGGAAAATATA
196 CCATATTTTTTTTATCAGTTCAATTGATAAACGATATTCTTAAAATTCAGTCAAAGGAAAATATA
7908123 TTTCTTGTGTATGGGTTT
261 TTTCTTGTGTATGGGTTT
*** *
7908141 ATGATGATAA-TCCAAAGGCTTGTTTCTCAAAACATTCGCAGTGGCCGCCTAAGAGCTTTCGCTT
1 ATGATGATAAGTTGTAAGGCTTGTTTCTCAAAACATTCGCAGTGGCCGCCTAAGAGCTTTCGCCT
*
7908205 TTCGCCGGGCTTGAGAGCTTGTGCTGCTTCATTCCTTCCTTGGATGTCTGAGACCTTCTATGACT
66 TTCGCCGGGCTTGAGAGCTTGTGCTGCTTCATTCCTTCCTTGGATGTCTGAGACCTTTTATGACT
*
7908270 TGTATATAATTGTTGGTTTTCATTATTTGTGCTTGAAAATCCAATTACTTCCACAGAAATCTGGT
131 TCTATATAATTGTT-GTTTTCATTATTTGTGCTTGAAAATCCAATTACTTCCACAGAAATCTGGT
** **
7908335 TGTATATTTTTTCCTTTTTTTTATCAGTTCAATTGATAAACGATATTCTTAAAATTGTGTCAAAG
195 TCCATA--------TTTTTTTTATCAGTTCAATTGATAAACGATATTCTTAAAATTCAGTCAAAG
*
7908400 GATAATATATTTCATT-TGTATGGGTTT
252 GAAAATATATTTC-TTGTGTATGGGTTT
7908427 ATGATGATAAGTTGTAAGGCTTGTTTCTCAAAACATTCGCAGTGGCCGCCTAAGAGCTTTCGCCT
1 ATGATGATAAGTTGTAAGGCTTGTTTCTCAAAACATTCGCAGTGGCCGCCTAAGAGCTTTCGCCT
*
7908492 TTCGCCGGGCTTGAGAGCTTGTGCTGCTT-TTATCCTTCCTTGGATGTCTGAGACCTTTTAT
66 TTCGCCGGGCTTGAGAGCTTGTGCTGCTTCAT-TCCTTCCTTGGATGTCTGAGACCTTTTAT
7908553 TATATTTTTA
Statistics
Matches: 374, Mismatches: 26, Indels: 15
0.90 0.06 0.04
Matches are distributed among these distances:
277 125 0.33
278 57 0.15
286 83 0.22
287 109 0.29
ACGTcount: A:0.23, C:0.17, G:0.19, T:0.40
Consensus pattern (278 bp):
ATGATGATAAGTTGTAAGGCTTGTTTCTCAAAACATTCGCAGTGGCCGCCTAAGAGCTTTCGCCT
TTCGCCGGGCTTGAGAGCTTGTGCTGCTTCATTCCTTCCTTGGATGTCTGAGACCTTTTATGACT
TCTATATAATTGTTGTTTTCATTATTTGTGCTTGAAAATCCAATTACTTCCACAGAAATCTGGTT
CCATATTTTTTTTATCAGTTCAATTGATAAACGATATTCTTAAAATTCAGTCAAAGGAAAATATA
TTTCTTGTGTATGGGTTT
Found at i:7919753 original size:46 final size:46
Alignment explanation
Indices: 7919700--7919875 Score: 223
Period size: 46 Copynumber: 3.8 Consensus size: 46
7919690 TATTTGGGCA
7919700 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*** * *
7919746 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA--
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAATG
*
7919793 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
7919839 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
7919876 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 69 0.62
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:7919855 original size:93 final size:93
Alignment explanation
Indices: 7919696--7919867 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
7919686 AGGATATTTG
*
7919696 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAG
7919761 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
7919789 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAG
7919854 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
7919868 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:7929409 original size:32 final size:32
Alignment explanation
Indices: 7929351--7929414 Score: 92
Period size: 32 Copynumber: 2.0 Consensus size: 32
7929341 ATCATTGGAT
*
7929351 CATTTTATCCGTGATTGGCTGGAGTTGGCTGA
1 CATTTTATCCGTGATTGGCCGGAGTTGGCTGA
** *
7929383 CATTTTATCCGTGATTTTCCGTAGTTGGCTGA
1 CATTTTATCCGTGATTGGCCGGAGTTGGCTGA
7929415 ACAAGATACC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.16, C:0.17, G:0.27, T:0.41
Consensus pattern (32 bp):
CATTTTATCCGTGATTGGCCGGAGTTGGCTGA
Found at i:7933235 original size:37 final size:37
Alignment explanation
Indices: 7932968--7933472 Score: 211
Period size: 38 Copynumber: 13.8 Consensus size: 37
7932958 TAAACCTGTA
* * *
7932968 TAAGGCAA-CTATAAAAAGGTTGGTATAGTTC-TTGTC
1 TAAGGCAACCTTTAAAAAGGTTGGGATAG-ACATTGTC
** * * **
7933004 TAAGGCAAATTTTAAGAATA-GTTGGCATAGATACCGTC
1 TAAGGCAACCTTTAA-AA-AGGTTGGGATAGACATTGTC
* * * ** *
7933042 TATGGAAACCTTT-AAAAGGTTGGGATTGAC-TCATT
1 TAAGGCAACCTTTAAAAAGGTTGGGATAGACATTGTC
* *
7933077 TAAGGCAACC-TTAAAAAGGTTGGGATAGGCCTTGTC
1 TAAGGCAACCTTTAAAAAGGTTGGGATAGACATTGTC
* * * ** * * * *
7933113 TAAAGTAACCCTTAAAAAAAATTGGTATAAACCTTATC
1 TAAGGCAA-CCTTTAAAAAGGTTGGGATAGACATTGTC
* * * * *
7933151 TAAAGTAACTTTTTAAAAAAGTTGGGATAGATATTGTC
1 TAAGGCAAC-CTTTAAAAAGGTTGGGATAGACATTGTC
* * *
7933189 TAAGGCAACCTTTAGGAAAGGTTGGGATAGGCA-TGTT
1 TAAGGCAACCTTTA-AAAAGGTTGGGATAGACATTGTC
* * *
7933226 TAAGGCAACCTTTTAAAAATGTTAGAATAGACATTGTC
1 TAAGGCAACC-TTTAAAAAGGTTGGGATAGACATTGTC
* * *
7933264 TAAGGCAACCTTAAAAAAAGGTTGGGATAGAC-TTATT
1 TAAGGCAACCTT-TAAAAAGGTTGGGATAGACATTGTC
* * * *
7933301 TAAAGCAA-CGTTAAAAAGGTTGTGATAG--ATTCTTC
1 TAAGGCAACCTTTAAAAAGGTTGGGATAGACATT-GTC
* * * * *
7933336 TAAGGTAACC-TTAAAAATGTTGGTATATATC-TTATC
1 TAAGGCAACCTTTAAAAAGGTTGGGATAGA-CATTGTC
* * * * *
7933372 TAAGGCGACTTTTAGCAAAGGTTGGGATTGAC-CTGTC
1 TAAGGCAACCTTTA-AAAAGGTTGGGATAGACATTGTC
* * * ** * *
7933409 TAAGACAA-CGTTAAAAATGTTGAAATAGAC-CTGTT
1 TAAGGCAACCTTTAAAAAGGTTGGGATAGACATTGTC
*
7933444 TACA-GCAACC-CT-AAAAGGTTGGGATAGAC
1 TA-AGGCAACCTTTAAAAAGGTTGGGATAGAC
7933473 CTTTTCCAAT
Statistics
Matches: 346, Mismatches: 99, Indels: 50
0.70 0.20 0.10
Matches are distributed among these distances:
34 18 0.05
35 84 0.24
36 44 0.13
37 65 0.19
38 134 0.39
39 1 0.00
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.30
Consensus pattern (37 bp):
TAAGGCAACCTTTAAAAAGGTTGGGATAGACATTGTC
Found at i:7933303 original size:75 final size:75
Alignment explanation
Indices: 7933055--7933352 Score: 250
Period size: 75 Copynumber: 4.0 Consensus size: 75
7933045 GGAAACCTTT
* * * * * * *
7933055 AAAAGGTTGGGATTGACTCATTTAAGGCAACC--TTAAAAAGGTTGGGATAGGCCTTGTCTAAAG
1 AAAAGGTTGGGATAGACTTATTTAAAGCAACCTTTTAAAAAAGTTGGGATAGACATTGTCTAAGG
*
7933118 TAACCCTTAAA
66 CAA-CCTTAAA
* * * * * * *
7933129 AAAA-ATTGGTATAAACCTTATCTAAAGTAACTTTTTAAAAAAGTTGGGATAGATATTGTCTAAG
1 AAAAGGTTGGGATAGA-CTTATTTAAAGCAACCTTTTAAAAAAGTTGGGATAGACATTGTCTAAG
* *
7933193 GCAACCTTTAG
65 GCAACCTTAAA
* * * * * * * *
7933204 GAAAGGTTGGGATAGGCATGTTTAAGGCAACCTTTTAAAAATGTTAGAATAGACATTGTCTAAGG
1 AAAAGGTTGGGATAGACTTATTTAAAGCAACCTTTTAAAAAAGTTGGGATAGACATTGTCTAAGG
7933269 CAACCTTAAA
66 CAACCTTAAA
* * * *
7933279 AAAAGGTTGGGATAGACTTATTTAAAGCAA-C-GTTAAAAAGGTTGTGATAG--ATTCTTCTAAG
1 AAAAGGTTGGGATAGACTTATTTAAAGCAACCTTTTAAAAAAGTTGGGATAGACATT-GTCTAAG
*
7933340 GTAACCTTAAA
65 GCAACCTTAAA
7933351 AA
1 AA
7933353 TGTTGGTATA
Statistics
Matches: 173, Mismatches: 46, Indels: 12
0.75 0.20 0.05
Matches are distributed among these distances:
71 3 0.02
72 18 0.10
73 21 0.12
74 16 0.09
75 80 0.46
76 35 0.20
ACGTcount: A:0.38, C:0.12, G:0.20, T:0.30
Consensus pattern (75 bp):
AAAAGGTTGGGATAGACTTATTTAAAGCAACCTTTTAAAAAAGTTGGGATAGACATTGTCTAAGG
CAACCTTAAA
Found at i:7933881 original size:2 final size:2
Alignment explanation
Indices: 7933874--7933900 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
7933864 CCACTATAAC
7933874 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
7933901 AATACATAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7938368 original size:47 final size:47
Alignment explanation
Indices: 7938310--7938662 Score: 598
Period size: 47 Copynumber: 7.5 Consensus size: 47
7938300 ACCTACCAAA
* * *
7938310 TAATGCATACTTTATCCGGATAAAGTATGCATTATTAGTGAATATGC
1 TAATACATACTTTATCCGGGTAAAGTATGCATTATTAGTGAATCTGC
* *
7938357 TAATACATACTTTATCCGGATAAAGTATGCATTATTAGTGAATATGC
1 TAATACATACTTTATCCGGGTAAAGTATGCATTATTAGTGAATCTGC
*
7938404 TAATACATACTTTATCCGGGTAAAGTATGCATTATTAGTGGATCTGC
1 TAATACATACTTTATCCGGGTAAAGTATGCATTATTAGTGAATCTGC
* *
7938451 TAATACATACTTTATCCGGATAAAGTATGCATTATTAGTGAATATGC
1 TAATACATACTTTATCCGGGTAAAGTATGCATTATTAGTGAATCTGC
7938498 TAATACATACTTTATCCGGGTAAAGTATGCATTATTAGTGAATCTGC
1 TAATACATACTTTATCCGGGTAAAGTATGCATTATTAGTGAATCTGC
* *
7938545 TAATACATACTTTACCCGGGTAAAGTATGCATTATTAGTGGATCTGC
1 TAATACATACTTTATCCGGGTAAAGTATGCATTATTAGTGAATCTGC
* *
7938592 TAATACATACTTTATCCGGGTAAAGTATGCATTATTAGTGAATCCGA
1 TAATACATACTTTATCCGGGTAAAGTATGCATTATTAGTGAATCTGC
7938639 TAATACATACTTTATCCGGGTAAA
1 TAATACATACTTTATCCGGGTAAA
7938663 AAACCCGAAA
Statistics
Matches: 291, Mismatches: 15, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 291 1.00
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.35
Consensus pattern (47 bp):
TAATACATACTTTATCCGGGTAAAGTATGCATTATTAGTGAATCTGC
Found at i:7945199 original size:39 final size:39
Alignment explanation
Indices: 7945155--7945237 Score: 166
Period size: 39 Copynumber: 2.1 Consensus size: 39
7945145 GAATTTATTC
7945155 ACTTTATAAAATATAATATATTTTACTATTACACTCAAT
1 ACTTTATAAAATATAATATATTTTACTATTACACTCAAT
7945194 ACTTTATAAAATATAATATATTTTACTATTACACTCAAT
1 ACTTTATAAAATATAATATATTTTACTATTACACTCAAT
7945233 ACTTT
1 ACTTT
7945238 CAAAGTTGTA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 44 1.00
ACGTcount: A:0.42, C:0.13, G:0.00, T:0.45
Consensus pattern (39 bp):
ACTTTATAAAATATAATATATTTTACTATTACACTCAAT
Found at i:7946108 original size:7 final size:7
Alignment explanation
Indices: 7946083--7946122 Score: 62
Period size: 7 Copynumber: 5.6 Consensus size: 7
7946073 CCATACACCT
7946083 TAAACCC
1 TAAACCC
7946090 TAAACTCC
1 TAAAC-CC
*
7946098 TAAACCT
1 TAAACCC
7946105 TAAACCC
1 TAAACCC
7946112 TAAACCC
1 TAAACCC
7946119 TAAA
1 TAAA
7946123 TATAGAAGAT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
7 23 0.77
8 7 0.23
ACGTcount: A:0.45, C:0.35, G:0.00, T:0.20
Consensus pattern (7 bp):
TAAACCC
Found at i:7946115 original size:14 final size:14
Alignment explanation
Indices: 7946011--7946122 Score: 68
Period size: 14 Copynumber: 7.7 Consensus size: 14
7946001 GTTTTTATCA
*
7946011 AAACCCTAAGCCTT
1 AAACCCTAAACCTT
*
7946025 AAACCAC-AAACTTT
1 AAACC-CTAAACCTT
*
7946039 AAA-CCTCAAGACCATA
1 AAACCCT-AA-ACC-TT
7946055 AAATCCC-AAACCTT
1 AAA-CCCTAAACCTT
* *
7946069 AAAACCATACACCTT
1 -AAACCCTAAACCTT
*
7946084 AAACCCTAAACTCCT
1 AAACCCTAAAC-CTT
* *
7946099 AAACCTTAAACCCT
1 AAACCCTAAACCTT
7946113 AAACCCTAAA
1 AAACCCTAAA
7946123 TATAGAAGAT
Statistics
Matches: 76, Mismatches: 12, Indels: 20
0.70 0.11 0.19
Matches are distributed among these distances:
12 1 0.01
13 1 0.01
14 39 0.51
15 27 0.36
16 6 0.08
18 2 0.03
ACGTcount: A:0.46, C:0.34, G:0.02, T:0.19
Consensus pattern (14 bp):
AAACCCTAAACCTT
Found at i:7946281 original size:7 final size:7
Alignment explanation
Indices: 7946269--7946303 Score: 61
Period size: 7 Copynumber: 5.0 Consensus size: 7
7946259 GGCCAACTCT
7946269 TAAACCC
1 TAAACCC
7946276 TAAACCC
1 TAAACCC
*
7946283 TAAACTC
1 TAAACCC
7946290 TAAACCC
1 TAAACCC
7946297 TAAACCC
1 TAAACCC
7946304 ATTAGGCATG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.43, C:0.40, G:0.00, T:0.17
Consensus pattern (7 bp):
TAAACCC
Found at i:7946295 original size:21 final size:22
Alignment explanation
Indices: 7946263--7946303 Score: 75
Period size: 21 Copynumber: 1.9 Consensus size: 22
7946253 GATTTAGGCC
7946263 AACTCTTAAACCCTAAACCCTA
1 AACTCTTAAACCCTAAACCCTA
7946285 AACTC-TAAACCCTAAACCC
1 AACTCTTAAACCCTAAACCC
7946304 ATTAGGCATG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.41, C:0.39, G:0.00, T:0.20
Consensus pattern (22 bp):
AACTCTTAAACCCTAAACCCTA
Found at i:7946646 original size:130 final size:130
Alignment explanation
Indices: 7946413--7946653 Score: 322
Period size: 130 Copynumber: 1.9 Consensus size: 130
7946403 AGCATAGTGT
**
7946413 TGGACAAAGCTGACTCTTATTTAAGCGTTGCATTAAGCATGCATATCACAACCCTTATATAAAAA
1 TGGACAAAGCCAACTCTTATTTAAGCGTTGCATTAAGCATGCATATCACAACCCTTATATAAAAA
* *
7946478 GTTAACCTCAGCGTATGTCAGCAAGTCTATCCCAACACTTAGGAAAATATATATCGTCTTAGGAC
66 GTTAACCTAAGCATATGTCAGCAAGTCTATCCCAACACTTAGGAAAATATATATCGTCTTAGGAC
* ** * * *
7946543 TGGACAAAGCCAACTCTTATTTAAGCGTTGCCTTTGGCATTCATATCCCAACCCTTATATAAAGA
1 TGGACAAAGCCAACTCTTATTTAAGCGTTGCATTAAGCATGCATATCACAACCCTTATATAAAAA
** ** * *
7946608 GTT-GGCTAAAGCATATGTTGGCCAGTCTATCCCAACACTTCGGAAA
66 GTTAACCT-AAGCATATGTCAGCAAGTCTATCCCAACACTTAGGAAA
7946654 GTGTCGCACA
Statistics
Matches: 94, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
129 2 0.02
130 92 0.98
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.29
Consensus pattern (130 bp):
TGGACAAAGCCAACTCTTATTTAAGCGTTGCATTAAGCATGCATATCACAACCCTTATATAAAAA
GTTAACCTAAGCATATGTCAGCAAGTCTATCCCAACACTTAGGAAAATATATATCGTCTTAGGAC
Found at i:7947003 original size:132 final size:132
Alignment explanation
Indices: 7946631--7947133 Score: 708
Period size: 131 Copynumber: 3.8 Consensus size: 132
7946621 TATGTTGGCC
* * * * *
7946631 AGTCTATCCCAACACTTCGGAAAGTGTCG-CACAAAAACTGTAGTC-TAGAACGAGACAAAAGCC
1 AGTCTATCCCAACACTTAGGAAAGTGTCGCCA-AAAAAGTGTCGTCTTAGGACTAGACAAAAGCC
* * *
7946694 AACTCTTATTCAAGCGTTGCCTTAGGCTTACATATCCCAACCCTTATACAAAGAGTGGGCCAGAG
65 AACTCTTATTCAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGGCCAAAG
7946759 CAT
130 CAT
* ** * * * * *
7946762 AGTCTATCGCAACACTTATTAAAATGTTGCCACAAAAGTGTCGTATTAGGACTACA-AAAAGCCA
1 AGTCTATCCCAACACTTAGGAAAGTGTCGCCAAAAAAGTGTCGTCTTAGGACTAGACAAAAGCCA
* * *
7946826 ACTCTTATTCAAGCGTTGCCTTAGTCATACATATCCCAACCCTTATATAAAGAGTTGCCCAAAGC
66 ACTCTTATTCAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGGCCAAAGC
7946891 AT
131 AT
* *
7946893 AGTCTATCCCAACACTTAGGAAAGTGTCACCAAAAAAGTGTCGTCTTAGGACTATACAAAAGCCA
1 AGTCTATCCCAACACTTAGGAAAGTGTCGCCAAAAAAGTGTCGTCTTAGGACTAGACAAAAGCCA
* *
7946958 ACTTTTATTCAAGCGTTGCCTTAGACATACATATCCCAACCCTTATACAAAGAGTTGGCCAAAGC
66 ACTCTTATTCAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGGCCAAAGC
7947023 AT
131 AT
* * **
7947025 AGTCTATCCCAACACTTAGGAAA-TGTTGCCACAAAAGTGTCGTCTTAGGACTAGACAAAAATCA
1 AGTCTATCCCAACACTTAGGAAAGTGTCGCCAAAAAAGTGTCGTCTTAGGACTAGACAAAAGCCA
* *
7947089 ACTCTTATTCTAGCGTTGCTTTAGGCATACATATCCCAACCCTTA
66 ACTCTTATTCAAGCGTTGCCTTAGGCATACATATCCCAACCCTTA
7947134 GGAAAGTGTT
Statistics
Matches: 327, Mismatches: 42, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
131 224 0.69
132 103 0.31
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.26
Consensus pattern (132 bp):
AGTCTATCCCAACACTTAGGAAAGTGTCGCCAAAAAAGTGTCGTCTTAGGACTAGACAAAAGCCA
ACTCTTATTCAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGGCCAAAGC
AT
Found at i:7947030 original size:263 final size:265
Alignment explanation
Indices: 7946548--7947133 Score: 815
Period size: 263 Copynumber: 2.2 Consensus size: 265
7946538 AGGACTGGAC
* * * *
7946548 AAAGCCAACTCTTATTTAAGCGTTGCCTTTGGCATTCATATCCCAACCCTTATATAAAGAGTTGG
1 AAAGCCAACTCTTATTCAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATATAAAGAGTTGC
* * *
7946613 CTAAAGCATATGTTGGCCAGTCTATCCCAACACTTCGGAAAGTGTCGCACAAAAACTGTAGTCTA
66 CCAAAGCA-A--TT---CAGTCTATCCCAACACTTAGGAAAGTGTCCCACAAAAACTGTAGTCTA
* *
7946678 GAACGAGACAAAAGCCAACTCTTATTCAAGCGTTGCCTTAGGCTTACATATCCCAACCCTTATAC
125 GAACGAGACAAAAGCCAACTCTTATTCAAGCGTTGCCTTAGACATACATATCCCAACCCTTATAC
* * *
7946743 AAAGAGTGGGCCAGAGCATAGTCTATCGCAACACTTATTAAAATGTTGCCACAAAAGTGTCGTAT
190 AAAGAGTGGGCCAAAGCATAGTCTATCCCAACACTTA-GAAAATGTTGCCACAAAAGTGTCGTAT
7946808 TAGGACT-ACAA
254 TAGGACTAACAA
*
7946819 AAAGCCAACTCTTATTCAAGCGTTGCCTTAGTCATACATATCCCAACCCTTATATAAAGAGTTGC
1 AAAGCCAACTCTTATTCAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATATAAAGAGTTGC
* * *
7946884 CCAAAGC-A-T-AGTCTATCCCAACACTTAGGAAAGTGTCACCA-AAAAAGTGTCGTCTTAGGAC
66 CCAAAGCAATTCAGTCTATCCCAACACTTAGGAAAGTGTC-CCACAAAAACTGTAGTC-TAGAAC
* * *
7946945 TATACAAAAGCCAACTTTTATTCAAGCGTTGCCTTAGACATACATATCCCAACCCTTATACAAAG
129 GAGACAAAAGCCAACTCTTATTCAAGCGTTGCCTTAGACATACATATCCCAACCCTTATACAAAG
* * *
7947010 AGTTGGCCAAAGCATAGTCTATCCCAACACTTAGGAAATGTTGCCACAAAAGTGTCGTCTTAGGA
194 AGTGGGCCAAAGCATAGTCTATCCCAACACTTAGAAAATGTTGCCACAAAAGTGTCGTATTAGGA
7947075 CTAGACAA
259 CTA-ACAA
* * *
7947083 AAA-TCAACTCTTATTCTAGCGTTGCTTTAGGCATACATATCCCAACCCTTA
1 AAAGCCAACTCTTATTCAAGCGTTGCCTTAGGCATACATATCCCAACCCTTA
7947134 GGAAAGTGTT
Statistics
Matches: 285, Mismatches: 26, Indels: 16
0.87 0.08 0.05
Matches are distributed among these distances:
262 69 0.24
263 141 0.49
264 7 0.02
266 1 0.00
269 1 0.00
271 66 0.23
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.26
Consensus pattern (265 bp):
AAAGCCAACTCTTATTCAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATATAAAGAGTTGC
CCAAAGCAATTCAGTCTATCCCAACACTTAGGAAAGTGTCCCACAAAAACTGTAGTCTAGAACGA
GACAAAAGCCAACTCTTATTCAAGCGTTGCCTTAGACATACATATCCCAACCCTTATACAAAGAG
TGGGCCAAAGCATAGTCTATCCCAACACTTAGAAAATGTTGCCACAAAAGTGTCGTATTAGGACT
AACAA
Found at i:7947134 original size:91 final size:91
Alignment explanation
Indices: 7947029--7947224 Score: 272
Period size: 91 Copynumber: 2.2 Consensus size: 91
7947019 AAGCATAGTC
* *
7947029 TATCCCAACACTTAGGAAA-TGTTG-CCACAAAAGTGTCGTCTTAGGACTAGACAAAAATCAACT
1 TATCCCAACCCTTAGGAAAGTGTTGCCCA-AAAAGTGTCGTCTTAGGACTAGAC-AAAAGCAACT
7947092 CTTATTCT-AGCGTTGCTTTAGGCATACA
64 CTTATT-TAAGCGTTGCTTTAGGCATACA
* * *
7947120 TATCCCAACCCTTAGGAAAGTGTTTCCCAAAAAGTTTCGTCTTAGGACTAGACAAAGGCAACTCT
1 TATCCCAACCCTTAGGAAAGTGTTGCCCAAAAAGTGTCGTCTTAGGACTAGACAAAAGCAACTCT
*
7947185 TATTTAAGCGTTGCTTTAGGCATGCA
66 TATTTAAGCGTTGCTTTAGGCATACA
* *
7947211 TATACCAAACCTTA
1 TATCCCAACCCTTA
7947225 TACAAAGAGT
Statistics
Matches: 94, Mismatches: 8, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
90 1 0.01
91 63 0.67
92 27 0.29
93 3 0.03
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.29
Consensus pattern (91 bp):
TATCCCAACCCTTAGGAAAGTGTTGCCCAAAAAGTGTCGTCTTAGGACTAGACAAAAGCAACTCT
TATTTAAGCGTTGCTTTAGGCATACA
Found at i:7952408 original size:3 final size:3
Alignment explanation
Indices: 7952402--7952429 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
7952392 ACTACCTTAC
7952402 CCT CCT CCT CCT CCT CCT CCT CCT CCT C
1 CCT CCT CCT CCT CCT CCT CCT CCT CCT C
7952430 TTTAATTGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.00, C:0.68, G:0.00, T:0.32
Consensus pattern (3 bp):
CCT
Found at i:7953422 original size:32 final size:32
Alignment explanation
Indices: 7953386--7953452 Score: 116
Period size: 32 Copynumber: 2.1 Consensus size: 32
7953376 AAGTCTACTA
*
7953386 ATTTTGGGTTTAGCTTTAATGCTTAATTTAAG
1 ATTTTGGATTTAGCTTTAATGCTTAATTTAAG
*
7953418 ATTTTGGATTTAGCTTTAATGTTTAATTTAAG
1 ATTTTGGATTTAGCTTTAATGCTTAATTTAAG
7953450 ATT
1 ATT
7953453 GCTGTCAAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.27, C:0.04, G:0.16, T:0.52
Consensus pattern (32 bp):
ATTTTGGATTTAGCTTTAATGCTTAATTTAAG
Found at i:7954460 original size:86 final size:86
Alignment explanation
Indices: 7954289--7954465 Score: 282
Period size: 86 Copynumber: 2.1 Consensus size: 86
7954279 AATTTTGAGG
*
7954289 CATATTCTCGATTGGTAAACATGGAGAGTTGAATCATAAATTTATGATTTTATATTCTACTTCAC
1 CATATTCTCGATTAGTAAACATGGAGAGTTGAATCATAAATTTATGATTTTATATTCTACTTCAC
*
7954354 GATACCTTTACAATGGTATAC
66 GATACCTTTACAACGGTATAC
* * * * *
7954375 TATATTCTTGATTAGTAAACGTGGAGGGTTGAATCATAAATTTATGATTTTATATTCTACTTCAT
1 CATATTCTCGATTAGTAAACATGGAGAGTTGAATCATAAATTTATGATTTTATATTCTACTTCAC
*
7954440 GATACCTTTACAACGTTATAC
66 GATACCTTTACAACGGTATAC
7954461 CATAT
1 CATAT
7954466 GCTCAAAATG
Statistics
Matches: 82, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
86 82 1.00
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.40
Consensus pattern (86 bp):
CATATTCTCGATTAGTAAACATGGAGAGTTGAATCATAAATTTATGATTTTATATTCTACTTCAC
GATACCTTTACAACGGTATAC
Found at i:7955535 original size:353 final size:353
Alignment explanation
Indices: 7954848--7955545 Score: 1130
Period size: 353 Copynumber: 2.0 Consensus size: 353
7954838 AATCAAATTG
* * *
7954848 ATTGATTTTATTTAAATTGACTTAAAGGCTCCTTTAATGCATATTTTTATATTTATTTATGGAAA
1 ATTGATTTTATTTAAATTGACTTAAAGGCTCATTTAATGCAGATTTATATATTTATTTATGGAAA
* *
7954913 TTTCCAAAATTCCTCTATATTGAATGCCTATAAAAACCTGAAGAATATTGCAGAATTCTTTAGAG
66 TTTCCAAAATTCCTCCATATTGAATGCCTATAAAAACCTAAAGAATATTGCAGAATTCTTTAGAG
* *
7954978 ATACACAACAAATTTATTTCACTCTGGAAAATTTTTTTCTTTTTCTCTCCAAATTTTTAAAAGTT
131 ATACACAACAAATTTATTTCACTCTGAAAAATTCTTTTCTTTTTCTCTCCAAATTTTTAAAAGTT
*
7955043 TCGGTAATAGAAGAAGGTAAGGTTTGTTTGTTGATCATGCATAGGTACTACTGCCGTGATCATTT
196 TCGGTAATAGAAGAAGGTAAGGTTTGTTTGTTGATCATGCATAGGTACTACTACCGTGATCATTT
** *
7955108 TGTTGTTGTATCCTAGGAGATAGACGACCAATGTTTCTTCAAGCACCATAGGAGCGACTGAATCT
261 TGTTGTTGTATCCTAGGAGATAGACGACCAACATTTCTTCAAGCACCATAGGAGCGACTCAATCT
*
7955173 GTCTTAAGGAAACTGTGAAAGAATATTA
326 ATCTTAAGGAAACTGTGAAAGAATATTA
*
7955201 ATTGATTTT-TTTCAAATTGACTTAAAGGCTCATTTAATGTAGATTTATATATTTATTTATGGAA
1 ATTGATTTTATTT-AAATTGACTTAAAGGCTCATTTAATGCAGATTTATATATTTATTTATGGAA
** * *
7955265 ATTTTTAAAATTCCTCCATATTGAATGTCTATAAAAGCCTAAAGAATATTGCAGAATTCTTTAGA
65 ATTTCCAAAATTCCTCCATATTGAATGCCTATAAAAACCTAAAGAATATTGCAGAATTCTTTAGA
7955330 GATACACAACAAATTTATTTCACTCTGAAAAATTCTTTTCTTTTTCTCTCCAAATTTTTAAAAGT
130 GATACACAACAAATTTATTTCACTCTGAAAAATTCTTTTCTTTTTCTCTCCAAATTTTTAAAAGT
* * *
7955395 TTTGGTAATAGACGAAGGTAAGGTTTGTTTGTTGATCACTGCGTAGGTACTACTACCGTGATCAT
195 TTCGGTAATAGAAGAAGGTAAGGTTTGTTTGTTGATCA-TGCATAGGTACTACTACCGTGATCAT
* * * *
7955460 TTTGTTGTTGTATCCTAGGAGATAGACGACCAACATTTTTTTAAGTACCATAGGAGCGGC-CAAT
259 TTTGTTGTTGTATCCTAGGAGATAGACGACCAACATTTCTTCAAGCACCATAGGAGCGACTCAAT
* *
7955524 CTATGTTAAGGAAATTGTGAAA
324 CTATCTTAAGGAAACTGTGAAA
7955546 ACATACTTCA
Statistics
Matches: 317, Mismatches: 26, Indels: 4
0.91 0.07 0.01
Matches are distributed among these distances:
352 3 0.01
353 236 0.74
354 78 0.25
ACGTcount: A:0.32, C:0.14, G:0.16, T:0.38
Consensus pattern (353 bp):
ATTGATTTTATTTAAATTGACTTAAAGGCTCATTTAATGCAGATTTATATATTTATTTATGGAAA
TTTCCAAAATTCCTCCATATTGAATGCCTATAAAAACCTAAAGAATATTGCAGAATTCTTTAGAG
ATACACAACAAATTTATTTCACTCTGAAAAATTCTTTTCTTTTTCTCTCCAAATTTTTAAAAGTT
TCGGTAATAGAAGAAGGTAAGGTTTGTTTGTTGATCATGCATAGGTACTACTACCGTGATCATTT
TGTTGTTGTATCCTAGGAGATAGACGACCAACATTTCTTCAAGCACCATAGGAGCGACTCAATCT
ATCTTAAGGAAACTGTGAAAGAATATTA
Found at i:7956032 original size:82 final size:81
Alignment explanation
Indices: 7955890--7956229 Score: 410
Period size: 82 Copynumber: 4.1 Consensus size: 81
7955880 AAAAAATTTA
* * * **
7955890 AATTAAATAATACTATTTCGGGATTTATTCCAGTTATTTAACAGATTTTATTTAATTTTGATTTT
1 AATTGAATAATTCTATTTCGGGATTTATTCCCGCCATTTAACAGATTTTATTT-ATTTTGATTTT
* *
7955955 GTTTCTAAACGAGAATT
65 GTTTCCAAACAAGAATT
* **
7955972 AATTGAATAATTCTATTTTGGGATTTATTCTTGCCATTTAACAGATTTTATTTGATTTTGATTTT
1 AATTGAATAATTCTATTTCGGGATTTATTCCCGCCATTTAACAGATTTTATTT-ATTTTGATTTT
**
7956037 GTTTCCAAATGAGAATT
65 GTTTCCAAACAAGAATT
* *** * * *
7956054 ACTTGAATAATTCTATTTCAAAATTTATTCCCGTCGTTTAACAGATTTTATTCTATTTTAATTTT
1 AATTGAATAATTCTATTTCGGGATTTATTCCCGCCATTTAACAGATTTTATT-TATTTTGATTTT
7956119 GTTTCCAAACAAGAATT
65 GTTTCCAAACAAGAATT
* * *
7956136 AATTGAATAATTCTCTTTCGGGATTTATTCTCGCCATTTAACAGATTTTATTCAGTTTTGATTTT
1 AATTGAATAATTCTATTTCGGGATTTATTCCCGCCATTTAACAGATTTTATTTA-TTTTGATTTT
* * *
7956201 GTTTCTAAATAAGATTT
65 GTTTCCAAACAAGAATT
*
7956218 AATTAAATAATT
1 AATTGAATAATT
7956230 TTGTTTCAAG
Statistics
Matches: 220, Mismatches: 36, Indels: 4
0.85 0.14 0.02
Matches are distributed among these distances:
81 1 0.00
82 218 0.99
83 1 0.00
ACGTcount: A:0.31, C:0.11, G:0.11, T:0.48
Consensus pattern (81 bp):
AATTGAATAATTCTATTTCGGGATTTATTCCCGCCATTTAACAGATTTTATTTATTTTGATTTTG
TTTCCAAACAAGAATT
Found at i:7956174 original size:164 final size:164
Alignment explanation
Indices: 7955890--7956238 Score: 477
Period size: 164 Copynumber: 2.1 Consensus size: 164
7955880 AAAAAATTTA
* *** * *
7955890 AATTAAATAATACTATTTCGGGATTTATTCCAGTTATTTAACAGATTTTATTTAATTTTGATTTT
1 AATTAAATAATTCTATTTCAAAATTTATTCCAGTCATTTAACAGATTTTATTTAATTTTAATTTT
* * * *
7955955 GTTTCTAAACGAGAATTAATTGAATAATTCTATTTTGGGATTTATTCTTGCCATTTAACAGATTT
66 GTTTCCAAACAAGAATTAATTGAATAATTCTATTTCGGGATTTATTCTCGCCATTTAACAGATTT
* *
7956020 TATT-TGATTTTGATTTTGTTTCCAAATGAGAATT
131 TATTCAG-TTTTGATTTTGTTTCCAAATAAGAATT
* * * *
7956054 ACTTGAATAATTCTATTTCAAAATTTATTCCCGTCGTTTAACAGATTTTATTCT-ATTTTAATTT
1 AATTAAATAATTCTATTTCAAAATTTATTCCAGTCATTTAACAGATTTTATT-TAATTTTAATTT
*
7956118 TGTTTCCAAACAAGAATTAATTGAATAATTCTCTTTCGGGATTTATTCTCGCCATTTAACAGATT
65 TGTTTCCAAACAAGAATTAATTGAATAATTCTATTTCGGGATTTATTCTCGCCATTTAACAGATT
* *
7956183 TTATTCAGTTTTGATTTTGTTTCTAAATAAGATTT
130 TTATTCAGTTTTGATTTTGTTTCCAAATAAGAATT
* *
7956218 AATTAAATAATTTTGTTTCAA
1 AATTAAATAATTCTATTTCAA
7956239 GATTCAATCC
Statistics
Matches: 160, Mismatches: 23, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
164 158 0.99
165 2 0.01
ACGTcount: A:0.31, C:0.11, G:0.11, T:0.48
Consensus pattern (164 bp):
AATTAAATAATTCTATTTCAAAATTTATTCCAGTCATTTAACAGATTTTATTTAATTTTAATTTT
GTTTCCAAACAAGAATTAATTGAATAATTCTATTTCGGGATTTATTCTCGCCATTTAACAGATTT
TATTCAGTTTTGATTTTGTTTCCAAATAAGAATT
Found at i:7959362 original size:22 final size:21
Alignment explanation
Indices: 7959303--7959385 Score: 60
Period size: 22 Copynumber: 3.7 Consensus size: 21
7959293 CCTCTTAATC
*
7959303 TTATTTTTATTTCAATCGAGTTT-
1 TTATTTTTATTT-AA--GATTTTA
* *
7959326 TTATTTACTTATTTATGTTTTTA
1 TTATTT--TTATTTAAGATTTTA
7959349 TTCATTTTTATTTAAGATTTTA
1 TT-ATTTTTATTTAAGATTTTA
*
7959371 TTATTTGTTTTTTAA
1 TTATTT-TTATTTAA
7959386 AATTATCTTA
Statistics
Matches: 49, Mismatches: 6, Indels: 11
0.74 0.09 0.17
Matches are distributed among these distances:
21 4 0.08
22 26 0.53
23 8 0.16
24 5 0.10
25 6 0.12
ACGTcount: A:0.23, C:0.05, G:0.06, T:0.66
Consensus pattern (21 bp):
TTATTTTTATTTAAGATTTTA
Found at i:7959558 original size:33 final size:31
Alignment explanation
Indices: 7959480--7959572 Score: 100
Period size: 33 Copynumber: 2.9 Consensus size: 31
7959470 GTAAAATTTC
* *
7959480 TATTTTAAAATTT-TCTTTATACATGTATTTT
1 TATTTTAAAATTTATCATTATACAT-TATTAT
* *
7959511 TGTATTCAAAATTTATACATTATACATTATATAT
1 TAT-TTTAAAATTTAT-CATTATACATTAT-TAT
7959545 TATTTTAAAATTTAT-ATTATACATTATT
1 TATTTTAAAATTTATCATTATACATTATT
7959573 TTTTTATATA
Statistics
Matches: 52, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
30 1 0.02
31 14 0.27
32 9 0.17
33 15 0.29
34 13 0.25
ACGTcount: A:0.37, C:0.06, G:0.02, T:0.55
Consensus pattern (31 bp):
TATTTTAAAATTTATCATTATACATTATTAT
Found at i:7964045 original size:43 final size:43
Alignment explanation
Indices: 7963980--7964242 Score: 456
Period size: 43 Copynumber: 6.1 Consensus size: 43
7963970 TCTGAATTCA
* *
7963980 TTCACCGGCATT-TCGCCTGCTAGGCTCGAAGCTCGATATTAT
1 TTCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATATTAT
*
7964022 TTTACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATATTAT
1 TTCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATATTAT
7964065 TTCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATATTAT
1 TTCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATATTAT
*
7964108 TTCACCGGCATTATAGCCTACTAGGCTCGAAGCCCGATATTAT
1 TTCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATATTAT
* *
7964151 TTCACCGTCATTATAGCCTGCTAAGCTCGAAGCCCGATATTAT
1 TTCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATATTAT
*
7964194 TTCACCGGCATTATATCCTGCTAGGCTCGAAGCCCGATATTAT
1 TTCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATATTAT
7964237 TTCACC
1 TTCACC
7964243 AAGTTTCATG
Statistics
Matches: 209, Mismatches: 11, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
42 11 0.05
43 198 0.95
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (43 bp):
TTCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATATTAT
Found at i:7969377 original size:64 final size:64
Alignment explanation
Indices: 7969268--7969397 Score: 179
Period size: 64 Copynumber: 2.0 Consensus size: 64
7969258 ATTCATTCAT
* *
7969268 ATCACATCCAGTCAGGAGCATTTGATTCATTTCAATCACAGCATCCTAATTATTTGACAGAAGC
1 ATCACATCCAGTCAAGAGCATTTGATTCATTTCAATCACAACATCCTAATTATTTGACAGAAGC
* * ** * * *
7969332 ATCACATCTAGTTAAGAGCATTTGATTCATTTTGATCATAACATCCTAATTATTTGGCATAAGC
1 ATCACATCCAGTCAAGAGCATTTGATTCATTTCAATCACAACATCCTAATTATTTGACAGAAGC
7969396 AT
1 AT
7969398 GATATATAAA
Statistics
Matches: 57, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
64 57 1.00
ACGTcount: A:0.33, C:0.20, G:0.13, T:0.34
Consensus pattern (64 bp):
ATCACATCCAGTCAAGAGCATTTGATTCATTTCAATCACAACATCCTAATTATTTGACAGAAGC
Found at i:7969869 original size:176 final size:176
Alignment explanation
Indices: 7969614--7970155 Score: 764
Period size: 176 Copynumber: 3.1 Consensus size: 176
7969604 TAGACTGAAG
* * *
7969614 ATTGAAGATCTTATCTCCCTGAAGTTGCAGCGGAACAGATTGAAGATGGTGAATCTTATCTCTAT
1 ATTGAAGATTTTATCTCCCTGAAGTTGCAGCGGAGCAGATCGAAGATGGTGAATCTTATCTCTAT
* *
7969679 GTATCGGCAATGGAGCAGATTTTACTGCTAGCCTTATATCTCTGAGGTAGCAAGAAAGCAGGTTA
66 GTATCGGCAATGGAGCAGATTTTACCGCTAGCCTTATCTCTCTGAGGTAGCAAGAAAGCAGGTTA
* * *
7969744 AAGAATGAGTCTTATCTTTCTGAAGTAGCAAGAAAGTAGACTGGGA
131 AAGAATGAGTCTTATCTTCCTGAGGTAGCAAGAAAGCAGACTGGGA
*
7969790 ATTGAAGATTTTATCTCCCTGAAGTTGCAGCGGAGCAGATCGAAGATGGTGAATCTTATCTCCAT
1 ATTGAAGATTTTATCTCCCTGAAGTTGCAGCGGAGCAGATCGAAGATGGTGAATCTTATCTCTAT
* * ** * *
7969855 GTATCAGCAATGGAGTAGATTTTACCATTAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTG
66 GTATCGGCAATGGAGCAGATTTTACCGCTAGCCTTATCTCTCTGAGGTAGCAAGAAAGCAGGTTA
* * * *
7969920 AAGAGTGAGTTTTATCTTCCTGAGGTAGCAAGGATGCAGACTGGGA
131 AAGAATGAGTCTTATCTTCCTGAGGTAGCAAGAAAGCAGACTGGGA
* *
7969966 ATTGAAGATTTTATCTCCCTGAAGTTGCAGCGGAGTAGATCTTCGCAGATGGCT-AATCTTATCT
1 ATTGAAGATTTTATCTCCCTGAAGTTGCAGCGGAGCAGA---TCGAAGATGG-TGAATCTTATCT
* * * * *
7970030 CTATGTATCGGCAATGGGGCAGATTTAATCCGCCAACCTTATCTCTCTGAGGTAGCAAGATAGCA
62 CTATGTATCGGCAATGGAGCAGATTTTA-CCGCTAGCCTTATCTCTCTGAGGTAGCAAGAAAGCA
* *
7970095 GGTTAAAGAATGAGTCTTATCTTCCTGAGGTAGTAAGAAAGCAGACT-GAA
126 GGTTAAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGAAAGCAGACTGGGA
7970145 GATTGAAGATT
1 -ATTGAAGATT
7970156 GGAAGAGGCA
Statistics
Matches: 322, Mismatches: 38, Indels: 8
0.88 0.10 0.02
Matches are distributed among these distances:
176 195 0.61
179 44 0.14
180 83 0.26
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (176 bp):
ATTGAAGATTTTATCTCCCTGAAGTTGCAGCGGAGCAGATCGAAGATGGTGAATCTTATCTCTAT
GTATCGGCAATGGAGCAGATTTTACCGCTAGCCTTATCTCTCTGAGGTAGCAAGAAAGCAGGTTA
AAGAATGAGTCTTATCTTCCTGAGGTAGCAAGAAAGCAGACTGGGA
Found at i:7970284 original size:43 final size:43
Alignment explanation
Indices: 7970214--7970296 Score: 107
Period size: 43 Copynumber: 1.9 Consensus size: 43
7970204 GCCTCAAGCC
**
7970214 TTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGAGTG
1 TTATCTCTCTGAGGTAGCAAGAGAGCAGACTGAAGATTGAGTG
*
7970257 TTATCT-TCCTGAGGTAGTAAG-GAAGCAGACTGAAGATTGA
1 TTATCTCT-CTGAGGTAGCAAGAG-AGCAGACTGAAGATTGA
7970297 AGATTGGAAG
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
42 2 0.06
43 33 0.94
ACGTcount: A:0.30, C:0.12, G:0.30, T:0.28
Consensus pattern (43 bp):
TTATCTCTCTGAGGTAGCAAGAGAGCAGACTGAAGATTGAGTG
Found at i:7970284 original size:146 final size:146
Alignment explanation
Indices: 7970020--7970446 Score: 685
Period size: 146 Copynumber: 2.9 Consensus size: 146
7970010 GCAGATGGCT
* * * *
7970020 AATCTTATCTCTATGTATCGGCAATGGGGCAGATTTAATCCGCCAA-CCTTATCTCTCTGAGGTA
1 AATCTTATCTCTATGTATCCGCAATGGAGCAGATTTAAGCC-TCAAGCCTTATCTCTCTGAGGTA
* * *
7970084 GCAAGATAGCAGGTTAAAGAATGAGTCTTATCTTCCTGAGGTAGTAAGAAAGCAGACTGAAGATT
65 GCAAGAGAGCAGGTTGAAGATTGAGTCTTATCTTCCTGAGGTAGTAAGAAAGCAGACTGAAGATT
7970149 GAAGATTGGAAGAGGCA
130 GAAGATTGGAAGAGGCA
*
7970166 AATCTTATCTCTATGTATCCGCAATGGAGTAGATTTAAGCCTCAAGCCTTATCTCTCTGAGGTAG
1 AATCTTATCTCTATGTATCCGCAATGGAGCAGATTTAAGCCTCAAGCCTTATCTCTCTGAGGTAG
* *
7970231 CAAGAGAGCAGGTTGAAGATTGAGTGTTATCTTCCTGAGGTAGTAAGGAAGCAGACTGAAGATTG
66 CAAGAGAGCAGGTTGAAGATTGAGTCTTATCTTCCTGAGGTAGTAAGAAAGCAGACTGAAGATTG
7970296 AAGATTGGAAGAGGCA
131 AAGATTGGAAGAGGCA
** *
7970312 AATCTTATCTCTATGTATATGTAATGGAGCAGATTTAAGCCTCAAGCCTTATCTCTCTGAGGTAG
1 AATCTTATCTCTATGTATCCGCAATGGAGCAGATTTAAGCCTCAAGCCTTATCTCTCTGAGGTAG
* * * *
7970377 CAAGAGAGCAGGTTGAAGATTGAGTCTTATCTTTCTGAGGTAGCAAAAAAGCAGACTGAAGATTA
66 CAAGAGAGCAGGTTGAAGATTGAGTCTTATCTTCCTGAGGTAGTAAGAAAGCAGACTGAAGATTG
7970442 AAGAT
131 AAGAT
7970447 CTTATCTCCC
Statistics
Matches: 260, Mismatches: 20, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
145 3 0.01
146 257 0.99
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.28
Consensus pattern (146 bp):
AATCTTATCTCTATGTATCCGCAATGGAGCAGATTTAAGCCTCAAGCCTTATCTCTCTGAGGTAG
CAAGAGAGCAGGTTGAAGATTGAGTCTTATCTTCCTGAGGTAGTAAGAAAGCAGACTGAAGATTG
AAGATTGGAAGAGGCA
Found at i:7970386 original size:44 final size:43
Alignment explanation
Indices: 7970338--7970439 Score: 105
Period size: 43 Copynumber: 2.3 Consensus size: 43
7970328 ATATGTAATG
* * *
7970338 GAGCAGATTTAAGCCTCAAGCCTTATCTCTCTGAGGTAGCAAGA
1 GAGCAGATTGAAG-ATCAAGCCTTATCTCTCTGAGGTAGCAAAA
* ** * *
7970382 GAGCAGGTTGAAGATTGAGTCTTATCTTTCTGAGGTAGCAAAA
1 GAGCAGATTGAAGATCAAGCCTTATCTCTCTGAGGTAGCAAAA
* *
7970425 AAGCAGACTGAAGAT
1 GAGCAGATTGAAGAT
7970440 TAAAGATCTT
Statistics
Matches: 47, Mismatches: 11, Indels: 1
0.80 0.19 0.02
Matches are distributed among these distances:
43 36 0.77
44 11 0.23
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.25
Consensus pattern (43 bp):
GAGCAGATTGAAGATCAAGCCTTATCTCTCTGAGGTAGCAAAA
Found at i:7970414 original size:43 final size:43
Alignment explanation
Indices: 7970359--7970454 Score: 120
Period size: 43 Copynumber: 2.2 Consensus size: 43
7970349 AGCCTCAAGC
* * **
7970359 CTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGAGT
1 CTTATCTCTCTGAGGTAGCAAAAAAGCAGACTGAAGATTGAGT
* *
7970402 CTTATCTTTCTGAGGTAGCAAAAAAGCAGACTGAAGATTAAAGAT
1 CTTATCTCTCTGAGGTAGCAAAAAAGCAGACTGAAGATT-GAG-T
7970447 CTTATCTC
1 CTTATCTC
7970455 CCTAAGCAGT
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
43 34 0.77
44 2 0.05
45 8 0.18
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.29
Consensus pattern (43 bp):
CTTATCTCTCTGAGGTAGCAAAAAAGCAGACTGAAGATTGAGT
Found at i:7970635 original size:176 final size:174
Alignment explanation
Indices: 7970303--7970700 Score: 521
Period size: 176 Copynumber: 2.3 Consensus size: 174
7970293 TTGAAGATTG
* * ** *
7970303 GAAGA-GGCAAATCTTATCTCTATGTATATGTAATGGAGCAGATTTAAGCCTCAAGCCTTATCTC
1 GAAGATGGCGAATCTTATCTCCATGTATCGGTAATGGAGCAGATTTAAGCCACAAGCCTTATCTC
* * * *
7970367 TCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGAGTCTTATCTTTCTGAGGTAGCAAAAAAGCAGA
66 TCTAAGGTAACAAGAGAACAGGTTGAAGATTGAGTCTTATCTTCCTGAGGTAGCAAAAAAGCAGA
*
7970432 CTGAAGATTAAAGATCTTATCTCCCTAAGCAGTAGCGGAGCAGATC
131 CTGAAGATTAAAGATCATATCTCCCTAAGCAGTAGCGGAGC--ATC
* ** *
7970478 GAAGATGGCGAGTCTTATCTCCATGTATCGGTAATGGAGCAGATTTTCGCCACTAGCCTTATCTC
1 GAAGATGGCGAATCTTATCTCCATGTATCGGTAATGGAGCAGATTTAAGCCACAAGCCTTATCTC
** **
7970543 TCTAAGGTAACAAGAGAACAGGTTGGTGATTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAG
66 TCTAAGGTAACAAGAGAACAGGTTGAAGATTG-AGTCTTATCTTCCTGAGGTAGCAAAAAAGCAG
* * * * *
7970608 ACTGAAGATTGAAGAT-ATATTTCCCTAAGTAGTTGTGGAGCATC
130 ACTGAAGATTAAAGATCATATCTCCCTAAGCAGTAGCGGAGCATC
* **
7970652 GAGGATGGCGAATCTTATCTCCATGTATCGACAATGGAGCAGATTTAAG
1 GAAGATGGCGAATCTTATCTCCATGTATCGGTAATGGAGCAGATTTAAG
7970701 TCACCAGTCC
Statistics
Matches: 192, Mismatches: 29, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
174 46 0.24
175 5 0.03
176 97 0.51
177 44 0.23
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (174 bp):
GAAGATGGCGAATCTTATCTCCATGTATCGGTAATGGAGCAGATTTAAGCCACAAGCCTTATCTC
TCTAAGGTAACAAGAGAACAGGTTGAAGATTGAGTCTTATCTTCCTGAGGTAGCAAAAAAGCAGA
CTGAAGATTAAAGATCATATCTCCCTAAGCAGTAGCGGAGCATC
Found at i:7971931 original size:22 final size:21
Alignment explanation
Indices: 7971872--7971954 Score: 60
Period size: 22 Copynumber: 3.7 Consensus size: 21
7971862 CCTCTTAATC
*
7971872 TTATTTTTATTTCAATCGAGTTT-
1 TTATTTTTATTT-AA--GATTTTA
* *
7971895 TTATTTACTTATTTATGTTTTTA
1 TTATTT--TTATTTAAGATTTTA
7971918 TTCATTTTTATTTAAGATTTTA
1 TT-ATTTTTATTTAAGATTTTA
*
7971940 TTATTTGTTTTTTAA
1 TTATTT-TTATTTAA
7971955 AATTATCTTA
Statistics
Matches: 49, Mismatches: 6, Indels: 11
0.74 0.09 0.17
Matches are distributed among these distances:
21 4 0.08
22 26 0.53
23 8 0.16
24 5 0.10
25 6 0.12
ACGTcount: A:0.23, C:0.05, G:0.06, T:0.66
Consensus pattern (21 bp):
TTATTTTTATTTAAGATTTTA
Found at i:7972103 original size:34 final size:31
Alignment explanation
Indices: 7972065--7972147 Score: 96
Period size: 31 Copynumber: 2.6 Consensus size: 31
7972055 AAAATTTTCT
7972065 TTATACATGTATTTTTGTA-TTCAAAATTTATACA
1 TTATACAT-TATTTTT-TATTTCAAAATTTAT--A
* * *
7972099 TTATACATTATATATTATTTTAAAATTTATA
1 TTATACATTATTTTTTATTTCAAAATTTATA
7972130 TTATACATTATTTTTTAT
1 TTATACATTATTTTTTAT
7972148 ATATATTGTT
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
31 17 0.40
32 2 0.05
33 16 0.37
34 8 0.19
ACGTcount: A:0.36, C:0.06, G:0.02, T:0.55
Consensus pattern (31 bp):
TTATACATTATTTTTTATTTCAAAATTTATA
Found at i:7972127 original size:33 final size:31
Alignment explanation
Indices: 7972049--7972141 Score: 100
Period size: 33 Copynumber: 2.9 Consensus size: 31
7972039 GTAAAATTTC
* *
7972049 TATTTTAAAATTT-TCTTTATACATGTATTTT
1 TATTTTAAAATTTATCATTATACAT-TATTAT
* *
7972080 TGTATTCAAAATTTATACATTATACATTATATAT
1 TAT-TTTAAAATTTAT-CATTATACATTAT-TAT
7972114 TATTTTAAAATTTAT-ATTATACATTATT
1 TATTTTAAAATTTATCATTATACATTATT
7972142 TTTTATATAT
Statistics
Matches: 52, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
30 1 0.02
31 14 0.27
32 9 0.17
33 15 0.29
34 13 0.25
ACGTcount: A:0.37, C:0.06, G:0.02, T:0.55
Consensus pattern (31 bp):
TATTTTAAAATTTATCATTATACATTATTAT
Found at i:7972896 original size:26 final size:26
Alignment explanation
Indices: 7972860--7973021 Score: 256
Period size: 26 Copynumber: 6.2 Consensus size: 26
7972850 TGATACAAAT
7972860 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
7972886 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
*
7972912 TGATAATGGGTTAGGTAAATGCTT-CA
1 TGATAATAGGTTAGGTAAATG-TTCCA
7972938 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
7972964 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
*
7972990 TGATAAT-GAGTTAGGTAAATGTTTCA
1 TGATAATAG-GTTAGGTAAATGTTCCA
7973016 TGATAA
1 TGATAA
7973022 GAATTTCATG
Statistics
Matches: 129, Mismatches: 4, Indels: 6
0.93 0.03 0.04
Matches are distributed among these distances:
25 3 0.02
26 124 0.96
27 2 0.02
ACGTcount: A:0.34, C:0.06, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:7972950 original size:78 final size:78
Alignment explanation
Indices: 7972860--7973021 Score: 288
Period size: 78 Copynumber: 2.1 Consensus size: 78
7972850 TGATACAAAT
*
7972860 TGATAATAGGTTAGGTAAATGTTCCATGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATAGGTTAGGTAAATGTTCCATGATAATGAGTTA
7972925 GGTAAATGCTTCA
66 GGTAAATGCTTCA
* *
7972938 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCATGATAATGAGTTA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATAGGTTAGGTAAATGTTCCATGATAATGAGTTA
*
7973003 GGTAAATGTTTCA
66 GGTAAATGCTTCA
7973016 TGATAA
1 TGATAA
7973022 GAATTTCATG
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
78 80 1.00
ACGTcount: A:0.34, C:0.06, G:0.24, T:0.36
Consensus pattern (78 bp):
TGATAATAGGTTAGGTAAATGTTCCATGATAATAGGTTAGGTAAATGTTCCATGATAATGAGTTA
GGTAAATGCTTCA
Found at i:7981246 original size:20 final size:20
Alignment explanation
Indices: 7981221--7981258 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
7981211 GTTTAGCTCT
*
7981221 TATGAGCTTCCGTTAACTTA
1 TATGAGCTTCAGTTAACTTA
*
7981241 TATGAGTTTCAGTTAACT
1 TATGAGCTTCAGTTAACT
7981259 CTTTTGGTGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.26, C:0.16, G:0.16, T:0.42
Consensus pattern (20 bp):
TATGAGCTTCAGTTAACTTA
Found at i:7981358 original size:19 final size:19
Alignment explanation
Indices: 7981288--7981396 Score: 84
Period size: 19 Copynumber: 5.7 Consensus size: 19
7981278 GCTCTGATGA
*
7981288 GCTTCAG-TTAGCCTTCAG
1 GCTTCAGTTTAGCCTTCGG
* *
7981306 TCTTCCGTTTAGCACTT-GTG
1 GCTTCAGTTTAGC-CTTCG-G
7981326 TGCTTCAG-TTAGCCTTCGG
1 -GCTTCAGTTTAGCCTTCGG
*
7981345 GCTTCTGTTTAGCCCTT-GTG
1 GCTTCAGTTTAG-CCTTCG-G
7981365 TGCTTCAG-TTAGCCTTCGG
1 -GCTTCAGTTTAGCCTTCGG
*
7981384 GCTTCCGTTTAGC
1 GCTTCAGTTTAGC
7981397 ACTTATGTGC
Statistics
Matches: 72, Mismatches: 8, Indels: 21
0.71 0.08 0.21
Matches are distributed among these distances:
18 17 0.24
19 24 0.33
20 20 0.28
21 11 0.15
ACGTcount: A:0.10, C:0.27, G:0.24, T:0.39
Consensus pattern (19 bp):
GCTTCAGTTTAGCCTTCGG
Found at i:7981376 original size:20 final size:20
Alignment explanation
Indices: 7981288--7981378 Score: 75
Period size: 20 Copynumber: 4.7 Consensus size: 20
7981278 GCTCTGATGA
**
7981288 GCTTCAGTTAG-CCTTCAGT
1 GCTTCAGTTAGCCCTTGTGT
* *
7981307 -CTTCCGTTTAGCACTTGTGT
1 GCTTCAG-TTAGCCCTTGTGT
7981327 GCTTCAGTTAG-CCTTCG-G-
1 GCTTCAGTTAGCCCTT-GTGT
*
7981345 GCTTCTGTTTAGCCCTTGTGT
1 GCTTCAG-TTAGCCCTTGTGT
7981366 GCTTCAGTTAGCC
1 GCTTCAGTTAGCC
7981379 TTCGGGCTTC
Statistics
Matches: 56, Mismatches: 8, Indels: 15
0.71 0.10 0.19
Matches are distributed among these distances:
18 11 0.20
19 13 0.23
20 21 0.38
21 11 0.20
ACGTcount: A:0.11, C:0.26, G:0.23, T:0.40
Consensus pattern (20 bp):
GCTTCAGTTAGCCCTTGTGT
Found at i:7981427 original size:39 final size:39
Alignment explanation
Indices: 7981288--7981411 Score: 194
Period size: 39 Copynumber: 3.2 Consensus size: 39
7981278 GCTCTGATGA
* *
7981288 GCTTCAGTTAGCCTTCAGTCTTCCGTTTAGCACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
* *
7981327 GCTTCAGTTAGCCTTCGGGCTTCTGTTTAGCCCTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
*
7981366 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
*
7981405 GCGTCAG
1 GCTTCAG
7981412 CTTGACTGCA
Statistics
Matches: 77, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 77 1.00
ACGTcount: A:0.11, C:0.26, G:0.24, T:0.39
Consensus pattern (39 bp):
GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
Found at i:7984283 original size:50 final size:50
Alignment explanation
Indices: 7984183--7984319 Score: 120
Period size: 51 Copynumber: 2.7 Consensus size: 50
7984173 TTTAATTGTC
*
7984183 TTTAGATATGATATTTTAAATAAATATAAATATTTATTTAACTTGTTTTG
1 TTTAGATATGATATTTTAAATAAATATAAATATTTATTTAACTTGATTTG
* * * * *
7984233 TTTAGATATGGTGTTTTTATATAAATATAGATATTTGTTTATA-TT-ATTTG
1 TTTAGATATGAT-ATTTTAAATAAATATAAATATTTATTTA-ACTTGATTTG
* * **
7984283 TTCAGATCTTG-TA-TTTAATATAAATATTTATATTTAT
1 TTTAGAT-ATGATATTTTAA-ATAAATATAAATATTTAT
7984320 ATTTGTTCGC
Statistics
Matches: 70, Mismatches: 13, Indels: 9
0.76 0.14 0.10
Matches are distributed among these distances:
48 4 0.06
49 15 0.21
50 22 0.31
51 28 0.40
52 1 0.01
ACGTcount: A:0.34, C:0.02, G:0.09, T:0.54
Consensus pattern (50 bp):
TTTAGATATGATATTTTAAATAAATATAAATATTTATTTAACTTGATTTG
Found at i:7992960 original size:20 final size:20
Alignment explanation
Indices: 7992930--7992974 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
7992920 CTGTTTTGTT
*
7992930 ATGGG-CCAACTGTATTGAA
1 ATGGGCCCAACTGTACTGAA
*
7992949 ATGGGCCCAACTGTACTGAT
1 ATGGGCCCAACTGTACTGAA
7992969 ATGGGC
1 ATGGGC
7992975 TAGGCCCAGT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 5 0.22
20 18 0.78
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (20 bp):
ATGGGCCCAACTGTACTGAA
Found at i:7997072 original size:14 final size:15
Alignment explanation
Indices: 7997034--7997074 Score: 59
Period size: 14 Copynumber: 2.9 Consensus size: 15
7997024 ACCTAACACT
7997034 TAACCCTT-AACCCC
1 TAACCCTTAAACCCC
*
7997048 TAAGCCTTAAACCCC
1 TAACCCTTAAACCCC
7997063 -AACCCTTAAACC
1 TAACCCTTAAACC
7997075 ATAAACTATA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 18 0.75
15 6 0.25
ACGTcount: A:0.34, C:0.44, G:0.02, T:0.20
Consensus pattern (15 bp):
TAACCCTTAAACCCC
Found at i:7997102 original size:15 final size:15
Alignment explanation
Indices: 7997063--7997110 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
7997053 CTTAAACCCC
* *
7997063 AACCCTTAAACCATA
1 AACCCATAATCCATA
* *
7997078 AA-CTATAATCCCTA
1 AACCCATAATCCATA
7997092 AACCCATAATCCATA
1 AACCCATAATCCATA
7997107 AACC
1 AACC
7997111 TTAAAATAGT
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
14 10 0.38
15 16 0.62
ACGTcount: A:0.46, C:0.33, G:0.00, T:0.21
Consensus pattern (15 bp):
AACCCATAATCCATA
Found at i:7997115 original size:22 final size:21
Alignment explanation
Indices: 7997066--7997115 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 21
7997056 AAACCCCAAC
* *
7997066 CCTTAAACCATAAACTATAAT
1 CCTTAAACCATAAACCATAAA
* *
7997087 CCCTAAACCCATAATCCATAAA
1 CCTTAAA-CCATAAACCATAAA
7997109 CCTTAAA
1 CCTTAAA
7997116 ATAGTAACTC
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
21 6 0.26
22 17 0.74
ACGTcount: A:0.46, C:0.30, G:0.00, T:0.24
Consensus pattern (21 bp):
CCTTAAACCATAAACCATAAA
Found at i:7997170 original size:14 final size:14
Alignment explanation
Indices: 7997134--7997172 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
7997124 TCATACACTT
*
7997134 TAAACTCTAAATCA
1 TAAACCCTAAATCA
* *
7997148 TATATCCTAAATCA
1 TAAACCCTAAATCA
7997162 TAAACCCTAAA
1 TAAACCCTAAA
7997173 CTATAATGAT
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.49, C:0.23, G:0.00, T:0.28
Consensus pattern (14 bp):
TAAACCCTAAATCA
Found at i:7997741 original size:40 final size:40
Alignment explanation
Indices: 7997685--7997784 Score: 123
Period size: 40 Copynumber: 2.5 Consensus size: 40
7997675 TTTGAGGCAA
* *
7997685 TTTTCAAAAAATGCCGCTAAAGATCGAACAT-TAGCAGCGT
1 TTTTAAAAAAACGCCGCTAAAGAT-GAACATATAGCAGCGT
* * *
7997725 TTTCT-AAAAAGCGCCGCTAAAGGTGTACATATAGCAGCGT
1 TTT-TAAAAAAACGCCGCTAAAGATGAACATATAGCAGCGT
7997765 TTTTAAAAAAACGCCGCTAA
1 TTTTAAAAAAACGCCGCTAA
7997785 TACTTGATCT
Statistics
Matches: 52, Mismatches: 5, Indels: 6
0.83 0.08 0.10
Matches are distributed among these distances:
39 6 0.12
40 45 0.87
41 1 0.02
ACGTcount: A:0.37, C:0.20, G:0.18, T:0.25
Consensus pattern (40 bp):
TTTTAAAAAAACGCCGCTAAAGATGAACATATAGCAGCGT
Found at i:7997916 original size:40 final size:40
Alignment explanation
Indices: 7997856--7997959 Score: 131
Period size: 40 Copynumber: 2.6 Consensus size: 40
7997846 ATTTTTTGCA
* *
7997856 GCGTTTTTTGTAAAGCGCCGCTAAAGATCGAGCAT-TAGCG
1 GCGTTTTTTGAAAAGCGCCGCTAAAGAT-GAACATATAGCG
* * *
7997896 GCGTTTTTTGAAAAGTGCCGCTAAAGGTGAACTTATAGCG
1 GCGTTTTTTGAAAAGCGCCGCTAAAGATGAACATATAGCG
7997936 GCGTTTTTT-AATAAGCGCCGCTAA
1 GCGTTTTTTGAA-AAGCGCCGCTAA
7997960 TGCTCATTTT
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
39 6 0.11
40 50 0.89
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (40 bp):
GCGTTTTTTGAAAAGCGCCGCTAAAGATGAACATATAGCG
Found at i:7999172 original size:24 final size:24
Alignment explanation
Indices: 7999138--7999197 Score: 102
Period size: 24 Copynumber: 2.5 Consensus size: 24
7999128 CTGTCAGGAG
*
7999138 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGCGAT
*
7999162 ATGATTTAGGAGTTGATAAGCGAT
1 AGGATTTAGGAGTTGATAAGCGAT
7999186 AGGATTTAGGAG
1 AGGATTTAGGAG
7999198 CAGCTAAAGG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.33, C:0.02, G:0.35, T:0.30
Consensus pattern (24 bp):
AGGATTTAGGAGTTGATAAGCGAT
Found at i:8000639 original size:27 final size:27
Alignment explanation
Indices: 8000599--8000710 Score: 138
Period size: 27 Copynumber: 4.1 Consensus size: 27
8000589 AGGAAGCGTC
*
8000599 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
8000626 CTGGTGGCTCTGCCACATATT-TCTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
*
8000653 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* * *
8000681 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
8000707 CTGG
1 CTGG
8000711 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
26 8 0.11
27 49 0.65
28 18 0.24
ACGTcount: A:0.15, C:0.24, G:0.23, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:8000705 original size:54 final size:54
Alignment explanation
Indices: 8000599--8000710 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
8000589 AGGAAGCGTC
* *
8000599 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * *
8000653 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
8000707 CTGG
1 CTGG
8000711 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.15, C:0.24, G:0.23, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:8001784 original size:11 final size:10
Alignment explanation
Indices: 8001756--8001789 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
8001746 AGCCTGTAAG
8001756 TATTCTGAAT
1 TATTCTGAAT
*
8001766 TTTTCTGAAT
1 TATTCTGAAT
8001776 ATATTCTGAAT
1 -TATTCTGAAT
8001787 TAT
1 TAT
8001790 CTGTCTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:8006924 original size:24 final size:24
Alignment explanation
Indices: 8006892--8006960 Score: 120
Period size: 24 Copynumber: 2.9 Consensus size: 24
8006882 TCTGTCAGGA
8006892 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
8006916 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
**
8006940 AGGATTTAGGAGCAGATAAGG
1 AGGATTTAGGAGTTGATAAGG
8006961 AGGAATCTAG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 43 1.00
ACGTcount: A:0.35, C:0.01, G:0.38, T:0.26
Consensus pattern (24 bp):
AGGATTTAGGAGTTGATAAGGGAT
Found at i:8008208 original size:27 final size:28
Alignment explanation
Indices: 8008178--8008236 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 28
8008168 TATGCATGAA
*
8008178 ACCCTAAAGTA-GCTAAATTACCATAAT
1 ACCCTAAAGTATGCAAAATTACCATAAT
* * * *
8008205 ACCCTTATGTATGGAAAATTACCATGAT
1 ACCCTAAAGTATGCAAAATTACCATAAT
8008233 ACCC
1 ACCC
8008237 CTAGGTGTAA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
27 9 0.35
28 17 0.65
ACGTcount: A:0.39, C:0.24, G:0.10, T:0.27
Consensus pattern (28 bp):
ACCCTAAAGTATGCAAAATTACCATAAT
Found at i:8008407 original size:27 final size:27
Alignment explanation
Indices: 8008367--8008478 Score: 138
Period size: 27 Copynumber: 4.1 Consensus size: 27
8008357 AGGAAGCGTC
*
8008367 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
8008394 CTGGTGGCTCTGCCACATATT-TCTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
*
8008421 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* * *
8008449 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
8008475 CTGG
1 CTGG
8008479 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
26 8 0.11
27 49 0.65
28 18 0.24
ACGTcount: A:0.15, C:0.24, G:0.23, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:8008473 original size:54 final size:54
Alignment explanation
Indices: 8008367--8008478 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
8008357 AGGAAGCGTC
* *
8008367 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * *
8008421 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
8008475 CTGG
1 CTGG
8008479 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.15, C:0.24, G:0.23, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:8014721 original size:24 final size:24
Alignment explanation
Indices: 8014689--8014748 Score: 111
Period size: 24 Copynumber: 2.5 Consensus size: 24
8014679 CTGTCAGGAA
8014689 AGGATTTAGGAGTTAATAAGGGAT
1 AGGATTTAGGAGTTAATAAGGGAT
*
8014713 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTAATAAGGGAT
8014737 AGGATTTAGGAG
1 AGGATTTAGGAG
8014749 CAGATAAAGG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.35, C:0.00, G:0.37, T:0.28
Consensus pattern (24 bp):
AGGATTTAGGAGTTAATAAGGGAT
Found at i:8014754 original size:24 final size:24
Alignment explanation
Indices: 8014689--8014755 Score: 100
Period size: 24 Copynumber: 2.8 Consensus size: 24
8014679 CTGTCAGGAA
8014689 AGGATTTAGGAGTTA-ATAAGGGAT
1 AGGATTTAGGAG-TAGATAAGGGAT
*
8014713 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTAGATAAGGGAT
*
8014737 AGGATTTAGGAGCAGATAA
1 AGGATTTAGGAGTAGATAA
8014756 AGGAGGAGAT
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
23 1 0.03
24 38 0.97
ACGTcount: A:0.37, C:0.01, G:0.34, T:0.27
Consensus pattern (24 bp):
AGGATTTAGGAGTAGATAAGGGAT
Found at i:8016214 original size:27 final size:27
Alignment explanation
Indices: 8016174--8016285 Score: 138
Period size: 27 Copynumber: 4.1 Consensus size: 27
8016164 AGGATGCGTC
*
8016174 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
8016201 CTGGTGGCTCTGCCACATATT-TCTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
*
8016228 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* * *
8016256 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
8016282 CTGG
1 CTGG
8016286 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
26 8 0.11
27 49 0.65
28 18 0.24
ACGTcount: A:0.15, C:0.24, G:0.23, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:8016280 original size:54 final size:54
Alignment explanation
Indices: 8016174--8016285 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
8016164 AGGATGCGTC
* *
8016174 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * *
8016228 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
8016282 CTGG
1 CTGG
8016286 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.15, C:0.24, G:0.23, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:8018029 original size:20 final size:21
Alignment explanation
Indices: 8018004--8018043 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
8017994 AAAACCATTT
*
8018004 ATTCAACCA-ATCTAAAACAC
1 ATTCAAACACATCTAAAACAC
*
8018024 ATTCAAATACATCTAAAACA
1 ATTCAAACACATCTAAAACA
8018044 TGTTAAAACA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.53, C:0.25, G:0.00, T:0.23
Consensus pattern (21 bp):
ATTCAAACACATCTAAAACAC
Found at i:8021626 original size:19 final size:17
Alignment explanation
Indices: 8021590--8021623 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
8021580 ATAAGTAAAT
8021590 ATATATAATTTAATTTA
1 ATATATAATTTAATTTA
*
8021607 ATATATGAATTTTATTT
1 ATATAT-AATTTAATTT
8021624 TAACACATGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (17 bp):
ATATATAATTTAATTTA
Found at i:8023431 original size:13 final size:13
Alignment explanation
Indices: 8023409--8023449 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
8023399 TTTTAAAGAT
8023409 TATA-TTTTATTA
1 TATATTTTTATTA
8023421 TATATTTTTATTA
1 TATATTTTTATTA
*
8023434 T-TATTATTTTTTA
1 TATATT-TTTATTA
8023447 TAT
1 TAT
8023450 CTTATACATA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
12 8 0.32
13 16 0.64
14 1 0.04
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (13 bp):
TATATTTTTATTA
Found at i:8023436 original size:16 final size:15
Alignment explanation
Indices: 8023407--8023444 Score: 53
Period size: 13 Copynumber: 2.6 Consensus size: 15
8023397 TGTTTTAAAG
8023407 ATTATATTTTATTA-T
1 ATTAT-TTTTATTATT
8023422 A-TATTTTTATTATT
1 ATTATTTTTATTATT
8023436 ATTATTTTT
1 ATTATTTTT
8023445 TATATCTTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
13 8 0.38
14 5 0.24
15 8 0.38
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (15 bp):
ATTATTTTTATTATT
Found at i:8024323 original size:128 final size:129
Alignment explanation
Indices: 8024079--8024327 Score: 421
Period size: 128 Copynumber: 1.9 Consensus size: 129
8024069 TTTGAAGATT
**
8024079 CACTAAAATAAAGGCAATATTCGATGTTTGGAAATTCGGGGAATAGTGCCCTATCGTGCTGGGTT
1 CACTAAAATAAAGGCAATATTCGATGTTTGGAAATTCCAGGAATAGTGCCCTATCGTGCTGGGTT
* *
8024144 TCTATTTCCCGTTTGTTCAAAATAATCGAATATTCCTTTAGGATTTTACTCGTGTTCTTCCAAA
66 TCGATTTCCCGTTTGTTCAAAATAATCGAATATTCCTTTAGGATTTCACTCGTGTTCTTCCAAA
* *
8024208 CACTAAAA-CAAGGCAATATTTGATGTTTGGAAATTCCAGGAATAGTGCCCTATCGTGCTGGGTT
1 CACTAAAATAAAGGCAATATTCGATGTTTGGAAATTCCAGGAATAGTGCCCTATCGTGCTGGGTT
8024272 TCGATTTCCCGTTTGTTCAAAATAATCGAATATTCCTTT-GGAATTTCACTCGTGTT
66 TCGATTTCCCGTTTGTTCAAAATAATCGAATATTCCTTTAGG-ATTTCACTCGTGTT
8024328 TTCTAAAGCG
Statistics
Matches: 113, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
127 2 0.02
128 103 0.91
129 8 0.07
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.36
Consensus pattern (129 bp):
CACTAAAATAAAGGCAATATTCGATGTTTGGAAATTCCAGGAATAGTGCCCTATCGTGCTGGGTT
TCGATTTCCCGTTTGTTCAAAATAATCGAATATTCCTTTAGGATTTCACTCGTGTTCTTCCAAA
Found at i:8026123 original size:17 final size:17
Alignment explanation
Indices: 8026098--8026133 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
8026088 CTTATTTGGT
* *
8026098 TTTGTTGTTTGCTGTAA
1 TTTGCTGTTTGCTGCAA
8026115 TTTGCTGTTTGCTGCAA
1 TTTGCTGTTTGCTGCAA
8026132 TT
1 TT
8026134 AATTAGTTGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.11, C:0.11, G:0.22, T:0.56
Consensus pattern (17 bp):
TTTGCTGTTTGCTGCAA
Found at i:8030174 original size:21 final size:21
Alignment explanation
Indices: 8030116--8030181 Score: 69
Period size: 21 Copynumber: 3.0 Consensus size: 21
8030106 GTCTTGAATT
*
8030116 TGTTAGATATTAAATTTATTA
1 TGTTAGATATTGAATTTATTA
* *
8030137 TGTTTTAAGCTTGTTGAATTTATTA
1 TG--TT-AG-ATATTGAATTTATTA
8030162 TGTTAGATATTGAATTTATT
1 TGTTAGATATTGAATTTATT
8030182 TGGTTGGACA
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
21 14 0.39
22 2 0.06
23 4 0.11
24 2 0.06
25 14 0.39
ACGTcount: A:0.30, C:0.02, G:0.14, T:0.55
Consensus pattern (21 bp):
TGTTAGATATTGAATTTATTA
Found at i:8031473 original size:29 final size:30
Alignment explanation
Indices: 8031425--8031495 Score: 103
Period size: 29 Copynumber: 2.5 Consensus size: 30
8031415 AAATCATTAC
*
8031425 AATATATGT--AAAAACAATTTAAAGTATA
1 AATATATGTAAAAAAACAATTTAAAATATA
*
8031453 AATTTAT-TAAAAAAACAATTTAAAATATA
1 AATATATGTAAAAAAACAATTTAAAATATA
8031482 AATATATGTAAAAA
1 AATATATGTAAAAA
8031496 CAGCTTTTTC
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
27 1 0.03
28 6 0.16
29 24 0.65
30 6 0.16
ACGTcount: A:0.61, C:0.03, G:0.04, T:0.32
Consensus pattern (30 bp):
AATATATGTAAAAAAACAATTTAAAATATA
Found at i:8033280 original size:13 final size:11
Alignment explanation
Indices: 8033249--8033279 Score: 53
Period size: 11 Copynumber: 2.7 Consensus size: 11
8033239 ATATTTCTTT
8033249 TATTTTTTAAA
1 TATTTTTTAAA
8033260 TATTTTTTAAA
1 TATTTTTTAAA
8033271 TATATTTTT
1 TAT-TTTTT
8033280 TTTAACTGGG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 14 0.74
12 5 0.26
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (11 bp):
TATTTTTTAAA
Found at i:8044517 original size:21 final size:22
Alignment explanation
Indices: 8044491--8044531 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
8044481 CACTTGACAT
8044491 AGGGGC-ACACGCCCGTGTGGG
1 AGGGGCAACACGCCCGTGTGGG
*
8044512 AGGGGCAATACGCCCGTGTG
1 AGGGGCAACACGCCCGTGTG
8044532 AGCATTCCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.17, C:0.27, G:0.44, T:0.12
Consensus pattern (22 bp):
AGGGGCAACACGCCCGTGTGGG
Found at i:8045819 original size:47 final size:49
Alignment explanation
Indices: 8045746--8046017 Score: 225
Period size: 46 Copynumber: 5.8 Consensus size: 49
8045736 ACGATAAGGT
* *
8045746 GCCGATGCCATGTCCTAGACACGGTCTTACACTGGCTCAT-ATCTC-AA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCGAA
** * *
8045793 GTTGATGCCATGTCCCAGGCATGGTCTTACACTGACT-ATCATCTCGTAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCG-AA
* * * * *
8045842 -CCGATG-CAGGTCCTAGACAT-GTCTTACACTGGCTTA-CGTCTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCGAA
* * * *
8045887 GCCAATG-CATGTCCCAAACAT-GTCTTACACTAGC-CCTCATCTC-AA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCGAA
* * *
8045932 TGTCGATGCCATGTTCCAGACATGGTCTTACACTGGCTC-TCATAATACG--
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCAT-CT-CGAA
*
8045981 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCA
8046018 CACACGAATG
Statistics
Matches: 179, Mismatches: 32, Indels: 28
0.75 0.13 0.12
Matches are distributed among these distances:
45 2 0.01
46 73 0.41
47 73 0.41
48 26 0.15
49 4 0.02
50 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (49 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCGAA
Found at i:8045965 original size:48 final size:46
Alignment explanation
Indices: 8045885--8046014 Score: 145
Period size: 47 Copynumber: 2.8 Consensus size: 46
8045875 TTACGTCTCG
* * *
8045885 AGGCCAATGCATGTCCCAAACATGTCTTACACTAGCCCTCAT-CTCA
1 AGGCCGATGCATGTCCCAGACATGTCTTACACTAGCCCTCATAAT-A
* * * * *
8045931 ATGTCGATGCCATGTTCCAGACATGGTCTTACACTGGCTCTCATAATA
1 AGGCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCCCTCATAATA
*
8045979 CGGCCGATGCATGTCCCAGACATGTCTTACACTAGC
1 AGGCCGATGCATGTCCCAGACATGTCTTACACTAGC
8046015 TCACACACGA
Statistics
Matches: 68, Mismatches: 13, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
46 18 0.26
47 25 0.37
48 24 0.35
49 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.26
Consensus pattern (46 bp):
AGGCCGATGCATGTCCCAGACATGTCTTACACTAGCCCTCATAATA
Found at i:8052645 original size:17 final size:17
Alignment explanation
Indices: 8052628--8052660 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
8052618 ATAATATTAT
8052628 TTTAATAT-ATTTAATA
1 TTTAATATAATTTAATA
*
8052644 TTTAATTTAATTTAATA
1 TTTAATATAATTTAATA
8052661 CTTATCTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (17 bp):
TTTAATATAATTTAATA
Found at i:8058492 original size:27 final size:27
Alignment explanation
Indices: 8058427--8058493 Score: 91
Period size: 27 Copynumber: 2.5 Consensus size: 27
8058417 CCTTTCTTTG
* *
8058427 AGGCGCAAATGATTGTGCCTACCTCAG
1 AGGCGCAAATGGTTGTGCCTACCTCAA
*
8058454 AGGTGCAAATGGTTGTGCCTATCC-CAA
1 AGGCGCAAATGGTTGTGCCTA-CCTCAA
8058481 AGGCGCAAATGGT
1 AGGCGCAAATGGT
8058494 GGGGCCCACA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 33 0.94
28 2 0.06
ACGTcount: A:0.27, C:0.22, G:0.28, T:0.22
Consensus pattern (27 bp):
AGGCGCAAATGGTTGTGCCTACCTCAA
Found at i:8061797 original size:73 final size:73
Alignment explanation
Indices: 8061649--8061788 Score: 176
Period size: 73 Copynumber: 1.9 Consensus size: 73
8061639 AAAAACCATA
* *
8061649 AAATTGATAAATAAAATGGCAAAAAAGTCATTACATAAATATAAAGTTAACTATTTAAATTACAA
1 AAATTGATAAATAAAATGCCAAAAAAGTCATTACATAAATATAAAGTGAACTATTTAAATTACAA
8061714 AAAAAATT
66 AAAAAATT
* * * * * *
8061722 AAATTGTTAATTAAAATGCCAAAATATTCATTACATAAATA-AATA-TGAAGTTATTTATATTAC
1 AAATTGATAAATAAAATGCCAAAAAAGTCATTACATAAATATAA-AGTGAA-CTATTTAAATTAC
8061785 AAAA
64 AAAA
8061789 CCCCTTAAAA
Statistics
Matches: 57, Mismatches: 8, Indels: 4
0.83 0.12 0.06
Matches are distributed among these distances:
72 5 0.09
73 52 0.91
ACGTcount: A:0.54, C:0.07, G:0.06, T:0.32
Consensus pattern (73 bp):
AAATTGATAAATAAAATGCCAAAAAAGTCATTACATAAATATAAAGTGAACTATTTAAATTACAA
AAAAAATT
Found at i:8061973 original size:69 final size:69
Alignment explanation
Indices: 8061862--8061999 Score: 240
Period size: 69 Copynumber: 2.0 Consensus size: 69
8061852 CACGTTGAGG
* *
8061862 GCGATTACGACAATCAACATTCTCTTCATCCTTATGTGGGGGTGTGTGAAACATAGATGAAAAAT
1 GCGATTACGACAATCAACATTCTCTTCATCCGTATGTGGGGGTGTGCGAAACATAGATGAAAAAT
8061927 CATA
66 CATA
* *
8061931 GCGATTACGACGATCAACATTCTCTTTATCCGTATGTGGGGGTGTGCGAAACATAGATGAAAAAT
1 GCGATTACGACAATCAACATTCTCTTCATCCGTATGTGGGGGTGTGCGAAACATAGATGAAAAAT
8061996 CATA
66 CATA
8062000 TGTCTCAAAC
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
69 65 1.00
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (69 bp):
GCGATTACGACAATCAACATTCTCTTCATCCGTATGTGGGGGTGTGCGAAACATAGATGAAAAAT
CATA
Found at i:8062073 original size:33 final size:33
Alignment explanation
Indices: 8062029--8062108 Score: 97
Period size: 33 Copynumber: 2.4 Consensus size: 33
8062019 GAACTTGAGT
* * * *
8062029 CGGGAGAAGTGGAGTACGGTGATTGATATGGGC
1 CGGGAGGAGTGGAGTACGGCGATGGATACGGGC
*
8062062 CGGGAGGAGTGGAGTATGGCGATGGATACGGGC
1 CGGGAGGAGTGGAGTACGGCGATGGATACGGGC
* *
8062095 CAGAAGGAGTGGAG
1 CGGGAGGAGTGGAG
8062109 CACTGAGGTG
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 40 1.00
ACGTcount: A:0.25, C:0.10, G:0.49, T:0.16
Consensus pattern (33 bp):
CGGGAGGAGTGGAGTACGGCGATGGATACGGGC
Found at i:8065576 original size:9 final size:9
Alignment explanation
Indices: 8065562--8065669 Score: 67
Period size: 9 Copynumber: 11.3 Consensus size: 9
8065552 ACATTACCTT
*
8065562 TTTTTTTTC
1 TTTTTCTTC
8065571 TTTTTTCTTTC
1 -TTTTTC-TTC
*
8065582 TTCTTCTTC
1 TTTTTCTTC
*
8065591 TTCTTCTTC
1 TTTTTCTTC
*
8065600 TTCTTCTTC
1 TTTTTCTTC
8065609 -TTTTCTTC
1 TTTTTCTTC
8065617 TTCTTCTCTTC
1 TT-TT-TCTTC
* *
8065628 GTCTTCTT-
1 TTTTTCTTC
8065636 TTTTTCTTC
1 TTTTTCTTC
*
8065645 TCCTTTCTCTTT
1 T--TTT-TCTTC
8065657 TTTTTCTCTC
1 TTTTTCT-TC
8065667 TTT
1 TTT
8065670 CGGTGTGTGG
Statistics
Matches: 80, Mismatches: 9, Indels: 18
0.75 0.08 0.17
Matches are distributed among these distances:
8 13 0.16
9 30 0.38
10 20 0.25
11 12 0.15
12 5 0.06
ACGTcount: A:0.00, C:0.27, G:0.01, T:0.72
Consensus pattern (9 bp):
TTTTTCTTC
Found at i:8065585 original size:3 final size:3
Alignment explanation
Indices: 8065579--8065645 Score: 95
Period size: 3 Copynumber: 23.3 Consensus size: 3
8065569 TCTTTTTTCT
8065579 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT- TTC TTC TTC TTC -TC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
* *
8065625 TTC GTC TTC TT- TTT TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC T
8065646 CCTTTCTCTT
Statistics
Matches: 58, Mismatches: 3, Indels: 6
0.87 0.04 0.09
Matches are distributed among these distances:
2 6 0.10
3 52 0.90
ACGTcount: A:0.00, C:0.30, G:0.01, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:8065643 original size:11 final size:11
Alignment explanation
Indices: 8065563--8065645 Score: 69
Period size: 12 Copynumber: 7.1 Consensus size: 11
8065553 CATTACCTTT
8065563 TTTTTTTCTT-
1 TTTTTTTCTTC
8065573 TTTTCTTTCTTC
1 TTTT-TTTCTTC
*
8065585 TTCTTCTTCTTC
1 TT-TTTTTCTTC
*
8065597 TTCTTCTTCTTC
1 TT-TTTTTCTTC
*
8065609 TTTTCTTCTTC
1 TTTTTTTCTTC
*
8065620 TTCTCTTCGTCTTC
1 TT-T-TT-TTCTTC
8065634 TTTTTTTCTTC
1 TTTTTTTCTTC
8065645 T
1 T
8065646 CCTTTCTCTT
Statistics
Matches: 63, Mismatches: 4, Indels: 11
0.81 0.05 0.14
Matches are distributed among these distances:
10 4 0.06
11 23 0.37
12 25 0.40
13 4 0.06
14 7 0.11
ACGTcount: A:0.00, C:0.27, G:0.01, T:0.72
Consensus pattern (11 bp):
TTTTTTTCTTC
Found at i:8065643 original size:17 final size:17
Alignment explanation
Indices: 8065563--8065668 Score: 76
Period size: 18 Copynumber: 5.9 Consensus size: 17
8065553 CATTACCTTT
8065563 TTTTTTTCTT-TT-TTC
1 TTTTTTTCTTCTTCTTC
8065578 TTTCTTCTTCTTCTTCTTC
1 TTT-TT-TTCTTCTTCTTC
*
8065597 TTCTTCTTCTTCTT-TTC
1 TT-TTTTTCTTCTTCTTC
*
8065614 TTCTTCTTCTCTTCGTCTTC
1 TT-TT-TT-TCTTCTTCTTC
*
8065634 TTTTTTTCTTCTCCTTTC
1 TTTTTTTCTTCTTC-TTC
8065652 TCTTTTTT-TTCTCTCTT
1 T-TTTTTTCTTCT-TCTT
8065669 TCGGTGTGTG
Statistics
Matches: 74, Mismatches: 6, Indels: 19
0.75 0.06 0.19
Matches are distributed among these distances:
15 3 0.04
16 2 0.03
17 19 0.26
18 23 0.31
19 21 0.28
20 6 0.08
ACGTcount: A:0.00, C:0.27, G:0.01, T:0.72
Consensus pattern (17 bp):
TTTTTTTCTTCTTCTTC
Found at i:8065650 original size:14 final size:14
Alignment explanation
Indices: 8065582--8065645 Score: 92
Period size: 14 Copynumber: 4.5 Consensus size: 14
8065572 TTTTTCTTTC
8065582 TTCTTCTTCTTCTT
1 TTCTTCTTCTTCTT
8065596 CTTCTTCTTCTTCTT
1 -TTCTTCTTCTTCTT
*
8065611 TTCTTCTTCTTCTC
1 TTCTTCTTCTTCTT
* *
8065625 TTCGTCTTCTTTTT
1 TTCTTCTTCTTCTT
8065639 TTCTTCT
1 TTCTTCT
8065646 CCTTTCTCTT
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
14 30 0.68
15 14 0.32
ACGTcount: A:0.00, C:0.30, G:0.02, T:0.69
Consensus pattern (14 bp):
TTCTTCTTCTTCTT
Found at i:8066005 original size:27 final size:29
Alignment explanation
Indices: 8065975--8066034 Score: 74
Period size: 27 Copynumber: 2.2 Consensus size: 29
8065965 TATATTTTTA
8065975 AATATTTTTA-ATAAAAATA-AAAAAAA-T
1 AATATTTTTATATAAAAA-ACAAAAAAATT
*
8066002 AATA-TTTTATTTAAAAAACAAAAAAATT
1 AATATTTTTATATAAAAAACAAAAAAATT
8066030 AATAT
1 AATAT
8066035 AAAATAATCA
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
26 6 0.21
27 17 0.61
28 5 0.18
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (29 bp):
AATATTTTTATATAAAAAACAAAAAAATT
Found at i:8066689 original size:32 final size:31
Alignment explanation
Indices: 8066640--8066703 Score: 76
Period size: 32 Copynumber: 2.0 Consensus size: 31
8066630 CACTAAGACA
* *
8066640 GAAAAATAATAAGAATAAATAGTAAT-ATAAT
1 GAAAAATAAGAACAAT-AATAGTAATAATAAT
*
8066671 GAAAGAATAAGAACAATAATATTAATAATAAT
1 GAAA-AATAAGAACAATAATAGTAATAATAAT
8066703 G
1 G
8066704 TAATAACTGA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
31 12 0.43
32 16 0.57
ACGTcount: A:0.62, C:0.02, G:0.11, T:0.25
Consensus pattern (31 bp):
GAAAAATAAGAACAATAATAGTAATAATAAT
Found at i:8066882 original size:34 final size:36
Alignment explanation
Indices: 8066823--8066889 Score: 93
Period size: 34 Copynumber: 1.9 Consensus size: 36
8066813 GTGCTGTGGT
8066823 GGAAGGGGAAAAAGAAGGAAAAAGAAAAGAGAGAAG
1 GGAAGGGGAAAAAGAAGGAAAAAGAAAAGAGAGAAG
* * *
8066859 GGAAGGTG-AAAAG-AGGAAGAAGAAATGAGAG
1 GGAAGGGGAAAAAGAAGGAAAAAGAAAAGAGAG
8066890 TTGAAGAGTG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
34 16 0.57
35 5 0.18
36 7 0.25
ACGTcount: A:0.57, C:0.00, G:0.40, T:0.03
Consensus pattern (36 bp):
GGAAGGGGAAAAAGAAGGAAAAAGAAAAGAGAGAAG
Found at i:8070267 original size:55 final size:55
Alignment explanation
Indices: 8070206--8070332 Score: 184
Period size: 55 Copynumber: 2.3 Consensus size: 55
8070196 GGCACTGGCA
* *
8070206 TGTCGCACACCCGTGTTGAATTCTCAGTTTCAACCACTGCTTCAAGACACGGGCG
1 TGTCGCACACCCGTGTTAAATTCTCAATTTCAACCACTGCTTCAAGACACGGGCG
* * * *
8070261 TGTCGCACGCTCATGTTAAATTCTCAATTTCAACTACTGCTTCAAGACACGGGCG
1 TGTCGCACACCCGTGTTAAATTCTCAATTTCAACCACTGCTTCAAGACACGGGCG
8070316 TGT-GACACACCCGTGTT
1 TGTCG-CACACCCGTGTT
8070333 TTTTGACAAG
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 1 0.02
55 61 0.98
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (55 bp):
TGTCGCACACCCGTGTTAAATTCTCAATTTCAACCACTGCTTCAAGACACGGGCG
Found at i:8078860 original size:2 final size:2
Alignment explanation
Indices: 8078853--8078887 Score: 54
Period size: 2 Copynumber: 17.5 Consensus size: 2
8078843 ATTCATCTAC
8078853 TA TA TA TA TA TA TA TA TA TA TA TA T- TCA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA TA TA T
8078888 TTTCCCTCCT
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
1 1 0.03
2 29 0.94
3 1 0.03
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:8080241 original size:23 final size:23
Alignment explanation
Indices: 8080209--8080252 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
8080199 ACTACCATTT
8080209 TCTAAATAAAATAATAATAAATA
1 TCTAAATAAAATAATAATAAATA
* *
8080232 TCTAAGTAAAATATTAATAAA
1 TCTAAATAAAATAATAATAAA
8080253 ATAATATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.61, C:0.05, G:0.02, T:0.32
Consensus pattern (23 bp):
TCTAAATAAAATAATAATAAATA
Found at i:8080245 original size:13 final size:11
Alignment explanation
Indices: 8080213--8080255 Score: 52
Period size: 11 Copynumber: 3.8 Consensus size: 11
8080203 CCATTTTCTA
*
8080213 AATAAAATAAT
1 AATAAAATATT
8080224 AAT-AAATATCT
1 AATAAAATAT-T
8080235 AAGTAAAATATT
1 AA-TAAAATATT
8080247 AATAAAATA
1 AATAAAATA
8080256 ATATTTAACT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
10 5 0.18
11 13 0.46
12 4 0.14
13 6 0.21
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.30
Consensus pattern (11 bp):
AATAAAATATT
Found at i:8082062 original size:135 final size:134
Alignment explanation
Indices: 8081821--8082073 Score: 335
Period size: 135 Copynumber: 1.9 Consensus size: 134
8081811 CCCTTAGCCG
* * * *
8081821 TTTCTACATCTTTGGTAGCCTATTCAAATCTCCGGTAGGAGATCTTGGTAGGTTTTGTTGATTTA
1 TTTCTACATCTTTGATAGCCTACTCAAATCTCCGGTAGGAGATCTCGGTAGGTTTTGTTAATTTA
*** * * *
8081886 ATCTTTAGTTTGGTAGTTTGTTAGGGTAACTAATTGTTTGGTTGTGGAACAGTAAGCTATTATTA
66 ATCTTTAGTTCAATAGTTTGTTAAGGTAACCAATTATTTGGTTGTGGAACAGTAAGCTATTATTA
8081951 ACCA
131 ACCA
* * * * *
8081955 TTTCTACGTCTTTGATAGCGTACTCGAATCTTCGGTAGGAGATCTCGAGTATGTTTTGTTAATTT
1 TTTCTACATCTTTGATAGCCTACTCAAATCTCCGGTAGGAGATCTCG-GTAGGTTTTGTTAATTT
* * *
8082020 ATTCTTTAGTTCAATAGTTTGTTAAGGTGACCAGTTATTTGGTTGTGGAACAGT
65 AATCTTTAGTTCAATAGTTTGTTAAGGTAACCAATTATTTGGTTGTGGAACAGT
8082074 TGGTCACTAG
Statistics
Matches: 100, Mismatches: 18, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
134 40 0.40
135 60 0.60
ACGTcount: A:0.23, C:0.12, G:0.23, T:0.43
Consensus pattern (134 bp):
TTTCTACATCTTTGATAGCCTACTCAAATCTCCGGTAGGAGATCTCGGTAGGTTTTGTTAATTTA
ATCTTTAGTTCAATAGTTTGTTAAGGTAACCAATTATTTGGTTGTGGAACAGTAAGCTATTATTA
ACCA
Found at i:8091290 original size:15 final size:14
Alignment explanation
Indices: 8091270--8091300 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
8091260 TAAAATTTCA
8091270 TGTTTTTAATTATTT
1 TGTTTTTAATT-TTT
8091285 TGTTTTTAATTTTT
1 TGTTTTTAATTTTT
8091299 TG
1 TG
8091301 ATAATTCATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.31
15 11 0.69
ACGTcount: A:0.16, C:0.00, G:0.10, T:0.74
Consensus pattern (14 bp):
TGTTTTTAATTTTT
Found at i:8093914 original size:23 final size:23
Alignment explanation
Indices: 8093875--8093945 Score: 64
Period size: 21 Copynumber: 3.3 Consensus size: 23
8093865 GATATTAAAA
*
8093875 ATATATACATAA-A-AATATAAT
1 ATATATATATAATATAATATAAT
8093896 ATATATATATAATATAATAT-AT
1 ATATATATATAATATAATATAAT
* *
8093918 ACATA-ATATAGTATTAA-A-AAT
1 ATATATATATAATA-TAATATAAT
8093939 ATATATA
1 ATATATA
8093946 ATACATACAC
Statistics
Matches: 41, Mismatches: 4, Indels: 9
0.76 0.07 0.17
Matches are distributed among these distances:
21 25 0.61
22 11 0.27
23 5 0.12
ACGTcount: A:0.58, C:0.03, G:0.01, T:0.38
Consensus pattern (23 bp):
ATATATATATAATATAATATAAT
Found at i:8093917 original size:16 final size:16
Alignment explanation
Indices: 8093896--8093952 Score: 57
Period size: 16 Copynumber: 3.7 Consensus size: 16
8093886 AAAATATAAT
*
8093896 ATATATATATAATATA
1 ATATATACATAATATA
8093912 ATATATACATAATATA
1 ATATATACATAATATA
* *
8093928 GTAT-TA-AAAATAT-
1 ATATATACATAATATA
8093941 ATATAATACATA
1 ATAT-ATACATA
8093953 CACATTAGAA
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
13 3 0.09
14 6 0.18
15 4 0.12
16 20 0.61
ACGTcount: A:0.56, C:0.04, G:0.02, T:0.39
Consensus pattern (16 bp):
ATATATACATAATATA
Found at i:8094024 original size:10 final size:10
Alignment explanation
Indices: 8094011--8094066 Score: 67
Period size: 10 Copynumber: 5.6 Consensus size: 10
8094001 CTTCATAAAT
*
8094011 ATATACATAC
1 ATATATATAC
8094021 ATATATATAC
1 ATATATATAC
* *
8094031 ATACATATAT
1 ATATATATAC
*
8094041 ATATATATAT
1 ATATATATAC
*
8094051 ATATATATAT
1 ATATATATAC
8094061 ATATAT
1 ATATAT
8094067 GTTAAAAATA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
10 42 1.00
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (10 bp):
ATATATATAC
Found at i:8094042 original size:4 final size:4
Alignment explanation
Indices: 8094009--8094066 Score: 80
Period size: 4 Copynumber: 14.5 Consensus size: 4
8093999 TACTTCATAA
* * * *
8094009 ATAT ATAC ATAC ATAT ATAT ACAT ACAT ATAT ATAT ATAT ATAT ATAT
1 ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT
8094057 ATAT ATAT AT
1 ATAT ATAT AT
8094067 GTTAAAAATA
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 50 1.00
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (4 bp):
ATAT
Found at i:8094066 original size:14 final size:14
Alignment explanation
Indices: 8094009--8094057 Score: 80
Period size: 14 Copynumber: 3.5 Consensus size: 14
8093999 TACTTCATAA
8094009 ATATATACATACAT
1 ATATATACATACAT
8094023 ATATATACATACAT
1 ATATATACATACAT
* *
8094037 ATATATATATATAT
1 ATATATACATACAT
8094051 ATATATA
1 ATATATA
8094058 TATATATATG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 33 1.00
ACGTcount: A:0.51, C:0.08, G:0.00, T:0.41
Consensus pattern (14 bp):
ATATATACATACAT
Found at i:8095795 original size:44 final size:44
Alignment explanation
Indices: 8095731--8096255 Score: 718
Period size: 44 Copynumber: 12.2 Consensus size: 44
8095721 AGGAACACTG
* * *
8095731 ATCTGTTATTTTCGATCTGCTCTCTGCCGCTACAGAGACGTCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
* **
8095775 ATCTGTTATCTTCGAGCTGCTCTCCATCGCTACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
* *
8095819 ATCTGTTATCTTCG-TCTGCTCTCTGCTGCTACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
* * *
8095862 ATCTGTTATCTTCGATCTGTTCTCCGTCGCTACA-AGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
* * * *
8095905 ATCTGTTATCTTCGATCTGTTCTCCACTGCTACGGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
* *
8095949 ATCTGTTATCTTCAATCTGCTCACCGCCGCTACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
* *
8095993 ATCTGCTATCTTCGATCTGCTCTCTGCCGCTACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
* *
8096037 ATCTATTATCTTCGATCTGCTCTCCG-CGCTACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
*
8096080 ATC----ATCTTCGATCTGCTCTCCGCCGCTACAGAGACACCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
*
8096120 AT-TGTTATCTTC-ATCTGCTCTCCGCCGCTACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
* *
8096162 ATCTGTTATCTTCGATCTACTCTCCGCCGCTACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
*
8096206 A----TTATCTTCGATCTGCTCTCCGCCTCTACAGAGACG-CAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
8096245 ATCTGTTATCT
1 ATCTGTTATCT
8096256 GTTTAAAGGA
Statistics
Matches: 425, Mismatches: 43, Indels: 27
0.86 0.09 0.05
Matches are distributed among these distances:
39 23 0.05
40 49 0.12
42 30 0.07
43 117 0.28
44 206 0.48
ACGTcount: A:0.22, C:0.31, G:0.17, T:0.30
Consensus pattern (44 bp):
ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
Found at i:8095843 original size:87 final size:88
Alignment explanation
Indices: 8095731--8096255 Score: 718
Period size: 87 Copynumber: 6.1 Consensus size: 88
8095721 AGGAACACTG
* * * *
8095731 ATCTGTTATTTTCGATCTGCTCTCTGCCGCTACAGAGACGTCAAATCTGTTATCTTCGAGCTGCT
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCT
**
8095796 CTCCATCGCTACAGAGACGCCAA
66 CTCCGCCGCTACAGAGACGCCAA
* * *
8095819 ATCTGTTATCTTCG-TCTGCTCTCTGCTGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGTT
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCT
* *
8095883 CTCCGTCGCTACA-AGATGCCAA
66 CTCCGCCGCTACAGAGACGCCAA
* * * * *
8095905 ATCTGTTATCTTCGATCTGTTCTCCACTGCTACGGAGACGCCAAATCTGTTATCTTCAATCTGCT
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCT
*
8095970 CACCGCCGCTACAGAGACGCCAA
66 CTCCGCCGCTACAGAGACGCCAA
* * *
8095993 ATCTGCTATCTTCGATCTGCTCTCTGCCGCTACAGAGACGCCAAATCTATTATCTTCGATCTGCT
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCT
*
8096058 CTCCG-CGCTACAGAGATGCCAA
66 CTCCGCCGCTACAGAGACGCCAA
*
8096080 ATC----ATCTTCGATCTGCTCTCCGCCGCTACAGAGACACCAAAT-TGTTATCTTC-ATCTGCT
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCT
*
8096139 CTCCGCCGCTACAGAGATGCCAA
66 CTCCGCCGCTACAGAGACGCCAA
* *
8096162 ATCTGTTATCTTCGATCTACTCTCCGCCGCTACAGAGATGCCAAA----TTATCTTCGATCTGCT
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCT
*
8096223 CTCCGCCTCTACAGAGACG-CAA
66 CTCCGCCGCTACAGAGACGCCAA
8096245 ATCTGTTATCT
1 ATCTGTTATCT
8096256 GTTTAAAGGA
Statistics
Matches: 395, Mismatches: 34, Indels: 21
0.88 0.08 0.05
Matches are distributed among these distances:
81 12 0.03
82 29 0.07
83 59 0.15
84 24 0.06
86 57 0.14
87 132 0.33
88 82 0.21
ACGTcount: A:0.22, C:0.31, G:0.17, T:0.30
Consensus pattern (88 bp):
ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCT
CTCCGCCGCTACAGAGACGCCAA
Found at i:8102125 original size:26 final size:26
Alignment explanation
Indices: 8102096--8102203 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
8102086 TGGTACAAAT
8102096 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
8102122 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
8102148 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
8102174 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
8102200 TGAT
1 TGAT
8102204 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Done.