Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 290 of 318
Found at i:91412954 original size:15 final size:15
Alignment explanation
Indices: 91412934--91412990 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
91412924 ATTCAATATT
91412934 AATATTTTAATAATA
1 AATATTTTAATAATA
*
91412949 AATATTTATTACAATTATA
1 AATA-TT-TT--AATAATA
*
91412968 AATATATTAATAATA
1 AATATTTTAATAATA
*
91412983 AATGTTTT
1 AATATTTT
91412991 GTAGTATAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
15 16 0.48
16 2 0.06
17 4 0.12
18 1 0.03
19 10 0.30
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:91413467 original size:14 final size:14
Alignment explanation
Indices: 91413450--91413488 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
91413440 CCAGAAAAGT
91413450 AAATCATTTTCCAG
1 AAATCATTTTCCAG
*
91413464 AAATCATTTT-CTG
1 AAATCATTTTCCAG
91413477 AAAGTCATTTTC
1 AAA-TCATTTTC
91413489 AGTGAAACAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
13 5 0.23
14 17 0.77
ACGTcount: A:0.33, C:0.18, G:0.08, T:0.41
Consensus pattern (14 bp):
AAATCATTTTCCAG
Found at i:91416966 original size:20 final size:21
Alignment explanation
Indices: 91416929--91416972 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
91416919 AAACATAATA
91416929 ATAGTATTAAAAAGTATATAC
1 ATAGTATTAAAAAGTATATAC
91416950 ATAGTATTAAAAA-TATATAC
1 ATAGTATTAAAAAGTATATAC
91416970 ATA
1 ATA
91416973 ATATATACAT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 10 0.43
21 13 0.57
ACGTcount: A:0.55, C:0.05, G:0.07, T:0.34
Consensus pattern (21 bp):
ATAGTATTAAAAAGTATATAC
Found at i:91416975 original size:11 final size:11
Alignment explanation
Indices: 91416943--91416983 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
91416933 TATTAAAAAG
*
91416943 TATATACATAG
1 TATATACATAA
*
91416954 TAT-TA-AAAA
1 TATATACATAA
91416963 TATATACATAA
1 TATATACATAA
91416974 TATATACATA
1 TATATACATA
91416984 TTAGAAATAA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
9 5 0.20
10 4 0.16
11 16 0.64
ACGTcount: A:0.54, C:0.07, G:0.02, T:0.37
Consensus pattern (11 bp):
TATATACATAA
Found at i:91417004 original size:46 final size:47
Alignment explanation
Indices: 91416907--91417008 Score: 122
Period size: 47 Copynumber: 2.2 Consensus size: 47
91416897 ATACGTATAT
*
91416907 ATATT-AAAATATAAACATAATAATAGTATTAAAAAGTATATACATA
1 ATATTAAAAATATAAACATAATAATAATATTAAAAAGTATATACATA
* * *
91416953 GTATTAAAAATATATACATAATATATACATATTAGAAA-TA-ATA-ATA
1 ATATTAAAAATATAAACATAATA-ATA-ATATTAAAAAGTATATACATA
91416999 ATATTAAAAA
1 ATATTAAAAA
91417009 CAACTATTAA
Statistics
Matches: 48, Mismatches: 5, Indels: 6
0.81 0.08 0.10
Matches are distributed among these distances:
46 16 0.33
47 19 0.40
48 5 0.10
49 8 0.17
ACGTcount: A:0.59, C:0.04, G:0.04, T:0.33
Consensus pattern (47 bp):
ATATTAAAAATATAAACATAATAATAATATTAAAAAGTATATACATA
Found at i:91417072 original size:19 final size:20
Alignment explanation
Indices: 91417050--91417092 Score: 70
Period size: 19 Copynumber: 2.2 Consensus size: 20
91417040 ACACATATAT
91417050 ATATTAAAAATACATA-ATA
1 ATATTAAAAATACATACATA
*
91417069 ATATTAAAAATACGTACATA
1 ATATTAAAAATACATACATA
91417089 ATAT
1 ATAT
91417093 ATATACATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.58, C:0.07, G:0.02, T:0.33
Consensus pattern (20 bp):
ATATTAAAAATACATACATA
Found at i:91417583 original size:78 final size:77
Alignment explanation
Indices: 91417499--91417644 Score: 179
Period size: 78 Copynumber: 1.8 Consensus size: 77
91417489 TAGACATATA
* * *
91417499 TATATATATA-TATATATGATAATATAAAATACATAACTAATAATATT-TAAGAATGTATACATA
1 TATATATATAGTA-ATAT-AGAATATAAAAT--ATAACTAAT-ATATTAAAAGAATATATACATA
91417562 ATATAGTATAAAAAATG
61 ATATAGTATAAAAAATG
* *
91417579 TATATATATAGGTAATATAGAATTTAAAATATACCTAATATATTAAAAGAATATATACATAATAT
1 TATATATATA-GTAATATAGAATATAAAATATAACTAATATATTAAAAGAATATATACATAATAT
91417644 A
65 A
91417645 ATATTAAGAA
Statistics
Matches: 58, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
77 5 0.09
78 27 0.47
80 20 0.34
81 4 0.07
82 2 0.03
ACGTcount: A:0.53, C:0.04, G:0.06, T:0.36
Consensus pattern (77 bp):
TATATATATAGTAATATAGAATATAAAATATAACTAATATATTAAAAGAATATATACATAATATA
GTATAAAAAATG
Found at i:91417755 original size:22 final size:22
Alignment explanation
Indices: 91417736--91417778 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
91417726 ATACTAATGC
91417736 TAATAAATAATAAATATAATAA
1 TAATAAATAATAAATATAATAA
*
91417758 TAAT-AGTAATAAAATATAATA
1 TAATAAATAAT-AAATATAATA
91417779 GTATACATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (22 bp):
TAATAAATAATAAATATAATAA
Found at i:91419511 original size:88 final size:90
Alignment explanation
Indices: 91419359--91419769 Score: 580
Period size: 90 Copynumber: 4.6 Consensus size: 90
91419349 GTGATCCTGA
* * * *
91419359 GCTCAACTCACTTCTCGCAATATGAGTTGACTCTTT-AAAAACAGACATT--AAAAATAGAAATT
1 GCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACAGAAATTGAAAAAACAGAAATT
* * *
91419421 GAAAATAGCTTAGCACGTGAGCCAAG
65 GAAAATACCTCAGCATGTGAGCCAAG
* * * **
91419447 GCTCAACTCACCTCTCGCAATATGAGTTGATGTTTG-AAAACAGAATTTG-AAAAATAGATTTTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAAAACAGAAATTG
** *
91419510 AAAATACCTTGGCATGTGACCCAAG
66 AAAATACCTCAGCATGTGAGCCAAG
*
91419535 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAAAAAACAGAAATTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAAAACAGAAATTG
91419600 AAAATACCTCAGCATGTGAGCCAAG
66 AAAATACCTCAGCATGTGAGCCAAG
*
91419625 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAAAAAACAGAAATTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAAAACAGAAATTG
91419690 AAAATACCTCAGCATGTGAGCCAAG
66 AAAATACCTCAGCATGTGAGCCAAG
* * *
91419715 GCTCAACTCACCTCTCACAATATGAGTTGATTTTTTTGAAAGACAGCAATTGAAA
1 GCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAACAGAAATTGAAA
91419770 TACCTCAACG
Statistics
Matches: 294, Mismatches: 23, Indels: 8
0.90 0.07 0.02
Matches are distributed among these distances:
87 14 0.05
88 97 0.33
89 11 0.04
90 152 0.52
92 20 0.07
ACGTcount: A:0.39, C:0.19, G:0.16, T:0.26
Consensus pattern (90 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAAAACAGAAATTG
AAAATACCTCAGCATGTGAGCCAAG
Found at i:91419591 original size:15 final size:15
Alignment explanation
Indices: 91419571--91419603 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
91419561 TTGATTTTTG
*
91419571 AAAAACATAAATTGA
1 AAAAACAGAAATTGA
91419586 AAAAACAGAAATTGA
1 AAAAACAGAAATTGA
91419601 AAA
1 AAA
91419604 TACCTCAGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.70, C:0.06, G:0.09, T:0.15
Consensus pattern (15 bp):
AAAAACAGAAATTGA
Found at i:91419645 original size:178 final size:177
Alignment explanation
Indices: 91419359--91419749 Score: 570
Period size: 178 Copynumber: 2.2 Consensus size: 177
91419349 GTGATCCTGA
* * * *
91419359 GCTCAACTCACTTCTCGCAATATGAGTTGACTCTTTAAAAACAGACATTAAAAATAGAAATTGAA
1 GCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTAAAAACAGAAATTAAAAACAGAAATTGAA
* *
91419424 AATAGCTTAGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATGTTTG-AAAAC
65 AATACCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATGTTTGAAAAAC
* * ** **
91419488 AGAATTTG-AAAAATAGATTTTGAAAATACCTTGGCATGTGACCCAAG
130 AGAAATTGAAAAAACAGAAATTGAAAATACCTCAGCATGTGACCCAAG
*
91419535 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAAAAAACAGAAATTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTT-AAAAACAGAAATT--AAAAACAGAAATTG
* *
91419600 AAAATACCTCAGCATGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAA
63 AAAATACCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATGTTTGAAAA
* *
91419665 ACATAAATTGAAAAAACAGAAATTGAAAATACCTCAGCATGTGAGCCAAG
128 ACAGAAATTGAAAAAACAGAAATTGAAAATACCTCAGCATGTGACCCAAG
*
91419715 GCTCAACTCACCTCTCACAATATGAGTTGATTTTT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
91419750 TTGAAAGACA
Statistics
Matches: 192, Mismatches: 18, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
175 4 0.02
176 40 0.21
178 70 0.36
179 11 0.06
180 67 0.35
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.27
Consensus pattern (177 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAAACAGAAATTAAAAACAGAAATTGAAA
ATACCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATGTTTGAAAAACA
GAAATTGAAAAAACAGAAATTGAAAATACCTCAGCATGTGACCCAAG
Found at i:91419681 original size:15 final size:15
Alignment explanation
Indices: 91419661--91419693 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
91419651 TTGATTTTTG
*
91419661 AAAAACATAAATTGA
1 AAAAACAGAAATTGA
91419676 AAAAACAGAAATTGA
1 AAAAACAGAAATTGA
91419691 AAA
1 AAA
91419694 TACCTCAGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.70, C:0.06, G:0.09, T:0.15
Consensus pattern (15 bp):
AAAAACAGAAATTGA
Found at i:91423975 original size:43 final size:42
Alignment explanation
Indices: 91423898--91424007 Score: 141
Period size: 43 Copynumber: 2.6 Consensus size: 42
91423888 AAATTACATG
* *
91423898 TAAGACCATATCTGGGATATGGCATCGATGTGAGA-CTTCATA
1 TAAGACCATAGCTGGGATATGGCATCGATATGAGATC-TCATA
* *
91423940 TAAGACCATAGCTGGGCTATTGGCATCGATATGAGATCTCATG
1 TAAGACCATAGCTGGGATA-TGGCATCGATATGAGATCTCATA
**
91423983 TAAGACCATAATTGGGATATGGCAT
1 TAAGACCATAGCTGGGATATGGCAT
91424008 TGGTATGGTA
Statistics
Matches: 59, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
42 23 0.39
43 35 0.59
44 1 0.02
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28
Consensus pattern (42 bp):
TAAGACCATAGCTGGGATATGGCATCGATATGAGATCTCATA
Found at i:91424230 original size:24 final size:24
Alignment explanation
Indices: 91424198--91424246 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
91424188 GATTAGATGA
91424198 CCTTAATACCATGTATGCCAAGTT
1 CCTTAATACCATGTATGCCAAGTT
91424222 CCTTAATACCATGTATGCCAAGTT
1 CCTTAATACCATGTATGCCAAGTT
91424246 C
1 C
91424247 ATCATGTTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.29, C:0.27, G:0.12, T:0.33
Consensus pattern (24 bp):
CCTTAATACCATGTATGCCAAGTT
Found at i:91424439 original size:24 final size:23
Alignment explanation
Indices: 91424408--91424494 Score: 102
Period size: 24 Copynumber: 3.6 Consensus size: 23
91424398 CACACTATCC
91424408 ATTTAATATTTTGGGTACCAATG
1 ATTTAATATTTTGGGTACCAATG
* * *
91424431 ATTTCAATATTTTGAGTCACACTATCC
1 ATTT-AATATTTTGGGT-AC-CAAT-G
91424458 ATTTAATATTTTGGGTACCAATG
1 ATTTAATATTTTGGGTACCAATG
91424481 ATTTCAATATTTTG
1 ATTT-AATATTTTG
91424495 AGTTATGGCA
Statistics
Matches: 53, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
23 8 0.15
24 23 0.43
25 4 0.08
26 14 0.26
27 4 0.08
ACGTcount: A:0.30, C:0.13, G:0.13, T:0.45
Consensus pattern (23 bp):
ATTTAATATTTTGGGTACCAATG
Found at i:91424468 original size:26 final size:26
Alignment explanation
Indices: 91424395--91424470 Score: 95
Period size: 24 Copynumber: 3.0 Consensus size: 26
91424385 TCAGAGATCT
91424395 AGTCACACTATCCATTTAATATTTTG
1 AGTCACACTATCCATTTAATATTTTG
* * *
91424421 GGT-AC-CAAT-GATTTCAATATTTTG
1 AGTCACACTATCCATTT-AATATTTTG
91424445 AGTCACACTATCCATTTAATATTTTG
1 AGTCACACTATCCATTTAATATTTTG
91424471 GGTACCAATG
Statistics
Matches: 40, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
23 4 0.10
24 14 0.35
25 4 0.10
26 14 0.35
27 4 0.10
ACGTcount: A:0.30, C:0.17, G:0.11, T:0.42
Consensus pattern (26 bp):
AGTCACACTATCCATTTAATATTTTG
Found at i:91424470 original size:50 final size:50
Alignment explanation
Indices: 91424395--91424497 Score: 206
Period size: 50 Copynumber: 2.1 Consensus size: 50
91424385 TCAGAGATCT
91424395 AGTCACACTATCCATTTAATATTTTGGGTACCAATGATTTCAATATTTTG
1 AGTCACACTATCCATTTAATATTTTGGGTACCAATGATTTCAATATTTTG
91424445 AGTCACACTATCCATTTAATATTTTGGGTACCAATGATTTCAATATTTTG
1 AGTCACACTATCCATTTAATATTTTGGGTACCAATGATTTCAATATTTTG
91424495 AGT
1 AGT
91424498 TATGGCATGT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 53 1.00
ACGTcount: A:0.30, C:0.16, G:0.13, T:0.42
Consensus pattern (50 bp):
AGTCACACTATCCATTTAATATTTTGGGTACCAATGATTTCAATATTTTG
Found at i:91434756 original size:31 final size:31
Alignment explanation
Indices: 91434706--91434765 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 31
91434696 TTCGTTGTTT
* * *
91434706 TATTCATATTATGATTTTTGATGATTTTTAA
1 TATTCATATTATAACTTTTGATGACTTTTAA
* *
91434737 TATTTATATTATAACTTTTGGTGACTTTT
1 TATTCATATTATAACTTTTGATGACTTTT
91434766 CGTTGCTATA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.27, C:0.05, G:0.10, T:0.58
Consensus pattern (31 bp):
TATTCATATTATAACTTTTGATGACTTTTAA
Found at i:91437606 original size:17 final size:19
Alignment explanation
Indices: 91437584--91437715 Score: 145
Period size: 17 Copynumber: 7.4 Consensus size: 19
91437574 ATGGAAATAT
91437584 AATCTT-CA-ATGATATGC
1 AATCTTACATATGATATGC
*
91437601 AATCTTAGATATGATATGC
1 AATCTTACATATGATATGC
*
91437620 AATCTTAGATATGATA--C
1 AATCTTACATATGATATGC
*
91437637 AATCTTAGATATGAT-TGC
1 AATCTTACATATGATATGC
*
91437655 AATCTTAGATATGATA--C
1 AATCTTACATATGATATGC
*
91437672 AATCTTAGATATGAT-TGC
1 AATCTTACATATGATATGC
* *
91437690 ATTCTTAGATATGATATGC
1 AATCTTACATATGATATGC
91437709 AATCTTA
1 AATCTTA
91437716 GAAGATATGA
Statistics
Matches: 104, Mismatches: 3, Indels: 14
0.86 0.02 0.12
Matches are distributed among these distances:
17 38 0.37
18 32 0.31
19 34 0.33
ACGTcount: A:0.36, C:0.12, G:0.14, T:0.38
Consensus pattern (19 bp):
AATCTTACATATGATATGC
Found at i:91437663 original size:35 final size:35
Alignment explanation
Indices: 91437600--91437717 Score: 200
Period size: 35 Copynumber: 3.3 Consensus size: 35
91437590 CAATGATATG
91437600 CAATCTTAGATATGATATGCAATCTTAGATATGATA
1 CAATCTTAGATATGAT-TGCAATCTTAGATATGATA
91437636 CAATCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
*
91437671 CAATCTTAGATATGATTGCATTCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
91437706 TGCAATCTTAGA
1 --CAATCTTAGA
91437718 AGATATGATT
Statistics
Matches: 79, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
35 53 0.67
36 16 0.20
37 10 0.13
ACGTcount: A:0.36, C:0.12, G:0.14, T:0.37
Consensus pattern (35 bp):
CAATCTTAGATATGATTGCAATCTTAGATATGATA
Found at i:91437724 original size:17 final size:19
Alignment explanation
Indices: 91437592--91437717 Score: 201
Period size: 19 Copynumber: 6.9 Consensus size: 19
91437582 ATAATCTTCA
91437592 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
91437611 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
91437630 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
91437647 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
91437665 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
91437682 ATGAT-TGCATTCTTAGAT
1 ATGATATGCAATCTTAGAT
91437700 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
91437718 AGATATGATT
Statistics
Matches: 99, Mismatches: 2, Indels: 12
0.88 0.02 0.11
Matches are distributed among these distances:
17 32 0.32
18 31 0.31
19 36 0.36
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:91437743 original size:22 final size:22
Alignment explanation
Indices: 91437592--91437740 Score: 94
Period size: 19 Copynumber: 7.8 Consensus size: 22
91437582 ATAATCTTCA
91437592 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
91437611 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
91437630 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
91437647 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
91437665 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
*
91437682 ATGAT-TGCATTCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
91437700 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
91437722 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
91437741 GATTTAATTT
Statistics
Matches: 116, Mismatches: 4, Indels: 16
0.85 0.03 0.12
Matches are distributed among these distances:
17 32 0.28
18 31 0.27
19 33 0.28
22 8 0.07
23 12 0.10
ACGTcount: A:0.36, C:0.10, G:0.15, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:91438036 original size:18 final size:17
Alignment explanation
Indices: 91438013--91438046 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
91438003 CCTGATTTTT
*
91438013 TTTTTTTATATATTTTAA
1 TTTTTTAATA-ATTTTAA
91438031 TTTTTTAATAATTTTA
1 TTTTTTAATAATTTTA
91438047 GTATCATATC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTTTTAATAATTTTAA
Found at i:91441454 original size:14 final size:15
Alignment explanation
Indices: 91441435--91441471 Score: 51
Period size: 14 Copynumber: 2.5 Consensus size: 15
91441425 TCGACATCTT
91441435 TTTGCATTCAT-GCA
1 TTTGCATTCATAGCA
91441449 TTTGCATTTCATAGCA
1 TTTGCA-TTCATAGCA
91441465 TTT-CATT
1 TTTGCATT
91441472 GTATCATATG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
14 8 0.38
15 7 0.33
16 6 0.29
ACGTcount: A:0.22, C:0.19, G:0.11, T:0.49
Consensus pattern (15 bp):
TTTGCATTCATAGCA
Found at i:91441471 original size:15 final size:15
Alignment explanation
Indices: 91441435--91441471 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
91441425 TCGACATCTT
91441435 TTTGCA-TTCATGCA
1 TTTGCATTTCATGCA
91441449 TTTGCATTTCATAGCA
1 TTTGCATTTCAT-GCA
91441465 TTT-CATT
1 TTTGCATT
91441472 GTATCATATG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 6 0.29
15 9 0.43
16 6 0.29
ACGTcount: A:0.22, C:0.19, G:0.11, T:0.49
Consensus pattern (15 bp):
TTTGCATTTCATGCA
Found at i:91449960 original size:78 final size:78
Alignment explanation
Indices: 91449850--91450133 Score: 435
Period size: 78 Copynumber: 3.6 Consensus size: 78
91449840 CGAAGAAATA
* * * * * *
91449850 GATTTGGCATCTCTATATTCGACGGAGAGCAGATAGAAGACATAGCAGATCTAACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATCTGACCTTCATTGAA
91449915 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* *
91449928 GATTTGGCATCTCTGTATTAAACGGGGAGCAGATCGAAGACACAACAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATCTGACCTTCATTGAA
*
91449993 GCAGATCTAAGAT
66 GCAGATCCAAGAT
* *
91450006 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAAAT-TGGACCTTTATTGA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATCT-GACCTTCATTGA
*
91450070 AGCAAATCCAAGAT
65 AGCAGATCCAAGAT
*
91450084 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGAT
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGAT
91450134 TTGGCTTTCA
Statistics
Matches: 188, Mismatches: 17, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
77 1 0.01
78 187 0.99
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.25
Consensus pattern (78 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATCTGACCTTCATTGAA
GCAGATCCAAGAT
Found at i:91450344 original size:78 final size:78
Alignment explanation
Indices: 91450215--91450509 Score: 414
Period size: 78 Copynumber: 3.8 Consensus size: 78
91450205 CAAAGAAACA
* * * *
91450215 AATTTGGCATCTCTATATTCGACGGAGAGTAGATCGAAGACATA-CTAGATCTGACCTTCATTGA
1 AATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGC-AGATCTGACCTTCATTGA
*
91450279 AGTAGATCCAAGAT
65 AGCAGATCCAAGAT
* * *
91450293 AATTTGGCATATCTGTATTAGACGGGGAGCAGATCAAAGACACAGCAGATCTGACCTTCATTGAA
1 AATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
91450358 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* * * *
91450371 GATTTGGCATCTCTGTATTAAACGGGGAGCAGATCGAAGTCATAACAGAT-TGGACCTTCATTGA
1 AATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCT-GACCTTCATTGA
*
91450435 AGCAAATCCAAGAT
65 AGCAGATCCAAGAT
* * *
91450449 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGTAGATCTGACATTCAT
1 AATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCAT
91450510 GTGTTTACAT
Statistics
Matches: 193, Mismatches: 21, Indels: 6
0.88 0.10 0.03
Matches are distributed among these distances:
77 1 0.01
78 190 0.98
79 2 0.01
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26
Consensus pattern (78 bp):
AATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
GCAGATCCAAGAT
Found at i:91450453 original size:365 final size:365
Alignment explanation
Indices: 91449745--91450625 Score: 1327
Period size: 365 Copynumber: 2.4 Consensus size: 365
91449735 GCGTTTACAA
*
91449745 GGAGCAGATCGAAGACATAGCAGATTTAGCTTTCATGT-TTTACGCTGAAGCAGATCTAAGATGA
1 GGAGCAGATCGAAGACATAGCAGATTTGGCTTTCATGTGTTTACGCTGAAGCAGATCTAAGATGA
* * *
91449809 TTTGGCATCTCTGTACTGTCAGAGAACAAATCGAAGAAATAGATTTGGCATCTCTATATTCGACG
66 TTTGGCATCTCTGTACTGTCAGAGAACAAATCAAAGAAACAAATTTGGCATCTCTATATTCGACG
* *
91449874 GAGAGCAGATAGAAGACATAGCAGATCTAACCTTCATTGAAGCAGATCCAAGATGATTTGGCATC
131 GAGAGCAGATAGAAGACATAGCAGATCTAACCTTCATTGAAGCAGATCCAAGATAATTTGGCATA
* *
91449939 TCTGTATTAAACGGGGAGCAGATCGAAGACACAACAGATCTGACCTTCATTGAAGCAGATCTAAG
196 TCTGTATTAAACGGGGAGCAGATCAAAGACACAACAGATCTGACCTTCATTGAAGCAGATCCAAG
* *
91450004 ATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAAATTGGACCTTTATTG
261 ATGATTTGGCATCTCTGTATTAAACGGGGAGCAGATCGAAGACATAACAAATTGGACCTTCATTG
91450069 AAGCAAATCCAAGATGATTTGGCATCTCTGTATTAGACGG
326 AAGCAAATCCAAGATGATTTGGCATCTCTGTATTAGACGG
*
91450109 GGAGCAGATCGAAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGA
1 GGAGCAGATCGAAGACATAGCAGATTTGGCTTTCATGTGTTTACGCTGAAGCAGATCTAAGATGA
91450174 TTTGGCATCTCTGTACTGTCAGAGAACAAATCAAAGAAACAAATTTGGCATCTCTATATTCGACG
66 TTTGGCATCTCTGTACTGTCAGAGAACAAATCAAAGAAACAAATTTGGCATCTCTATATTCGACG
* * * *
91450239 GAGAGTAGATCGAAGACATA-CTAGATCTGACCTTCATTGAAGTAGATCCAAGATAATTTGGCAT
131 GAGAGCAGATAGAAGACATAGC-AGATCTAACCTTCATTGAAGCAGATCCAAGATAATTTGGCAT
* *
91450303 ATCTGTATTAGACGGGGAGCAGATCAAAGACACAGCAGATCTGACCTTCATTGAAGCAGATCCAA
195 ATCTGTATTAAACGGGGAGCAGATCAAAGACACAACAGATCTGACCTTCATTGAAGCAGATCCAA
* *
91450368 GATGATTTGGCATCTCTGTATTAAACGGGGAGCAGATCGAAGTCATAACAGATTGGACCTTCATT
260 GATGATTTGGCATCTCTGTATTAAACGGGGAGCAGATCGAAGACATAACAAATTGGACCTTCATT
91450433 GAAGCAAATCCAAGATGATTTGGCATCTCTGTATTAGACGG
325 GAAGCAAATCCAAGATGATTTGGCATCTCTGTATTAGACGG
* * * * * *
91450474 GGAGCAGATCGAAGACATAGTAGATCTGACATTCATGTGTTTAC-ATCGAAGCAGATCCAAGATG
1 GGAGCAGATCGAAGACATAGCAGATTTGGCTTTCATGTGTTTACGCT-GAAGCAGATCTAAGAT-
* * * * * * ** * *
91450538 ACAGATTTGGCATCTTTGTATTAGACGGGGAGCAAATCGGAGATAACAGATTTGGCATCTCTGTA
64 ---GATTTGGCATCTCTGTACT-GTCAGAGAACAAATCAAAGA-AACAAATTTGGCATCTCTATA
* * *
91450603 TTAGACGGGGAGCAGATTGAAGA
124 TTCGACGGAGAGCAGATAGAAGA
91450626 AGCAGATTTG
Statistics
Matches: 468, Mismatches: 40, Indels: 11
0.90 0.08 0.02
Matches are distributed among these distances:
364 38 0.08
365 361 0.77
369 17 0.04
370 14 0.03
371 38 0.08
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.26
Consensus pattern (365 bp):
GGAGCAGATCGAAGACATAGCAGATTTGGCTTTCATGTGTTTACGCTGAAGCAGATCTAAGATGA
TTTGGCATCTCTGTACTGTCAGAGAACAAATCAAAGAAACAAATTTGGCATCTCTATATTCGACG
GAGAGCAGATAGAAGACATAGCAGATCTAACCTTCATTGAAGCAGATCCAAGATAATTTGGCATA
TCTGTATTAAACGGGGAGCAGATCAAAGACACAACAGATCTGACCTTCATTGAAGCAGATCCAAG
ATGATTTGGCATCTCTGTATTAAACGGGGAGCAGATCGAAGACATAACAAATTGGACCTTCATTG
AAGCAAATCCAAGATGATTTGGCATCTCTGTATTAGACGG
Found at i:91450646 original size:44 final size:45
Alignment explanation
Indices: 91450449--91450722 Score: 304
Period size: 45 Copynumber: 6.1 Consensus size: 45
91450439 AATCCAAGAT
**
91450449 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGTA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAG--ATAACA
* * * * * * *
91450496 GATCTGACAT-TCATGTGTTTACATC--GAAGCAGATCCAAGATGACA
1 GATTTGGCATCTC-TGT-ATTAGA-CGGGGAGCAGATCGAAGATAACA
* * *
91450541 GATTTGGCATCTTTGTATTAGACGGGGAGCAAATCGGAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
* *
91450586 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAAGA-AGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
*
91450630 GATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
* * * *
91450675 GATTTTGCGTCTCTGTAATAGACGGGGAGCAGATCAAAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
91450720 GAT
1 GAT
91450723 ATCGCCTTCT
Statistics
Matches: 190, Mismatches: 30, Indels: 16
0.81 0.13 0.07
Matches are distributed among these distances:
43 1 0.01
44 45 0.24
45 113 0.59
46 3 0.02
47 23 0.12
48 4 0.02
49 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.28, T:0.26
Consensus pattern (45 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
Found at i:91450650 original size:89 final size:89
Alignment explanation
Indices: 91450539--91450708 Score: 277
Period size: 89 Copynumber: 1.9 Consensus size: 89
91450529 TCCAAGATGA
* * *
91450539 CAGATTTGGCATCTTTGTATTAGACGGGGAGCAAATCGGAGATAACAGATTTGGCATCTCTGTAT
1 CAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACAGATTTGGCATCTCTGTAA
91450604 TAGACGGGGAGCAGATTGAAGAAG
66 TAGACGGGGAGCAGATTGAAGAAG
* * * *
91450628 CAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAACAGATTTTGCGTCTCTGTAA
1 CAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACAGATTTGGCATCTCTGTAA
91450693 TAGACGGGGAGCAGAT
66 TAGACGGGGAGCAGAT
91450709 CAAAGATAAC
Statistics
Matches: 74, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
89 74 1.00
ACGTcount: A:0.29, C:0.15, G:0.31, T:0.26
Consensus pattern (89 bp):
CAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACAGATTTGGCATCTCTGTAA
TAGACGGGGAGCAGATTGAAGAAG
Found at i:91450716 original size:134 final size:136
Alignment explanation
Indices: 91450449--91450722 Score: 324
Period size: 134 Copynumber: 2.0 Consensus size: 136
91450439 AATCCAAGAT
* *
91450449 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGTAGATCTGACATTCATGTGT
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGA-ATAGCAGATCTGACATTCATGTGA
* * * **
91450514 TTACATCGAAGCAGATCCAAGATGACAGATTTGGCATCTTTGTATTAGACGGGGAGCAAATCGGA
65 TTACATCGAAGCAGATCCAAGATAACAGATTTGGCATCTCTGTAATAGACGGGGAGCAAATCAAA
91450579 GATAACA
130 GATAACA
* * * *
91450586 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAAG-A-AGCAGATTTGGCGTCTC-TGT-A
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGAATAGCAGATCTGACAT-TCATGTGA
* * * * * *
91450647 TTAGA-CGGGGAGCAGATCGAAGATAACAGATTTTGCGTCTCTGTAATAGACGGGGAGCAGATCA
65 TTACATC--GAAGCAGATCCAAGATAACAGATTTGGCATCTCTGTAATAGACGGGGAGCAAATCA
91450711 AAGATAACA
128 AAGATAACA
91450720 GAT
1 GAT
91450723 ATCGCCTTCT
Statistics
Matches: 117, Mismatches: 17, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
132 1 0.01
133 4 0.03
134 71 0.61
135 3 0.03
137 38 0.32
ACGTcount: A:0.31, C:0.15, G:0.28, T:0.26
Consensus pattern (136 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGAATAGCAGATCTGACATTCATGTGAT
TACATCGAAGCAGATCCAAGATAACAGATTTGGCATCTCTGTAATAGACGGGGAGCAAATCAAAG
ATAACA
Found at i:91451092 original size:14 final size:15
Alignment explanation
Indices: 91451073--91451128 Score: 60
Period size: 18 Copynumber: 3.5 Consensus size: 15
91451063 AATCTTCAAT
91451073 GATATG-CAATCTTA
1 GATATGACAATCTTA
91451087 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
91451104 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
91451122 GATATGA
1 GATATGA
91451129 TATGCAATCT
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
14 6 0.17
15 1 0.03
17 14 0.39
18 15 0.42
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:91451117 original size:35 final size:37
Alignment explanation
Indices: 91451071--91451149 Score: 121
Period size: 35 Copynumber: 2.2 Consensus size: 37
91451061 ATAATCTTCA
91451071 ATGATATGCAATCTTAGATATGATA-CAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATAGCAATCTTAGAT
91451107 ATGAT-TGCAATCTTAGATATGATATGCAATCTTAGA-
1 ATGATATGCAATCTTAGATATGATA-GCAATCTTAGAT
91451143 A-GATATG
1 ATGATATG
91451150 ATTTTGTAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
35 22 0.55
36 8 0.20
37 10 0.25
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.35
Consensus pattern (37 bp):
ATGATATGCAATCTTAGATATGATAGCAATCTTAGAT
Found at i:91451149 original size:17 final size:19
Alignment explanation
Indices: 91451071--91451142 Score: 123
Period size: 19 Copynumber: 3.9 Consensus size: 19
91451061 ATAATCTTCA
91451071 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
91451090 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
91451107 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
91451125 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
91451143 AGATATGATT
Statistics
Matches: 50, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
17 16 0.32
18 16 0.32
19 18 0.36
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:91451168 original size:22 final size:22
Alignment explanation
Indices: 91451071--91451165 Score: 79
Period size: 17 Copynumber: 4.8 Consensus size: 22
91451061 ATAATCTTCA
91451071 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
91451090 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
91451107 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
91451125 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
91451147 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
91451166 GATTTAATTT
Statistics
Matches: 67, Mismatches: 2, Indels: 10
0.85 0.03 0.13
Matches are distributed among these distances:
17 16 0.24
18 16 0.24
19 15 0.22
22 8 0.12
23 12 0.18
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:91455862 original size:29 final size:32
Alignment explanation
Indices: 91455829--91455887 Score: 88
Period size: 31 Copynumber: 1.9 Consensus size: 32
91455819 AGTTAAGTCT
91455829 ATTTTAAAT-T-TATTCATATTATT-TTAAAA
1 ATTTTAAATATATATTCATATTATTATTAAAA
*
91455858 ATTTTAAATATATATTTATATTATTATTAA
1 ATTTTAAATATATATTCATATTATTATTAA
91455888 TTTAATGTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
29 9 0.35
30 1 0.04
31 12 0.46
32 4 0.15
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (32 bp):
ATTTTAAATATATATTCATATTATTATTAAAA
Found at i:91456829 original size:16 final size:17
Alignment explanation
Indices: 91456789--91456836 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
91456779 AGTATGCAAA
91456789 AAAAAATATAAAAATAC
1 AAAAAATATAAAAATAC
* *
91456806 AAATAAATA-AAAATTAT
1 AAA-AAATATAAAAATAC
91456823 AAAAAATTATAAAA
1 AAAAAA-TATAAAA
91456837 TGCATTAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
16 3 0.12
17 14 0.54
18 9 0.35
ACGTcount: A:0.75, C:0.02, G:0.00, T:0.23
Consensus pattern (17 bp):
AAAAAATATAAAAATAC
Found at i:91457083 original size:9 final size:9
Alignment explanation
Indices: 91457071--91457154 Score: 53
Period size: 9 Copynumber: 8.7 Consensus size: 9
91457061 TTTCTATATA
91457071 TTTTATAATTT
1 TTTTATAA--T
*
91457082 TTTTCTAAT
1 TTTTATAAT
91457091 TTTTAATAAT
1 TTTT-ATAAT
*
91457101 TTATTA-AAA
1 TT-TTATAAT
*
91457110 TTTAATAAT
1 TTTTATAAT
*
91457119 TTTTATAAC
1 TTTTATAAT
91457128 TTTTATTGAATT
1 TTTTA-T-AA-T
*
91457140 TTTTATTAT
1 TTTTATAAT
91457149 TTTTAT
1 TTTTAT
91457155 CCATATATCA
Statistics
Matches: 58, Mismatches: 9, Indels: 14
0.72 0.11 0.17
Matches are distributed among these distances:
8 2 0.03
9 30 0.52
10 9 0.16
11 12 0.21
12 5 0.09
ACGTcount: A:0.32, C:0.02, G:0.01, T:0.64
Consensus pattern (9 bp):
TTTTATAAT
Found at i:91457101 original size:21 final size:22
Alignment explanation
Indices: 91457061--91457102 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
91457051 CCTTTCTATA
91457061 TTTCTATATATTTTATAATTTT
1 TTTCTATATATTTTATAATTTT
91457083 TTTCTA-AT-TTTTAATAATTT
1 TTTCTATATATTTT-ATAATTT
91457103 ATTAAAATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 4 0.21
21 9 0.47
22 6 0.32
ACGTcount: A:0.29, C:0.05, G:0.00, T:0.67
Consensus pattern (22 bp):
TTTCTATATATTTTATAATTTT
Found at i:91459739 original size:18 final size:17
Alignment explanation
Indices: 91459706--91459738 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
91459696 TTTATTCTCT
91459706 TTTAATTTTGACTTTTA
1 TTTAATTTTGACTTTTA
91459723 TTTACATTTTGA-TTTT
1 TTTA-ATTTTGACTTTT
91459739 TTTCAATAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.21, C:0.06, G:0.06, T:0.67
Consensus pattern (17 bp):
TTTAATTTTGACTTTTA
Found at i:91460700 original size:124 final size:127
Alignment explanation
Indices: 91460449--91460709 Score: 332
Period size: 124 Copynumber: 2.1 Consensus size: 127
91460439 GAGTATGAGC
* *
91460449 TTGCCTTCTATTTCATTTAAAACTCATGTATTTAAATTTTAAAAAGGATATTCGGATATTTAGAT
1 TTGCCTT-TATTTCATTTAAAACTCATGTATTTAAATTTTAAAAAGGATAATCGGATACTTAGAT
* * * *
91460514 CAAACGGAAAATCGAAACCTAGTACGTTAGGGCACGACTACTCGAATTTCTAAATACGGAATA
65 CAAACGAAAAATCGAAACCTAGTACGTTAGGACACGACTACTAGAATTTCCAAATACGGAATA
* * * * *
91460577 TTGTCTTTATTTTATTT-AAACTCATGTATTTTAA-TTT-AAAAGGATAATCGGTTACTTAGGTC
1 TTGCCTTTATTTCATTTAAAACTCATGTATTTAAATTTTAAAAAGGATAATCGGATACTTAGATC
* * * **
91460639 AAACGAAAAA-CTGAAACCTAGTACGTTAGGACACGATTTCTAGAATTTCCAAGTATTGAATA
66 AAACGAAAAATC-GAAACCTAGTACGTTAGGACACGACTACTAGAATTTCCAAATACGGAATA
91460701 TTGCCTTTA
1 TTGCCTTTA
91460710 CTTGAAAAAT
Statistics
Matches: 115, Mismatches: 17, Indels: 6
0.83 0.12 0.04
Matches are distributed among these distances:
123 1 0.01
124 80 0.70
125 3 0.03
126 16 0.14
127 9 0.08
128 6 0.05
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.36
Consensus pattern (127 bp):
TTGCCTTTATTTCATTTAAAACTCATGTATTTAAATTTTAAAAAGGATAATCGGATACTTAGATC
AAACGAAAAATCGAAACCTAGTACGTTAGGACACGACTACTAGAATTTCCAAATACGGAATA
Found at i:91460906 original size:25 final size:23
Alignment explanation
Indices: 91460875--91460927 Score: 70
Period size: 25 Copynumber: 2.2 Consensus size: 23
91460865 GACGGATAAT
91460875 AAAAATAACGGTAACAATAATTTAA
1 AAAAATAACGGTAACAAT-A-TTAA
* *
91460900 AAAAATAATGGTAATAATATTAA
1 AAAAATAACGGTAACAATATTAA
91460923 AAAAA
1 AAAAA
91460928 GTAAATATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
23 9 0.35
24 1 0.04
25 16 0.62
ACGTcount: A:0.64, C:0.04, G:0.08, T:0.25
Consensus pattern (23 bp):
AAAAATAACGGTAACAATATTAA
Found at i:91460963 original size:3 final size:3
Alignment explanation
Indices: 91460957--91461332 Score: 102
Period size: 3 Copynumber: 123.3 Consensus size: 3
91460947 TAGTGTTAAA
* * * *
91460957 AAT AAT AAT AAT AAT AA- ACA- AACG ACAT ATT AAT GAT AAT AGAA AAT
1 AAT AAT AAT AAT AAT AAT A-AT AA-T A-AT AAT AAT AAT AAT A-AT AAT
* * *
91461004 AAT TAT AAT AAT AACGG AAGT AAT GAA- AAT AAT AAT AAT AGA- AAC
1 AAT AAT AAT AAT AA--T AA-T AAT -AAT AAT AAT AAT AAT A-AT AAT
* * * *
91461049 AAT AGT AAT AA- AAGT AAT AAT AA- AAT AGAA AAT AAC AAT GAT ACATT
1 AAT AAT AAT AAT AA-T AAT AAT AAT AAT A-AT AAT AAT AAT AAT A-A-T
* ** *
91461096 AAT AAT AAT AAT AAT -AT ACGT GCT AAT AAC AAT AAT AAT -AT AA-
1 AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * *
91461139 AA- AAT AA- AAT AAT ACT -AT ATT GAT AAA AAT AAT AAT AGT AGGTT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A--AT
* * * *
91461183 AAT AAT AAT AAGGT ACA- AA- AAT AAT AA- AAT AAT AAA AAC ACT ATT
1 AAT AAT AAT AA--T A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * * * *
91461228 ACGTT ACT ACT ACT AAT AAT AAT AAT AAT AA- AGAA AAC AGT AAT AGT
1 A--AT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT
* *
91461275 -AT ATAG AAT AAT AAT AAT AAT ACT AAT AAT AAT AAT AAT AAT AAT
1 AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
*
91461320 AAT AAT AAC AAT A
1 AAT AAT AAT AAT A
91461333 TTCCCTTCTA
Statistics
Matches: 280, Mismatches: 57, Indels: 72
0.68 0.14 0.18
Matches are distributed among these distances:
2 27 0.10
3 220 0.79
4 20 0.07
5 12 0.04
6 1 0.00
ACGTcount: A:0.60, C:0.06, G:0.07, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:91461801 original size:12 final size:12
Alignment explanation
Indices: 91461784--91461814 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
91461774 GGTGATAGAG
91461784 TTAGTGGTTGGT
1 TTAGTGGTTGGT
91461796 TTAGTGGTTGGT
1 TTAGTGGTTGGT
91461808 TTAGTGG
1 TTAGTGG
91461815 GGTGTTAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.10, C:0.00, G:0.42, T:0.48
Consensus pattern (12 bp):
TTAGTGGTTGGT
Found at i:91462166 original size:21 final size:20
Alignment explanation
Indices: 91462121--91462165 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
91462111 ATATCTATAT
* *
91462121 AAAAATGAAAAAGAAACTCA
1 AAAAATGAAAAAGAAAATAA
*
91462141 AAAAATGAGAAAGAAAATAA
1 AAAAATGAAAAAGAAAATAA
91462161 AAAAA
1 AAAAA
91462166 AGATGAGATC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.76, C:0.04, G:0.11, T:0.09
Consensus pattern (20 bp):
AAAAATGAAAAAGAAAATAA
Found at i:91465284 original size:21 final size:21
Alignment explanation
Indices: 91465245--91465311 Score: 59
Period size: 21 Copynumber: 3.2 Consensus size: 21
91465235 CAATATTCAT
91465245 TTCAAT-TCAAATAATCAATATA
1 TTCAATAT-AAAT-ATCAATATA
* *
91465267 TTCAATATATATATCAAT-TC
1 TTCAATATAAATATCAATATA
*
91465287 TATCAATATAAAT-TCAATAAA
1 T-TCAATATAAATATCAATATA
91465308 TTCA
1 TTCA
91465312 TCACATACTA
Statistics
Matches: 37, Mismatches: 5, Indels: 8
0.74 0.10 0.16
Matches are distributed among these distances:
20 10 0.27
21 17 0.46
22 9 0.24
23 1 0.03
ACGTcount: A:0.48, C:0.13, G:0.00, T:0.39
Consensus pattern (21 bp):
TTCAATATAAATATCAATATA
Found at i:91465327 original size:24 final size:24
Alignment explanation
Indices: 91465282--91465328 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
91465272 TATATATATC
91465282 AATTCTATCAATATAAATTCAATA
1 AATTCTATCAATATAAATTCAATA
91465306 AATTC-ATCACATACTAAA-TCAAT
1 AATTCTATCA-ATA-TAAATTCAAT
91465329 CTATTTTAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 4 0.19
24 13 0.62
25 4 0.19
ACGTcount: A:0.49, C:0.17, G:0.00, T:0.34
Consensus pattern (24 bp):
AATTCTATCAATATAAATTCAATA
Found at i:91465739 original size:30 final size:28
Alignment explanation
Indices: 91465704--91465762 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 28
91465694 ATTTCACTTA
**
91465704 AATCCCTAATTTTCAAAATTTTCACAATTT
1 AATCCCTAATACTCAAAA-TTT-ACAATTT
91465734 AATCCCTAATACTCAAAATTTACAATTT
1 AATCCCTAATACTCAAAATTTACAATTT
91465762 A
1 A
91465763 TTCTACAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
28 8 0.30
29 3 0.11
30 16 0.59
ACGTcount: A:0.41, C:0.20, G:0.00, T:0.39
Consensus pattern (28 bp):
AATCCCTAATACTCAAAATTTACAATTT
Found at i:91466040 original size:20 final size:20
Alignment explanation
Indices: 91466017--91466055 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
91466007 TCCTTTTCCT
*
91466017 TTCTTTCCTTCTCTGTTTCG
1 TTCTATCCTTCTCTGTTTCG
* *
91466037 TTCTATCTTTCTCTTTTTC
1 TTCTATCCTTCTCTGTTTC
91466056 TATTTCTATT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.03, C:0.28, G:0.05, T:0.64
Consensus pattern (20 bp):
TTCTATCCTTCTCTGTTTCG
Found at i:91466091 original size:5 final size:5
Alignment explanation
Indices: 91466083--91466124 Score: 84
Period size: 5 Copynumber: 8.4 Consensus size: 5
91466073 CTTTTTATTT
91466083 TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TA
1 TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TA
91466125 TACTTAAACA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 37 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
TAATA
Found at i:91469782 original size:38 final size:41
Alignment explanation
Indices: 91469732--91469897 Score: 176
Period size: 46 Copynumber: 3.9 Consensus size: 41
91469722 CTGATATGAA
*
91469732 ATGTGTAAGACCATAGTTGAAAGATACCATGGCAACC-T-G
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCATAG
91469771 -TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAG
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC----AT-AG
*
91469816 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAA
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC----CAT-AG
* **
91469862 AAGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
91469898 GTGATAGAAA
Statistics
Matches: 110, Mismatches: 5, Indels: 17
0.83 0.04 0.13
Matches are distributed among these distances:
38 35 0.32
43 1 0.01
45 1 0.01
46 72 0.65
50 1 0.01
ACGTcount: A:0.37, C:0.16, G:0.25, T:0.22
Consensus pattern (41 bp):
ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCATAG
Found at i:91469838 original size:46 final size:46
Alignment explanation
Indices: 91469774--91469941 Score: 239
Period size: 46 Copynumber: 3.7 Consensus size: 46
91469764 CAACCTGTGT
* * *
91469774 GTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAGATGT
1 GTAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGA
* *
91469820 GTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGA
1 GTAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGA
*
91469866 ATAAGACCATGGTTGAAAGATACCATGGCAACGTGATA-GAAAATGA
1 GTAAGACCATGGTTGAAAGATACCATGGCAACGTGATATG-AAATGA
* * *
91469912 GTAAGACCATAGTTGAAAGACACTATGGCA
1 GTAAGACCATGGTTGAAAGATACCATGGCA
91469942 TCACGTCAAA
Statistics
Matches: 109, Mismatches: 12, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
45 1 0.01
46 108 0.99
ACGTcount: A:0.40, C:0.15, G:0.25, T:0.20
Consensus pattern (46 bp):
GTAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGA
Found at i:91473231 original size:22 final size:21
Alignment explanation
Indices: 91473172--91473214 Score: 63
Period size: 19 Copynumber: 2.1 Consensus size: 21
91473162 AATCTCTAAG
*
91473172 GATATTCAATCTT--AGATAT
1 GATATGCAATCTTGAAGATAT
91473191 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTTGAAGATAT
91473212 GAT
1 GAT
91473215 CTTGTAATCT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 12 0.57
21 9 0.43
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.37
Consensus pattern (21 bp):
GATATGCAATCTTGAAGATAT
Found at i:91475522 original size:43 final size:43
Alignment explanation
Indices: 91475474--91475559 Score: 172
Period size: 43 Copynumber: 2.0 Consensus size: 43
91475464 TAACTTTCCA
91475474 CATAAAAAATAGAAAAGTGTTAATATTTCATATTGGAAGTAAG
1 CATAAAAAATAGAAAAGTGTTAATATTTCATATTGGAAGTAAG
91475517 CATAAAAAATAGAAAAGTGTTAATATTTCATATTGGAAGTAAG
1 CATAAAAAATAGAAAAGTGTTAATATTTCATATTGGAAGTAAG
91475560 TATATCTTTC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.49, C:0.05, G:0.16, T:0.30
Consensus pattern (43 bp):
CATAAAAAATAGAAAAGTGTTAATATTTCATATTGGAAGTAAG
Found at i:91483892 original size:18 final size:18
Alignment explanation
Indices: 91483869--91483906 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
91483859 AATATATATT
91483869 AACCCAACTACCCAACCC
1 AACCCAACTACCCAACCC
*
91483887 AACCCAATTACCCAACCC
1 AACCCAACTACCCAACCC
91483905 AA
1 AA
91483907 TCATAAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.42, C:0.50, G:0.00, T:0.08
Consensus pattern (18 bp):
AACCCAACTACCCAACCC
Found at i:91483899 original size:13 final size:13
Alignment explanation
Indices: 91483883--91483907 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
91483873 CAACTACCCA
91483883 ACCCAACCCAATT
1 ACCCAACCCAATT
91483896 ACCCAACCCAAT
1 ACCCAACCCAAT
91483908 CATAAAAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.48, G:0.00, T:0.12
Consensus pattern (13 bp):
ACCCAACCCAATT
Found at i:91483957 original size:6 final size:6
Alignment explanation
Indices: 91483932--91483990 Score: 91
Period size: 6 Copynumber: 9.5 Consensus size: 6
91483922 ATAATTTAAT
*
91483932 AAATAA ATATAAA AATATAA AAATAA AAATAA AAATAA AAATAA AAATAA
1 AAATAA AAAT-AA AA-ATAA AAATAA AAATAA AAATAA AAATAA AAATAA
91483982 AAATAA AAA
1 AAATAA AAA
91483991 ACATACAATT
Statistics
Matches: 49, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
6 40 0.82
7 7 0.14
8 2 0.04
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (6 bp):
AAATAA
Found at i:91484024 original size:9 final size:9
Alignment explanation
Indices: 91484010--91484068 Score: 91
Period size: 9 Copynumber: 6.6 Consensus size: 9
91484000 TTTATACAAA
91484010 TAATTCGGT
1 TAATTCGGT
91484019 TAATTCGGT
1 TAATTCGGT
* *
91484028 TAATTTGGG
1 TAATTCGGT
91484037 TAATTCGGT
1 TAATTCGGT
*
91484046 TAATTCGAT
1 TAATTCGGT
91484055 TAATTCGGT
1 TAATTCGGT
91484064 TAATT
1 TAATT
91484069 TTATATTTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 44 1.00
ACGTcount: A:0.25, C:0.08, G:0.20, T:0.46
Consensus pattern (9 bp):
TAATTCGGT
Found at i:91489026 original size:12 final size:12
Alignment explanation
Indices: 91489009--91489043 Score: 61
Period size: 12 Copynumber: 2.8 Consensus size: 12
91488999 ATCAAAGGAA
91489009 AATAAAATAAAT
1 AATAAAATAAAT
91489021 AATAAAATAAAT
1 AATAAAATAAAT
91489033 AATAACAATAA
1 AATAA-AATAA
91489044 TGATGAAAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
12 17 0.77
13 5 0.23
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.23
Consensus pattern (12 bp):
AATAAAATAAAT
Found at i:91489057 original size:18 final size:17
Alignment explanation
Indices: 91489036--91489069 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
91489026 AATAAATAAT
91489036 AACAATAATGATGAAAAG
1 AACAATAATGAT-AAAAG
*
91489054 AACACTAATGATAAAA
1 AACAATAATGATAAAA
91489070 CATGCACATG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.62, C:0.09, G:0.12, T:0.18
Consensus pattern (17 bp):
AACAATAATGATAAAAG
Found at i:91489242 original size:3 final size:3
Alignment explanation
Indices: 91489234--91489288 Score: 110
Period size: 3 Copynumber: 18.3 Consensus size: 3
91489224 TAAACAAATA
91489234 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
91489282 AAT AAT A
1 AAT AAT A
91489289 TGTGTGTGAG
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 52 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:91489327 original size:13 final size:13
Alignment explanation
Indices: 91489309--91489333 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
91489299 TAAAGGGATA
91489309 AATAAATAAATAC
1 AATAAATAAATAC
91489322 AATAAATAAATA
1 AATAAATAAATA
91489334 TTAAGGAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.04, G:0.00, T:0.24
Consensus pattern (13 bp):
AATAAATAAATAC
Found at i:91489541 original size:3 final size:3
Alignment explanation
Indices: 91489528--91489598 Score: 133
Period size: 3 Copynumber: 23.3 Consensus size: 3
91489518 AAGGACGACA
91489528 AAT ATAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
91489574 AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT A
91489599 CTCTAAACAT
Statistics
Matches: 67, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
3 64 0.96
4 3 0.04
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
AAT
Found at i:91490823 original size:14 final size:14
Alignment explanation
Indices: 91490804--91490835 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
91490794 TTCCTTCTTT
91490804 GCAGATGTTGCAGA
1 GCAGATGTTGCAGA
91490818 GCAGATGTTGCAGA
1 GCAGATGTTGCAGA
91490832 GCAG
1 GCAG
91490836 GTGGCTAACG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.28, C:0.16, G:0.38, T:0.19
Consensus pattern (14 bp):
GCAGATGTTGCAGA
Found at i:91491444 original size:45 final size:45
Alignment explanation
Indices: 91491377--91492363 Score: 221
Period size: 45 Copynumber: 21.6 Consensus size: 45
91491367 TAACTCGTAG
*
91491377 CTTTAATCTGTTCCACTGCAACTTCAAGA-AAATGAGATTTGCTAT
1 CTTTAATCTGCTCCACTGCAACTTCAAGAGAAATGAGATTTG-TAT
* * * * *
91491422 CTTTAGTCTGCTCCATTGCAACTTC-AGAGAGATAAGGTTTG--T
1 CTTTAATCTGCTCCACTGCAACTTCAAGAGAAATGAGATTTGTAT
* * * * *
91491464 CTTCAATCTACTCCACTGCAACTTTAGGGAGATAA-GATTTGTAATTTGTAG
1 CTTTAATCTGCTCCACTGCAACTTCA-AGAGA-AATGA---G--ATTTGTAT
** *
91491515 CTTTAATCTATTCCACTGCAACTTC-AGGGAAATGAGATTTGCTAT
1 CTTTAATCTGCTCCACTGCAACTTCAAGAGAAATGAGATTTG-TAT
* * * * * * * *
91491560 CTTCAGTCTGCTCCACTGCAACTTC-AGGGAGATAAGACTTATAA
1 CTTTAATCTGCTCCACTGCAACTTCAAGAGAAATGAGATTTGTAT
* * * * *
91491604 CTTTAACCTGCTCCACTGCAACTTC-AGGGAGATAAGGTTTGT-T
1 CTTTAATCTGCTCCACTGCAACTTCAAGAGAAATGAGATTTGTAT
* * * * * * *
91491647 -TTCAATCTGCTTCACTACAACTT-TAGGGAGATAAGATTCGCCATGATAT
1 CTTTAATCTGCTCCACTGCAACTTCAAGAGAAATGAGATT-----TG-TAT
* * ** * * *
91491696 ATTTAATCCGAC-CTGCTGCAACTTC-AGAGGTATAGGACTTGTA-ACTCGTAG
1 CTTTAATCTG-CTCCACTGCAACTTCAAGA-G-A-A--A--TG-AGATTTGTAT
* * * *
91491747 CTTTAATCTGTTCCACTGCAATTTC-AGGGAAATAAGATTTGCTAT
1 CTTTAATCTGCTCCACTGCAACTTCAAGAGAAATGAGATTTG-TAT
* * * * * * * *
91491792 CTTTAGTCTGCTCCATTGCAACTTC-AGGGAGATAAGACTTATAA
1 CTTTAATCTGCTCCACTGCAACTTCAAGAGAAATGAGATTTGTAT
* * * * * * *
91491836 CTTCAA-CTTACTCCACTGCAAC-TCCAGGGAGATAAG-TTT-TGT
1 CTTTAATC-TGCTCCACTGCAACTTCAAGAGAAATGAGATTTGTAT
*
91491878 CTTCAATCTGCTCCACTGCAACTTCAGAGAGATAA-GATTTGTAATTTGTAGT
1 CTTTAATCTGCTCCACTGCAACTTCA-AGAGA-AATGA---G--ATTTGTA-T
** *
91491930 -TTTAATCTATTCCACTGCAACTTC-AGGGAAATGAGATTTGCTAT
1 CTTTAATCTGCTCCACTGCAACTTCAAGAGAAATGAGATTTG-TAT
* * * * * * * * *
91491974 CTTCAGTCTGCTCCACTACAACTTC-AGGGAGATAAGACTTATAA
1 CTTTAATCTGCTCCACTGCAACTTCAAGAGAAATGAGATTTGTAT
* * * *
91492018 CTTTAACCTGCTCCACTACAACTTC-AG-GAAGATAAGGTTTG--T
1 CTTTAATCTGCTCCACTGCAACTTCAAGAGAA-ATGAGATTTGTAT
* ** * * * *
91492060 CTTCACCCTGCTCCACTGCAACTTTAGGGAGATAA-GATTTGTAATTTTTAG
1 CTTTAATCTGCTCCACTGCAACTTCA-AGAGA-AATGA---G--ATTTGTAT
* ** * *
91492111 CTTTAATATATTCTATTGCAACTTC-AGAGAAATGAGATTTGCTAT
1 CTTTAATCTGCTCCACTGCAACTTCAAGAGAAATGAGATTTG-TAT
* * * * * * * * *
91492156 CTTCAGTCCGCTCCACTACAACTTC-AGGGAGA-GAAGACTTATAA
1 CTTTAATCTGCTCCACTGCAACTTCAAGAGAAATG-AGATTTGTAT
* * * * *
91492200 CTTTAACCTGCTCCACTGCAACTTC-AGGGAGATAAGGTTTG--T
1 CTTTAATCTGCTCCACTGCAACTTCAAGAGAAATGAGATTTGTAT
* * * * *
91492242 CTTCAATCTGCTCCACTACAACTTCAGGGAGATAA-GATTTGTAATTTTTAG
1 CTTTAATCTGCTCCACTGCAACTTCA-AGAGA-AATGA---G--ATTTGTAT
** *
91492293 CTTTAATCTATTCCACTGCAACTTC-AGGGAAATGAGATTTGCTAT
1 CTTTAATCTGCTCCACTGCAACTTCAAGAGAAATGAGATTTG-TAT
* *
91492338 CTTTAGTCTGCTCCACTACAACTTCA
1 CTTTAATCTGCTCCACTGCAACTTCA
91492364 GGTAGATAAG
Statistics
Matches: 685, Mismatches: 176, Indels: 161
0.67 0.17 0.16
Matches are distributed among these distances:
42 116 0.17
43 11 0.02
44 176 0.26
45 192 0.28
46 6 0.01
47 6 0.01
48 10 0.01
49 34 0.05
50 21 0.03
51 105 0.15
52 3 0.00
55 1 0.00
57 3 0.00
58 1 0.00
ACGTcount: A:0.28, C:0.21, G:0.17, T:0.33
Consensus pattern (45 bp):
CTTTAATCTGCTCCACTGCAACTTCAAGAGAAATGAGATTTGTAT
Found at i:91491529 original size:138 final size:140
Alignment explanation
Indices: 91491342--91492059 Score: 433
Period size: 138 Copynumber: 5.2 Consensus size: 140
91491332 TTCGACCTAT
* * * *
91491342 TGCAACTTCAGAGG-TATAGGACTTGTAACTCGTAGCTTTAATCTGTTCCACTGCAACTTCAAGA
1 TGCAACTTCAG-GGAGATAAGATTTGTAACTCGTAGCTTTAATCTATTCCACTGCAACTTCAAGA
* * * **
91491406 AAATGAGATTTGCTATCTTTAGTCTGCTCCATTGCAACTTCAGAGAGATAAG-GTT-TGTCTTCA
65 AAATGAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGAGAGATAAGACTTATAACTTCA
*
91491469 ATCTACTCCAC
130 ACCTACTCCAC
* * * * *
91491480 TGCAACTTTAGGGAGATAAGATTTGTAATTTGTAGCTTTAATCTATTCCACTGCAACTTCAGGGA
1 TGCAACTTCAGGGAGATAAGATTTGTAACTCGTAGCTTTAATCTATTCCACTGCAACTTCAAGAA
* *
91491545 AATGAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTATAACTTTAA
66 AATGAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGAGAGATAAGACTTATAACTTCAA
*
91491610 CCTGCTCCAC
131 CCTACTCCAC
* * * * * * *
91491620 TGCAACTTCAGGGAGATAAGGTTTG----T--T---TTCAATCTGCTT-CACTACAACTTTAGGG
1 TGCAACTTCAGGGAGATAAGATTTGTAACTCGTAGCTTTAATCT-ATTCCACTGCAACTTCAAGA
* * * * * * * ** * *
91491675 AGATAAGATTCGCCATGATATATTTAATCCGAC-CTGCTGCAACTTCAGAG-GTATAGGACTTGT
65 AAATGAGATT-----TGCTATCTTCAGTCTG-CTCCACTGCAACTTCAGAGAG-ATAAGACTTAT
* **
91491738 AACTCGTAGCTTTAATCTGTTCCAC
123 AACT--T--C---AACCTACTCCAC
* * * * ** * * *
91491763 TGCAATTTCAGGGAAATAAGATTTG-----C-TATCTTTAGTCTGCTCCATTGCAACTTCAGGGA
1 TGCAACTTCAGGGAGATAAGATTTGTAACTCGTAGCTTTAATCTATTCCACTGCAACTTCAAGAA
* * * * * * * * * * **
91491822 GATAAGACTT-ATAACTTCA-ACTTACTCCACTGCAACTCCAGGGAGATAAG--TTTTGTCTTCA
66 AATGAGATTTGCTATCTTCAGTC-TGCTCCACTGCAACTTCAGAGAGATAAGACTTATAACTTCA
* *
91491883 ATCTGCTCCAC
130 ACCTACTCCAC
* * * * * *
91491894 TGCAACTTCAGAGAGATAAGATTTGTAATTTGTAGTTTTAATCTATTCCACTGCAACTTCAGGGA
1 TGCAACTTCAGGGAGATAAGATTTGTAACTCGTAGCTTTAATCTATTCCACTGCAACTTCAAGAA
* * *
91491959 AATGAGATTTGCTATCTTCAGTCTGCTCCACTACAACTTCAGGGAGATAAGACTTATAACTTTAA
66 AATGAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGAGAGATAAGACTTATAACTTCAA
*
91492024 CCTGCTCCAC
131 CCTACTCCAC
* * *
91492034 TACAACTTCAGGAAGATAAGGTTTGT
1 TGCAACTTCAGGGAGATAAGATTTGT
91492060 CTTCACCCTG
Statistics
Matches: 451, Mismatches: 93, Indels: 70
0.73 0.15 0.11
Matches are distributed among these distances:
131 62 0.14
132 2 0.00
134 2 0.00
135 1 0.00
136 40 0.09
137 37 0.08
138 139 0.31
139 5 0.01
140 99 0.22
141 2 0.00
143 33 0.07
145 1 0.00
146 28 0.06
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.33
Consensus pattern (140 bp):
TGCAACTTCAGGGAGATAAGATTTGTAACTCGTAGCTTTAATCTATTCCACTGCAACTTCAAGAA
AATGAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGAGAGATAAGACTTATAACTTCAA
CCTACTCCAC
Found at i:91491579 original size:96 final size:88
Alignment explanation
Indices: 91491432--91491684 Score: 260
Period size: 89 Copynumber: 2.8 Consensus size: 88
91491422 CTTTAGTCTG
* * * * *
91491432 CTCCATTGCAACTTCAGAGAGATAAGGTTTG-TCTTCAATCTACTCCACTGCAACTTTAGGGAGA
1 CTCCACTGCAACTTCAGGGAAATAAGATTTGTTCTTCAATCTGCTCCACTGCAACTTTAGGGAGA
* *
91491496 TAAGATTTGTAATTTGTAGCTTTAATCTA
66 TAAGATTT-T-A----TAACTTTAACCTA
* * * *
91491525 TTCCACTGCAACTTCAGGGAAATGAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGA
1 CTCCACTGCAACTTCAGGGAAATAAGATTTG-T-TCTTCAATCTGCTCCACTGCAACTTTAGGGA
* *
91491590 GATAAGA-CTTATAACTTTAACCTG
64 GATAAGATTTTATAACTTTAACCTA
* * * *
91491614 CTCCACTGCAACTTCAGGGAGATAAGGTTTGTT-TTCAATCTGCTTCACTACAACTTTAGGGAGA
1 CTCCACTGCAACTTCAGGGAAATAAGATTTGTTCTTCAATCTGCTCCACTGCAACTTTAGGGAGA
91491678 TAAGATT
66 TAAGATT
91491685 CGCCATGATA
Statistics
Matches: 134, Mismatches: 22, Indels: 14
0.79 0.13 0.08
Matches are distributed among these distances:
86 32 0.24
87 1 0.01
88 1 0.01
89 37 0.28
93 26 0.19
94 1 0.01
95 1 0.01
96 35 0.26
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33
Consensus pattern (88 bp):
CTCCACTGCAACTTCAGGGAAATAAGATTTGTTCTTCAATCTGCTCCACTGCAACTTTAGGGAGA
TAAGATTTTATAACTTTAACCTA
Found at i:91491837 original size:96 final size:94
Alignment explanation
Indices: 91491744--91492460 Score: 620
Period size: 86 Copynumber: 7.9 Consensus size: 94
91491734 TTGTAACTCG
* * * *
91491744 TAGCTTTAATCTGTTCCACTGCAATTTCAGGGAAATAAGATTTGCTATCTTTAGTCTGCTCCATT
1 TAGCTTTAATCTATTCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCACT
*
91491809 GCAACTTCAGGGAGATAAGACTTAT-A--
66 ACAACTTCAGGGAGATAAGACTTATAATT
* * * * * *
91491835 -A-CTTCAA-CTTACTCCACTGCAACTCCAGGGAGATAAG-TTT--TGTCTTCAATCTGCTCCAC
1 TAGCTTTAATC-TATTCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCAC
* * * *
91491894 TGCAACTTCAGAGAGATAAGATTTGTAATTT
65 TACAACTTCAGGGAGATAAGACTTATAA-TT
* *
91491925 GTAGTTTTAATCTATTCCACTGCAACTTCAGGGAAATGAGATTTGCTATCTTCAGTCTGCTCCAC
1 -TAGCTTTAATCTATTCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCAC
91491990 TACAACTTCAGGGAGATAAGACTTAT-A--
65 TACAACTTCAGGGAGATAAGACTTATAATT
* ** * * **
91492017 -A-CTTTAACCTGCTCCACTACAACTTCA-GGAAGATAAGGTTTG---TCTTCACCCTGCTCCAC
1 TAGCTTTAATCTATTCCACTGCAACTTCAGGGAA-ATAAGATTTGCTATCTTCAGTCTGCTCCAC
* * * *
91492076 TGCAACTTTAGGGAGATAAGATTTGTAATTTT
65 TACAACTTCAGGGAGATAAGACTTATAA--TT
* * * * * *
91492108 TAGCTTTAATATATTCTATTGCAACTTCAGAGAAATGAGATTTGCTATCTTCAGTCCGCTCCACT
1 TAGCTTTAATCTATTCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCACT
*
91492173 ACAACTTCAGGGAGAGAAGACTTAT-A--
66 ACAACTTCAGGGAGATAAGACTTATAATT
* ** * * *
91492199 -A-CTTTAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTG---TCTTCAATCTGCTCCACT
1 TAGCTTTAATCTATTCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCACT
* *
91492259 ACAACTTCAGGGAGATAAGATTTGTAATTTT
66 ACAACTTCAGGGAGATAAGACTTATAA--TT
* *
91492290 TAGCTTTAATCTATTCCACTGCAACTTCAGGGAAATGAGATTTGCTATCTTTAGTCTGCTCCACT
1 TAGCTTTAATCTATTCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCACT
*
91492355 ACAACTTCAGGTAGATAAGAC-T-T-A-T
66 ACAACTTCAGGGAGATAAGACTTATAATT
* * * * * * * *
91492380 GA-CTTTAACCTGTTCCATTGCAACTTTAGGGAGATAAGGTTTG---TCTTCAATCTGCTCCACT
1 TAGCTTTAATCTATTCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCACT
* *
91492441 ACAACGTCAGGAAGATAAGA
66 ACAACTTCAGGGAGATAAGA
91492461 TTTGCAATTT
Statistics
Matches: 499, Mismatches: 93, Indels: 73
0.75 0.14 0.11
Matches are distributed among these distances:
86 147 0.29
87 3 0.01
88 8 0.02
89 122 0.24
90 5 0.01
92 3 0.01
93 91 0.18
94 8 0.02
95 3 0.01
96 109 0.22
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (94 bp):
TAGCTTTAATCTATTCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCACT
ACAACTTCAGGGAGATAAGACTTATAATT
Found at i:91491945 original size:182 final size:182
Alignment explanation
Indices: 91491711--91492472 Score: 1123
Period size: 182 Copynumber: 4.2 Consensus size: 182
91491701 ATCCGACCTG
* * * * * *
91491711 CTGCAACTTCAGAG-GTATAGGACTTGTAACTCGTAGCTTTAATCTGTTCCACTGCAATTTCAGG
1 CTGCAACTTCAGAGAG-ATAAGATTTGTAATTTGTAGCTTTAATCTATTCCACTGCAACTTCAGG
* * * * *
91491775 GAAATAAGATTTGCTATCTTTAGTCTGCTCCATTGCAACTTCAGGGAGATAAGACTTATAACTTC
65 GAAATGAGATTTGCTATCTTCAGTCTGCTCCACTACAACTTCAGGGAGATAAGACTTATAACTTT
* * * *
91491840 AACTTACTCCACTGCAACTCCAGGGAGATAAGTTTTGTCTTCAATCTGCTCCA
130 AACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTCTTCAATCTGCTCCA
*
91491893 CTGCAACTTCAGAGAGATAAGATTTGTAATTTGTAGTTTTAATCTATTCCACTGCAACTTCAGGG
1 CTGCAACTTCAGAGAGATAAGATTTGTAATTTGTAGCTTTAATCTATTCCACTGCAACTTCAGGG
91491958 AAATGAGATTTGCTATCTTCAGTCTGCTCCACTACAACTTCAGGGAGATAAGACTTATAACTTTA
66 AAATGAGATTTGCTATCTTCAGTCTGCTCCACTACAACTTCAGGGAGATAAGACTTATAACTTTA
* * **
91492023 ACCTGCTCCACTACAACTTCAGGAAGATAAGGTTTGTCTTCACCCTGCTCCA
131 ACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTCTTCAATCTGCTCCA
* * * * * * *
91492075 CTGCAACTTTAGGGAGATAAGATTTGTAATTTTTAGCTTTAATATATTCTATTGCAACTTCAGAG
1 CTGCAACTTCAGAGAGATAAGATTTGTAATTTGTAGCTTTAATCTATTCCACTGCAACTTCAGGG
* *
91492140 AAATGAGATTTGCTATCTTCAGTCCGCTCCACTACAACTTCAGGGAGAGAAGACTTATAACTTTA
66 AAATGAGATTTGCTATCTTCAGTCTGCTCCACTACAACTTCAGGGAGATAAGACTTATAACTTTA
91492205 ACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTCTTCAATCTGCTCCA
131 ACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTCTTCAATCTGCTCCA
* * *
91492257 CTACAACTTCAGGGAGATAAGATTTGTAATTTTTAGCTTTAATCTATTCCACTGCAACTTCAGGG
1 CTGCAACTTCAGAGAGATAAGATTTGTAATTTGTAGCTTTAATCTATTCCACTGCAACTTCAGGG
* * *
91492322 AAATGAGATTTGCTATCTTTAGTCTGCTCCACTACAACTTCAGGTAGATAAGACTTATGACTTTA
66 AAATGAGATTTGCTATCTTCAGTCTGCTCCACTACAACTTCAGGGAGATAAGACTTATAACTTTA
* * *
91492387 ACCTGTTCCATTGCAACTTTAGGGAGATAAGGTTTGTCTTCAATCTGCTCCA
131 ACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTCTTCAATCTGCTCCA
* * *
91492439 CTACAACGTCAG-GAAGATAAGATTTGCAATTTGT
1 CTGCAACTTCAGAG-AGATAAGATTTGTAATTTGT
91492473 TAAATTTCAA
Statistics
Matches: 527, Mismatches: 51, Indels: 4
0.91 0.09 0.01
Matches are distributed among these distances:
181 1 0.00
182 525 1.00
183 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (182 bp):
CTGCAACTTCAGAGAGATAAGATTTGTAATTTGTAGCTTTAATCTATTCCACTGCAACTTCAGGG
AAATGAGATTTGCTATCTTCAGTCTGCTCCACTACAACTTCAGGGAGATAAGACTTATAACTTTA
ACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTCTTCAATCTGCTCCA
Found at i:91493965 original size:5 final size:6
Alignment explanation
Indices: 91493950--91494002 Score: 54
Period size: 6 Copynumber: 8.8 Consensus size: 6
91493940 CTTCTTTCTC
* * * *
91493950 TTTTTA TTTTTA TTTTTA TTTTTTA TTCTT- TTTTTA CTTTTG TTTTTC
1 TTTTTA TTTTTA TTTTTA -TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
91493998 TTTTT
1 TTTTT
91494003 GGCTGTCTTC
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
5 4 0.10
6 29 0.74
7 6 0.15
ACGTcount: A:0.09, C:0.06, G:0.02, T:0.83
Consensus pattern (6 bp):
TTTTTA
Found at i:91493972 original size:19 final size:19
Alignment explanation
Indices: 91493932--91494002 Score: 67
Period size: 19 Copynumber: 3.7 Consensus size: 19
91493922 TGTTTAGTTG
*
91493932 TTTTTATTC-TTCTTT-CT
1 TTTTTATTCTTTTTTTACT
*
91493949 CTTTTTATTTTTATTTTTA-T
1 -TTTTTATTCTT-TTTTTACT
91493969 TTTTTATTCTTTTTTTACT
1 TTTTTATTCTTTTTTTACT
*
91493988 TTTGTTTTTCTTTTT
1 TTT-TTATTCTTTTT
91494003 GGCTGTCTTC
Statistics
Matches: 44, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
18 14 0.32
19 15 0.34
20 15 0.34
ACGTcount: A:0.08, C:0.10, G:0.01, T:0.80
Consensus pattern (19 bp):
TTTTTATTCTTTTTTTACT
Found at i:91494002 original size:30 final size:30
Alignment explanation
Indices: 91493932--91494002 Score: 81
Period size: 30 Copynumber: 2.4 Consensus size: 30
91493922 TGTTTAGTTG
* *
91493932 TTTTTATTCTTCT-TTCTCTTTTTATTTTTA
1 TTTTTATT-TTTTATTCTCTTTTTACTTTTA
* *
91493962 TTTTTATTTTTTATTCTTTTTTTACTTTTG
1 TTTTTATTTTTTATTCTCTTTTTACTTTTA
*
91493992 TTTTTCTTTTT
1 TTTTTATTTTT
91494003 GGCTGTCTTC
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
29 3 0.09
30 32 0.91
ACGTcount: A:0.08, C:0.10, G:0.01, T:0.80
Consensus pattern (30 bp):
TTTTTATTTTTTATTCTCTTTTTACTTTTA
Found at i:91498939 original size:13 final size:13
Alignment explanation
Indices: 91498921--91498945 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
91498911 TAAAGAGATA
91498921 AATAAATAAATAC
1 AATAAATAAATAC
91498934 AATAAATAAATA
1 AATAAATAAATA
91498946 TTAAGGAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.04, G:0.00, T:0.24
Consensus pattern (13 bp):
AATAAATAAATAC
Found at i:91499066 original size:16 final size:16
Alignment explanation
Indices: 91499020--91499067 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
91499010 AGTACAATTT
91499020 ATAATAA-AATACATGA
1 ATAATAATAATA-ATGA
* * *
91499036 ATAATGATGACAATGA
1 ATAATAATAATAATGA
91499052 ATAATAATAATAATGA
1 ATAATAATAATAATGA
91499068 GAACAATATA
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
16 23 0.92
17 2 0.08
ACGTcount: A:0.58, C:0.04, G:0.10, T:0.27
Consensus pattern (16 bp):
ATAATAATAATAATGA
Found at i:91503391 original size:2 final size:2
Alignment explanation
Indices: 91503384--91503417 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
91503374 TTATTTGTTC
91503384 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
91503418 TCCTTGGATT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:91503522 original size:3 final size:3
Alignment explanation
Indices: 91503514--91503540 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
91503504 CCCATAACAT
91503514 ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA
91503541 GTTATTATTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:91503548 original size:3 final size:3
Alignment explanation
Indices: 91503542--91503587 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
91503532 ATAATAATAG
91503542 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
91503588 ATGTTTTGAT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:91515794 original size:45 final size:45
Alignment explanation
Indices: 91515704--91515872 Score: 205
Period size: 45 Copynumber: 3.8 Consensus size: 45
91515694 ATTACAAGTT
* * *
91515704 TTATCTCCCTGAAATTCCAGTAGAGTAGATCGAAGATAGCAAATC
1 TTATCTCCCTGAAGTTGCAGTAGAGTAGATTGAAGATAGCAAATC
* * * **
91515749 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGGTAGTGAATC
1 TTATCTCCCTGAAGTTGCAGTAGAGTAGATTGAAGATAGCAAATC
** * * *
91515794 TTATCTCCCCAAAGTTACAGTAGAGTAGATTGAAGCTA-CAAATT
1 TTATCTCCCTGAAGTTGCAGTAGAGTAGATTGAAGATAGCAAATC
*
91515838 TTATCTCCCTGAAGTTGCAGTAGAGTGGATTGAAG
1 TTATCTCCCTGAAGTTGCAGTAGAGTAGATTGAAG
91515873 TGACAAATTC
Statistics
Matches: 103, Mismatches: 21, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
44 34 0.33
45 69 0.67
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.29
Consensus pattern (45 bp):
TTATCTCCCTGAAGTTGCAGTAGAGTAGATTGAAGATAGCAAATC
Found at i:91515836 original size:89 final size:90
Alignment explanation
Indices: 91515704--91515872 Score: 243
Period size: 89 Copynumber: 1.9 Consensus size: 90
91515694 ATTACAAGTT
* *
91515704 TTATCTCCCTGAAATTCCAGTAGAGTAGATCGAAGATAGCAAATCTTATCTCCCTGAAGTTGCAG
1 TTATCTCCCTCAAATTACAGTAGAGTAGATCGAAGATAGCAAATCTTATCTCCCTGAAGTTGCAG
*
91515769 TGGAGCAGATTGAAGGTAGTGAATC
66 TAGAGCAGATTGAAGGTAGTGAATC
* * *
91515794 TTATCTCCC-CAAAGTTACAGTAGAGTAGATTGAAGCTA-CAAATTTTATCTCCCTGAAGTTGCA
1 TTATCTCCCTCAAA-TTACAGTAGAGTAGATCGAAGATAGCAAATCTTATCTCCCTGAAGTTGCA
**
91515857 GTAGAGTGGATTGAAG
65 GTAGAGCAGATTGAAG
91515873 TGACAAATTC
Statistics
Matches: 70, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
89 40 0.57
90 30 0.43
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.29
Consensus pattern (90 bp):
TTATCTCCCTCAAATTACAGTAGAGTAGATCGAAGATAGCAAATCTTATCTCCCTGAAGTTGCAG
TAGAGCAGATTGAAGGTAGTGAATC
Found at i:91515853 original size:44 final size:43
Alignment explanation
Indices: 91515696--91515900 Score: 196
Period size: 45 Copynumber: 4.6 Consensus size: 43
91515686 ACGTTAAAAT
* * * *
91515696 TACAAGTTTTATCTCCCTGAAATTCCAGTAGAGTAGATCGAAG
1 TACAAATTTTATCTCCCTGAAGTTGCAGTAGAGTAGATTGAAG
* * *
91515739 ATAGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGG
1 -TA-CAAATTTTATCTCCCTGAAGTTGCAGTAGAGTAGATTGAA-G
** * ** *
91515785 TAGTGAATCTTATCTCCCCAAAGTTACAGTAGAGTAGATTGAAG
1 TA-CAAATTTTATCTCCCTGAAGTTGCAGTAGAGTAGATTGAAG
*
91515829 CTACAAATTTTATCTCCCTGAAGTTGCAGTAGAGTGGATTGAAG
1 -TACAAATTTTATCTCCCTGAAGTTGCAGTAGAGTAGATTGAAG
* *
91515873 TGACAAATTCTATAC-CTCTGAAGTTGCA
1 T-ACAAATTTTAT-CTCCCTGAAGTTGCA
91515901 ATGGGTTAGA
Statistics
Matches: 133, Mismatches: 23, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
43 1 0.01
44 59 0.44
45 72 0.54
46 1 0.01
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.30
Consensus pattern (43 bp):
TACAAATTTTATCTCCCTGAAGTTGCAGTAGAGTAGATTGAAG
Found at i:91516146 original size:17 final size:18
Alignment explanation
Indices: 91516106--91516151 Score: 67
Period size: 17 Copynumber: 2.6 Consensus size: 18
91516096 TCCAGTCCAG
91516106 TTACAAACCCAAATAAAA
1 TTACAAACCCAAATAAAA
*
91516124 TCACAAACCCAAA-AAAA
1 TTACAAACCCAAATAAAA
*
91516141 TTACAAGCCCA
1 TTACAAACCCA
91516152 GTAGCCCACA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
17 13 0.52
18 12 0.48
ACGTcount: A:0.57, C:0.28, G:0.02, T:0.13
Consensus pattern (18 bp):
TTACAAACCCAAATAAAA
Found at i:91517503 original size:2 final size:2
Alignment explanation
Indices: 91517496--91517529 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
91517486 TTATTTGTTC
91517496 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
91517530 TCCTTGCATT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:91517626 original size:3 final size:3
Alignment explanation
Indices: 91517618--91517729 Score: 224
Period size: 3 Copynumber: 37.3 Consensus size: 3
91517608 TTGTCGCCCC
91517618 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
91517666 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
91517714 ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT A
91517730 ATGTTGTTAT
Statistics
Matches: 109, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 109 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:91520858 original size:53 final size:53
Alignment explanation
Indices: 91520779--91520990 Score: 311
Period size: 53 Copynumber: 4.0 Consensus size: 53
91520769 ATCATATAAA
* ** * *
91520779 GGCAAAACAGTCATTTTACCTTATAGGGGCAAAACAGTCATTTAACCACAAAG
1 GGCAAAATAGTCATTTTACCACATAGGGGCAATACAGTCATTTTACCACAAAG
*
91520832 GGAAAAATAGTCATTTTACCACATAGGGGCAATACAGTCATTTTACCACAAAG
1 GGCAAAATAGTCATTTTACCACATAGGGGCAATACAGTCATTTTACCACAAAG
* * *
91520885 GGCAAAATAGTCATTTTA-C-CATAGGGCCAATACAGTCGTTTTACCACACAG
1 GGCAAAATAGTCATTTTACCACATAGGGGCAATACAGTCATTTTACCACAAAG
* *
91520936 GGCAAAATAGTCATCTTACCACACAGGGGCAATACAGTCATTTTACCACAAAG
1 GGCAAAATAGTCATTTTACCACATAGGGGCAATACAGTCATTTTACCACAAAG
91520989 GG
1 GG
91520991 GGTCTAAGTA
Statistics
Matches: 142, Mismatches: 15, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
51 46 0.32
52 2 0.01
53 94 0.66
ACGTcount: A:0.37, C:0.22, G:0.18, T:0.23
Consensus pattern (53 bp):
GGCAAAATAGTCATTTTACCACATAGGGGCAATACAGTCATTTTACCACAAAG
Found at i:91520943 original size:104 final size:105
Alignment explanation
Indices: 91520728--91520990 Score: 332
Period size: 104 Copynumber: 2.5 Consensus size: 105
91520718 ACAGAGGGGT
* * * * * * * *
91520728 AAAACAGTCATCTTACCATAAAAGGGCGAA-ACAATCATTTTATCATATAAAGGCAAAACAGTCA
1 AAAATAGTCATCTTACCACACAGGGGC-AATACAGTCATTTTACCACA-AAGGGCAAAACAGTCA
*
91520792 TTTTACCTTATAGGGGCAAAACAGTCATTTAACCACAAAGGGA
64 TTTTACC-TATAGGGCCAAAACAGTCATTTAACCACAAAGGGA
* * *
91520835 AAAATAGTCATTTTACCACATAGGGGCAATACAGTCATTTTACCACAAAGGGCAAAATAGTCATT
1 AAAATAGTCATCTTACCACACAGGGGCAATACAGTCATTTTACCACAAAGGGCAAAACAGTCATT
* * * * *
91520900 TTACC-ATAGGGCCAATACAGTCGTTTTACCACACAGGGC
66 TTACCTATAGGGCCAAAACAGTCATTTAACCACAAAGGGA
91520939 AAAATAGTCATCTTACCACACAGGGGCAATACAGTCATTTTACCACAAAGGG
1 AAAATAGTCATCTTACCACACAGGGGCAATACAGTCATTTTACCACAAAGGG
91520991 GGTCTAAGTA
Statistics
Matches: 137, Mismatches: 18, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
104 78 0.57
106 23 0.17
107 36 0.26
ACGTcount: A:0.39, C:0.21, G:0.16, T:0.24
Consensus pattern (105 bp):
AAAATAGTCATCTTACCACACAGGGGCAATACAGTCATTTTACCACAAAGGGCAAAACAGTCATT
TTACCTATAGGGCCAAAACAGTCATTTAACCACAAAGGGA
Found at i:91520974 original size:27 final size:27
Alignment explanation
Indices: 91520717--91520991 Score: 245
Period size: 27 Copynumber: 10.4 Consensus size: 27
91520707 AAACATATAT
* * *
91520717 CACAGAGGGGTAAAACAGTCATCTTAC
1 CACATAGGGGCAAAACAGTCATTTTAC
* * * * * *
91520744 CATAAAAGGGCGAAACAATCATTTTAT
1 CACATAGGGGCAAAACAGTCATTTTAC
* **
91520771 CATATAAAGGCAAAACAGTCATTTTAC
1 CACATAGGGGCAAAACAGTCATTTTAC
** *
91520798 CTTATAGGGGCAAAACAGTCATTTAAC
1 CACATAGGGGCAAAACAGTCATTTTAC
* * *
91520825 CACA-AAGGGAAAAATAGTCATTTTAC
1 CACATAGGGGCAAAACAGTCATTTTAC
*
91520851 CACATAGGGGCAATACAGTCATTTTAC
1 CACATAGGGGCAAAACAGTCATTTTAC
* *
91520878 CACA-AAGGGCAAAATAGTCATTTTA-
1 CACATAGGGGCAAAACAGTCATTTTAC
* * *
91520903 C-CATAGGGCCAATACAGTCGTTTTAC
1 CACATAGGGGCAAAACAGTCATTTTAC
* * *
91520929 CACACA-GGGCAAAATAGTCATCTTAC
1 CACATAGGGGCAAAACAGTCATTTTAC
* *
91520955 CACACAGGGGCAATACAGTCATTTTAC
1 CACATAGGGGCAAAACAGTCATTTTAC
*
91520982 CACAAAGGGG
1 CACATAGGGG
91520992 GTCTAAGTAC
Statistics
Matches: 198, Mismatches: 45, Indels: 10
0.78 0.18 0.04
Matches are distributed among these distances:
24 2 0.01
25 17 0.09
26 62 0.31
27 117 0.59
ACGTcount: A:0.39, C:0.21, G:0.18, T:0.23
Consensus pattern (27 bp):
CACATAGGGGCAAAACAGTCATTTTAC
Found at i:91526290 original size:2 final size:2
Alignment explanation
Indices: 91526283--91526311 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
91526273 ATGATTTGTG
91526283 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
91526312 AGTTAAAATG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:91533796 original size:2 final size:2
Alignment explanation
Indices: 91533789--91533817 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
91533779 ATGATTTGTG
91533789 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
91533818 AGTTAAAATG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:91536908 original size:9 final size:9
Alignment explanation
Indices: 91536878--91536918 Score: 57
Period size: 10 Copynumber: 4.4 Consensus size: 9
91536868 TTATTAACTT
91536878 AAAATAT-A
1 AAAATATGA
91536886 AAAATTATGA
1 AAAA-TATGA
91536896 AAAACTATGA
1 AAAA-TATGA
91536906 AAAATATGA
1 AAAATATGA
91536915 AAAA
1 AAAA
91536919 GAGGTTACTT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
8 4 0.13
9 12 0.40
10 14 0.47
ACGTcount: A:0.68, C:0.02, G:0.07, T:0.22
Consensus pattern (9 bp):
AAAATATGA
Found at i:91541656 original size:24 final size:23
Alignment explanation
Indices: 91541629--91541689 Score: 70
Period size: 24 Copynumber: 2.5 Consensus size: 23
91541619 ATATAGTATT
91541629 TAAAAATATATACAT-AAGATGGTA
1 TAAAAATATATACATGAA-AT-GTA
*
91541653 TAAAAATATGTACATGGAAATGTA
1 TAAAAATATATACAT-GAAATGTA
91541677 TAAGAAATATATA
1 TAA-AAATATATA
91541690 TAACTAGTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
24 20 0.62
25 10 0.31
26 2 0.06
ACGTcount: A:0.54, C:0.03, G:0.13, T:0.30
Consensus pattern (23 bp):
TAAAAATATATACATGAAATGTA
Found at i:91541878 original size:20 final size:21
Alignment explanation
Indices: 91541838--91541916 Score: 81
Period size: 21 Copynumber: 3.6 Consensus size: 21
91541828 TATATAATAG
91541838 TATTAGAAATATACAATATAA
1 TATTAGAAATATACAATATAA
91541859 TATTAGAAATATAC-ATATAA
1 TATTAGAAATATACAATATAA
* *
91541879 TAGTATAAAAAATATATAACTAATAA
1 TA-T-T-AGAAATATACAA-T-ATAA
91541905 TATTA-AAATATA
1 TATTAGAAATATA
91541917 TATAATAATA
Statistics
Matches: 50, Mismatches: 2, Indels: 11
0.79 0.03 0.17
Matches are distributed among these distances:
20 8 0.16
21 15 0.30
22 8 0.16
23 9 0.18
24 2 0.04
25 2 0.04
26 6 0.12
ACGTcount: A:0.58, C:0.04, G:0.04, T:0.34
Consensus pattern (21 bp):
TATTAGAAATATACAATATAA
Found at i:91541902 original size:23 final size:21
Alignment explanation
Indices: 91541823--91541939 Score: 83
Period size: 23 Copynumber: 5.2 Consensus size: 21
91541813 ACACATATAT
* *
91541823 ATATATATATAATAGTATTAGAA
1 ATATATA-ATAATA-TATAAAAA
* * *
91541846 ATATACAAT-ATAATATTAGAA
1 ATATATAATAAT-ATATAAAAA
*
91541867 ATATACATATAATAGTATAAAAA
1 ATATATA-ATAATA-TATAAAAA
*
91541890 ATATATAACTAATAATATTAAAAT
1 ATATATAA-TAAT-ATA-TAAAAA
*
91541914 ATATATAATAATATATATAAA
1 ATATATAATAATATATAAAAA
91541935 ATATA
1 ATATA
91541940 ATATTAAAAA
Statistics
Matches: 80, Mismatches: 7, Indels: 16
0.78 0.07 0.16
Matches are distributed among these distances:
21 26 0.32
22 10 0.12
23 30 0.38
24 14 0.17
ACGTcount: A:0.58, C:0.03, G:0.03, T:0.36
Consensus pattern (21 bp):
ATATATAATAATATATAAAAA
Found at i:91541907 original size:12 final size:12
Alignment explanation
Indices: 91541866--91541986 Score: 78
Period size: 12 Copynumber: 10.1 Consensus size: 12
91541856 TAATATTAGA
*
91541866 AATATACAT-AT
1 AATATATATAAT
91541877 AATAGTATA-AA-
1 AATA-TATATAAT
91541888 AA-ATATATAACT
1 AATATATATAA-T
91541900 AATA-ATATTAA-
1 AATATATA-TAAT
91541911 AATATATATAAT
1 AATATATATAAT
91541923 AATATATATAA-
1 AATATATATAAT
*
91541934 AATATAATATTAAA
1 AATAT-ATA-TAAT
91541948 AACT-TATATACAT
1 AA-TATATATA-AT
* *
91541961 AACATATATGAAA
1 AATATATAT-AAT
91541974 AATATATATAAT
1 AATATATATAAT
91541986 A
1 A
91541987 TAATATTAAA
Statistics
Matches: 88, Mismatches: 6, Indels: 31
0.70 0.05 0.25
Matches are distributed among these distances:
9 4 0.05
10 3 0.03
11 18 0.20
12 31 0.35
13 27 0.31
14 4 0.05
15 1 0.01
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.35
Consensus pattern (12 bp):
AATATATATAAT
Found at i:91541978 original size:22 final size:23
Alignment explanation
Indices: 91541953--91542014 Score: 72
Period size: 22 Copynumber: 2.7 Consensus size: 23
91541943 TTAAAAACTT
*
91541953 ATATACATAACATATATGAAAA-
1 ATATACATAATATATATGAAAAC
* *
91541975 ATATATATAATATAATATTAAAAC
1 ATATACATAATAT-ATATGAAAAC
*
91541999 ATTTACATAATATATA
1 ATATACATAATATATA
91542015 CATATTAGAA
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
22 11 0.33
23 11 0.33
24 11 0.33
ACGTcount: A:0.56, C:0.06, G:0.02, T:0.35
Consensus pattern (23 bp):
ATATACATAATATATATGAAAAC
Found at i:91541980 original size:13 final size:12
Alignment explanation
Indices: 91541882--91541984 Score: 79
Period size: 12 Copynumber: 8.4 Consensus size: 12
91541872 CATATAATAG
91541882 TATAAAAA-ATA
1 TATAAAAATATA
*
91541893 TATAACTAATA-A
1 TATAA-AAATATA
*
91541905 TATTAAAATATA
1 TATAAAAATATA
*
91541917 TATAATAATATA
1 TATAAAAATATA
91541929 TAT-AAAATATAA
1 TATAAAAATAT-A
91541941 TATTAAAAACT-TA
1 TA-TAAAAA-TATA
* *
91541954 TATACATAACATA
1 TATA-AAAATATA
91541967 TATGAAAAATATA
1 TAT-AAAAATATA
91541980 TATAA
1 TATAA
91541985 TATAATATTA
Statistics
Matches: 72, Mismatches: 10, Indels: 19
0.71 0.10 0.19
Matches are distributed among these distances:
11 15 0.21
12 28 0.39
13 22 0.31
14 6 0.08
15 1 0.01
ACGTcount: A:0.60, C:0.04, G:0.01, T:0.35
Consensus pattern (12 bp):
TATAAAAATATA
Found at i:91542012 original size:24 final size:24
Alignment explanation
Indices: 91541934--91542012 Score: 81
Period size: 24 Copynumber: 3.2 Consensus size: 24
91541924 ATATATATAA
91541934 AATATAATATTAAAAACTTATATACAT
1 AATATAATATT-AAAAC--ATATACAT
* * *
91541961 AACAT-ATATGAAAA-ATATATAT
1 AATATAATATTAAAACATATACAT
*
91541983 AATATAATATTAAAACATTTACAT
1 AATATAATATTAAAACATATACAT
91542007 AATATA
1 AATATA
91542013 TACATATTAG
Statistics
Matches: 43, Mismatches: 7, Indels: 7
0.75 0.12 0.12
Matches are distributed among these distances:
22 11 0.26
23 8 0.19
24 12 0.28
25 4 0.09
26 4 0.09
27 4 0.09
ACGTcount: A:0.57, C:0.06, G:0.01, T:0.35
Consensus pattern (24 bp):
AATATAATATTAAAACATATACAT
Found at i:91542169 original size:17 final size:16
Alignment explanation
Indices: 91542141--91542174 Score: 59
Period size: 17 Copynumber: 2.1 Consensus size: 16
91542131 CTATATATAA
91542141 ATATATATATACATAC
1 ATATATATATACATAC
91542157 ATATATAATATACATAC
1 ATATAT-ATATACATAC
91542174 A
1 A
91542175 CTAATATTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.35
17 11 0.65
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.35
Consensus pattern (16 bp):
ATATATATATACATAC
Found at i:91542190 original size:3 final size:3
Alignment explanation
Indices: 91542176--91542338 Score: 70
Period size: 3 Copynumber: 53.7 Consensus size: 3
91542166 ATACATACAC
* * *
91542176 TAA TAT TAA TAA TAA TAA TAA -AA CTAGA -AA TAA TAA TCAT TAG TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA -TA-A TAA TAA TAA T-AA TAA TAA
* * ** * *
91542222 TAA TAA TACGT TAA AAA TAA TTAA T-A TGT TAA TAA AAA TAA TAG TAA
1 TAA TAA TA--A TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * *
91542269 TGAA -AA TAA TAC TAA CAG TAA TAA TAA -AGA TAA TAA TAGA -AA TAA
1 T-AA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TA-A TAA TAA
* *
91542314 -AA TAA TAG TAA TAA TAT TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA
91542339 TGTAAAAAAG
Statistics
Matches: 118, Mismatches: 26, Indels: 32
0.67 0.15 0.18
Matches are distributed among these distances:
2 11 0.09
3 94 0.80
4 10 0.08
5 3 0.03
ACGTcount: A:0.60, C:0.03, G:0.06, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:91544296 original size:87 final size:86
Alignment explanation
Indices: 91544115--91544504 Score: 347
Period size: 87 Copynumber: 4.5 Consensus size: 86
91544105 GTGATCCTGA
** * * * ** * *
91544115 GCTCAACTCATTTCTCGCAATATGAATTGACTCTTTAAAAACAGACATTAAAAACAGAAATTGAA
1 GCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAACTTA-ATTGAAAATAGAAATTGAA
* ** *
91544180 AATAGCTCAGCGCGTGAGCCAAG
64 AATACCTCAGCATGTGACCCAAG
* * * * *
91544203 GCTCAACTTACTTCTCACAATATGAGTTGGTTTTTG-AAACTTAATTTGAAAAGTAGAATTTGAA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACTTAA-TTGAAAA-TAGAAATTGAA
*
91544267 AATACCTCGGCATGTGACCCAAG
64 AATACCTCAGCATGTGACCCAAG
* * *
91544290 GCTCAACTCACCTCTCGTAATATGAGTTAATTTTTGAAAAATATAAATTGAAAAAATAGAAATTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACT-T-AATTG--AAAATAGAAATTG
* * *
91544355 AAAATAGCTCAGC--GTGCCCCGAG
62 AAAATACCTCAGCATGTGACCCAAG
* * *
91544378 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACATGAATT-AAAACAGAAATTGGAA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAC-TTAATTGAAAATAGAAATTGAAA
* * *
91544442 ATACCTCAGTATGTGAACCGAG
65 ATACCTCAGCATGTGACCCAAG
* * * *
91544464 GTTCAACTTATCTCTCGCAATGTGAGTTGATTTTTTGAAAA
1 GCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAA
91544505 ACAGAAATTG
Statistics
Matches: 248, Mismatches: 43, Indels: 23
0.79 0.14 0.07
Matches are distributed among these distances:
84 22 0.09
85 1 0.00
86 45 0.18
87 75 0.30
88 75 0.30
89 5 0.02
90 21 0.08
91 4 0.02
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.29
Consensus pattern (86 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACTTAATTGAAAATAGAAATTGAAAA
TACCTCAGCATGTGACCCAAG
Found at i:91544346 original size:15 final size:15
Alignment explanation
Indices: 91544326--91544358 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
91544316 TTAATTTTTG
*
91544326 AAAAATATAAATTGA
1 AAAAATAGAAATTGA
91544341 AAAAATAGAAATTGA
1 AAAAATAGAAATTGA
91544356 AAA
1 AAA
91544359 TAGCTCAGCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.70, C:0.00, G:0.09, T:0.21
Consensus pattern (15 bp):
AAAAATAGAAATTGA
Found at i:91544406 original size:175 final size:176
Alignment explanation
Indices: 91544115--91544517 Score: 451
Period size: 175 Copynumber: 2.3 Consensus size: 176
91544105 GTGATCCTGA
** * * * *
91544115 GCTCAACTCATTTCTCGCAATATGAATTGACTCTTT-AAAAACAGACATT--AAAAACAGAAATT
1 GCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTGAAAAACAGAAATTGAAAAAACAGAAATT
* * * *
91544177 GAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTTACTTCTCACAATATGAGTTGGTTTTTG-AA
66 GAAAATAGCTCA-CGCGTGACCCAAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAA
* * * * *
91544241 AC-TTAATTTGAAAAGTAGAATTTGAAAATACCTCGGCATGTGACCCAAG
130 ACATGAA-TT-AAAA-CAGAAATTGAAAATACCTCAGCATGTGAACCAAG
* * * *
91544290 GCTCAACTCACCTCTCGTAATATGAGTT-AATTTTTGAAAAATATAAATTGAAAAAATAGAAATT
1 GCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTGAAAAACAGAAATTGAAAAAACAGAAATT
* * *
91544354 GAAAATAGCTCA-GCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAA
66 GAAAATAGCTCACGCGTGACCCAAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAA
* * *
91544418 CATGAATTAAAACAGAAATTGGAAATACCTCAGTATGTGAACCGAG
131 CATGAATTAAAACAGAAATTGAAAATACCTCAGCATGTGAACCAAG
* * * * *
91544464 GTTCAACTTATCTCTCGCAATGTGAGTTGATTTTTTGAAAAACAGAAATTGAAA
1 GCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTGAAAAACAGAAATTGAAA
91544518 TTACCTCAGC
Statistics
Matches: 189, Mismatches: 33, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
174 55 0.29
175 101 0.53
176 6 0.03
177 27 0.14
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.29
Consensus pattern (176 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTGAAAAACAGAAATTGAAAAAACAGAAATT
GAAAATAGCTCACGCGTGACCCAAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAA
CATGAATTAAAACAGAAATTGAAAATACCTCAGCATGTGAACCAAG
Found at i:91544564 original size:74 final size:74
Alignment explanation
Indices: 91544426--91544577 Score: 184
Period size: 74 Copynumber: 2.0 Consensus size: 74
91544416 AACATGAATT
* * * *
91544426 AAAACAGAAATTGGAAATACCTCAGTATGTGAACCGAGGTTCAACTTATCTCTCGCAATGTGAGT
1 AAAACAGAAATTGGAAATACCTCAG-ACGTGAACCGAGGTTCAACTCACCTCTCGCAATATGAGT
*
91544491 TGATTTTTTGA
65 T-AATTTTTGA
**
91544502 AAAACAGAAATT-GAAATTACCTCAG-CGTGCCCCGAGGCTT-AACTCACCTCTCGCAATATGAG
1 AAAACAGAAATTGGAAA-TACCTCAGACGTGAACCGAGG-TTCAACTCACCTCTCGCAATATGAG
91544564 TTAATTTTTGA
64 TTAATTTTTGA
91544575 AAA
1 AAA
91544578 GTATAAATTA
Statistics
Matches: 67, Mismatches: 7, Indels: 7
0.83 0.09 0.09
Matches are distributed among these distances:
73 11 0.16
74 30 0.45
75 6 0.09
76 20 0.30
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.29
Consensus pattern (74 bp):
AAAACAGAAATTGGAAATACCTCAGACGTGAACCGAGGTTCAACTCACCTCTCGCAATATGAGTT
AATTTTTGA
Found at i:91544731 original size:74 final size:73
Alignment explanation
Indices: 91544610--91544819 Score: 236
Period size: 74 Copynumber: 2.9 Consensus size: 73
91544600 GGAAGAACAG
* **
91544610 AAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTT
91544675 GAAAAATAA
65 GAAAAATAA
* *
91544684 AAATTGAAATTACCTCAGCGTGCCCCGAGGCTTAACTCACCTCTCGCAATATGAGTTGATTTTTG
1 AAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
* *
91544749 AAAAGTAT
66 AAAAATAA
** ****
91544757 AAATT-AAAA-A---CAGAAAT--TAAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AAATTGAAAATACCTCAG-CGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
91544815 GAAAA
65 GAAAA
91544820 CATGAATTAA
Statistics
Matches: 120, Mismatches: 15, Indels: 9
0.83 0.10 0.06
Matches are distributed among these distances:
67 41 0.34
68 3 0.03
69 1 0.01
71 1 0.01
72 3 0.03
73 17 0.14
74 54 0.45
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.30
Consensus pattern (73 bp):
AAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
AAAAATAA
Found at i:91555607 original size:24 final size:23
Alignment explanation
Indices: 91555580--91555640 Score: 70
Period size: 24 Copynumber: 2.5 Consensus size: 23
91555570 ATATAGTATT
91555580 TAAAAATATATACAT-AAGATGGTA
1 TAAAAATATATACATGAA-AT-GTA
*
91555604 TAAAAATATGTACATGGAAATGTA
1 TAAAAATATATACAT-GAAATGTA
91555628 TAAGAAATATATA
1 TAA-AAATATATA
91555641 TAACTAGTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
24 20 0.62
25 10 0.31
26 2 0.06
ACGTcount: A:0.54, C:0.03, G:0.13, T:0.30
Consensus pattern (23 bp):
TAAAAATATATACATGAAATGTA
Found at i:91555781 original size:2 final size:2
Alignment explanation
Indices: 91555776--91555800 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
91555766 ACACACACAC
91555776 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
91555801 ATAGTATTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:91555817 original size:23 final size:22
Alignment explanation
Indices: 91555790--91555910 Score: 108
Period size: 23 Copynumber: 5.5 Consensus size: 22
91555780 ATATATATAT
*
91555790 ATATATATATAATAGTATTAGAA
1 ATATATATATAATAATATTA-AA
*
91555813 ATATACA-AT-ATAATATTAGAA
1 ATATATATATAATAATATTA-AA
* *
91555834 ATATACATATAATAGTA-TAAA
1 ATATATATATAATAATATTAAA
*
91555855 AAATATATAACTAATAATATTAAA
1 ATATATAT-A-TAATAATATTAAA
91555879 ATATATATAATAAT-ATATATAAA
1 ATATATAT-ATAATAATAT-TAAA
91555902 ATATA-ATAT
1 ATATATATAT
91555911 TAAAAACTTA
Statistics
Matches: 85, Mismatches: 7, Indels: 14
0.80 0.07 0.13
Matches are distributed among these distances:
21 28 0.33
22 13 0.15
23 31 0.36
24 13 0.15
ACGTcount: A:0.58, C:0.02, G:0.03, T:0.36
Consensus pattern (22 bp):
ATATATATATAATAATATTAAA
Found at i:91555845 original size:20 final size:21
Alignment explanation
Indices: 91555805--91555883 Score: 81
Period size: 21 Copynumber: 3.6 Consensus size: 21
91555795 TATATAATAG
91555805 TATTAGAAATATACAATATAA
1 TATTAGAAATATACAATATAA
91555826 TATTAGAAATATAC-ATATAA
1 TATTAGAAATATACAATATAA
* *
91555846 TAGTATAAAAAATATATAACTAATAA
1 TA-T-T-AGAAATATACAA-T-ATAA
91555872 TATTA-AAATATA
1 TATTAGAAATATA
91555884 TATAATAATA
Statistics
Matches: 50, Mismatches: 2, Indels: 11
0.79 0.03 0.17
Matches are distributed among these distances:
20 8 0.16
21 15 0.30
22 8 0.16
23 9 0.18
24 2 0.04
25 2 0.04
26 6 0.12
ACGTcount: A:0.58, C:0.04, G:0.04, T:0.34
Consensus pattern (21 bp):
TATTAGAAATATACAATATAA
Found at i:91555874 original size:12 final size:12
Alignment explanation
Indices: 91555833--91555953 Score: 78
Period size: 12 Copynumber: 10.1 Consensus size: 12
91555823 TAATATTAGA
*
91555833 AATATACAT-AT
1 AATATATATAAT
91555844 AATAGTATA-AA-
1 AATA-TATATAAT
91555855 AA-ATATATAACT
1 AATATATATAA-T
91555867 AATA-ATATTAA-
1 AATATATA-TAAT
91555878 AATATATATAAT
1 AATATATATAAT
91555890 AATATATATAA-
1 AATATATATAAT
*
91555901 AATATAATATTAAA
1 AATAT-ATA-TAAT
91555915 AACT-TATATACAT
1 AA-TATATATA-AT
* *
91555928 AACATATATGAAA
1 AATATATAT-AAT
91555941 AATATATATAAT
1 AATATATATAAT
91555953 A
1 A
91555954 TAATATTAAA
Statistics
Matches: 88, Mismatches: 6, Indels: 31
0.70 0.05 0.25
Matches are distributed among these distances:
9 4 0.05
10 3 0.03
11 18 0.20
12 31 0.35
13 27 0.31
14 4 0.05
15 1 0.01
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.35
Consensus pattern (12 bp):
AATATATATAAT
Found at i:91555898 original size:14 final size:14
Alignment explanation
Indices: 91555776--91555959 Score: 56
Period size: 14 Copynumber: 14.3 Consensus size: 14
91555766 ACACACACAC
91555776 ATATATATAT-ATA
1 ATATATATATAATA
91555789 TATATATATATAATA
1 -ATATATATATAATA
* *
91555804 GTAT-TAGA-AAT-
1 ATATATATATAATA
*
91555815 ATACA-ATATAATA
1 ATATATATATAATA
* * *
91555828 TTAGAAATATACAT-
1 ATATATATATA-ATA
91555842 ATA-ATAGTATAA-A
1 ATATATA-TATAATA
91555855 A-A-ATATATAACTA
1 ATATATATATAA-TA
91555868 ATA-ATAT-T-A-A
1 ATATATATATAATA
91555878 A-ATATATATAATA
1 ATATATATATAATA
*
91555891 ATATATATAAAAT-
1 ATATATATATAATA
91555904 ATA-ATAT-TAA-A
1 ATATATATATAATA
91555915 A-ACT-TATATACATA
1 ATA-TATATATA-ATA
*
91555929 ACATATATGA-AA-A
1 ATATATAT-ATAATA
91555942 ATATATATA-ATATA
1 ATATATATATA-ATA
91555956 ATAT
1 ATAT
91555960 TAAACATTTA
Statistics
Matches: 131, Mismatches: 12, Indels: 54
0.66 0.06 0.27
Matches are distributed among these distances:
9 1 0.01
10 7 0.05
11 16 0.12
12 20 0.15
13 28 0.21
14 48 0.37
15 10 0.08
16 1 0.01
ACGTcount: A:0.57, C:0.03, G:0.03, T:0.37
Consensus pattern (14 bp):
ATATATATATAATA
Found at i:91555947 original size:13 final size:12
Alignment explanation
Indices: 91555849--91555951 Score: 79
Period size: 12 Copynumber: 8.4 Consensus size: 12
91555839 CATATAATAG
91555849 TATAAAAA-ATA
1 TATAAAAATATA
*
91555860 TATAACTAATA-A
1 TATAA-AAATATA
*
91555872 TATTAAAATATA
1 TATAAAAATATA
*
91555884 TATAATAATATA
1 TATAAAAATATA
91555896 TAT-AAAATATAA
1 TATAAAAATAT-A
91555908 TATTAAAAACT-TA
1 TA-TAAAAA-TATA
* *
91555921 TATACATAACATA
1 TATA-AAAATATA
91555934 TATGAAAAATATA
1 TAT-AAAAATATA
91555947 TATAA
1 TATAA
91555952 TATAATATTA
Statistics
Matches: 72, Mismatches: 10, Indels: 19
0.71 0.10 0.19
Matches are distributed among these distances:
11 15 0.21
12 28 0.39
13 22 0.31
14 6 0.08
15 1 0.01
ACGTcount: A:0.60, C:0.04, G:0.01, T:0.35
Consensus pattern (12 bp):
TATAAAAATATA
Found at i:91556135 original size:17 final size:16
Alignment explanation
Indices: 91556107--91556140 Score: 59
Period size: 17 Copynumber: 2.1 Consensus size: 16
91556097 CTATATATAA
91556107 ATATATATATACATAC
1 ATATATATATACATAC
91556123 ATATATAATATACATAC
1 ATATAT-ATATACATAC
91556140 A
1 A
91556141 CTAATATTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.35
17 11 0.65
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.35
Consensus pattern (16 bp):
ATATATATATACATAC
Found at i:91556156 original size:3 final size:3
Alignment explanation
Indices: 91556142--91556304 Score: 77
Period size: 3 Copynumber: 53.7 Consensus size: 3
91556132 ATACATACAC
* * *
91556142 TAA TAT TAA TAA TAA TAA TAA -AA CTAGA -AA TAA TAA TCAT TAG TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA -TA-A TAA TAA TAA T-AA TAA TAA
* * ** * *
91556188 TAA TAA TACGT TAA AAA TAA TTAA T-A TGT TAA TAA AAA TAA TAG TAA
1 TAA TAA TA--A TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * *
91556235 TAA AAA TAA TAC TAA CAG TAA TAA TAA -AGA TAA TAA TAGA -AA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TA-A TAA TAA
* *
91556280 -AA TAA TAG TAA TAA TAT TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA
91556305 TGTAAAAAAA
Statistics
Matches: 118, Mismatches: 28, Indels: 28
0.68 0.16 0.16
Matches are distributed among these distances:
2 9 0.08
3 98 0.83
4 8 0.07
5 3 0.03
ACGTcount: A:0.60, C:0.03, G:0.06, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:91557705 original size:23 final size:23
Alignment explanation
Indices: 91557623--91557709 Score: 92
Period size: 21 Copynumber: 4.0 Consensus size: 23
91557613 CCTGATCAGT
*
91557623 ATACGACACATAAAGTGCCT-AA
1 ATACGACACACAAAGTGCCTGAA
* *
91557645 A-ACGACACACGAGGTGCCTG--
1 ATACGACACACAAAGTGCCTGAA
* *
91557665 ATACGACACACGAGGTGCCTGAA
1 ATACGACACACAAAGTGCCTGAA
*
91557688 ATACGACACATAAAGTGCCTGA
1 ATACGACACACAAAGTGCCTGA
91557710 TCGATAAAGC
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
20 1 0.02
21 34 0.62
22 1 0.02
23 19 0.35
ACGTcount: A:0.38, C:0.25, G:0.22, T:0.15
Consensus pattern (23 bp):
ATACGACACACAAAGTGCCTGAA
Found at i:91558106 original size:15 final size:15
Alignment explanation
Indices: 91558081--91558138 Score: 89
Period size: 15 Copynumber: 3.8 Consensus size: 15
91558071 TCATATATAT
91558081 TATATAATTCAATCAA
1 TATA-AATTCAATCAA
91558097 TATAAATTCAATCAA
1 TATAAATTCAATCAA
* *
91558112 AATAATTTCAATCAA
1 TATAAATTCAATCAA
91558127 TATAAATTCAAT
1 TATAAATTCAAT
91558139 AAATTCATCG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
15 34 0.89
16 4 0.11
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:91559421 original size:5 final size:5
Alignment explanation
Indices: 91559408--91559439 Score: 55
Period size: 5 Copynumber: 6.2 Consensus size: 5
91559398 TTCTTTAGTT
91559408 TATATA TATAA TATAA TATAA TATAA TATAA T
1 TATA-A TATAA TATAA TATAA TATAA TATAA T
91559440 TAAAACATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 22 0.85
6 4 0.15
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (5 bp):
TATAA
Found at i:91559475 original size:8 final size:8
Alignment explanation
Indices: 91559462--91559490 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
91559452 TATCTTTATT
91559462 ATATAATA
1 ATATAATA
91559470 ATATAATA
1 ATATAATA
91559478 ATATAATA
1 ATATAATA
91559486 ATATA
1 ATATA
91559491 CTAAACATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
ATATAATA
Found at i:91562433 original size:9 final size:9
Alignment explanation
Indices: 91562409--91562442 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
91562399 TTCACTTCGT
91562409 TCTCTCAAA
1 TCTCTCAAA
91562418 CTCTCTCAAA
1 -TCTCTCAAA
*
91562428 TCTCTCAAC
1 TCTCTCAAA
91562437 TCTCTC
1 TCTCTC
91562443 GTGTTAATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
9 14 0.61
10 9 0.39
ACGTcount: A:0.24, C:0.41, G:0.00, T:0.35
Consensus pattern (9 bp):
TCTCTCAAA
Found at i:91565115 original size:39 final size:39
Alignment explanation
Indices: 91565072--91565219 Score: 217
Period size: 39 Copynumber: 3.8 Consensus size: 39
91565062 ACTAGCTCGA
* * *
91565072 AGCCTGCAGGA-CTTTAGCCCGGACGTAATTCCAGCATAT
1 AGCCTGC-GGACCTTAAGTCCGGACATAATTCCAGCATAT
91565111 AGCCTGCGGACCTTAAGTCCGGACATAATTCCAGCATAT
1 AGCCTGCGGACCTTAAGTCCGGACATAATTCCAGCATAT
* *
91565150 AGTCTGCGGACCTTAAGTCCGGACATAATTCTAGCATAT
1 AGCCTGCGGACCTTAAGTCCGGACATAATTCCAGCATAT
* *
91565189 AGCTTGCGGACCTTAAGTCCGGATATAATTC
1 AGCCTGCGGACCTTAAGTCCGGACATAATTC
91565220 ATCACTGAGT
Statistics
Matches: 100, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
38 3 0.03
39 97 0.97
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.26
Consensus pattern (39 bp):
AGCCTGCGGACCTTAAGTCCGGACATAATTCCAGCATAT
Found at i:91570232 original size:23 final size:23
Alignment explanation
Indices: 91570206--91570249 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
91570196 AACCATAAAC
*
91570206 CCTAACCCTAATAAAATAAAAAT
1 CCTAACCCTAAAAAAATAAAAAT
91570229 CCTAACCCTAAAAAAATAAAA
1 CCTAACCCTAAAAAAATAAAA
91570250 GCCGTAACCC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.59, C:0.23, G:0.00, T:0.18
Consensus pattern (23 bp):
CCTAACCCTAAAAAAATAAAAAT
Found at i:91570257 original size:23 final size:23
Alignment explanation
Indices: 91570206--91570261 Score: 78
Period size: 23 Copynumber: 2.4 Consensus size: 23
91570196 AACCATAAAC
* *
91570206 CCTAACCCTAATAAAATAAAAAT
1 CCTAACCCTAAAAAAATAAAAAG
91570229 CCTAACCCTAAAAAAAT-AAAAG
1 CCTAACCCTAAAAAAATAAAAAG
91570251 CCGTAACCCTA
1 CC-TAACCCTA
91570262 GAGAGAGAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
22 6 0.20
23 24 0.80
ACGTcount: A:0.52, C:0.27, G:0.04, T:0.18
Consensus pattern (23 bp):
CCTAACCCTAAAAAAATAAAAAG
Done.