Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 292 of 318
Found at i:91839240 original size:20 final size:19
Alignment explanation
Indices: 91839217--91839256 Score: 71
Period size: 20 Copynumber: 2.1 Consensus size: 19
91839207 TTTTTTATTA
91839217 ATTATTTGTACATATTATAT
1 ATTATTTGTACATA-TATAT
91839237 ATTATTTGTACATATATAT
1 ATTATTTGTACATATATAT
91839256 A
1 A
91839257 CTTTCATATT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 6 0.30
20 14 0.70
ACGTcount: A:0.38, C:0.05, G:0.05, T:0.53
Consensus pattern (19 bp):
ATTATTTGTACATATATAT
Found at i:91843311 original size:15 final size:15
Alignment explanation
Indices: 91843282--91843324 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
91843272 TTTTTTACAT
91843282 TCATGCATTTGCATC
1 TCATGCATTTGCATC
91843297 TCATAGCATTT-CATC
1 TCAT-GCATTTGCATC
*
91843312 ACAT-CATTTGCAT
1 TCATGCATTTGCAT
91843325 TCAAAGTTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
13 5 0.20
14 3 0.12
15 11 0.44
16 6 0.24
ACGTcount: A:0.26, C:0.26, G:0.09, T:0.40
Consensus pattern (15 bp):
TCATGCATTTGCATC
Found at i:91851824 original size:210 final size:209
Alignment explanation
Indices: 91851295--91852090 Score: 1056
Period size: 210 Copynumber: 3.8 Consensus size: 209
91851285 TAAGCCTTAG
* * ** *
91851295 CATAGCA-ATCTCACCTTCAGATGTTTACGCTGAAGCATATTGAAGATGACAGATCTTATCTCTT
1 CATAGCAGATCTCACCTTCAGATGTTTACGCTAAAGCAGATCCAAGATGACAGATCTTATCTCTC
* *
91851359 TGTATTCGAG-GGGGAGTAGATC-AAGATATAGCTGATTTGGCTTTCACGTGTTTATGATGAAGC
66 TGTATTCG-GCGGGGAGCAGATCGAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGC
*
91851422 AAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGAACAAATCAAAGTTTGGCATTTCCACTT
130 AAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGAACAAATCAAAGTCTGGCATTTCCACTT
91851487 TGATGGAGGCAGACA
195 TGATGGAGGCAGACA
* *
91851502 CATAGCAGATCTCACCTTCAGATGTTTATGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTC
1 CATAGCAGATCTCACCTTCAGATGTTTACGCTAAAGCAGATCCAAGATGACAGATCTTATCTCTC
* *
91851567 TGTATTCGGCGGGGAGCAGATCGAAGAAATAGCTGATTTGGCTTTCACGTGCTTACGATGAAGCA
66 TGTATTCGGCGGGGAGCAGATCGAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCA
91851632 AATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGAACAAATCAAAGTCTGGCATTTCCACTTT
131 AATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGAACAAATCAAAGTCTGGCATTTCCACTTT
91851697 GATGGAAGGCAGACA
196 GATGG-AGGCAGACA
91851712 CATAGCAGATCTCACCTTCAGATGTTTACGCTAAAGCAGATCCAAGATGACAGATCTTATCTCTC
1 CATAGCAGATCTCACCTTCAGATGTTTACGCTAAAGCAGATCCAAGATGACAGATCTTATCTCTC
* * * *
91851777 TGTATTCGGCGGGGAGCAGATCGAAGATATAGCTAATTTGACTTTCACGTGTTTACTATAAAGCA
66 TGTATTCGGCGGGGAGCAGATCGAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCA
* * * *
91851842 AATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGAACAAATCGAAGTCT-GCATCTCTACTTC
131 AATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGAACAAATCAAAGTCTGGCATTTCCACTTT
* * *
91851906 AATAGAGAGCAGATA
196 GATGGAG-GCAGACA
* * * ** * *
91851921 CATAGCAGATCTGACCTTCAGATGATTA-GACTAAAACAAGATCCAAGATGATTTG-GCATA-CT
1 CATAGCAGATCTCACCTTCAGATGTTTACG-CTAAAGC-AGATCCAAGATGA-CAGATCTTATCT
* * * ** * * * * *
91851983 -TGTG-CTT--ACAAGGAGCAAATCAAAGACATAGCTGATTTAGTTTTCACGTGTTTACGATGAA
63 CTCTGTATTCGGCGGGGAGCAGATCGAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATGAA
* * * * *
91852044 ACAAATCTAAAATAATTTGGCATCTCTGTATTGTCAGAGAACAAATC
128 GCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGAACAAATC
91852091 GAAGAAGCAG
Statistics
Matches: 530, Mismatches: 51, Indels: 18
0.88 0.09 0.03
Matches are distributed among these distances:
205 84 0.16
207 10 0.02
208 77 0.15
209 161 0.30
210 197 0.37
211 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (209 bp):
CATAGCAGATCTCACCTTCAGATGTTTACGCTAAAGCAGATCCAAGATGACAGATCTTATCTCTC
TGTATTCGGCGGGGAGCAGATCGAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCA
AATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGAACAAATCAAAGTCTGGCATTTCCACTTT
GATGGAGGCAGACA
Found at i:91860907 original size:15 final size:15
Alignment explanation
Indices: 91860878--91860920 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
91860868 CTTTTTACAT
91860878 TCATGCATTTGCATC
1 TCATGCATTTGCATC
91860893 TCATAGCATTT-CATC
1 TCAT-GCATTTGCATC
*
91860908 ACAT-CATTTGCAT
1 TCATGCATTTGCAT
91860921 TCAAAGTTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
13 5 0.20
14 3 0.12
15 11 0.44
16 6 0.24
ACGTcount: A:0.26, C:0.26, G:0.09, T:0.40
Consensus pattern (15 bp):
TCATGCATTTGCATC
Found at i:91869268 original size:210 final size:210
Alignment explanation
Indices: 91868906--91869705 Score: 1060
Period size: 210 Copynumber: 3.8 Consensus size: 210
91868896 TAAGCCTTAG
* * * ** *
91868906 CATAGCAAATCTCACCTTCAGATGTTTACGCTGAAGCATATTGAAGATGACAGATCTTATCTCTT
1 CATAGCAGATCTCACCTTCAGATGTTTACGCTAAAGCAGATCCAAGATGACAGATCTTATCTCTC
* *
91868971 TGTATTCGAG-GGGGAGTAGATCAAAGATATAGCTGATTTGGCTTTCACGTGTTTATGATGAAGC
66 TGTATTCG-GCGGGGAGCAGATCAAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGC
*
91869035 AAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGAACAAATCAAAGTTTGGCATTTCCACTT
130 AAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGAACAAATCAAAGTCTGGCATTTCCACTT
91869100 TGATGGGAGGCAGACA
195 TGATGGGAGGCAGACA
* *
91869116 CATAGCAGATCTCACCTTCAGATGTTTATGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTC
1 CATAGCAGATCTCACCTTCAGATGTTTACGCTAAAGCAGATCCAAGATGACAGATCTTATCTCTC
* * *
91869181 TGTATTCGGCGGGGAGCAGATCGAAGAAATAGCTGATTTGGCTTTCACGTGCTTACGATGAAGCA
66 TGTATTCGGCGGGGAGCAGATCAAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCA
91869246 AATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGAACAAATCAAAGTCTGGCATTTCCACTTT
131 AATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGAACAAATCAAAGTCTGGCATTTCCACTTT
*
91869311 GATGGAAGGCAGACA
196 GATGGGAGGCAGACA
91869326 CATAGCAGATCTCACCTTCAGATGTTTACGCTAAAGCAGATCCAAGATGACAGATCTTATCTCTC
1 CATAGCAGATCTCACCTTCAGATGTTTACGCTAAAGCAGATCCAAGATGACAGATCTTATCTCTC
* * * * *
91869391 TGTATTCGGCGGGGAGCAGATCGAAGATATAGCTAATTTGACTTTCACGTGTTTACTATAAAGCA
66 TGTATTCGGCGGGGAGCAGATCAAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCA
* * * *
91869456 AATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCTACTTC
131 AATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGAACAAATCAAAGTCTGGCATTTCCACTTT
* * *
91869521 AAT-AGAGAGCAGATA
196 GATGGGAG-GCAGACA
* * * ** * *
91869536 CATAGCAGATCTGACCTTCAGATGATTA-GACTAAAACAAGATCCAAGATGATTTG-GCATA-CT
1 CATAGCAGATCTCACCTTCAGATGTTTACG-CTAAAGC-AGATCCAAGATGA-CAGATCTTATCT
* * * ** * * * *
91869598 -TGTG-CTT--ACAAGGAGCAAATCAAAGACATAGCTGATTTAGTTTTCACGTGTTTACGATGAA
63 CTCTGTATTCGGCGGGGAGCAGATCAAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATGAA
* * * * *
91869659 ACAAATCTAAAATAATTTGGCATCTCTGTATTGTCAGAGAACAAATC
128 GCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGAACAAATC
91869706 GAAGAAGCAG
Statistics
Matches: 530, Mismatches: 55, Indels: 14
0.88 0.09 0.02
Matches are distributed among these distances:
206 84 0.16
208 2 0.00
209 7 0.01
210 420 0.79
211 16 0.03
212 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (210 bp):
CATAGCAGATCTCACCTTCAGATGTTTACGCTAAAGCAGATCCAAGATGACAGATCTTATCTCTC
TGTATTCGGCGGGGAGCAGATCAAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCA
AATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGAACAAATCAAAGTCTGGCATTTCCACTTT
GATGGGAGGCAGACA
Found at i:91871715 original size:20 final size:20
Alignment explanation
Indices: 91871698--91871737 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
91871688 TTTTTTATTA
91871698 ATTATTTGTACATATTATAT
1 ATTATTTGTACATATTATAT
91871718 ATTATTTGTACATA-TATAT
1 ATTATTTGTACATATTATAT
91871737 A
1 A
91871738 CTTTCATATT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 6 0.30
20 14 0.70
ACGTcount: A:0.38, C:0.05, G:0.05, T:0.53
Consensus pattern (20 bp):
ATTATTTGTACATATTATAT
Found at i:91877547 original size:28 final size:28
Alignment explanation
Indices: 91877507--91877562 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
91877497 TGCCACACGT
91877507 AGGAGCAATTCTCTCTCACTATGCTTGA
1 AGGAGCAATTCTCTCTCACTATGCTTGA
91877535 AGGAGCAATTCTCTCTCACTATGCTTGA
1 AGGAGCAATTCTCTCTCACTATGCTTGA
91877563 CAGACACAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (28 bp):
AGGAGCAATTCTCTCTCACTATGCTTGA
Found at i:91905524 original size:3 final size:3
Alignment explanation
Indices: 91905516--91905581 Score: 132
Period size: 3 Copynumber: 22.0 Consensus size: 3
91905506 TCTAGTTGTA
91905516 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
91905564 TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC
91905582 ATCATTTTTC
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 63 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:91908734 original size:30 final size:29
Alignment explanation
Indices: 91908693--91908753 Score: 104
Period size: 30 Copynumber: 2.1 Consensus size: 29
91908683 AAACGGAAGT
*
91908693 TTTGGCTCTAAGTGTGCGATTTAAACTAGC
1 TTTGGCACTAAGTGTGCGATTT-AACTAGC
91908723 TTTGGCACTAAGTGTGCGATTTAACTAGC
1 TTTGGCACTAAGTGTGCGATTTAACTAGC
91908752 TT
1 TT
91908754 CGGCTACTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 9 0.30
30 21 0.70
ACGTcount: A:0.23, C:0.16, G:0.23, T:0.38
Consensus pattern (29 bp):
TTTGGCACTAAGTGTGCGATTTAACTAGC
Found at i:91916884 original size:34 final size:34
Alignment explanation
Indices: 91916841--91916908 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
91916831 ATATGCATGA
91916841 AAACCTTAGAAAATAGTTAGATTTACTAGAATAC
1 AAACCTTAGAAAATAGTTAGATTTACTAGAATAC
91916875 AAACCTTAGAAAATAGTTAGATTTACTAGAATAC
1 AAACCTTAGAAAATAGTTAGATTTACTAGAATAC
91916909 CCCTATGTAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.47, C:0.12, G:0.12, T:0.29
Consensus pattern (34 bp):
AAACCTTAGAAAATAGTTAGATTTACTAGAATAC
Found at i:91916937 original size:28 final size:28
Alignment explanation
Indices: 91916905--91916969 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
91916895 ATTTACTAGA
*
91916905 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
*
91916933 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
91916961 ATACCCCTA
1 ATACCCCTA
91916970 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.34, C:0.28, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:91917133 original size:27 final size:27
Alignment explanation
Indices: 91917075--91917164 Score: 119
Period size: 28 Copynumber: 3.2 Consensus size: 27
91917065 AGGAAGCGTC
91917075 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
91917103 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
91917130 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
91917159 CTGGTG
1 CTGGTG
91917165 ACTCTGTCAC
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 23 0.42
28 25 0.45
29 7 0.13
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:91917183 original size:55 final size:56
Alignment explanation
Indices: 91917075--91917189 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
91917065 AGGAAGCGTC
* *
91917075 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
91917130 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
91917186 CTGG
1 CTGG
91917190 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.58
56 21 0.40
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:91917650 original size:19 final size:19
Alignment explanation
Indices: 91917626--91917664 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
91917616 TTTTAATTAT
* *
91917626 TTTTATGGTTTTGTTTTAC
1 TTTTATGATTTTATTTTAC
*
91917645 TTTTATTATTTTATTTTAC
1 TTTTATGATTTTATTTTAC
91917664 T
1 T
91917665 ATGATGAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.08, T:0.72
Consensus pattern (19 bp):
TTTTATGATTTTATTTTAC
Found at i:91927679 original size:30 final size:29
Alignment explanation
Indices: 91927638--91927698 Score: 104
Period size: 30 Copynumber: 2.1 Consensus size: 29
91927628 AAACGGAAGT
*
91927638 TTTGGCACTAAGTGTGCGATTTAAACTAGC
1 TTTGACACTAAGTGTGCGATTT-AACTAGC
91927668 TTTGACACTAAGTGTGCGATTTAACTAGC
1 TTTGACACTAAGTGTGCGATTTAACTAGC
91927697 TT
1 TT
91927699 CGGCTACTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 9 0.30
30 21 0.70
ACGTcount: A:0.26, C:0.16, G:0.21, T:0.36
Consensus pattern (29 bp):
TTTGACACTAAGTGTGCGATTTAACTAGC
Found at i:91929348 original size:25 final size:25
Alignment explanation
Indices: 91929314--91929363 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
91929304 AATATTTTTG
91929314 TTAACTTTGTACAGGGGTAGCACAT
1 TTAACTTTGTACAGGGGTAGCACAT
91929339 TTAACTTTGTACAGGGGTAGCACAT
1 TTAACTTTGTACAGGGGTAGCACAT
91929364 ACTTTTATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.32
Consensus pattern (25 bp):
TTAACTTTGTACAGGGGTAGCACAT
Found at i:91936204 original size:22 final size:22
Alignment explanation
Indices: 91936178--91936230 Score: 106
Period size: 22 Copynumber: 2.4 Consensus size: 22
91936168 AATATGGAAA
91936178 TAAATGTATGCATTTATTCTTT
1 TAAATGTATGCATTTATTCTTT
91936200 TAAATGTATGCATTTATTCTTT
1 TAAATGTATGCATTTATTCTTT
91936222 TAAATGTAT
1 TAAATGTAT
91936231 ATAGTTGAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.30, C:0.08, G:0.09, T:0.53
Consensus pattern (22 bp):
TAAATGTATGCATTTATTCTTT
Found at i:91939091 original size:29 final size:30
Alignment explanation
Indices: 91939059--91939120 Score: 101
Period size: 29 Copynumber: 2.1 Consensus size: 30
91939049 ACTTAACAAG
91939059 CAAATG-CTTCTAAAATAATAA-AAAATTAA
1 CAAATGCCTT-TAAAATAATAAGAAAATTAA
91939088 CAAATGCCTTTAAAATAATAAGAAAATTAA
1 CAAATGCCTTTAAAATAATAAGAAAATTAA
91939118 CAA
1 CAA
91939121 TAAAATAAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
29 17 0.55
30 14 0.45
ACGTcount: A:0.58, C:0.11, G:0.05, T:0.26
Consensus pattern (30 bp):
CAAATGCCTTTAAAATAATAAGAAAATTAA
Found at i:91939513 original size:21 final size:21
Alignment explanation
Indices: 91939487--91939530 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
91939477 TTCGTTGGTG
91939487 TTGTTTACTACTGTTTTGCTA
1 TTGTTTACTACTGTTTTGCTA
* *
91939508 TTGTTTATTATTGTTTTGCTA
1 TTGTTTACTACTGTTTTGCTA
91939529 TT
1 TT
91939531 ATATTGCTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.14, C:0.09, G:0.14, T:0.64
Consensus pattern (21 bp):
TTGTTTACTACTGTTTTGCTA
Found at i:91941932 original size:16 final size:15
Alignment explanation
Indices: 91941909--91941950 Score: 59
Period size: 15 Copynumber: 2.7 Consensus size: 15
91941899 TAGTTAAAAC
91941909 TATTTTTTTATA-TAT
1 TATTTTTTTA-AGTAT
91941924 TATTTTTTTAAGTAT
1 TATTTTTTTAAGTAT
91941939 TATTTATTTTAA
1 TATTT-TTTTAA
91941951 AAATTGTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
14 1 0.04
15 18 0.72
16 6 0.24
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (15 bp):
TATTTTTTTAAGTAT
Found at i:91942135 original size:18 final size:18
Alignment explanation
Indices: 91942100--91942133 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
91942090 TGTTTTCTAT
*
91942100 TGGTTCATTATTTATTTA
1 TGGTTCATTATTCATTTA
91942118 TGGTT-ATTATTCATTT
1 TGGTTCATTATTCATTT
91942134 TAAACATATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.21, C:0.06, G:0.12, T:0.62
Consensus pattern (18 bp):
TGGTTCATTATTCATTTA
Found at i:91942412 original size:2 final size:2
Alignment explanation
Indices: 91942405--91942439 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
91942395 CTTTTAAATT
91942405 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
91942440 GTGTGTGTGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:91943003 original size:33 final size:32
Alignment explanation
Indices: 91942966--91943048 Score: 80
Period size: 33 Copynumber: 2.6 Consensus size: 32
91942956 CAAAACTTGT
*
91942966 TATATTTTTGTTTCATATT-GTTTGATATTTTCA
1 TATATTCTTGTTTCATATTAGTTTG-T-TTTTCA
* *
91942999 TATATTCTTGAGTTCATATTATTTTGTTTTTCA
1 TATATTCTTG-TTTCATATTAGTTTGTTTTTCA
* *
91943032 TAT-GTGTTGTTTCATAT
1 TATATTCTTGTTTCATAT
91943049 GTATATTTGT
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
31 7 0.17
32 4 0.10
33 18 0.43
34 9 0.21
35 4 0.10
ACGTcount: A:0.20, C:0.07, G:0.11, T:0.61
Consensus pattern (32 bp):
TATATTCTTGTTTCATATTAGTTTGTTTTTCA
Found at i:91943583 original size:131 final size:130
Alignment explanation
Indices: 91943349--91943606 Score: 329
Period size: 131 Copynumber: 2.0 Consensus size: 130
91943339 TGATTACTCA
* **
91943349 TTTAAAAATTCTTTAAAACGAAGGCAATACTCGATATTTGGCAATTTGAAAATCATACCCTATCG
1 TTTAAAAATTCTTTAAAACGAAGGCAATACTCGACATTTGGCAATCGGAAAATCATACCCTATCG
* * *
91943414 TGCTGGGTTGCGATTTCCCGTTTGTTCAAAACAATCGAATATTCCTTT-GGAATTTCGCTCATGT
66 TGCTGGGTTGCAATCTCCCGTTTGTTCAAAACAATCGAATATTCCTTTAGG-ATTTCACTCATGT
91943478 C
130 C
* ** * ** * *
91943479 TTTAAAAATTCTTTAAAACGAAGGTAATGTTCGACGTTTGGCAATCCGGGGAATCGTGCCCTATC
1 TTTAAAAATTCTTTAAAACGAAGGCAATACTCGACATTTGGCAAT-CGGAAAATCATACCCTATC
* * * *
91943544 TTGCTGGGTTGCAATCTCCTGTTTGTTCCAAATAATCGAATATTCCTTTAGGATTTCACTCAT
65 GTGCTGGGTTGCAATCTCCCGTTTGTTCAAAACAATCGAATATTCCTTTAGGATTTCACTCAT
91943607 TCTAAAATAA
Statistics
Matches: 108, Mismatches: 18, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
130 40 0.37
131 66 0.61
132 2 0.02
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.36
Consensus pattern (130 bp):
TTTAAAAATTCTTTAAAACGAAGGCAATACTCGACATTTGGCAATCGGAAAATCATACCCTATCG
TGCTGGGTTGCAATCTCCCGTTTGTTCAAAACAATCGAATATTCCTTTAGGATTTCACTCATGTC
Found at i:91949250 original size:2 final size:2
Alignment explanation
Indices: 91949210--91949241 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
91949200 ATCTCTAAGA
91949210 AT AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
91949242 CACATATATT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:91965482 original size:27 final size:27
Alignment explanation
Indices: 91965434--91965592 Score: 202
Period size: 27 Copynumber: 5.9 Consensus size: 27
91965424 GCGAGGCTAC
* *
91965434 CAGATATTGTGAC-GATGTCACCAGATA
1 CAGATATTGTGGCAGA-GCCACCAGATA
91965461 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
91965487 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
91965514 CAGATAATTGTGGCATAGCCACCAGA-A
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
91965541 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
91965568 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
91965593 GACGCTTCCT
Statistics
Matches: 119, Mismatches: 5, Indels: 16
0.85 0.04 0.11
Matches are distributed among these distances:
26 10 0.08
27 103 0.87
28 6 0.05
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:91965524 original size:54 final size:54
Alignment explanation
Indices: 91965452--91965592 Score: 257
Period size: 54 Copynumber: 2.6 Consensus size: 54
91965442 GTGACGATGT
*
91965452 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
91965506 CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
91965560 CACCAGATCAGATAATTGTGGCATAGCCACCAG
1 CACCAGATCAGATAATTGTGGCATAGCCACCAG
91965593 GACGCTTCCT
Statistics
Matches: 85, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
53 5 0.06
54 80 0.94
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
Found at i:91965730 original size:26 final size:27
Alignment explanation
Indices: 91965694--91965771 Score: 86
Period size: 26 Copynumber: 2.9 Consensus size: 27
91965684 GTCAAAATTA
*
91965694 ACCTTAGGGGTATAACGGTAATTTTAC
1 ACCTTAGGGGTATAACAGTAATTTTAC
*
91965721 ACCTT-GGGGTATAACAGTAATTTTCC
1 ACCTTAGGGGTATAACAGTAATTTTAC
* * * *
91965747 ATACATAGGGGTATTATAGTAATTT
1 A-CCTTAGGGGTATAACAGTAATTT
91965772 AGCTACTTTT
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
26 20 0.47
27 7 0.16
28 16 0.37
ACGTcount: A:0.31, C:0.13, G:0.21, T:0.36
Consensus pattern (27 bp):
ACCTTAGGGGTATAACAGTAATTTTAC
Found at i:91967242 original size:26 final size:26
Alignment explanation
Indices: 91967211--91967318 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
91967201 TGAAATGCCC
*
91967211 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
91967237 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
91967263 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
91967289 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
91967315 ATCA
1 ATCA
91967319 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:91976273 original size:57 final size:57
Alignment explanation
Indices: 91976200--91976318 Score: 159
Period size: 57 Copynumber: 2.1 Consensus size: 57
91976190 TTCATTTTTT
* * *
91976200 CATTTTATTTTTATTTTGGAGAAAATCACATTCATTTCCAAATAATT-CTATTTCTC
1 CATTTTATTTTCATTTTGGAGAAAACCACAATCATTTCCAAATAATTCCTATTTCTC
* * **
91976256 CATTTTCATTTTCATTTTGGAGAAAACCATAATCATTTTCAAATGTTTCCTATTTCTC
1 CATTTT-ATTTTCATTTTGGAGAAAACCACAATCATTTCCAAATAATTCCTATTTCTC
91976314 CATTT
1 CATTT
91976319 CACCATTTCT
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
56 6 0.11
57 34 0.63
58 14 0.26
ACGTcount: A:0.29, C:0.18, G:0.06, T:0.48
Consensus pattern (57 bp):
CATTTTATTTTCATTTTGGAGAAAACCACAATCATTTCCAAATAATTCCTATTTCTC
Found at i:91978404 original size:13 final size:13
Alignment explanation
Indices: 91978388--91978413 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
91978378 TTATTAAGCT
91978388 TGGTTGTTAAATA
1 TGGTTGTTAAATA
91978401 TGGTTGTTAAATA
1 TGGTTGTTAAATA
91978414 GGACTATTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.23, T:0.46
Consensus pattern (13 bp):
TGGTTGTTAAATA
Found at i:91981610 original size:21 final size:20
Alignment explanation
Indices: 91981584--91981642 Score: 57
Period size: 21 Copynumber: 2.9 Consensus size: 20
91981574 ATATAAATTT
91981584 TTAAATATTTTAAAAATAATA
1 TTAAATATTTTAAAAATAA-A
** *
91981605 TTAAATATAATAATCAATAAA
1 TTAAATATTTTAA-AAATAAA
*
91981626 TTAAAT-TTTAAAAAATA
1 TTAAATATTTTAAAAATA
91981643 GTTAATAATA
Statistics
Matches: 30, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
19 4 0.13
20 3 0.10
21 18 0.60
22 5 0.17
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (20 bp):
TTAAATATTTTAAAAATAAA
Found at i:91983059 original size:2 final size:2
Alignment explanation
Indices: 91983052--91983086 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
91983042 ATTTAACTTT
91983052 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
91983087 TAAAAACTAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:91983558 original size:17 final size:17
Alignment explanation
Indices: 91983513--91983564 Score: 54
Period size: 17 Copynumber: 3.0 Consensus size: 17
91983503 TATAAATGAA
91983513 ATATAAAATATAGTTAAATT
1 ATATAAAA-ATA-TT-AATT
91983533 AT-T-AAAATATTAATT
1 ATATAAAAATATTAATT
*
91983548 ATATAAAAATATAAATT
1 ATATAAAAATATTAATT
91983565 TTTCACTGAC
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
15 6 0.21
16 3 0.10
17 14 0.48
18 3 0.10
19 1 0.03
20 2 0.07
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (17 bp):
ATATAAAAATATTAATT
Found at i:91989928 original size:2 final size:2
Alignment explanation
Indices: 91989921--91989955 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
91989911 GTGATGGACC
91989921 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
91989956 AGTGATGCTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:91990268 original size:14 final size:14
Alignment explanation
Indices: 91990249--91990286 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
91990239 ATTGTTAATA
91990249 TTGTTAAATTTTTC
1 TTGTTAAATTTTTC
*
91990263 TTGTTAATTTTTTC
1 TTGTTAAATTTTTC
*
91990277 TTGTCAAATT
1 TTGTTAAATT
91990287 CAGTTTTATT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.21, C:0.08, G:0.08, T:0.63
Consensus pattern (14 bp):
TTGTTAAATTTTTC
Found at i:91997502 original size:43 final size:43
Alignment explanation
Indices: 91997441--91997533 Score: 141
Period size: 43 Copynumber: 2.2 Consensus size: 43
91997431 AAAAAAATGT
* *
91997441 CGCTAAAGGTCATGACCTTTAGCGATGCTTTTCCCACAAACGC
1 CGCTAAAAGTCATGACCTTTAGCGACGCTTTTCCCACAAACGC
* * *
91997484 CGCTAAAAGTCATGACCTTTAGCGGCGCTTTTCCTACAAATGC
1 CGCTAAAAGTCATGACCTTTAGCGACGCTTTTCCCACAAACGC
91997527 CGCTAAA
1 CGCTAAA
91997534 GATCATAAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.26
Consensus pattern (43 bp):
CGCTAAAAGTCATGACCTTTAGCGACGCTTTTCCCACAAACGC
Found at i:91997569 original size:10 final size:10
Alignment explanation
Indices: 91997554--91997617 Score: 55
Period size: 10 Copynumber: 6.5 Consensus size: 10
91997544 TTTAAAATAT
91997554 ATATTATAAA
1 ATATTATAAA
91997564 ATATTATAAA
1 ATATTATAAA
91997574 AT-TTATGAAA
1 ATATTAT-AAA
91997584 A-A-TATAAA
1 ATATTATAAA
*
91997592 AAATTA-AAA
1 ATATTATAAA
*
91997601 TTCATTATCAAA
1 AT-ATTAT-AAA
91997613 ATATT
1 ATATT
91997618 GAGAAGAAGA
Statistics
Matches: 44, Mismatches: 3, Indels: 13
0.73 0.05 0.22
Matches are distributed among these distances:
8 4 0.09
9 11 0.25
10 22 0.50
11 3 0.07
12 4 0.09
ACGTcount: A:0.58, C:0.03, G:0.02, T:0.38
Consensus pattern (10 bp):
ATATTATAAA
Found at i:91999509 original size:2 final size:2
Alignment explanation
Indices: 91999502--91999528 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
91999492 GAATATAATC
91999502 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
91999529 GCTTTTTCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:92002973 original size:46 final size:46
Alignment explanation
Indices: 92002913--92003137 Score: 335
Period size: 46 Copynumber: 4.9 Consensus size: 46
92002903 TTTGACATGA
* * * * * *
92002913 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
* * *
92002959 TGCCATGGTATCTTTCAACCATGGTCTTGCTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
92003005 TGCCATAGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
92003051 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
92003097 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
92003138 TAGAGAGCAC
Statistics
Matches: 166, Mismatches: 12, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
45 4 0.02
46 162 0.98
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:92006836 original size:16 final size:17
Alignment explanation
Indices: 92006815--92006849 Score: 63
Period size: 16 Copynumber: 2.1 Consensus size: 17
92006805 ACTATTTAAT
92006815 ATATAAATT-AAAAACA
1 ATATAAATTAAAAAACA
92006831 ATATAAATTAAAAAACA
1 ATATAAATTAAAAAACA
92006848 AT
1 AT
92006850 CACTTATATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 9 0.50
17 9 0.50
ACGTcount: A:0.69, C:0.06, G:0.00, T:0.26
Consensus pattern (17 bp):
ATATAAATTAAAAAACA
Found at i:92006987 original size:26 final size:26
Alignment explanation
Indices: 92006958--92007007 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
92006948 AAGAATTAGA
92006958 TAAAATTTGAAATCTTGAAAATTTTT
1 TAAAATTTGAAATCTTGAAAATTTTT
* * *
92006984 TAAAATTTTAATTCTTTAAAATTT
1 TAAAATTTGAAATCTTGAAAATTT
92007008 GAAATTATTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.42, C:0.04, G:0.04, T:0.50
Consensus pattern (26 bp):
TAAAATTTGAAATCTTGAAAATTTTT
Found at i:92006996 original size:16 final size:16
Alignment explanation
Indices: 92006977--92007007 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
92006967 AAATCTTGAA
*
92006977 AATTTTTTAAAATTTT
1 AATTCTTTAAAATTTT
92006993 AATTCTTTAAAATTT
1 AATTCTTTAAAATTT
92007008 GAAATTATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (16 bp):
AATTCTTTAAAATTTT
Found at i:92007142 original size:8 final size:7
Alignment explanation
Indices: 92007121--92007253 Score: 56
Period size: 7 Copynumber: 18.3 Consensus size: 7
92007111 CACACTAATT
92007121 ACCCTAA
1 ACCCTAA
92007128 ACCCTAA
1 ACCCTAA
92007135 ACCCCT-A
1 A-CCCTAA
** *
92007142 ACATTTA
1 ACCCTAA
* *
92007149 ACCTTTA
1 ACCCTAA
*
92007156 ACCCTTA
1 ACCCTAA
92007163 ACCCTAAA
1 ACCCT-AA
92007171 ACCCCT-A
1 A-CCCTAA
92007178 ACACCTAA
1 AC-CCTAA
*
92007186 ACCCCATA
1 ACCCTA-A
92007194 ACCCGTAA
1 ACCC-TAA
92007202 ACCCCT-A
1 A-CCCTAA
*
92007209 ACTCTTAA
1 AC-CCTAA
*
92007217 CCCCTAA
1 ACCCTAA
92007224 ACCCTAA
1 ACCCTAA
* *
92007231 GCCATAA
1 ACCCTAA
* *
92007238 AACATAA
1 ACCCTAA
92007245 ACCCTAA
1 ACCCTAA
92007252 AC
1 AC
92007254 TTCTACCCAT
Statistics
Matches: 98, Mismatches: 17, Indels: 22
0.72 0.12 0.16
Matches are distributed among these distances:
6 4 0.04
7 67 0.68
8 19 0.19
9 8 0.08
ACGTcount: A:0.40, C:0.40, G:0.02, T:0.19
Consensus pattern (7 bp):
ACCCTAA
Found at i:92007184 original size:16 final size:14
Alignment explanation
Indices: 92007155--92007230 Score: 80
Period size: 15 Copynumber: 5.1 Consensus size: 14
92007145 TTTAACCTTT
*
92007155 AACCCTTAACCCTAA
1 AACCCCTAACCCT-A
92007170 AACCCCTAACACCTA
1 AACCCCTAAC-CCTA
92007185 AACCCCATAACCCGTA
1 AACCCC-TAACCC-TA
* *
92007201 AACCCCTAACTCTT
1 AACCCCTAACCCTA
92007215 AACCCCTAAACCCTA
1 AACCCCT-AACCCTA
92007230 A
1 A
92007231 GCCATAAAAC
Statistics
Matches: 52, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
14 8 0.15
15 29 0.56
16 15 0.29
ACGTcount: A:0.38, C:0.43, G:0.01, T:0.17
Consensus pattern (14 bp):
AACCCCTAACCCTA
Found at i:92007579 original size:7 final size:7
Alignment explanation
Indices: 92007567--92007614 Score: 51
Period size: 7 Copynumber: 6.7 Consensus size: 7
92007557 CCCATGGCCA
92007567 TTAAACC
1 TTAAACC
92007574 TTAAACC
1 TTAAACC
*
92007581 ATAAAACC
1 -TTAAACC
*
92007589 CTAAACC
1 TTAAACC
* *
92007596 ATAGACC
1 TTAAACC
92007603 TTAAACC
1 TTAAACC
92007610 TTAAA
1 TTAAA
92007615 TACTAAACTC
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
7 27 0.82
8 6 0.18
ACGTcount: A:0.48, C:0.27, G:0.02, T:0.23
Consensus pattern (7 bp):
TTAAACC
Found at i:92007587 original size:15 final size:15
Alignment explanation
Indices: 92007564--92007614 Score: 59
Period size: 15 Copynumber: 3.5 Consensus size: 15
92007554 ATACCCATGG
*
92007564 CCATTAAACCTTAAA
1 CCATAAAACCTTAAA
*
92007579 CCATAAAACCCTAAA
1 CCATAAAACCTTAAA
*
92007594 CCAT-AGACCTTAAA
1 CCATAAAACCTTAAA
*
92007608 CCTTAAA
1 CCATAAA
92007615 TACTAAACTC
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
14 11 0.38
15 18 0.62
ACGTcount: A:0.47, C:0.29, G:0.02, T:0.22
Consensus pattern (15 bp):
CCATAAAACCTTAAA
Found at i:92007888 original size:42 final size:41
Alignment explanation
Indices: 92007841--92008053 Score: 164
Period size: 41 Copynumber: 5.2 Consensus size: 41
92007831 GTTATATGAC
* * *
92007841 TTTTAGTGGTGTTTTGACCACAAATGCCGCTATTGCTCTGGT
1 TTTTAGCGGCGTTTTGACCA-AAACGCCGCTATTGCTCTGGT
** ** * * *
92007883 TTTTAGCGATGTTTTTG-GTAAAACACCGCTATTGTTCTAGT
1 TTTTAGCGGCG-TTTTGACCAAAACGCCGCTATTGCTCTGGT
* *
92007924 TTTTAGCGGCGTTTT-ACCAAAAGCGCCGCTAATGCTCTGTT
1 TTTTAGCGGCGTTTTGACCAAAA-CGCCGCTATTGCTCTGGT
* ** * *
92007965 TTTTAGCGGCGTTTT-ACCGAAAGCGCCATTAATGCTCTGTT
1 TTTTAGCGGCGTTTTGACC-AAAACGCCGCTATTGCTCTGGT
* * **
92008006 TTTTAGCGGCGTTTT-ACCGAAAACGCCACTAATGCTCTATT
1 TTTTAGCGGCGTTTTGACC-AAAACGCCGCTATTGCTCTGGT
92008047 TTTTAGC
1 TTTTAGC
92008054 CACCGTTATT
Statistics
Matches: 144, Mismatches: 23, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
40 8 0.06
41 118 0.82
42 13 0.09
43 5 0.03
ACGTcount: A:0.20, C:0.21, G:0.21, T:0.38
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTGACCAAAACGCCGCTATTGCTCTGGT
Found at i:92007953 original size:41 final size:41
Alignment explanation
Indices: 92007923--92008053 Score: 210
Period size: 41 Copynumber: 3.2 Consensus size: 41
92007913 ATTGTTCTAG
*
92007923 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGT
1 TTTTTAGCGGCGTTTTACCAAAAGCGCCACTAATGCTCTGT
* *
92007964 TTTTTAGCGGCGTTTTACCGAAAGCGCCATTAATGCTCTGT
1 TTTTTAGCGGCGTTTTACCAAAAGCGCCACTAATGCTCTGT
*
92008005 TTTTTAGCGGCGTTTTACCGAAAA-CGCCACTAATGCTCTAT
1 TTTTTAGCGGCGTTTTACC-AAAAGCGCCACTAATGCTCTGT
92008046 TTTTTAGC
1 TTTTTAGC
92008054 CACCGTTATT
Statistics
Matches: 83, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
41 80 0.96
42 3 0.04
ACGTcount: A:0.21, C:0.23, G:0.20, T:0.37
Consensus pattern (41 bp):
TTTTTAGCGGCGTTTTACCAAAAGCGCCACTAATGCTCTGT
Found at i:92007979 original size:82 final size:82
Alignment explanation
Indices: 92007866--92008053 Score: 202
Period size: 82 Copynumber: 2.3 Consensus size: 82
92007856 GACCACAAAT
* * * ** * * *
92007866 GCCGCTATTGCTCTGGTTTTTAGCGATGTTTT-TGGTAAAACACCGCTATTGTTCTAG-TTTTTA
1 GCCGCTAATGCTCTGTTTTTTAGCGACGTTTTACCG-AAAACACCACTAATGCTCT-GTTTTTTA
92007929 GCGGCGTTTTACC-AAAAGC
64 GCGGCGTTTTACCGAAAA-C
* * * *
92007948 GCCGCTAATGCTCTGTTTTTTAGCGGCGTTTTACCGAAAGCGCCATTAATGCTCTGTTTTTTAGC
1 GCCGCTAATGCTCTGTTTTTTAGCGACGTTTTACCGAAAACACCACTAATGCTCTGTTTTTTAGC
92008013 GGCGTTTTACCGAAAAC
66 GGCGTTTTACCGAAAAC
* *
92008030 GCCACTAATGCTCTATTTTTTAGC
1 GCCGCTAATGCTCTGTTTTTTAGC
92008054 CACCGTTATT
Statistics
Matches: 89, Mismatches: 14, Indels: 6
0.82 0.13 0.06
Matches are distributed among these distances:
81 1 0.01
82 83 0.93
83 5 0.06
ACGTcount: A:0.20, C:0.22, G:0.21, T:0.38
Consensus pattern (82 bp):
GCCGCTAATGCTCTGTTTTTTAGCGACGTTTTACCGAAAACACCACTAATGCTCTGTTTTTTAGC
GGCGTTTTACCGAAAAC
Found at i:92009708 original size:177 final size:178
Alignment explanation
Indices: 92009406--92009764 Score: 546
Period size: 177 Copynumber: 2.0 Consensus size: 178
92009396 AATTTAAATT
* * *
92009406 CTCTTTGCATGCAAATGAATTATGGTTTTCTTACATTTGAAAGCCTTCTTTTCTATCTTGATATG
1 CTCTCTGCATGCAAATGAATTATGATTTTCTTACACTTGAAAGCCTTCTTTTCTATCTTGATATG
* * * * **
92009471 ATTATTATGTTTAGTTAATCGATAAGGAGGAGGCTCAAGTGATAAGGAAAAGCTAAGTAGGTGTA
66 ATTATTATGTTTAGCTAACCGAGAAGGAAGAGGCTCAAGTGATAACAAAAAGCTAAGTAGGTGTA
** *
92009536 ATCGGTACCAAC-TTTCAAGTATTTTGCTGGTGAGTTTCTAAACTCAAA
131 ATCAATACC-ACTTTTCAAGTATTTTGCTGGTGAGTTTCTAAAATCAAA
92009584 CTCTCTGCATGCAAATGAATTATGATTTTCTTACACTTG-AAGCCCATT-TTTT-TATCTTGATA
1 CTCTCTGCATGCAAATGAATTATGATTTTCTTACACTTGAAAG-CC-TTCTTTTCTATCTTGATA
*
92009646 TGATTATTATGTTTAGCTAACCGAGAATGAAGAGGCTCAAGTGATAACAAAAAGCTAAGTAGGTG
64 TGATTATTATGTTTAGCTAACCGAGAAGGAAGAGGCTCAAGTGATAACAAAAAGCTAAGTAGGTG
92009711 TAATCAATACCACTTTTCAAGTATTTTGCTGGTGAGTTTCTAAAATCAAA
129 TAATCAATACCACTTTTCAAGTATTTTGCTGGTGAGTTTCTAAAATCAAA
92009761 CTCT
1 CTCT
92009765 ATGTGGTTTT
Statistics
Matches: 165, Mismatches: 13, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
176 2 0.01
177 119 0.72
178 42 0.25
179 2 0.01
ACGTcount: A:0.31, C:0.15, G:0.18, T:0.36
Consensus pattern (178 bp):
CTCTCTGCATGCAAATGAATTATGATTTTCTTACACTTGAAAGCCTTCTTTTCTATCTTGATATG
ATTATTATGTTTAGCTAACCGAGAAGGAAGAGGCTCAAGTGATAACAAAAAGCTAAGTAGGTGTA
ATCAATACCACTTTTCAAGTATTTTGCTGGTGAGTTTCTAAAATCAAA
Found at i:92010804 original size:23 final size:23
Alignment explanation
Indices: 92010767--92010815 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
92010757 CCAGTTTCCT
* *
92010767 ATTTAGTTTTATTTTTACTTGTA
1 ATTTAGGTTTATTTTCACTTGTA
* *
92010790 ATTTAGGTTTCTTTTCAGTTGTA
1 ATTTAGGTTTATTTTCACTTGTA
92010813 ATT
1 ATT
92010816 ATAATTAATT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.20, C:0.06, G:0.12, T:0.61
Consensus pattern (23 bp):
ATTTAGGTTTATTTTCACTTGTA
Found at i:92018427 original size:11 final size:11
Alignment explanation
Indices: 92018411--92018435 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
92018401 TCTAATGGAA
92018411 CTAATAAAAAT
1 CTAATAAAAAT
92018422 CTAATAAAAAT
1 CTAATAAAAAT
92018433 CTA
1 CTA
92018436 TTTTAGCCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.60, C:0.12, G:0.00, T:0.28
Consensus pattern (11 bp):
CTAATAAAAAT
Found at i:92018736 original size:16 final size:15
Alignment explanation
Indices: 92018715--92018744 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
92018705 TTCTCCCCTA
92018715 ATTTATTTAGTTTTTT
1 ATTTATTTA-TTTTTT
92018731 ATTTATTTATTTTT
1 ATTTATTTATTTTT
92018745 CACTCGTTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.20, C:0.00, G:0.03, T:0.77
Consensus pattern (15 bp):
ATTTATTTATTTTTT
Found at i:92019469 original size:20 final size:20
Alignment explanation
Indices: 92019432--92019475 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
92019422 GTTACTGATT
92019432 ATTTTTTTTCTTTCTCTTTC
1 ATTTTTTTTCTTTCTCTTTC
92019452 ATTTTATTTTCTTT-TCTTTC
1 ATTTT-TTTTCTTTCTCTTTC
92019472 -TTTT
1 ATTTT
92019476 CGAATCTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 4 0.17
20 11 0.48
21 8 0.35
ACGTcount: A:0.07, C:0.16, G:0.00, T:0.77
Consensus pattern (20 bp):
ATTTTTTTTCTTTCTCTTTC
Found at i:92019485 original size:26 final size:25
Alignment explanation
Indices: 92019431--92019485 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 25
92019421 GGTTACTGAT
* *
92019431 TATTTTTTTTCTTTCTCTTTCATTT
1 TATTTTTTTTCTTTCTCTTTCAATC
92019456 TATTTTCTTTTCTTTCT-TTTCGAATC
1 TATTTT-TTTTCTTTCTCTTTC-AATC
92019482 TATT
1 TATT
92019486 GTTCCCTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
25 10 0.38
26 16 0.62
ACGTcount: A:0.11, C:0.16, G:0.02, T:0.71
Consensus pattern (25 bp):
TATTTTTTTTCTTTCTCTTTCAATC
Found at i:92020472 original size:12 final size:12
Alignment explanation
Indices: 92020455--92020479 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
92020445 TACTTACTTC
92020455 AAAATATTTTTT
1 AAAATATTTTTT
92020467 AAAATATTTTTT
1 AAAATATTTTTT
92020479 A
1 A
92020480 TACATTCCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (12 bp):
AAAATATTTTTT
Found at i:92020501 original size:2 final size:2
Alignment explanation
Indices: 92020494--92020525 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
92020484 TTCCTTATCT
92020494 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
92020526 ACTTGTGTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:92020619 original size:2 final size:2
Alignment explanation
Indices: 92020612--92020640 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
92020602 TAAACTAATT
92020612 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
92020641 TTCCTTTCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:92021368 original size:89 final size:90
Alignment explanation
Indices: 92021216--92021395 Score: 326
Period size: 89 Copynumber: 2.0 Consensus size: 90
92021206 ATCCCATGTT
* *
92021216 TATTATTCCTCTTTTTATACAGATATTACCTTGTAATTTTCAACTTATTAATTCAAACCAATTAT
1 TATTATTCCTCTTTTTATACAGATATTACCTTGTAATTTTCAACTAACTAATTCAAACCAATTAT
92021281 TCCATTTTATTTCAAGTCAAATCAG
66 TCCATTTTATTTCAAGTCAAATCAG
*
92021306 TATTATTCCTC-TTTTATACGGATATTACCTTGTAATTTTCAACTAACTAATTCAAACCAATTAT
1 TATTATTCCTCTTTTTATACAGATATTACCTTGTAATTTTCAACTAACTAATTCAAACCAATTAT
92021370 TCCATTTTATTTCAAGTCAAATCAG
66 TCCATTTTATTTCAAGTCAAATCAG
92021395 T
1 T
92021396 GTGTTTTGAG
Statistics
Matches: 87, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
89 76 0.87
90 11 0.13
ACGTcount: A:0.32, C:0.18, G:0.05, T:0.44
Consensus pattern (90 bp):
TATTATTCCTCTTTTTATACAGATATTACCTTGTAATTTTCAACTAACTAATTCAAACCAATTAT
TCCATTTTATTTCAAGTCAAATCAG
Found at i:92022350 original size:17 final size:17
Alignment explanation
Indices: 92022328--92022362 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
92022318 ATAATAAGAG
*
92022328 TTAATTACATTCTTGAT
1 TTAATTACATCCTTGAT
92022345 TTAATTACATCCTTGAT
1 TTAATTACATCCTTGAT
92022362 T
1 T
92022363 AAAGTAGAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.14, G:0.06, T:0.51
Consensus pattern (17 bp):
TTAATTACATCCTTGAT
Found at i:92024364 original size:29 final size:29
Alignment explanation
Indices: 92024305--92024365 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 29
92024295 TATAGGGACT
* *
92024305 AAACTGAACAATTCACAAAATTTTAAGTA
1 AAACTGAACAATTCACAAAATGTTAAATA
*
92024334 AAACTGAACAATT-ATAAAATGTTAATATA
1 AAACTGAACAATTCACAAAATGTTAA-ATA
92024363 AAA
1 AAA
92024366 TATATTTTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 10 0.36
29 18 0.64
ACGTcount: A:0.56, C:0.10, G:0.07, T:0.28
Consensus pattern (29 bp):
AAACTGAACAATTCACAAAATGTTAAATA
Found at i:92027363 original size:19 final size:21
Alignment explanation
Indices: 92027325--92027366 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
92027315 TTGTAGGAAA
*
92027325 TATTAAAAAATTATATAAAAT
1 TATTAAAAAATAATATAAAAT
92027346 TATT-AAAAATAATA-AAAAT
1 TATTAAAAAATAATATAAAAT
92027365 TA
1 TA
92027367 AGATTTTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 7 0.35
20 9 0.45
21 4 0.20
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (21 bp):
TATTAAAAAATAATATAAAAT
Found at i:92034962 original size:142 final size:139
Alignment explanation
Indices: 92034708--92034988 Score: 499
Period size: 142 Copynumber: 2.0 Consensus size: 139
92034698 GAAATGGCTC
*
92034708 TCAAAAACCCGGGAAATACAATCCTGCTATTCCAATAAAAAAGCTGTTTTGTCTCCTTTAAGAAT
1 TCAAAAACCCAGGAAATACAATCCTGCTATTCCAATAAAAAAGCTGTTTTGTCTCCTTTAAGAAT
*
92034773 AATTTCCTCTTGCTTGCAAATTATGAGTGATGATTTTGTATTCCCTACAATGCTATTTCCCTATT
66 AATTTCCTCTTGCTTGCAAATTATGAGTGATGATTTTCTATTCCCTACAATGCTATTTCCCTATT
92034838 AGGAACAAA
131 AGGAACAAA
92034847 TCAAAAACCCAGGAAATACAATCCTGCTATTCCAATAAAAAAAAGCTGTTTTTGTCTCCTTTAAG
1 TCAAAAACCCAGGAAATACAATCCTGCTATTCCAAT--AAAAAAGCTG-TTTTGTCTCCTTTAAG
* *
92034912 AATAATTTTCTCTTGCTTGCAAATTATGAGTGATGATTTTCTATTTCCTACAATGCTATTTCCCT
63 AATAATTTCCTCTTGCTTGCAAATTATGAGTGATGATTTTCTATTCCCTACAATGCTATTTCCCT
92034977 ATTAGGAACAAA
128 ATTAGGAACAAA
92034989 GCAATGCAGT
Statistics
Matches: 135, Mismatches: 4, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
139 35 0.26
141 10 0.07
142 90 0.67
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (139 bp):
TCAAAAACCCAGGAAATACAATCCTGCTATTCCAATAAAAAAGCTGTTTTGTCTCCTTTAAGAAT
AATTTCCTCTTGCTTGCAAATTATGAGTGATGATTTTCTATTCCCTACAATGCTATTTCCCTATT
AGGAACAAA
Found at i:92041538 original size:19 final size:19
Alignment explanation
Indices: 92041514--92041551 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
92041504 ATATTAAGAT
92041514 AGCAGGTTCAATACTATAC
1 AGCAGGTTCAATACTATAC
92041533 AGCAGGTTCAATACTATAC
1 AGCAGGTTCAATACTATAC
92041552 CCTTAACATC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.21, G:0.16, T:0.26
Consensus pattern (19 bp):
AGCAGGTTCAATACTATAC
Found at i:92049436 original size:12 final size:12
Alignment explanation
Indices: 92049413--92049446 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
92049403 TTTTTTAAAA
92049413 TAAACTTAACGAT
1 TAAAC-TAACGAT
*
92049426 TTAACTAACGAT
1 TAAACTAACGAT
92049438 TAAACTAAC
1 TAAACTAAC
92049447 AGAGGTACCA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
12 15 0.79
13 4 0.21
ACGTcount: A:0.47, C:0.18, G:0.06, T:0.29
Consensus pattern (12 bp):
TAAACTAACGAT
Found at i:92061985 original size:68 final size:66
Alignment explanation
Indices: 92061868--92062064 Score: 186
Period size: 68 Copynumber: 2.9 Consensus size: 66
92061858 ATACAAATGG
* * * * *
92061868 TATGTAGCTAGGTCACATGTGTGGTGCTGA-GTGCACATCATGT-GTACAAGAGAGCTACGAGAC
1 TATGTAGCTAGGTCGCATGCGTGATACT-ATGTGCACACCATGTAG-ACAAGAGAGCTACGAGAC
92061931 ATTA
64 A-TA
* * *
92061935 TGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACG-G-GA
1 T-ATGTAGCTAGGTCGCATGCGTGATACTATGTGCACACCATGTAGACAAGAGAGCTACGAGACA
92061998 TA
65 TA
* * * * *
92062000 TATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGA
1 TATGTAGCTAGGTCGCATGCGT-GATACTA-TG-TGCACACCATGTAGACAAGAGAGCTACGAGA
92062065 TAAACTGGCT
Statistics
Matches: 109, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
64 20 0.18
65 7 0.06
66 3 0.03
67 29 0.27
68 49 0.45
69 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.24
Consensus pattern (66 bp):
TATGTAGCTAGGTCGCATGCGTGATACTATGTGCACACCATGTAGACAAGAGAGCTACGAGACAT
A
Found at i:92063815 original size:11 final size:11
Alignment explanation
Indices: 92063782--92063816 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
92063772 CGGATTCCCC
92063782 TCCCT-TCTCT
1 TCCCTCTCTCT
92063792 CTCCCTCTCTCT
1 -TCCCTCTCTCT
92063804 TCCCTCTCTCT
1 TCCCTCTCTCT
92063815 TC
1 TC
92063817 TTTTTTTTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 18 0.78
12 5 0.22
ACGTcount: A:0.00, C:0.54, G:0.00, T:0.46
Consensus pattern (11 bp):
TCCCTCTCTCT
Found at i:92064258 original size:3 final size:3
Alignment explanation
Indices: 92064250--92064474 Score: 145
Period size: 3 Copynumber: 72.0 Consensus size: 3
92064240 TGCATTTCAA
92064250 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * *
92064298 TAT TGT TAT TAT TGA- AAT ACAT TAGT GTAT ATCT TCAT GTAT GTAT ATAT
1 TAT TAT TAT TAT T-AT TAT -TAT TA-T -TAT -TAT T-AT -TAT -TAT -TAT
* * * * * *
92064348 ATAT GTAG TAA TGT T-T CTAT TAC T-T TAT T-T TAA TAT TTT TAT TAT
1 -TAT -TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* ** * * *
92064393 AAT GGT TTT TGT GT-T TCAA TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT -TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT TAT
92064439 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
92064475 ATATCCTTGT
Statistics
Matches: 180, Mismatches: 28, Indels: 28
0.76 0.12 0.12
Matches are distributed among these distances:
2 6 0.03
3 145 0.81
4 26 0.14
5 3 0.02
ACGTcount: A:0.31, C:0.03, G:0.06, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:92064748 original size:33 final size:30
Alignment explanation
Indices: 92064690--92064759 Score: 86
Period size: 33 Copynumber: 2.2 Consensus size: 30
92064680 TAATATTATG
*
92064690 TATATATTTTAATATTATCAGTTATATATA
1 TATATATTTTAATACTATCAGTTATATATA
* *
92064720 CTATATGATTTCTAATACTATTATTTATATATA
1 -TATAT-ATTT-TAATACTATCAGTTATATATA
92064753 TATATAT
1 TATATAT
92064760 ATATATTTTC
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
31 7 0.21
32 9 0.26
33 18 0.53
ACGTcount: A:0.39, C:0.06, G:0.03, T:0.53
Consensus pattern (30 bp):
TATATATTTTAATACTATCAGTTATATATA
Found at i:92066192 original size:41 final size:41
Alignment explanation
Indices: 92066108--92066247 Score: 144
Period size: 41 Copynumber: 3.5 Consensus size: 41
92066098 CTGGCATAAA
* * * *
92066108 GCCTGCTAGGC-CTAAGCCTG-TATCACACACCGGCACAAG
1 GCCTGCTAGGCTCAAAGCCTGATTTAATACACCGGCACAAG
* * *
92066147 GCCTGCTAGGCTCAAAGTCTGATTTTATACACCGGCA-ATAA
1 GCCTGCTAGGCTCAAAGCCTGATTTAATACACCGGCACA-AG
* *
92066188 GCCTGCTAGGCAT-AAAGCCTGATTTAATTCACCAGCACAAG
1 GCCTGCTAGGC-TCAAAGCCTGATTTAATACACCGGCACAAG
*
92066229 GCTTGCTAGGCTCAAAGCC
1 GCCTGCTAGGCTCAAAGCC
92066248 CGAATGTCAC
Statistics
Matches: 83, Mismatches: 12, Indels: 10
0.79 0.11 0.10
Matches are distributed among these distances:
39 11 0.13
40 9 0.11
41 61 0.73
42 2 0.02
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (41 bp):
GCCTGCTAGGCTCAAAGCCTGATTTAATACACCGGCACAAG
Found at i:92069760 original size:6 final size:6
Alignment explanation
Indices: 92069749--92069821 Score: 69
Period size: 6 Copynumber: 12.2 Consensus size: 6
92069739 AATTTAGCCA
* * *
92069749 TTTATT TTTA-T TGTATT TTTATT TTTATT TTTATT TTTAGT TTAATT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
* *
92069796 TTTGTT TTCTAATT TTT-CT TTTATT T
1 TTTATT TT-T-ATT TTTATT TTTATT T
92069822 GCTTCTGGTA
Statistics
Matches: 53, Mismatches: 10, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
5 8 0.15
6 39 0.74
7 2 0.04
8 4 0.08
ACGTcount: A:0.16, C:0.03, G:0.04, T:0.77
Consensus pattern (6 bp):
TTTATT
Found at i:92069771 original size:17 final size:18
Alignment explanation
Indices: 92069749--92069787 Score: 62
Period size: 17 Copynumber: 2.2 Consensus size: 18
92069739 AATTTAGCCA
92069749 TTTATTTTTA-TTGTATT
1 TTTATTTTTATTTGTATT
*
92069766 TTTATTTTTATTTTTATT
1 TTTATTTTTATTTGTATT
92069784 TTTA
1 TTTA
92069788 GTTTAATTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 10 0.50
18 10 0.50
ACGTcount: A:0.18, C:0.00, G:0.03, T:0.79
Consensus pattern (18 bp):
TTTATTTTTATTTGTATT
Found at i:92070346 original size:20 final size:20
Alignment explanation
Indices: 92070321--92070362 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
92070311 GGAACAAAGC
92070321 TAAACAGTGGTTGAATTCTT
1 TAAACAGTGGTTGAATTCTT
92070341 TAAACAGTGGTTGAATTCTT
1 TAAACAGTGGTTGAATTCTT
92070361 TA
1 TA
92070363 CCACGAGGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (20 bp):
TAAACAGTGGTTGAATTCTT
Found at i:92072930 original size:11 final size:11
Alignment explanation
Indices: 92072881--92072939 Score: 55
Period size: 11 Copynumber: 5.0 Consensus size: 11
92072871 TATTTTCCTA
*
92072881 ATTTTTATTTT
1 ATTTTAATTTT
**
92072892 ATTTTCTTTATT
1 ATTTTAATT-TT
92072904 ATTTTTATACTTTT
1 A-TTTTA-A-TTTT
92072918 ATTTTAATTTT
1 ATTTTAATTTT
92072929 ATTTTAATTTT
1 ATTTTAATTTT
92072940 CTGCTATTTT
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
11 22 0.55
12 4 0.10
13 9 0.22
14 3 0.08
15 2 0.05
ACGTcount: A:0.22, C:0.03, G:0.00, T:0.75
Consensus pattern (11 bp):
ATTTTAATTTT
Found at i:92072953 original size:6 final size:6
Alignment explanation
Indices: 92072858--92072939 Score: 53
Period size: 6 Copynumber: 13.0 Consensus size: 6
92072848 TTATTTGTTA
*
92072858 TATTATT TATTTT TATTTT CCTAATTTT TA-TTT TATTTT CT-TTAT TATTTT
1 TATT-TT TATTTT TATTTT --T-ATTTT TATTTT TATTTT -TATTTT TATTTT
* *
92072909 TATACTTT TA-TTT TAATTT TATTTT AATTTT
1 TAT--TTT TATTTT TATTTT TATTTT TATTTT
92072940 CTGCTATTTT
Statistics
Matches: 62, Mismatches: 4, Indels: 19
0.73 0.05 0.22
Matches are distributed among these distances:
5 11 0.18
6 34 0.55
7 6 0.10
8 6 0.10
9 5 0.08
ACGTcount: A:0.22, C:0.05, G:0.00, T:0.73
Consensus pattern (6 bp):
TATTTT
Found at i:92073055 original size:12 final size:12
Alignment explanation
Indices: 92073016--92073139 Score: 62
Period size: 12 Copynumber: 9.8 Consensus size: 12
92073006 TATCATTGAG
92073016 TTTATTATTTT-T
1 TTTATT-TTTTAT
* *
92073028 TTTCTTTTTTCGT
1 TTTATTTTTT-AT
92073041 TTTATTTTTTAT
1 TTTATTTTTTAT
92073053 TTTATTTTTTA-
1 TTTATTTTTTAT
*
92073064 TTTATCTTTCT-T
1 TTTAT-TTTTTAT
*
92073076 TTTA--TTTTGT
1 TTTATTTTTTAT
92073086 TTTAGTTTCTTTATT
1 TTTA-TTT-TTTA-T
92073101 TTTATTTATTT-T
1 TTTATTT-TTTAT
92073113 TTTAAATTATTTTAAT
1 TTT--ATT-TTTT-AT
92073129 TATTATTTTTT
1 T-TTATTTTTT
92073140 GAAATATATT
Statistics
Matches: 89, Mismatches: 7, Indels: 30
0.71 0.06 0.24
Matches are distributed among these distances:
9 3 0.03
10 5 0.06
11 9 0.10
12 29 0.33
13 11 0.12
14 19 0.21
15 9 0.10
16 2 0.02
17 2 0.02
ACGTcount: A:0.16, C:0.04, G:0.02, T:0.77
Consensus pattern (12 bp):
TTTATTTTTTAT
Found at i:92073108 original size:10 final size:10
Alignment explanation
Indices: 92073041--92073113 Score: 51
Period size: 10 Copynumber: 6.9 Consensus size: 10
92073031 CTTTTTTCGT
92073041 TTTATTTTTTA
1 TTTA-TTTTTA
92073052 TTTTATTTTTTA
1 -TTTA-TTTTTA
*
92073064 TTTATCTTTCTT
1 TTTAT-TTT-TA
92073076 TTTATTTTGT-
1 TTTATTTT-TA
* *
92073086 TTTA-GTTTC
1 TTTATTTTTA
92073095 TTTATTTTTA
1 TTTATTTTTA
92073105 TTTATTTTT
1 TTTATTTTT
92073114 TTAAATTATT
Statistics
Matches: 52, Mismatches: 5, Indels: 10
0.78 0.07 0.15
Matches are distributed among these distances:
8 1 0.02
9 6 0.12
10 17 0.33
11 11 0.21
12 17 0.33
ACGTcount: A:0.14, C:0.04, G:0.03, T:0.79
Consensus pattern (10 bp):
TTTATTTTTA
Found at i:92077707 original size:5 final size:5
Alignment explanation
Indices: 92077697--92077750 Score: 108
Period size: 5 Copynumber: 10.8 Consensus size: 5
92077687 CAATTTGTGA
92077697 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT
92077747 AAAA
1 AAAA
92077751 ACATAGATTT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 49 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:92084524 original size:26 final size:26
Alignment explanation
Indices: 92084495--92084551 Score: 114
Period size: 26 Copynumber: 2.2 Consensus size: 26
92084485 CTCTTCTAGC
92084495 TTCTATTTCTTGAATCCAACTTGATA
1 TTCTATTTCTTGAATCCAACTTGATA
92084521 TTCTATTTCTTGAATCCAACTTGATA
1 TTCTATTTCTTGAATCCAACTTGATA
92084547 TTCTA
1 TTCTA
92084552 ACTCCCCTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.26, C:0.19, G:0.07, T:0.47
Consensus pattern (26 bp):
TTCTATTTCTTGAATCCAACTTGATA
Found at i:92085943 original size:24 final size:24
Alignment explanation
Indices: 92085890--92085947 Score: 73
Period size: 23 Copynumber: 2.4 Consensus size: 24
92085880 CGAACAATGA
* * *
92085890 TGGTGACCTGGTGTACGTCAGATGG
1 TGGTGA-CTAGTGGACGTCAGACGG
92085915 T-GTGACTAGTGGACGTCAGACGG
1 TGGTGACTAGTGGACGTCAGACGG
92085938 TGGTGACTAG
1 TGGTGACTAG
92085948 CAGTAGGGAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
23 16 0.55
24 12 0.41
25 1 0.03
ACGTcount: A:0.19, C:0.16, G:0.40, T:0.26
Consensus pattern (24 bp):
TGGTGACTAGTGGACGTCAGACGG
Found at i:92086172 original size:21 final size:20
Alignment explanation
Indices: 92086132--92086174 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
92086122 AGGTTAGTGT
**
92086132 TTGGGTTTATTTTTAGTGGA
1 TTGGGTTTATTTGGAGTGGA
92086152 TTGGGTTTATTTCGGAGTGGA
1 TTGGGTTTATTT-GGAGTGGA
92086173 TT
1 TT
92086175 ATTGCCTGGG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 12 0.60
21 8 0.40
ACGTcount: A:0.14, C:0.02, G:0.33, T:0.51
Consensus pattern (20 bp):
TTGGGTTTATTTGGAGTGGA
Found at i:92086432 original size:22 final size:22
Alignment explanation
Indices: 92086407--92086470 Score: 66
Period size: 22 Copynumber: 3.1 Consensus size: 22
92086397 ATATATAGAT
92086407 TATTAATTAATACATTATATTA
1 TATTAATTAATACATTATATTA
* * *
92086429 TATTAA--CATATA-TAGA-T-
1 TATTAATTAATACATTATATTA
92086446 TATTAATTAATACATTATATTA
1 TATTAATTAATACATTATATTA
92086468 TAT
1 TAT
92086471 CAATATATAT
Statistics
Matches: 31, Mismatches: 6, Indels: 10
0.66 0.13 0.21
Matches are distributed among these distances:
17 6 0.19
18 1 0.03
19 7 0.23
20 7 0.23
21 1 0.03
22 9 0.29
ACGTcount: A:0.45, C:0.05, G:0.02, T:0.48
Consensus pattern (22 bp):
TATTAATTAATACATTATATTA
Found at i:92086440 original size:39 final size:39
Alignment explanation
Indices: 92086397--92086480 Score: 150
Period size: 39 Copynumber: 2.2 Consensus size: 39
92086387 AAAAATGTTA
*
92086397 ATATATAGATTATTAATTAATACATTATATTATATTAAC
1 ATATATAGATTATTAATTAATACATTATATTATATCAAC
*
92086436 ATATATAGATTATTAATTAATACATTATATTATATCAAT
1 ATATATAGATTATTAATTAATACATTATATTATATCAAC
92086475 ATATAT
1 ATATAT
92086481 TATACTTAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 43 1.00
ACGTcount: A:0.46, C:0.05, G:0.02, T:0.46
Consensus pattern (39 bp):
ATATATAGATTATTAATTAATACATTATATTATATCAAC
Found at i:92098043 original size:20 final size:21
Alignment explanation
Indices: 92098020--92098068 Score: 57
Period size: 20 Copynumber: 2.4 Consensus size: 21
92098010 TGCTATTACA
92098020 CAATTACACT-AAACATTATC
1 CAATTACACTGAAACATTATC
* *
92098040 CAATTATA-TGAAACATTATT
1 CAATTACACTGAAACATTATC
*
92098060 CTATTACAC
1 CAATTACAC
92098069 AAATAGTAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
19 1 0.04
20 22 0.96
ACGTcount: A:0.43, C:0.20, G:0.02, T:0.35
Consensus pattern (21 bp):
CAATTACACTGAAACATTATC
Found at i:92101652 original size:2 final size:2
Alignment explanation
Indices: 92101645--92101674 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
92101635 ATAAAATGTA
*
92101645 AT AT AT AT AT AT AT AT AT AT TT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
92101675 TACATTTTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:92102052 original size:14 final size:14
Alignment explanation
Indices: 92102033--92102073 Score: 73
Period size: 14 Copynumber: 2.9 Consensus size: 14
92102023 GTTGGGTTAT
92102033 CCTCTCTAACATTC
1 CCTCTCTAACATTC
92102047 CCTCTCTAACATTC
1 CCTCTCTAACATTC
*
92102061 TCTCTCTAACATT
1 CCTCTCTAACATT
92102074 TAAGCATATA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 26 1.00
ACGTcount: A:0.22, C:0.39, G:0.00, T:0.39
Consensus pattern (14 bp):
CCTCTCTAACATTC
Found at i:92117444 original size:45 final size:42
Alignment explanation
Indices: 92117362--92117444 Score: 94
Period size: 45 Copynumber: 1.9 Consensus size: 42
92117352 TTTCTTGTTG
* *
92117362 CTTTTCTTCTTTTCTCGTTCTTTCTTCTTAAAGTCTTGGATC
1 CTTTTCTTCTTTTCTCGTTCTTTCTTCTCAAACTCTTGGATC
* * *
92117404 CTTTTCTTCTCTTTTTCTTTCTTCTTCTTCTCCAACTCTTG
1 CTTTTCTTCT-TTTCTCGTTC-T-TTCTTCTCAAACTCTTG
92117445 AATTCGATTC
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
42 10 0.30
43 8 0.24
44 1 0.03
45 14 0.42
ACGTcount: A:0.07, C:0.28, G:0.06, T:0.59
Consensus pattern (42 bp):
CTTTTCTTCTTTTCTCGTTCTTTCTTCTCAAACTCTTGGATC
Found at i:92124311 original size:14 final size:14
Alignment explanation
Indices: 92124292--92124320 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
92124282 TTATGAGTTG
92124292 AAGAAAGATTATGA
1 AAGAAAGATTATGA
92124306 AAGAAAGATTATGA
1 AAGAAAGATTATGA
92124320 A
1 A
92124321 TAATTATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.21, T:0.21
Consensus pattern (14 bp):
AAGAAAGATTATGA
Found at i:92128997 original size:3 final size:3
Alignment explanation
Indices: 92128989--92129035 Score: 85
Period size: 3 Copynumber: 15.3 Consensus size: 3
92128979 TTAAATACTC
92128989 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA
92129035 T
1 T
92129036 GCATTAGTTT
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
3 40 0.93
4 3 0.07
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:92129457 original size:14 final size:14
Alignment explanation
Indices: 92129440--92129481 Score: 57
Period size: 14 Copynumber: 3.0 Consensus size: 14
92129430 TTTTATAATA
92129440 TTTCATGTATATAT
1 TTTCATGTATATAT
*
92129454 TTTCATGCATATAT
1 TTTCATGTATATAT
* *
92129468 TTTCTTTTATATAT
1 TTTCATGTATATAT
92129482 CGTGTACATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.26, C:0.10, G:0.05, T:0.60
Consensus pattern (14 bp):
TTTCATGTATATAT
Found at i:92141349 original size:7 final size:7
Alignment explanation
Indices: 92141329--92141365 Score: 51
Period size: 7 Copynumber: 5.6 Consensus size: 7
92141319 AGGGCATTTT
92141329 AAAAA-A
1 AAAAAGA
*
92141335 AAAGAGA
1 AAAAAGA
92141342 AAAAAGA
1 AAAAAGA
92141349 AAAAAG-
1 AAAAAGA
92141355 AAAAAGA
1 AAAAAGA
92141362 AAAA
1 AAAA
92141366 GGAGGATCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
6 10 0.37
7 17 0.63
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (7 bp):
AAAAAGA
Found at i:92142418 original size:74 final size:77
Alignment explanation
Indices: 92142258--92142418 Score: 202
Period size: 76 Copynumber: 2.1 Consensus size: 77
92142248 GCCTTTTAAT
* * * * * *
92142258 TTCTGTTTTTTAAAAAAATTAACTCGTATTGCGAGAGGTGAGTTGGGCCTCGAGTTACACGCTGA
1 TTCTGTTTTTTAAAAAAATCAACTCATATTACGAAAGGTGAGTTGAGCCTCGAGTGACACGCTGA
*
92142323 GGTATTTTCAAA
66 GGTAATTTCAAA
* ** *
92142335 TTCTATTTTTT-TCAAAATCAACTCATATTACGAAAGGTGAGTTGAGCCT-TAG-GACACGCTGA
1 TTCTGTTTTTTAAAAAAATCAACTCATATTACGAAAGGTGAGTTGAGCCTCGAGTGACACGCTGA
92142397 GGTAATTTCAAA
66 GGTAATTTCAAA
92142409 TTCTGTTTTT
1 TTCTGTTTTT
92142419 CAAATTTCTG
Statistics
Matches: 72, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
74 29 0.40
75 2 0.03
76 31 0.43
77 10 0.14
ACGTcount: A:0.28, C:0.15, G:0.20, T:0.37
Consensus pattern (77 bp):
TTCTGTTTTTTAAAAAAATCAACTCATATTACGAAAGGTGAGTTGAGCCTCGAGTGACACGCTGA
GGTAATTTCAAA
Found at i:92142421 original size:14 final size:14
Alignment explanation
Indices: 92142402--92142436 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
92142392 GCTGAGGTAA
92142402 TTTCAAA-TTCTGTT
1 TTTCAAATTTCTG-T
92142416 TTTCAAATTTCTGT
1 TTTCAAATTTCTGT
92142430 TTTCAAA
1 TTTCAAA
92142437 AATCAACTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 15 0.75
15 5 0.25
ACGTcount: A:0.26, C:0.14, G:0.06, T:0.54
Consensus pattern (14 bp):
TTTCAAATTTCTGT
Found at i:92142494 original size:87 final size:84
Alignment explanation
Indices: 92142343--92142643 Score: 351
Period size: 87 Copynumber: 3.5 Consensus size: 84
92142333 AATTCTATTT
*
92142343 TTTTC-AAAATCAACTCATATTACGAAAGGTGAGTTGAGCCTTAGGACACGCTGAGGTAATTTCA
1 TTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCC-TAGGACACGCTGAGGTAATTTCA
*
92142407 AATTCTGTTTTTCAAATTTCTG
65 ATTTCTGTTTTT--AATTTCTG
* * *
92142429 TTTTCAAAAATCAACTCATGTTACGAGAGGTGAGTTGAGCCTCAGGACACACTGAGGTAACTTCA
1 TTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCT-AGGACACGCTGAGGTAATTTCA
*
92142494 ATTTCATTTTTTTTAATTTCTG
65 ATTTC--TGTTTTTAATTTCTG
* * *
92142516 CTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGG-CTATGCTGAGGT-ATT
1 -TTTTC--AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTAGGAC-ACGCTGAGGTAATT
*
92142579 TCCAATTTCTG-TTTT-AGTTCATG
62 T-CAATTTCTGTTTTTAATTTC-TG
* *
92142602 TTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
1 TTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCT
92142644 TTTAATTTCT
Statistics
Matches: 190, Mismatches: 15, Indels: 23
0.83 0.07 0.10
Matches are distributed among these distances:
83 37 0.19
85 8 0.04
86 12 0.06
87 66 0.35
88 9 0.05
89 23 0.12
90 35 0.18
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.36
Consensus pattern (84 bp):
TTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTAGGACACGCTGAGGTAATTTCAA
TTTCTGTTTTTAATTTCTG
Found at i:92144538 original size:3 final size:3
Alignment explanation
Indices: 92144530--92144605 Score: 152
Period size: 3 Copynumber: 25.3 Consensus size: 3
92144520 AATACTCTTG
92144530 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
92144578 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
92144606 GCATTAGTTT
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 73 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:92145036 original size:14 final size:14
Alignment explanation
Indices: 92145019--92145060 Score: 57
Period size: 14 Copynumber: 3.0 Consensus size: 14
92145009 TTTTATAATA
92145019 TTTCATGTATATAT
1 TTTCATGTATATAT
*
92145033 TTTCATGCATATAT
1 TTTCATGTATATAT
* *
92145047 TTTCTTTTATATAT
1 TTTCATGTATATAT
92145061 CGTGTACATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.26, C:0.10, G:0.05, T:0.60
Consensus pattern (14 bp):
TTTCATGTATATAT
Found at i:92147023 original size:18 final size:18
Alignment explanation
Indices: 92146982--92147016 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
92146972 TTTTTAAATT
92146982 ATTATTGTTTTATATTAA
1 ATTATTGTTTTATATTAA
92147000 ATTATT-TTTATATATTA
1 ATTATTGTTT-TATATTA
92147017 TGTTATTATG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 3 0.19
18 13 0.81
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (18 bp):
ATTATTGTTTTATATTAA
Found at i:92147189 original size:23 final size:21
Alignment explanation
Indices: 92147142--92147196 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 21
92147132 AAAAATCTAT
92147142 AAAATTATTAAATATTTAATTA
1 AAAATTATTAAATATTTAA-TA
*
92147164 AAAATTATATAAATATATTTA-A
1 AAAATTAT-TAAATAT-TTAATA
92147186 AAAATT-TTAAA
1 AAAATTATTAAA
92147197 AAATAATATG
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
20 4 0.13
21 1 0.03
22 15 0.50
23 7 0.23
24 3 0.10
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (21 bp):
AAAATTATTAAATATTTAATA
Found at i:92149780 original size:19 final size:19
Alignment explanation
Indices: 92149743--92149781 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
92149733 TTTTATTTTA
92149743 TTTTTTTGAAAATTAACTT
1 TTTTTTTGAAAATTAACTT
*
92149762 TTTTTCTTGAGAATT-ACTT
1 TTTTT-TTGAAAATTAACTT
92149781 T
1 T
92149782 GTCATAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.26, C:0.08, G:0.08, T:0.59
Consensus pattern (19 bp):
TTTTTTTGAAAATTAACTT
Found at i:92159947 original size:16 final size:17
Alignment explanation
Indices: 92159917--92159965 Score: 50
Period size: 16 Copynumber: 3.0 Consensus size: 17
92159907 ATTAATCATT
92159917 TTAA-GTATATAATTTTA
1 TTAATGTAT-TAATTTTA
92159934 TT-ATGTATTAA-TTTA
1 TTAATGTATTAATTTTA
* *
92159949 TTAATTTATTATTTTTA
1 TTAATGTATTAATTTTA
92159966 AGGAATTAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
15 6 0.22
16 11 0.41
17 10 0.37
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (17 bp):
TTAATGTATTAATTTTA
Found at i:92160288 original size:17 final size:17
Alignment explanation
Indices: 92160266--92160298 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
92160256 TGGTAGGAAC
*
92160266 ATTTTAATTGTTAATTA
1 ATTTTAATTGGTAATTA
92160283 ATTTTAATTGGTAATT
1 ATTTTAATTGGTAATT
92160299 TTTAGTTATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.33, C:0.00, G:0.09, T:0.58
Consensus pattern (17 bp):
ATTTTAATTGGTAATTA
Found at i:92162592 original size:127 final size:127
Alignment explanation
Indices: 92162429--92162665 Score: 341
Period size: 127 Copynumber: 1.9 Consensus size: 127
92162419 AATTCAAATT
* * *
92162429 GGATTTTGAGGTTCACTCGCTTCGAAGAAATAAAATACCACATCCAGCACCTTAGGACACAATAC
1 GGATTTTGAGATTCACTCGATTCAAAGAAATAAAATACCACATCCAGCACCTTAGGACACAATAC
* *
92162494 TTTAAGCCTCCAAAAACTAAGATCACCTCATGATTTCCAAAACACACGAAGCAGCTCCAATC
66 TTTAAGCCTCCAAAAACCAAGATCACCTCATAATTTCCAAAACACACGAAGCAGCTCCAATC
* * * * *
92162556 GGATTTTGAGATTCACTC-ATTCCAAAGGAATGAAATACCACATCCAGTACGTTAGGACACGATA
1 GGATTTTGAGATTCACTCGATT-CAAAGAAATAAAATACCACATCCAGCACCTTAGGACACAATA
* * *
92162620 TTTTAAGCCTCCAAAAACCAAGATCACTTTATAATTTCCAAAACAC
65 CTTTAAGCCTCCAAAAACCAAGATCACCTCATAATTTCCAAAACAC
92162666 GCGACGAAAA
Statistics
Matches: 96, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
126 2 0.02
127 94 0.98
ACGTcount: A:0.38, C:0.25, G:0.13, T:0.24
Consensus pattern (127 bp):
GGATTTTGAGATTCACTCGATTCAAAGAAATAAAATACCACATCCAGCACCTTAGGACACAATAC
TTTAAGCCTCCAAAAACCAAGATCACCTCATAATTTCCAAAACACACGAAGCAGCTCCAATC
Found at i:92164951 original size:45 final size:44
Alignment explanation
Indices: 92164864--92164960 Score: 142
Period size: 45 Copynumber: 2.2 Consensus size: 44
92164854 GGTGGCTAAA
92164864 ATCTGCTCCATAGCCGATACATGGAGATAAGACTCACCATCTTCG
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACTCA-CATCTTCG
*
92164909 ATCTGCTCCATAGTCGATACATGGAGATAAGATCTGCA-ATCTTCG
1 ATCTGCTCCATAGCCGATACATGGAGATAAGA-CT-CACATCTTCG
*
92164954 GTCTGCT
1 ATCTGCT
92164961 TCCTGCAACT
Statistics
Matches: 48, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
45 44 0.92
46 2 0.04
47 2 0.04
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.28
Consensus pattern (44 bp):
ATCTGCTCCATAGCCGATACATGGAGATAAGACTCACATCTTCG
Found at i:92165087 original size:176 final size:176
Alignment explanation
Indices: 92164833--92165305 Score: 741
Period size: 176 Copynumber: 2.7 Consensus size: 176
92164823 TGCTCCACTG
*
92164833 CAACTTCAGAGGGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACT
1 CAACTTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACT
* * * *
92164898 CACCATCTTCGATCTGCTCCATAGTCGATACATGGAGATAAGATCTGCAATCTTCGGTCTGCTTC
66 CGCCATTTTCGATCTGCTCCATAGCCGATACATGGAGATAAGATCTGCAATCTTCAGTCTGCTTC
* *
92164963 CTGCAACTTCAGAAAGACAAGACTTGTATCTTCAACCTGCTCTCTA
131 CTGCAACTTCAGAAAGACAAGACTTGCATCTTCAACCTGCCCTCTA
92165009 CAACTTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACT
1 CAACTTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACT
* * * *
92165074 CGCCATTTTCGATCTGCTCCATAGCCAATACGTGGAGATAAGATCTGTAATTTTCAGTCTGCTTC
66 CGCCATTTTCGATCTGCTCCATAGCCGATACATGGAGATAAGATCTGCAATCTTCAGTCTGCTTC
* * *
92165139 CTGCAACTTCAGGAAGATAAGACTTGCATCTTCAACCTGCCCTCTG
131 CTGCAACTTCAGAAAGACAAGACTTGCATCTTCAACCTGCCCTCTA
* * ** *
92165185 CAACTTTAGAAAGATAAGAATGGTGGCTAAAATCTGCTCCATAGCCGATACATAGAGATAAGACT
1 CAACTTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACT
* *
92165250 CGCCATTCTT-GATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCA
66 CGCCATT-TTCGATCTGCTCCATAGCCGATACATGGAGATAAGATCTGCAATCTTCA
92165306 CTGATGTCGC
Statistics
Matches: 275, Mismatches: 21, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
176 273 0.99
177 2 0.01
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (176 bp):
CAACTTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACT
CGCCATTTTCGATCTGCTCCATAGCCGATACATGGAGATAAGATCTGCAATCTTCAGTCTGCTTC
CTGCAACTTCAGAAAGACAAGACTTGCATCTTCAACCTGCCCTCTA
Found at i:92165127 original size:45 final size:44
Alignment explanation
Indices: 92165040--92165136 Score: 124
Period size: 45 Copynumber: 2.2 Consensus size: 44
92165030 GGTGGCTAAA
* *
92165040 ATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTC
1 ATCTGCTCCATAGCCAATACATGGAGATAAGACTCGCAATTTTC
* *
92165084 GATCTGCTCCATAGCCAATACGTGGAGATAAGA-TCTGTAATTTTC
1 -ATCTGCTCCATAGCCAATACATGGAGATAAGACTC-GCAATTTTC
92165129 AGTCTGCT
1 A-TCTGCT
92165137 TCCTGCAACT
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
44 3 0.07
45 43 0.93
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.30
Consensus pattern (44 bp):
ATCTGCTCCATAGCCAATACATGGAGATAAGACTCGCAATTTTC
Found at i:92178467 original size:35 final size:35
Alignment explanation
Indices: 92178423--92178589 Score: 201
Period size: 35 Copynumber: 4.6 Consensus size: 35
92178413 TCCTCATTGA
** *
92178423 AATACCATACCTACATTTTTCAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTAT-GGAT
* **
92178458 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
92178498 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
92178533 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
92178568 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
92178590 CTTTGCCATG
Statistics
Matches: 117, Mismatches: 10, Indels: 10
0.85 0.07 0.07
Matches are distributed among these distances:
35 87 0.74
39 3 0.03
40 27 0.23
ACGTcount: A:0.34, C:0.25, G:0.11, T:0.31
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:92178506 original size:75 final size:73
Alignment explanation
Indices: 92178418--92178589 Score: 226
Period size: 75 Copynumber: 2.4 Consensus size: 73
92178408 GGTTTTCCTC
** * * **
92178418 ATTGAAATACCATACCTACATTTTTCAACTCGGTATGGGA-AATGCCATACCTACATTTCTTAAC
1 ATTGAAATACCATACCTACATTTCACAACTCAGTAT-GGATAATACCATACCTACATTTCACAAC
92178482 TCAGTATGG
65 TCAGTATGG
*
92178491 ATTTGATAATACCATACCTACATTTCACAGCTCAGTATGGATAATACCATACCTACATTTCACAA
1 A-TTGA-AATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAA
92178556 CTCAGTATGG
64 CTCAGTATGG
92178566 A-TG--ATACCATACCTACATTTCACA
1 ATTGAAATACCATACCTACATTTCACA
92178590 CTTTGCCATG
Statistics
Matches: 89, Mismatches: 7, Indels: 9
0.85 0.07 0.09
Matches are distributed among these distances:
70 21 0.24
73 3 0.03
74 7 0.08
75 58 0.65
ACGTcount: A:0.34, C:0.24, G:0.11, T:0.31
Consensus pattern (73 bp):
ATTGAAATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAACT
CAGTATGG
Found at i:92185935 original size:35 final size:35
Alignment explanation
Indices: 92185891--92186057 Score: 201
Period size: 35 Copynumber: 4.6 Consensus size: 35
92185881 TCCTCATTGA
** *
92185891 AATACCATACCTACATTTTTCAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTAT-GGAT
* **
92185926 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
92185966 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
92186001 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
92186036 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
92186058 CTTTGCCATG
Statistics
Matches: 117, Mismatches: 10, Indels: 10
0.85 0.07 0.07
Matches are distributed among these distances:
35 87 0.74
39 3 0.03
40 27 0.23
ACGTcount: A:0.34, C:0.25, G:0.11, T:0.31
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:92185974 original size:75 final size:73
Alignment explanation
Indices: 92185886--92186057 Score: 226
Period size: 75 Copynumber: 2.4 Consensus size: 73
92185876 GGTTTTCCTC
** * * **
92185886 ATTGAAATACCATACCTACATTTTTCAACTCGGTATGGGA-AATGCCATACCTACATTTCTTAAC
1 ATTGAAATACCATACCTACATTTCACAACTCAGTAT-GGATAATACCATACCTACATTTCACAAC
92185950 TCAGTATGG
65 TCAGTATGG
*
92185959 ATTTGATAATACCATACCTACATTTCACAGCTCAGTATGGATAATACCATACCTACATTTCACAA
1 A-TTGA-AATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAA
92186024 CTCAGTATGG
64 CTCAGTATGG
92186034 A-TG--ATACCATACCTACATTTCACA
1 ATTGAAATACCATACCTACATTTCACA
92186058 CTTTGCCATG
Statistics
Matches: 89, Mismatches: 7, Indels: 9
0.85 0.07 0.09
Matches are distributed among these distances:
70 21 0.24
73 3 0.03
74 7 0.08
75 58 0.65
ACGTcount: A:0.34, C:0.24, G:0.11, T:0.31
Consensus pattern (73 bp):
ATTGAAATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAACT
CAGTATGG
Found at i:92188118 original size:16 final size:16
Alignment explanation
Indices: 92188099--92188129 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
92188089 CCTCTCTCAT
92188099 TTCTCCCCTCCCTCTC
1 TTCTCCCCTCCCTCTC
*
92188115 TTCTCCCCTCTCTCT
1 TTCTCCCCTCCCTCT
92188130 TTTTCTTTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.00, C:0.58, G:0.00, T:0.42
Consensus pattern (16 bp):
TTCTCCCCTCCCTCTC
Found at i:92188565 original size:17 final size:18
Alignment explanation
Indices: 92188543--92188576 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
92188533 TTCAATTTCG
*
92188543 TCCTGTT-TTTTACTTTT
1 TCCTGTTATTCTACTTTT
92188560 TCCTGTTATTCTACTTT
1 TCCTGTTATTCTACTTT
92188577 AATTTTATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.09, C:0.21, G:0.06, T:0.65
Consensus pattern (18 bp):
TCCTGTTATTCTACTTTT
Found at i:92201961 original size:21 final size:21
Alignment explanation
Indices: 92201931--92201970 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
92201921 ATTAATAATA
92201931 ATACTAATAT-TACATAAAGGT
1 ATACTAATATATAC-TAAAGGT
*
92201952 ATACTTATATATACTAAAG
1 ATACTAATATATACTAAAG
92201971 TTATGTACAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 14 0.82
22 3 0.18
ACGTcount: A:0.47, C:0.10, G:0.07, T:0.35
Consensus pattern (21 bp):
ATACTAATATATACTAAAGGT
Found at i:92202043 original size:3 final size:3
Alignment explanation
Indices: 92202029--92202120 Score: 68
Period size: 3 Copynumber: 30.7 Consensus size: 3
92202019 TACATAACAT
*
92202029 ATA ATA AAA ATA ATA AT- ATA CATA AT- ATA TATA A-A ATA CATA TATA
1 ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA -ATA ATA ATA -ATA -ATA
* * *
92202075 ACA A-A ACA TATA CT- ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
92202119 AT
1 AT
92202121 GTAAAAAAAA
Statistics
Matches: 73, Mismatches: 7, Indels: 18
0.74 0.07 0.18
Matches are distributed among these distances:
2 9 0.12
3 50 0.68
4 14 0.19
ACGTcount: A:0.63, C:0.05, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:92204275 original size:71 final size:70
Alignment explanation
Indices: 92204173--92204316 Score: 207
Period size: 71 Copynumber: 2.0 Consensus size: 70
92204163 TTATTTCTAT
* * * * *
92204173 TTTCAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAGT
1 TTTCAAAATCAACTCATATTACGAGAAGTGAGTTGAGCCTCAAGACACGCTGAAGTAATTTCAAT
92204238 TTATG
66 TTATG
* *
92204243 TTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAAGTAATTTCAA
1 TTTC-AAAATCAACTCATATTACGAGAAGTGAGTTGAGCCTCAAGACACGCTGAAGTAATTTCAA
*
92204308 TTTCTG
65 TTTATG
92204314 TTT
1 TTT
92204317 TTCAATTTCT
Statistics
Matches: 65, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
70 4 0.06
71 61 0.94
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.33
Consensus pattern (70 bp):
TTTCAAAATCAACTCATATTACGAGAAGTGAGTTGAGCCTCAAGACACGCTGAAGTAATTTCAAT
TTATG
Found at i:92204332 original size:14 final size:14
Alignment explanation
Indices: 92204302--92204335 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
92204292 GCTGAAGTAA
**
92204302 TTTCAATTTCTGTT
1 TTTCAATTTCTACT
92204316 TTTCAATTTCTACT
1 TTTCAATTTCTACT
92204330 TTTCAA
1 TTTCAA
92204336 AAATCAACTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.21, C:0.18, G:0.03, T:0.59
Consensus pattern (14 bp):
TTTCAATTTCTACT
Found at i:92204389 original size:87 final size:87
Alignment explanation
Indices: 92204243--92204408 Score: 278
Period size: 87 Copynumber: 1.9 Consensus size: 87
92204233 TCAGTTTATG
* *
92204243 TTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAAGTAATTTCAA
1 TTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGAACACGCTGAAGTAATTGCAA
* *
92204308 TTTCTGTTTTTCAATTTCTACT
66 TTTCTATGTTTCAATTTCTACT
* *
92204330 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACACGCTGAGGTAATTGCAA
1 TTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGAACACGCTGAAGTAATTGCAA
92204395 TTTCTATGTTTCAA
66 TTTCTATGTTTCAA
92204409 AAATCAACTC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
87 73 1.00
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Consensus pattern (87 bp):
TTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGAACACGCTGAAGTAATTGCAA
TTTCTATGTTTCAATTTCTACT
Found at i:92204496 original size:75 final size:73
Alignment explanation
Indices: 92204314--92204514 Score: 242
Period size: 75 Copynumber: 2.7 Consensus size: 73
92204304 TCAATTTCTG
*
92204314 TTTTTCAATTTCTACTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACAC
1 TTTTT-AATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACAC
*
92204379 GCTGAGGTA
65 GCCGAGGTA
* ** * * * * *
92204388 ATTGCAATTTCTATGTTTCAAAAATCAACTCATATGGCGAAAGGAGAGTTGAGCCT-AGGCTCAC
1 TTTTTAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-G--AAC
92204452 ACGCCGAGGTA
63 ACGCCGAGGTA
* * *
92204463 TTTTTAATTTCTGTTTTTCAAAAATCGATTCATATTGCGAGAGGTGAGTTGA
1 TTTTTAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
92204515 ACCTTTTTAA
Statistics
Matches: 104, Mismatches: 20, Indels: 5
0.81 0.16 0.04
Matches are distributed among these distances:
72 1 0.01
73 47 0.45
74 2 0.02
75 54 0.52
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (73 bp):
TTTTTAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACACG
CCGAGGTA
Found at i:92204551 original size:55 final size:55
Alignment explanation
Indices: 92204463--92204623 Score: 243
Period size: 55 Copynumber: 2.9 Consensus size: 55
92204453 CGCCGAGGTA
*
92204463 TTTTTAATTTCTGTTTTTCAAAAATCGATTCATATTGCGAGAGGTGAGTTGAACC
1 TTTTTAATTTCTGTTTTTCAAAAATCGACTCATATTGCGAGAGGTGAGTTGAACC
* *
92204518 TTTTTAATCTCTGTTTTTCAAAAATCGACTCATATTGCGAGAGGTGAGTTAAACC
1 TTTTTAATTTCTGTTTTTCAAAAATCGACTCATATTGCGAGAGGTGAGTTGAACC
* * * * *
92204573 -TTTTAATTTATATTATTCAAAAGTCAACTCATATTGCGAGAGGTGAGTTGA
1 TTTTTAATTTCTGTTTTTCAAAAATCGACTCATATTGCGAGAGGTGAGTTGA
92204624 GCCTCAGGTC
Statistics
Matches: 96, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
54 44 0.46
55 52 0.54
ACGTcount: A:0.30, C:0.13, G:0.17, T:0.40
Consensus pattern (55 bp):
TTTTTAATTTCTGTTTTTCAAAAATCGACTCATATTGCGAGAGGTGAGTTGAACC
Found at i:92205591 original size:23 final size:23
Alignment explanation
Indices: 92205547--92205594 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
92205537 GAAACCCTAA
92205547 CCTGCTCAGCGCCACAACCACCC
1 CCTGCTCAGCGCCACAACCACCC
*
92205570 CCTGCTCAGCGCCGCAACCACCC
1 CCTGCTCAGCGCCACAACCACCC
92205593 CC
1 CC
92205595 CCTACTTGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.19, C:0.58, G:0.15, T:0.08
Consensus pattern (23 bp):
CCTGCTCAGCGCCACAACCACCC
Done.