Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 295 of 318
Found at i:92621790 original size:22 final size:22
Alignment explanation
Indices: 92621759--92621800 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
92621749 ATGGGTTAGT
92621759 GGTTAGGGGTTAAGGGTTTATA
1 GGTTAGGGGTTAAGGGTTTATA
* *
92621781 GGTTATGGGTTAATGGTTTA
1 GGTTAGGGGTTAAGGGTTTA
92621801 GGGGTTAATG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.21, C:0.00, G:0.38, T:0.40
Consensus pattern (22 bp):
GGTTAGGGGTTAAGGGTTTATA
Found at i:92621815 original size:14 final size:15
Alignment explanation
Indices: 92621787--92621821 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
92621777 TATAGGTTAT
*
92621787 GGGTTAATGGTTTAG
1 GGGTTAATGGCTTAG
92621802 GGGTTAAT-GCTTAG
1 GGGTTAATGGCTTAG
92621816 GGGTTA
1 GGGTTA
92621822 TTATTTTATG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 11 0.58
15 8 0.42
ACGTcount: A:0.20, C:0.03, G:0.40, T:0.37
Consensus pattern (15 bp):
GGGTTAATGGCTTAG
Found at i:92621934 original size:100 final size:100
Alignment explanation
Indices: 92621818--92622163 Score: 336
Period size: 100 Copynumber: 3.4 Consensus size: 100
92621808 ATGCTTAGGG
* *
92621818 GTTATTATTTTATGGTTTAAGG-TTTAGAGGATATAGTTTAGGGTACTTTAGTAGGGGATATAGT
1 GTTATTATTTTATGGTTTAAGGATTAAG-GGATATAGTTTAGGGTACTTTAGTAGGTGATATAGT
92621882 TTAATGGTTTAAGGTTTAGAGTATTGATTAATTAGT
65 TTAATGGTTTAAGGTTTAGAGTATTGATTAATTAGT
* * * ** * *
92621918 GTTATTATTTTGTGGTTTAAGGATT-AGGAGATATAGTTTAGGGT--TATGATTAATTCATACA-
1 GTTATTATTTTATGGTTTAAGGATTAAGG-GATATAGTTTAGGGTACT-TTAGTAGGTGATATAG
* *
92621979 TTT--TGTTGTTAAGGTTTAGGGGTTATTG-TT--TT-GT
64 TTTAATGGT-TTAAGGTTTA-GAG-TATTGATTAATTAGT
** * * * *
92622013 GGTTTATGGTTAGGTGATATAGTTCAGGGTTTAAGGGATATAGTTTAGGGTACTTTAGTAGGTGA
1 -G-TTA---TTA--TTTTATGGTTTAAGGATTAAGGGATATAGTTTAGGGTACTTTAGTAGGTGA
92622078 TATAGTTTAATGGTTTAAGGTTTAGAGTATTGATTAATTAGT
59 TATAGTTTAATGGTTTAAGGTTTAGAGTATTGATTAATTAGT
*
92622120 GTTATTATTTTATGGTTTAAGGATCAAGGGATATAGTTTAGGGT
1 GTTATTATTTTATGGTTTAAGGATTAAGGGATATAGTTTAGGGT
92622164 TATGATTAAT
Statistics
Matches: 191, Mismatches: 32, Indels: 46
0.71 0.12 0.17
Matches are distributed among these distances:
95 2 0.01
96 6 0.03
97 13 0.07
98 8 0.04
99 14 0.07
100 71 0.37
101 2 0.01
102 29 0.15
103 17 0.09
104 8 0.04
105 13 0.07
106 6 0.03
107 2 0.01
ACGTcount: A:0.26, C:0.02, G:0.27, T:0.45
Consensus pattern (100 bp):
GTTATTATTTTATGGTTTAAGGATTAAGGGATATAGTTTAGGGTACTTTAGTAGGTGATATAGTT
TAATGGTTTAAGGTTTAGAGTATTGATTAATTAGT
Found at i:92622079 original size:27 final size:23
Alignment explanation
Indices: 92622023--92622086 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 23
92622013 GGTTTATGGT
*
92622023 TAGGTGATATAGTTCAGGGTTTA
1 TAGGTGATATAGTTTAGGGTTTA
92622046 -AGG-GATATAGTTTAGGGTACTTTA
1 TAGGTGATATAGTTTAGGG---TTTA
92622070 GTAGGTGATATAGTTTA
1 -TAGGTGATATAGTTTA
92622087 ATGGTTTAAG
Statistics
Matches: 34, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
21 13 0.38
22 3 0.09
24 4 0.12
26 3 0.09
27 11 0.32
ACGTcount: A:0.28, C:0.03, G:0.30, T:0.39
Consensus pattern (23 bp):
TAGGTGATATAGTTTAGGGTTTA
Found at i:92622194 original size:202 final size:201
Alignment explanation
Indices: 92621838--92622326 Score: 768
Period size: 202 Copynumber: 2.4 Consensus size: 201
92621828 TATGGTTTAA
92621838 GGTTT-AGAGGATATAGTTTAGGGTACTTTAGTAGGGGATATAGTTTAATGGTTTAAGGTTTAGA
1 GGTTTAAG-GGATATAGTTTAGGGTACTTTAGTA-GGGATATAGTTTAATGGTTTAAGGTTTAGA
* *
92621902 GTATTGATTAATTAGTGTTATTATTTTGTGGTTTAAGGATTAGGAGATATAGTTTAGGGTTATGA
64 GTATTGATTAATTAGTGTTATTATTTTATGGTTTAAGGATAAGGAGATATAGTTTAGGGTTATGA
* * *
92621967 TTAATTCATACATTTTGTTGTTAAGGTTTAGGGGTTATTGTTTTGTGGTTTATGGTTAGGTGATA
129 TTAATTCATACATTTTGTGGTTAAGGCTTAGGGGTTATTGTTTTGTGGTTTATGGTTAGGGGATA
92622032 TAGTTCAG
194 TAGTTCAG
92622040 GGTTTAAGGGATATAGTTTAGGGTACTTTAGTAGGTGATATAGTTTAATGGTTTAAGGTTTAGAG
1 GGTTTAAGGGATATAGTTTAGGGTACTTTAGTAGG-GATATAGTTTAATGGTTTAAGGTTTAGAG
92622105 TATTGATTAATTAGTGTTATTATTTTATGGTTTAAGGATCAAGG-GATATAGTTTAGGGTTATGA
65 TATTGATTAATTAGTGTTATTATTTTATGGTTTAAGGAT-AAGGAGATATAGTTTAGGGTTATGA
92622169 TTAATTCATACATTTTGTGGTTAAGGCTTAGGGGTTATTGTTTTGTGGTTTATGGTTAGGGGATA
129 TTAATTCATACATTTTGTGGTTAAGGCTTAGGGGTTATTGTTTTGTGGTTTATGGTTAGGGGATA
*
92622234 TAGTTTAG
194 TAGTTCAG
* * * ** * *
92622242 GGTGTAGGGGATATACTTTAGGGTTTAAGGTTA-TAAGGATATAGTTTAATGGTTTAAGGTTAAG
1 GGTTTAAGGGATATAGTTTAGGG--T-ACTTTAGTAGGGATATAGTTTAATGGTTTAAGGTTTAG
*
92622306 AGTTTTGATTAATTAGTGTTA
63 AGTATTGATTAATTAGTGTTA
92622327 ATAATATTAA
Statistics
Matches: 267, Mismatches: 14, Indels: 11
0.91 0.05 0.04
Matches are distributed among these distances:
201 2 0.01
202 206 0.77
203 51 0.19
204 4 0.01
205 4 0.01
ACGTcount: A:0.26, C:0.02, G:0.28, T:0.44
Consensus pattern (201 bp):
GGTTTAAGGGATATAGTTTAGGGTACTTTAGTAGGGATATAGTTTAATGGTTTAAGGTTTAGAGT
ATTGATTAATTAGTGTTATTATTTTATGGTTTAAGGATAAGGAGATATAGTTTAGGGTTATGATT
AATTCATACATTTTGTGGTTAAGGCTTAGGGGTTATTGTTTTGTGGTTTATGGTTAGGGGATATA
GTTCAG
Found at i:92622227 original size:28 final size:28
Alignment explanation
Indices: 92622181--92622239 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
92622171 AATTCATACA
* *
92622181 TTTTGTGGTTAAGGCTTAGGGGTTATTG
1 TTTTGTGGTTAAGGCTTAGGGGATATAG
*
92622209 TTTTGTGGTTTATGG-TTAGGGGATATAG
1 TTTTGTGG-TTAAGGCTTAGGGGATATAG
92622237 TTT
1 TTT
92622240 AGGGTGTAGG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
28 22 0.81
29 5 0.19
ACGTcount: A:0.15, C:0.02, G:0.34, T:0.49
Consensus pattern (28 bp):
TTTTGTGGTTAAGGCTTAGGGGATATAG
Found at i:92622250 original size:21 final size:20
Alignment explanation
Indices: 92622216--92622266 Score: 75
Period size: 21 Copynumber: 2.5 Consensus size: 20
92622206 TTGTTTTGTG
*
92622216 GTTTATGGTTAGGGGATATA
1 GTTTAGGGTTAGGGGATATA
92622236 GTTTAGGGTGTAGGGGATATA
1 GTTTAGGGT-TAGGGGATATA
*
92622257 CTTTAGGGTT
1 GTTTAGGGTT
92622267 TAAGGTTATA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 9 0.32
21 19 0.68
ACGTcount: A:0.22, C:0.02, G:0.37, T:0.39
Consensus pattern (20 bp):
GTTTAGGGTTAGGGGATATA
Found at i:92625205 original size:14 final size:13
Alignment explanation
Indices: 92625182--92625211 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
92625172 ATTACTATAA
92625182 TAATTATATGAAG
1 TAATTATATGAAG
92625195 TAATATATATGAAG
1 TAAT-TATATGAAG
92625209 TAA
1 TAA
92625212 AATTATATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.50, C:0.00, G:0.13, T:0.37
Consensus pattern (13 bp):
TAATTATATGAAG
Found at i:92625897 original size:14 final size:15
Alignment explanation
Indices: 92625878--92625987 Score: 87
Period size: 18 Copynumber: 6.5 Consensus size: 15
92625868 AATCTTCAAT
92625878 GATATG-CAATCTTA
1 GATATGACAATCTTA
92625892 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
92625909 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
92625927 GATATGATATGCAATCTTA
1 GATATG--A--CAATCTTA
92625946 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
92625963 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
92625981 GATATGA
1 GATATGA
92625988 TATGCAATCT
Statistics
Matches: 85, Mismatches: 0, Indels: 18
0.83 0.00 0.17
Matches are distributed among these distances:
14 6 0.07
15 2 0.02
17 28 0.33
18 29 0.34
19 19 0.22
20 1 0.01
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.36
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:92625922 original size:35 final size:36
Alignment explanation
Indices: 92625876--92626001 Score: 195
Period size: 35 Copynumber: 3.5 Consensus size: 36
92625866 ATAATCTTCA
92625876 ATGATATGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATACAATCTTAGAT
92625912 ATGAT-TGCAATCTTAGATATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATA--CAATCTTAGAT
*
92625949 ATGATA--CAATCTTAGATATGATTGCAATCTTAGAT
1 ATGATATGCAATCTTAGATATGA-TACAATCTTAGAT
92625984 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
92626002 AGATATGATT
Statistics
Matches: 83, Mismatches: 1, Indels: 11
0.87 0.01 0.12
Matches are distributed among these distances:
35 36 0.43
36 20 0.24
37 27 0.33
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (36 bp):
ATGATATGCAATCTTAGATATGATACAATCTTAGAT
Found at i:92625934 original size:54 final size:54
Alignment explanation
Indices: 92625876--92626001 Score: 252
Period size: 54 Copynumber: 2.3 Consensus size: 54
92625866 ATAATCTTCA
92625876 ATGATATGCAATCTTAGATATGATACAATCTTAGATATGATTGCAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATACAATCTTAGATATGATTGCAATCTTAGAT
92625930 ATGATATGCAATCTTAGATATGATACAATCTTAGATATGATTGCAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATACAATCTTAGATATGATTGCAATCTTAGAT
92625984 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
92626002 AGATATGATT
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 72 1.00
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (54 bp):
ATGATATGCAATCTTAGATATGATACAATCTTAGATATGATTGCAATCTTAGAT
Found at i:92626008 original size:17 final size:19
Alignment explanation
Indices: 92625876--92626001 Score: 210
Period size: 19 Copynumber: 6.9 Consensus size: 19
92625866 ATAATCTTCA
92625876 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
92625895 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
92625912 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
92625930 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
92625949 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
92625966 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
92625984 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
92626002 AGATATGATT
Statistics
Matches: 101, Mismatches: 0, Indels: 12
0.89 0.00 0.11
Matches are distributed among these distances:
17 32 0.32
18 32 0.32
19 37 0.37
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:92626027 original size:22 final size:22
Alignment explanation
Indices: 92625876--92626024 Score: 103
Period size: 19 Copynumber: 7.8 Consensus size: 22
92625866 ATAATCTTCA
92625876 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
92625895 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
92625912 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
92625930 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
92625949 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
92625966 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
92625984 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
92626006 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
92626025 GATTTAATTT
Statistics
Matches: 118, Mismatches: 2, Indels: 16
0.87 0.01 0.12
Matches are distributed among these distances:
17 32 0.27
18 32 0.27
19 34 0.29
22 8 0.07
23 12 0.10
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:92628208 original size:13 final size:13
Alignment explanation
Indices: 92628190--92628214 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
92628180 AGTTTATATG
92628190 TTATTTGATTTTT
1 TTATTTGATTTTT
92628203 TTATTTGATTTT
1 TTATTTGATTTT
92628215 AATTACTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.00, G:0.08, T:0.76
Consensus pattern (13 bp):
TTATTTGATTTTT
Found at i:92628939 original size:9 final size:9
Alignment explanation
Indices: 92628925--92629011 Score: 57
Period size: 9 Copynumber: 10.7 Consensus size: 9
92628915 CCAGCAACTC
92628925 ACATAATTT
1 ACATAATTT
92628934 ACATAATTT
1 ACATAATTT
92628943 ACAT-A--T
1 ACATAATTT
*
92628949 ACATAACTT
1 ACATAATTT
92628958 ACATAATTT
1 ACATAATTT
*
92628967 --A-AAGTT
1 ACATAATTT
92628973 -CA-AATTT
1 ACATAATTT
* *
92628980 -CATAACTG
1 ACATAATTT
92628988 ACATAATTT
1 ACATAATTT
* *
92628997 ACTTAACTT
1 ACATAATTT
92629006 ACATAA
1 ACATAA
92629012 GACATGACTT
Statistics
Matches: 62, Mismatches: 10, Indels: 12
0.74 0.12 0.14
Matches are distributed among these distances:
6 9 0.15
7 9 0.15
8 4 0.06
9 40 0.65
ACGTcount: A:0.45, C:0.15, G:0.02, T:0.38
Consensus pattern (9 bp):
ACATAATTT
Found at i:92628953 original size:15 final size:15
Alignment explanation
Indices: 92628933--92628962 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
92628923 TCACATAATT
*
92628933 TACATAATTTACATA
1 TACATAACTTACATA
92628948 TACATAACTTACATA
1 TACATAACTTACATA
92628963 ATTTAAAGTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.47, C:0.17, G:0.00, T:0.37
Consensus pattern (15 bp):
TACATAACTTACATA
Found at i:92628986 original size:30 final size:33
Alignment explanation
Indices: 92628920--92629190 Score: 137
Period size: 30 Copynumber: 8.5 Consensus size: 33
92628910 GTTCACCAGC
* * *
92628920 AACTCACATAATTTACATAATTTACAT-A-TACAT
1 AACTTACATAATTT--ATAAGTTACATAATTTCAT
92628953 AACTTACATAATTTA-AAGTT-CA-AATTTCAT
1 AACTTACATAATTTATAAGTTACATAATTTCAT
* * **
92628983 AACTGACATAATTTACTTAACTTACATAA-GACAT
1 AACTTACATAATTTA--TAAGTTACATAATTTCAT
* *
92629017 GACTTACATAATTTA-AAGAT-CA-AATTTCAT
1 AACTTACATAATTTATAAGTTACATAATTTCAT
* * ** *
92629047 AACTTATATGATACATAACTTACATAATTT-A-
1 AACTTACATAATTTATAAGTTACATAATTTCAT
* *
92629078 AA--GACCA-AATTCCATAAGTTACATAATTTACAT
1 AACTTA-CATAATT-TATAAGTTACATAATTT-CAT
92629111 AACTTACATAATAATT-TAAAGTT-CA-AATTTCAT
1 AACTTACATAAT--TTAT-AAGTTACATAATTTCAT
** * * *
92629144 AACTTACATAATACATAACTTGCATAA-TACAT
1 AACTTACATAATTTATAAGTTACATAATTTCAT
92629176 AACTTACATAATTTA
1 AACTTACATAATTTA
92629191 AAGATCAAAA
Statistics
Matches: 180, Mismatches: 33, Indels: 51
0.68 0.12 0.19
Matches are distributed among these distances:
29 8 0.04
30 54 0.30
31 13 0.07
32 24 0.13
33 41 0.23
34 25 0.14
35 9 0.05
36 5 0.03
37 1 0.01
ACGTcount: A:0.45, C:0.15, G:0.04, T:0.36
Consensus pattern (33 bp):
AACTTACATAATTTATAAGTTACATAATTTCAT
Found at i:92629040 original size:64 final size:63
Alignment explanation
Indices: 92628920--92629072 Score: 202
Period size: 64 Copynumber: 2.4 Consensus size: 63
92628910 GTTCACCAGC
* * *
92628920 AACTCACATAATTTACATAATTTACATATACATAACTTACATAATTTAAAGTTCAAATTTCAT
1 AACTCACATAATTTACATAACTTACATAGACATAACTTACATAATTTAAAGATCAAATTTCAT
* * *
92628983 AACTGACATAATTTACTTAACTTACATAAGACATGACTTACATAATTTAAAGATCAAATTTCAT
1 AACTCACATAATTTACATAACTTACAT-AGACATAACTTACATAATTTAAAGATCAAATTTCAT
* * *
92629047 AACTTATATGA--TACATAACTTACATA
1 AACTCACATAATTTACATAACTTACATA
92629073 ATTTAAAGAC
Statistics
Matches: 79, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
61 1 0.01
62 13 0.16
63 24 0.30
64 41 0.52
ACGTcount: A:0.44, C:0.16, G:0.04, T:0.36
Consensus pattern (63 bp):
AACTCACATAATTTACATAACTTACATAGACATAACTTACATAATTTAAAGATCAAATTTCAT
Found at i:92629047 original size:21 final size:21
Alignment explanation
Indices: 92629020--92629094 Score: 69
Period size: 21 Copynumber: 3.4 Consensus size: 21
92629010 AAGACATGAC
92629020 TTACATAATTTAAAGATCAAA
1 TTACATAATTTAAAGATCAAA
* * *
92629041 TTTCATAACTTATATGATACATAA
1 TTACATAATTTA-AAGAT-CA-AA
*
92629065 CTTACATAATTTAAAGACCAAA
1 -TTACATAATTTAAAGATCAAA
*
92629087 TTCCATAA
1 TTACATAA
92629095 GTTACATAAT
Statistics
Matches: 42, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
21 17 0.40
22 6 0.14
23 4 0.10
24 5 0.12
25 10 0.24
ACGTcount: A:0.47, C:0.15, G:0.04, T:0.35
Consensus pattern (21 bp):
TTACATAATTTAAAGATCAAA
Found at i:92629068 original size:46 final size:46
Alignment explanation
Indices: 92629000--92629171 Score: 218
Period size: 46 Copynumber: 3.6 Consensus size: 46
92628990 ATAATTTACT
* *
92629000 TAACTTACATAAGACATGACTTACATAATTTAAAGATCAAATTTCA
1 TAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTTCA
* * * *
92629046 TAACTTATATGATACATAACTTACATAATTTAAAGACCAAATTCCA
1 TAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTTCA
* *
92629092 TAAGTTACATAATTTACATAACTTACATAATAATTTAAAGTTCAAATTTCA
1 TAACTTACATAA--TACATAACTTAC---ATAATTTAAAGATCAAATTTCA
*
92629143 TAACTTACATAATACATAACTTGCATAAT
1 TAACTTACATAATACATAACTTACATAAT
92629172 ACATAACTTA
Statistics
Matches: 107, Mismatches: 14, Indels: 10
0.82 0.11 0.08
Matches are distributed among these distances:
46 54 0.50
48 12 0.11
49 11 0.10
51 30 0.28
ACGTcount: A:0.45, C:0.15, G:0.05, T:0.35
Consensus pattern (46 bp):
TAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTTCA
Found at i:92629076 original size:97 final size:99
Alignment explanation
Indices: 92628950--92629190 Score: 236
Period size: 97 Copynumber: 2.5 Consensus size: 99
92628940 TTTACATATA
** * *
92628950 CATAACTTACATAATTTA-AAGTT-CA-AATTTCATAACTGACATAATTTACTTAACTTACATAA
1 CATAACTTACATAATACATAACTTACATAATTTCATAACTGACATAATTTACATAACTTACATAA
*
92629012 -GACATGACTTAC-ATAATTTAAAGATCAAATTT
66 TGACATAACTTACAATAATTTAAAGATCAAATTT
* * * *
92629044 CATAACTTATATGATACATAACTTACATAATTT-A-AA--GACCA-AA-TTCCATAAGTTACATA
1 CATAACTTACATAATACATAACTTACATAATTTCATAACTGA-CATAATTTACATAACTTACATA
* *
92629103 ATTTACATAACTTACATAATAATTTAAAGTTCAAATTT
65 A-TGACATAACTTAC--AATAATTTAAAGATCAAATTT
* * *
92629141 CATAACTTACATAATACATAACTTGCATAA-TACATAACTTACATAATTTA
1 CATAACTTACATAATACATAACTTACATAATTTCATAACTGACATAATTTA
92629191 AAGATCAAAA
Statistics
Matches: 115, Mismatches: 17, Indels: 23
0.74 0.11 0.15
Matches are distributed among these distances:
92 14 0.12
93 4 0.03
94 26 0.23
95 6 0.05
96 4 0.03
97 52 0.45
98 2 0.02
99 2 0.02
100 3 0.03
101 2 0.02
ACGTcount: A:0.45, C:0.15, G:0.04, T:0.36
Consensus pattern (99 bp):
CATAACTTACATAATACATAACTTACATAATTTCATAACTGACATAATTTACATAACTTACATAA
TGACATAACTTACAATAATTTAAAGATCAAATTT
Found at i:92629108 original size:9 final size:9
Alignment explanation
Indices: 92629090--92629245 Score: 64
Period size: 9 Copynumber: 18.0 Consensus size: 9
92629080 GACCAAATTC
*
92629090 CATAAGTTA
1 CATAACTTA
*
92629099 CATAATTTA
1 CATAACTTA
92629108 CATAACTTA
1 CATAACTTA
*
92629117 CATAA-TAA
1 CATAACTTA
** *
92629125 TTTAAAGTT-
1 CAT-AACTTA
*
92629134 CA-AA-TTT
1 CATAACTTA
92629141 CATAACTTA
1 CATAACTTA
92629150 CATAA--TA
1 CATAACTTA
*
92629157 CATAACTTG
1 CATAACTTA
92629166 CATAA--TA
1 CATAACTTA
92629173 CATAACTTA
1 CATAACTTA
*
92629182 CATAATTTAAA
1 CATAACTT--A
* *
92629193 GATCAAAATT-
1 CAT--AACTTA
* *
92629203 CATGATTTA
1 CATAACTTA
92629212 CATAACTTA
1 CATAACTTA
92629221 CATAA--TA
1 CATAACTTA
*
92629228 CATGACTTA
1 CATAACTTA
92629237 CATAACTTA
1 CATAACTTA
92629246 ATTATACTTA
Statistics
Matches: 110, Mismatches: 21, Indels: 32
0.67 0.13 0.20
Matches are distributed among these distances:
6 2 0.02
7 23 0.21
8 8 0.07
9 67 0.61
10 3 0.03
11 3 0.03
13 4 0.04
ACGTcount: A:0.46, C:0.15, G:0.04, T:0.35
Consensus pattern (9 bp):
CATAACTTA
Found at i:92629140 original size:110 final size:112
Alignment explanation
Indices: 92628925--92629225 Score: 303
Period size: 110 Copynumber: 2.7 Consensus size: 112
92628915 CCAGCAACTC
* ** *
92628925 ACATAATTTACATAATTTACATATACATAACTTACATAATTTAAAGTTCAAATTTCATAACTGAC
1 ACATAATTT-CATAACTTACATATACATAACTTACATAATTTAAAGACCAAA-TTCATAACTTAC
* * *
92628990 ATAATTTACTTAACTTACATAAGACATGACTTACATAATTT-A-AAGAT
64 ATAATTTACATAACTTACATAAGACATAACTTACATAATTTCATAACAT
* *
92629037 -CA-AATTTCATAACTTATATGATACATAACTTACATAATTTAAAGACCAAATTCCATAAGTTAC
1 ACATAATTTCATAACTTACAT-ATACATAACTTACATAATTTAAAGACCAAATT-CATAACTTAC
* * *
92629100 ATAATTTACATAACTTACATAATA-ATTTAAAGTT-CA-AATTTCATAACTT
64 ATAATTTACATAACTTACATAAGACA--T-AACTTACATAATTTCATAACAT
* * * * *
92629149 ACATAA-TACATAACTTGCATAATACATAACTTACATAATTTAAAGATCAAAATTCATGATTTAC
1 ACATAATTTCATAACTTACAT-ATACATAACTTACATAATTTAAAGA-CCAAATTCATAACTTAC
*
92629213 ATAACTTACATAA
64 ATAATTTACATAA
92629226 TACATGACTT
Statistics
Matches: 159, Mismatches: 20, Indels: 19
0.80 0.10 0.10
Matches are distributed among these distances:
109 13 0.08
110 68 0.43
111 6 0.04
112 6 0.04
113 58 0.36
114 8 0.05
ACGTcount: A:0.46, C:0.15, G:0.04, T:0.36
Consensus pattern (112 bp):
ACATAATTTCATAACTTACATATACATAACTTACATAATTTAAAGACCAAATTCATAACTTACAT
AATTTACATAACTTACATAAGACATAACTTACATAATTTCATAACAT
Found at i:92629162 original size:16 final size:16
Alignment explanation
Indices: 92629141--92629187 Score: 85
Period size: 16 Copynumber: 2.9 Consensus size: 16
92629131 GTTCAAATTT
92629141 CATAACTTACATAATA
1 CATAACTTACATAATA
*
92629157 CATAACTTGCATAATA
1 CATAACTTACATAATA
92629173 CATAACTTACATAAT
1 CATAACTTACATAAT
92629188 TTAAAGATCA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 29 1.00
ACGTcount: A:0.47, C:0.19, G:0.02, T:0.32
Consensus pattern (16 bp):
CATAACTTACATAATA
Found at i:92629235 original size:16 final size:16
Alignment explanation
Indices: 92629210--92629241 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
92629200 ATTCATGATT
92629210 TACATAACTTACATAA
1 TACATAACTTACATAA
*
92629226 TACATGACTTACATAA
1 TACATAACTTACATAA
92629242 CTTAATTATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.19, G:0.03, T:0.31
Consensus pattern (16 bp):
TACATAACTTACATAA
Found at i:92631272 original size:48 final size:48
Alignment explanation
Indices: 92631201--92631297 Score: 158
Period size: 48 Copynumber: 2.0 Consensus size: 48
92631191 CATGAGAATT
*
92631201 CGGCGTGAACTTTATACTAAAGTACTTCCAAATGGGAAATGTCTGTTA
1 CGGCGTGAACTTCATACTAAAGTACTTCCAAATGGGAAATGTCTGTTA
* * *
92631249 CGGCGTGATCTTCATACTGAAGTACTTCCGAATGGGAAATGTCTGTTA
1 CGGCGTGAACTTCATACTAAAGTACTTCCAAATGGGAAATGTCTGTTA
92631297 C
1 C
92631298 CGCCTTCTAT
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 45 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.31
Consensus pattern (48 bp):
CGGCGTGAACTTCATACTAAAGTACTTCCAAATGGGAAATGTCTGTTA
Found at i:92635516 original size:8 final size:8
Alignment explanation
Indices: 92635503--92635532 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
92635493 AGATCGGCAC
92635503 AAGCCGAA
1 AAGCCGAA
92635511 AAGCCGAA
1 AAGCCGAA
*
92635519 ATGCCGAA
1 AAGCCGAA
92635527 AAGCCG
1 AAGCCG
92635533 GTATTTTGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.43, C:0.27, G:0.27, T:0.03
Consensus pattern (8 bp):
AAGCCGAA
Found at i:92636001 original size:32 final size:27
Alignment explanation
Indices: 92635922--92636007 Score: 113
Period size: 27 Copynumber: 3.2 Consensus size: 27
92635912 GGAAGCGTCA
*
92635922 TGGTGGCTATGCCACA-ATTATCTGATC
1 TGGTGGCTCTGCCACATA-TATCTGATC
*
92635949 TGGTGGCTCTGCCACATATATCTGTTC
1 TGGTGGCTCTGCCACATATATCTGATC
*
92635976 TGGTGGCTCTGCCACA-ATATCTATATC
1 TGGTGGCTCTGCCACATATATCT-GATC
92636003 TGGTG
1 TGGTG
92636008 ACTTCGTCAC
Statistics
Matches: 53, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
26 6 0.11
27 46 0.87
28 1 0.02
ACGTcount: A:0.19, C:0.23, G:0.23, T:0.35
Consensus pattern (27 bp):
TGGTGGCTCTGCCACATATATCTGATC
Found at i:92638180 original size:3 final size:3
Alignment explanation
Indices: 92638172--92638212 Score: 64
Period size: 3 Copynumber: 13.7 Consensus size: 3
92638162 CAGACCTCCT
* *
92638172 TTA TTA TTA TTA TCA TTA TTA TTA TTC TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
92638213 TTCCTGTGAT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.29, C:0.05, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:92638976 original size:49 final size:49
Alignment explanation
Indices: 92638916--92639047 Score: 148
Period size: 49 Copynumber: 2.8 Consensus size: 49
92638906 TCGTGAAAAT
* *
92638916 TAAGTTTTGAGTCTCGTACCTAATTTCAAATTCAATTACAAAAGTTTTG
1 TAAGTTCTGAGTCTCGTACCTAATTTCAAACTCAATTACAAAAGTTTTG
* **
92638965 TAAGTTCTGAGTCTTGTATTTAATTTCAAACTCAATTACAAAA-----G
1 TAAGTTCTGAGTCTCGTACCTAATTTCAAACTCAATTACAAAAGTTTTG
* * **
92639009 TAAGTTTTGAGTCGCCAACCTAATTTCAAACTCAATTAC
1 TAAGTTCTGAGTCTCGTACCTAATTTCAAACTCAATTAC
92639048 TTATTCTCGA
Statistics
Matches: 71, Mismatches: 12, Indels: 5
0.81 0.14 0.06
Matches are distributed among these distances:
44 33 0.46
49 38 0.54
ACGTcount: A:0.34, C:0.17, G:0.11, T:0.38
Consensus pattern (49 bp):
TAAGTTCTGAGTCTCGTACCTAATTTCAAACTCAATTACAAAAGTTTTG
Found at i:92656293 original size:53 final size:52
Alignment explanation
Indices: 92656227--92656377 Score: 171
Period size: 52 Copynumber: 2.9 Consensus size: 52
92656217 CTTCATACTG
*
92656227 ATGCCATAGCCCAGATATGGTCTTATACGGAATCACATTATCACATCACACCA
1 ATGCCATAGCCCAGCTATGGTCTTATACGGAATCACA-TATCACATCACACCA
* * *** *
92656280 ATGCCATAGCCCAGCTATGGTATTATACGGGAAT-ACGA-ATCATATTGTACCG
1 ATGCCATAGCCCAGCTATGGTCTTATAC-GGAATCAC-ATATCACATCACACCA
* * *
92656332 ATGCCATAGCCCGGCTATGGTCTTATACGGAAGCATATATCACATC
1 ATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATATCACATC
92656378 TTTTCCATCT
Statistics
Matches: 81, Mismatches: 13, Indels: 9
0.79 0.13 0.09
Matches are distributed among these distances:
51 5 0.06
52 42 0.52
53 28 0.35
54 6 0.07
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (52 bp):
ATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATATCACATCACACCA
Found at i:92656436 original size:20 final size:20
Alignment explanation
Indices: 92656408--92656476 Score: 102
Period size: 20 Copynumber: 3.5 Consensus size: 20
92656398 AATAATGTGT
*
92656408 CACACGGGCATGTTTCAGGC
1 CACACGGGCATGTTCCAGGC
* *
92656428 CACATGGGCATGTCCCAGGC
1 CACACGGGCATGTTCCAGGC
*
92656448 CACATGGGCATGTTCCAGGC
1 CACACGGGCATGTTCCAGGC
92656468 CACACGGGC
1 CACACGGGC
92656477 GTGTGCCCCT
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.20, C:0.33, G:0.30, T:0.16
Consensus pattern (20 bp):
CACACGGGCATGTTCCAGGC
Found at i:92657011 original size:10 final size:10
Alignment explanation
Indices: 92656998--92657027 Score: 51
Period size: 11 Copynumber: 2.9 Consensus size: 10
92656988 AGTGTAGAGA
92656998 AAAACTAAAG
1 AAAACTAAAG
92657008 AAAACCTAAAG
1 AAAA-CTAAAG
92657019 AAAACTAAA
1 AAAACTAAA
92657028 CCTAAAACTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.70, C:0.13, G:0.07, T:0.10
Consensus pattern (10 bp):
AAAACTAAAG
Found at i:92659855 original size:24 final size:24
Alignment explanation
Indices: 92659821--92659872 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
92659811 TTTCTAGAAG
* * *
92659821 ATTTAGTATTTATGAGTATAATAT
1 ATTTAGCATTTATGAGCATAATAC
*
92659845 ATTTAGCATTTATTAGCATAATAC
1 ATTTAGCATTTATGAGCATAATAC
92659869 ATTT
1 ATTT
92659873 GACTTTGATT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.37, C:0.06, G:0.10, T:0.48
Consensus pattern (24 bp):
ATTTAGCATTTATGAGCATAATAC
Found at i:92663834 original size:19 final size:19
Alignment explanation
Indices: 92663810--92663847 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
92663800 GATATGATAC
92663810 TAAAAT-TATTAAAAAAAAT
1 TAAAATATA-TAAAAAAAAT
92663829 TAAAATATATAAAAAAAAT
1 TAAAATATATAAAAAAAAT
92663848 CAGGGAAACA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 16 0.89
20 2 0.11
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (19 bp):
TAAAATATATAAAAAAAAT
Found at i:92664136 original size:22 final size:21
Alignment explanation
Indices: 92664101--92664176 Score: 59
Period size: 22 Copynumber: 3.7 Consensus size: 21
92664091 AAAAGGTATC
* * *
92664101 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCCAAGAT
92664122 TACAAAATCATATCTTCCAAGAT
1 TAC-AAATCATATC-TCCAAGAT
* *
92664145 TGCATATCATATCT--AAGAT
1 TACAAATCATATCTCCAAGAT
*
92664164 TGC-AATCATATCT
1 TACAAATCATATCT
92664177 AAGATTGTAT
Statistics
Matches: 47, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
18 9 0.19
19 8 0.17
21 4 0.09
22 17 0.36
23 9 0.19
ACGTcount: A:0.41, C:0.18, G:0.07, T:0.34
Consensus pattern (21 bp):
TACAAATCATATCTCCAAGAT
Found at i:92664173 original size:18 final size:19
Alignment explanation
Indices: 92664140--92664208 Score: 108
Period size: 18 Copynumber: 3.8 Consensus size: 19
92664130 CATATCTTCC
92664140 AAGATTGCATATCATATCT
1 AAGATTGCATATCATATCT
92664159 AAGATTGCA-ATCATATCT
1 AAGATTGCATATCATATCT
*
92664177 AAGATTG--TATCGTATCT
1 AAGATTGCATATCATATCT
92664194 AAGATTGCATATCAT
1 AAGATTGCATATCAT
92664209 TGAAGATTAT
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
17 15 0.33
18 16 0.36
19 14 0.31
ACGTcount: A:0.36, C:0.14, G:0.13, T:0.36
Consensus pattern (19 bp):
AAGATTGCATATCATATCT
Found at i:92664622 original size:45 final size:45
Alignment explanation
Indices: 92664573--92664669 Score: 158
Period size: 45 Copynumber: 2.2 Consensus size: 45
92664563 ACTATCTTTG
*
92664573 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTTCA
1 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCA
* **
92664618 ATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTCATCTTGG
1 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCA
92664663 ATCTGCT
1 ATCTGCT
92664670 TCGATGTAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 48 1.00
ACGTcount: A:0.25, C:0.30, G:0.15, T:0.30
Consensus pattern (45 bp):
ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCA
Found at i:92664880 original size:78 final size:78
Alignment explanation
Indices: 92664683--92664976 Score: 385
Period size: 78 Copynumber: 3.8 Consensus size: 78
92664673 ATGTAAACAC
* * *
92664683 ATGAAGGTCAGATCTACTATGTCTTTGATCTGCTCCCCGTCTAATACAAAAATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
*
92664748 TGGATCTACTTCA
66 TGGATCTGCTTCA
* * *
92664761 AT-AAAGTCCA-ATCTGTTATGTCTTTGATCTGCTCCCCGTCTATTACAGAGATGCCAAATCATC
1 ATGAAGGT-CAGATCTGCTATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
92664824 TTGGATCTGCTTCA
65 TTGGATCTGCTTCA
* *
92664838 ATGAAGGTCAGATCTGCTGTGTCTTTGATCTGCTCCTCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
* *
92664903 TAGATCTGTTTCA
66 TGGATCTGCTTCA
* * * * * * * **
92664916 CTAAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCATCAAATATGGAGATGCCAAATC
1 ATGAAGGTCAGATCTGCTATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
92664977 TGTTTCTTTG
Statistics
Matches: 188, Mismatches: 25, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
77 69 0.37
78 119 0.63
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:92666231 original size:16 final size:16
Alignment explanation
Indices: 92666210--92666240 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
92666200 CCTCTCCATT
92666210 TTTTTATTTTTATTTC
1 TTTTTATTTTTATTTC
92666226 TTTTTATTTTTATTT
1 TTTTTATTTTTATTT
92666241 TTTCGAAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.13, C:0.03, G:0.00, T:0.84
Consensus pattern (16 bp):
TTTTTATTTTTATTTC
Found at i:92676290 original size:17 final size:18
Alignment explanation
Indices: 92676268--92676301 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
92676258 GATATGATAC
92676268 TAAAAT-TATAAAAAAAT
1 TAAAATATATAAAAAAAT
92676285 TAAAATATATAAAAAAA
1 TAAAATATATAAAAAAA
92676302 ATCAGGGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (18 bp):
TAAAATATATAAAAAAAT
Found at i:92676591 original size:22 final size:21
Alignment explanation
Indices: 92676556--92676631 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
92676546 AAAAGGTATC
* *
92676556 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
92676577 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
92676600 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
92676619 TGC-AATCATATCT
1 TACAAATCATATCT
92676632 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:92676648 original size:35 final size:37
Alignment explanation
Indices: 92676585--92676682 Score: 150
Period size: 35 Copynumber: 2.7 Consensus size: 37
92676575 ATTACAAAAT
92676585 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
92676621 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
92676656 CATATCATATCTAAGATTGCATATCAT
1 CATATCATATCTAAGATTG-ATATCAT
92676683 TGAAGATTAT
Statistics
Matches: 57, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
35 22 0.39
36 19 0.33
37 10 0.18
38 6 0.11
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:92676690 original size:17 final size:19
Alignment explanation
Indices: 92676592--92676682 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
92676582 AATCATATCT
92676592 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
92676611 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
92676629 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
92676646 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
92676665 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
92676683 TGAAGATTAT
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.23
18 16 0.23
19 37 0.54
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:92694483 original size:27 final size:27
Alignment explanation
Indices: 92694428--92694484 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
92694418 TGGTATTCAT
* * * *
92694428 TTGGTGAACTCCTAGTTCGCTGAAGCA
1 TTGGTGAACACCTAGTTCACCGAAACA
*
92694455 TTGGTGAACACCTTGTTCACCGAAACA
1 TTGGTGAACACCTAGTTCACCGAAACA
92694482 TTG
1 TTG
92694485 ACGAATCTTC
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (27 bp):
TTGGTGAACACCTAGTTCACCGAAACA
Found at i:92696211 original size:14 final size:14
Alignment explanation
Indices: 92696172--92696216 Score: 56
Period size: 14 Copynumber: 3.1 Consensus size: 14
92696162 AAATTGATAA
92696172 TATTAATGATTAAT
1 TATTAATGATTAAT
*
92696186 TA-TAATAAATTAAT
1 TATTAAT-GATTAAT
92696200 TATTAATGATTAGAT
1 TATTAATGATTA-AT
92696215 TA
1 TA
92696217 ACTATTAGTA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
13 4 0.15
14 14 0.54
15 8 0.31
ACGTcount: A:0.47, C:0.00, G:0.07, T:0.47
Consensus pattern (14 bp):
TATTAATGATTAAT
Found at i:92703985 original size:15 final size:16
Alignment explanation
Indices: 92703965--92703997 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
92703955 ATTAAAACTT
*
92703965 TGAAGA-ATTTTTAAA
1 TGAAGACATTTTAAAA
92703980 TGAAGACATTTTAAAA
1 TGAAGACATTTTAAAA
92703996 TG
1 TG
92703998 CATCATTTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.45, C:0.03, G:0.15, T:0.36
Consensus pattern (16 bp):
TGAAGACATTTTAAAA
Found at i:92709422 original size:194 final size:193
Alignment explanation
Indices: 92709094--92709480 Score: 738
Period size: 194 Copynumber: 2.0 Consensus size: 193
92709084 TTTCTTGTGG
92709094 GAATGTACTCTAGCGATATATTTCTGTTTCAATTTTTCTTTGATAAAATGCTTATCTATCTTGAT
1 GAATGTACTCTAGCGATATATTTCTGTTTCAATTTTTCTTTGATAAAATGCTTATCTATCTTGAT
92709159 GTGCTTGGTTCAATCATGATGTGCAAAGCTTTTTGCTATATTGAGAATCACATGATTGTCACAGC
66 GTGCTTGGTTCAATCATGATGTGCAAAGCTTTTTGCTATATTGAGAATCACATGATTGTCACAGC
92709224 ACACTTGTAGAGATAGTGGTTGAAACCTGTAGCTCAATTTACAATCTTTTGTAGCCAAATTCC
131 ACACTTGTAGAGATAGTGGTTGAAACCTGTAGCTCAATTTACAATCTTTTGTAGCCAAATTCC
* *
92709287 GAATGTACTCTAGTGATATATTTCTGTTTCAGTTTTTTCTTTGATAAAATGCTTATCTATCTTGA
1 GAATGTACTCTAGCGATATATTTCTGTTTCA-ATTTTTCTTTGATAAAATGCTTATCTATCTTGA
*
92709352 TGTGCTTGGTTCAATCATGATGTGCAAAGCTTTTTGCTATATTGAGAATCACATGATTTTCACAG
65 TGTGCTTGGTTCAATCATGATGTGCAAAGCTTTTTGCTATATTGAGAATCACATGATTGTCACAG
92709417 CACACTTGTAGAGATAGTGGTTGAAACCTGTAGCTCAATTTACAATCTTTTGTAGCCAAATTCC
130 CACACTTGTAGAGATAGTGGTTGAAACCTGTAGCTCAATTTACAATCTTTTGTAGCCAAATTCC
92709481 TTCACAGATC
Statistics
Matches: 190, Mismatches: 3, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
193 30 0.16
194 160 0.84
ACGTcount: A:0.27, C:0.16, G:0.17, T:0.40
Consensus pattern (193 bp):
GAATGTACTCTAGCGATATATTTCTGTTTCAATTTTTCTTTGATAAAATGCTTATCTATCTTGAT
GTGCTTGGTTCAATCATGATGTGCAAAGCTTTTTGCTATATTGAGAATCACATGATTGTCACAGC
ACACTTGTAGAGATAGTGGTTGAAACCTGTAGCTCAATTTACAATCTTTTGTAGCCAAATTCC
Found at i:92711729 original size:31 final size:32
Alignment explanation
Indices: 92711688--92711747 Score: 95
Period size: 31 Copynumber: 1.9 Consensus size: 32
92711678 AATATTACTA
92711688 TAGTGACAGCAATGAAGGCTGAAACAGGACTG
1 TAGTGACAGCAATGAAGGCTGAAACAGGACTG
* *
92711720 TAGTG-CAGCAATGAAGGTTGAAATAGGA
1 TAGTGACAGCAATGAAGGCTGAAACAGGA
92711748 GGGAAAAAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
31 21 0.81
32 5 0.19
ACGTcount: A:0.38, C:0.12, G:0.32, T:0.18
Consensus pattern (32 bp):
TAGTGACAGCAATGAAGGCTGAAACAGGACTG
Found at i:92714225 original size:20 final size:20
Alignment explanation
Indices: 92714200--92714238 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
92714190 TGTGAAGTTT
*
92714200 ATTGATGAGTATTTTATATA
1 ATTGATGAATATTTTATATA
92714220 ATTGATGAATATTTTATAT
1 ATTGATGAATATTTTATAT
92714239 TAGAAATTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.36, C:0.00, G:0.13, T:0.51
Consensus pattern (20 bp):
ATTGATGAATATTTTATATA
Found at i:92720675 original size:21 final size:22
Alignment explanation
Indices: 92720642--92720682 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
92720632 TTCATTTATG
*
92720642 TTTCATTGGCACATA-ATCATA
1 TTTCATTGCCACATACATCATA
*
92720663 TTTCATTTCCACATACATCA
1 TTTCATTGCCACATACATCA
92720683 CAATACATTC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.32, C:0.24, G:0.05, T:0.39
Consensus pattern (22 bp):
TTTCATTGCCACATACATCATA
Found at i:92721130 original size:28 final size:27
Alignment explanation
Indices: 92721094--92721163 Score: 95
Period size: 28 Copynumber: 2.6 Consensus size: 27
92721084 CATTCGATAT
*
92721094 TTCGCACACTAAGTGTCGTTATCAATA
1 TTCGCACACTAAGTGTCATTATCAATA
*
92721121 TCTCGCACACTAAGTGTCATTCTCAATA
1 T-TCGCACACTAAGTGTCATTATCAATA
* *
92721149 TTCGTACACTGAGTG
1 TTCGCACACTAAGTG
92721164 CCATATTTGA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
27 13 0.34
28 25 0.66
ACGTcount: A:0.27, C:0.24, G:0.16, T:0.33
Consensus pattern (27 bp):
TTCGCACACTAAGTGTCATTATCAATA
Found at i:92723462 original size:12 final size:12
Alignment explanation
Indices: 92723447--92723479 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
92723437 AATAAATAAA
92723447 TAAATAAAATAT
1 TAAATAAAATAT
*
92723459 TAAATGAAATAT
1 TAAATAAAATAT
92723471 TAAATAAAA
1 TAAATAAAA
92723480 AAGTTTTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (12 bp):
TAAATAAAATAT
Found at i:92727368 original size:17 final size:17
Alignment explanation
Indices: 92727346--92727380 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
92727336 ACTAAACCGA
92727346 CCACTAACTCCATCACC
1 CCACTAACTCCATCACC
92727363 CCACTAACTCCATCACC
1 CCACTAACTCCATCACC
92727380 C
1 C
92727381 TTTGCCACTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.29, C:0.54, G:0.00, T:0.17
Consensus pattern (17 bp):
CCACTAACTCCATCACC
Found at i:92727389 original size:39 final size:39
Alignment explanation
Indices: 92727346--92727420 Score: 114
Period size: 39 Copynumber: 1.9 Consensus size: 39
92727336 ACTAAACCGA
*
92727346 CCACTAACTCCATCACCCCACTAACTCCATCACCCTTTG
1 CCACTAACTCCATCACCCCACTAACCCCATCACCCTTTG
* * *
92727385 CCACTAATTCCATCACCCCCCTAACCCCATTACCCT
1 CCACTAACTCCATCACCCCACTAACCCCATCACCCT
92727421 ACTTGCCTAG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 32 1.00
ACGTcount: A:0.25, C:0.51, G:0.01, T:0.23
Consensus pattern (39 bp):
CCACTAACTCCATCACCCCACTAACCCCATCACCCTTTG
Found at i:92727965 original size:13 final size:12
Alignment explanation
Indices: 92727947--92727980 Score: 50
Period size: 13 Copynumber: 2.7 Consensus size: 12
92727937 TTTTTAAATA
92727947 TTATATTATTATT
1 TTATATTATTA-T
92727960 TTATATATATTAT
1 TTATAT-TATTAT
92727973 TTATATTA
1 TTATATTA
92727981 AGCTATTTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
12 2 0.10
13 13 0.65
14 5 0.25
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (12 bp):
TTATATTATTAT
Found at i:92727969 original size:22 final size:21
Alignment explanation
Indices: 92727935--92727976 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
92727925 TTTTATGAAC
*
92727935 ATTTTTTAAATATTATATTATT
1 ATTTTATAAATATTAT-TTATT
*
92727957 ATTTTATATATATTATTTAT
1 ATTTTATAAATATTATTTAT
92727977 ATTAAGCTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (21 bp):
ATTTTATAAATATTATTTATT
Found at i:92732592 original size:47 final size:47
Alignment explanation
Indices: 92732528--92732638 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
92732518 GACATTGAGT
*
92732528 CGATG-AGACACTATGTGT-CGACTACTGTTAAAGTTCCGGATTTGTTC
1 CGATGAAG-CACTATGTGTACGA-TAATGTTAAAGTTCCGGATTTGTTC
* * *
92732575 CGATGAAGTACTTTGTGTACTATAATGTTAAAGTTCCGGATTTGTTC
1 CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTGTTC
92732622 CGATGAAGCACTATGTG
1 CGATGAAGCACTATGTG
92732639 CTTATCCCGG
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
47 52 0.93
48 4 0.07
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.35
Consensus pattern (47 bp):
CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTGTTC
Found at i:92739822 original size:47 final size:47
Alignment explanation
Indices: 92739758--92739868 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
92739748 GACATTGAGT
*
92739758 CGATG-AGACACTATGTGT-CGACTACTGTTAAAGTTCCGGATTTGTTC
1 CGATGAAG-CACTATGTGTACGA-TAATGTTAAAGTTCCGGATTTGTTC
* * *
92739805 CGATGAAGTACTTTGTGTACTATAATGTTAAAGTTCCGGATTTGTTC
1 CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTGTTC
92739852 CGATGAAGCACTATGTG
1 CGATGAAGCACTATGTG
92739869 CTTATCCCGG
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
47 52 0.93
48 4 0.07
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.35
Consensus pattern (47 bp):
CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTGTTC
Found at i:92742981 original size:22 final size:21
Alignment explanation
Indices: 92742952--92742993 Score: 75
Period size: 22 Copynumber: 2.0 Consensus size: 21
92742942 AAACCAAAAA
92742952 GAAAAAAAAACAAAAATAAAG
1 GAAAAAAAAACAAAAATAAAG
92742973 GAAAGAAAAAACAAAAATAAA
1 GAAA-AAAAAACAAAAATAAA
92742994 AACAACAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 4 0.20
22 16 0.80
ACGTcount: A:0.81, C:0.05, G:0.10, T:0.05
Consensus pattern (21 bp):
GAAAAAAAAACAAAAATAAAG
Found at i:92743003 original size:22 final size:21
Alignment explanation
Indices: 92742947--92743004 Score: 62
Period size: 22 Copynumber: 2.7 Consensus size: 21
92742937 AAAGGAAACC
92742947 AAAAAGAAAAAAAAACAAAAAT
1 AAAAA-AAAAAAAAACAAAAAT
* *
92742969 AAAGGAAAGAAAAAACAAAAAT
1 AAA-AAAAAAAAAAACAAAAAT
* *
92742991 AAAAACAACAAAAA
1 AAAAAAAAAAAAAA
92743005 GAGATTGTAG
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
21 7 0.24
22 21 0.72
23 1 0.03
ACGTcount: A:0.83, C:0.07, G:0.07, T:0.03
Consensus pattern (21 bp):
AAAAAAAAAAAAAACAAAAAT
Found at i:92743316 original size:41 final size:41
Alignment explanation
Indices: 92743233--92743316 Score: 114
Period size: 41 Copynumber: 2.0 Consensus size: 41
92743223 ACTAAACCGA
* * * *
92743233 CCACTAACTCCATCATCCCACTAACTCCATCACCCTATTTG
1 CCACTAACTCCATCACCCCACTAACCCCATCACCCCACTTG
* *
92743274 CCACTAATTCCATCACCCCACTAACCCCATTACCCCACTTG
1 CCACTAACTCCATCACCCCACTAACCCCATCACCCCACTTG
92743315 CC
1 CC
92743317 TAGGAAAAGA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.26, C:0.48, G:0.02, T:0.24
Consensus pattern (41 bp):
CCACTAACTCCATCACCCCACTAACCCCATCACCCCACTTG
Found at i:92749186 original size:17 final size:17
Alignment explanation
Indices: 92749164--92749206 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
92749154 ATCCTAATAC
*
92749164 AGAAAAGGAAACCAAAA
1 AGAAAAGGAAAACAAAA
*
92749181 AGAAAA-AAAAACAAAA
1 AGAAAAGGAAAACAAAA
92749197 A-AAAAGGAAA
1 AGAAAAGGAAA
92749207 GAAAAAACAA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
15 4 0.18
16 12 0.55
17 6 0.27
ACGTcount: A:0.79, C:0.07, G:0.14, T:0.00
Consensus pattern (17 bp):
AGAAAAGGAAAACAAAA
Found at i:92749203 original size:32 final size:34
Alignment explanation
Indices: 92749166--92749234 Score: 88
Period size: 32 Copynumber: 2.1 Consensus size: 34
92749156 CCTAATACAG
* *
92749166 AAAAGGAAACCAAAAA-GAAAA-AAAAACAAAAA
1 AAAAGGAAACAAAAAACAAAAACAAAAACAAAAA
* *
92749198 AAAAGGAAAGAAAAAACAAAAACAAAAACAACAA
1 AAAAGGAAACAAAAAACAAAAACAAAAACAAAAA
92749232 AAA
1 AAA
92749235 GAGATTGCAG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
32 14 0.45
33 4 0.13
34 13 0.42
ACGTcount: A:0.81, C:0.10, G:0.09, T:0.00
Consensus pattern (34 bp):
AAAAGGAAACAAAAAACAAAAACAAAAACAAAAA
Found at i:92749211 original size:22 final size:20
Alignment explanation
Indices: 92749177--92749224 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 20
92749167 AAAGGAAACC
92749177 AAAAAGAAAAAAAAACAAAA
1 AAAAAGAAAAAAAAACAAAA
92749197 AAAAAGGAAAGAAAAAACAAAA
1 AAAAA-GAAA-AAAAAACAAAA
92749219 ACAAAA
1 A-AAAA
92749225 ACAACAAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
20 5 0.20
21 4 0.16
22 12 0.48
23 4 0.16
ACGTcount: A:0.85, C:0.06, G:0.08, T:0.00
Consensus pattern (20 bp):
AAAAAGAAAAAAAAACAAAA
Found at i:92749233 original size:22 final size:21
Alignment explanation
Indices: 92749176--92749234 Score: 57
Period size: 22 Copynumber: 2.7 Consensus size: 21
92749166 AAAAGGAAAC
92749176 CAAAAAGAAAAAAAAACAAAAA
1 CAAAAA-AAAAAAAAACAAAAA
*
92749198 -AAAAGGAAAGAAAAAACAAAAA
1 CAAAA--AAAAAAAAAACAAAAA
* *
92749220 CAAAAACAACAAAAA
1 CAAAAAAAAAAAAAA
92749235 GAGATTGCAG
Statistics
Matches: 30, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
21 11 0.37
22 14 0.47
23 5 0.17
ACGTcount: A:0.83, C:0.10, G:0.07, T:0.00
Consensus pattern (21 bp):
CAAAAAAAAAAAAAACAAAAA
Found at i:92749235 original size:28 final size:25
Alignment explanation
Indices: 92749176--92749236 Score: 63
Period size: 28 Copynumber: 2.3 Consensus size: 25
92749166 AAAAGGAAAC
92749176 CAAAAAG-AAAAAAAAACAAAAAAA
1 CAAAAAGAAAAAAAAAACAAAAAAA
92749200 -AAGGAAAGAAAAAACAAAAACAAAAACAA
1 CAA--AAAG-AAAAA-AAAAACAAAAA-AA
92749229 CAAAAAGA
1 CAAAAAGA
92749237 GATTGCAGAA
Statistics
Matches: 30, Mismatches: 0, Indels: 11
0.73 0.00 0.27
Matches are distributed among these distances:
23 2 0.07
25 4 0.13
27 5 0.17
28 15 0.50
29 2 0.07
30 2 0.07
ACGTcount: A:0.82, C:0.10, G:0.08, T:0.00
Consensus pattern (25 bp):
CAAAAAGAAAAAAAAAACAAAAAAA
Found at i:92750922 original size:64 final size:64
Alignment explanation
Indices: 92750840--92750966 Score: 200
Period size: 64 Copynumber: 2.0 Consensus size: 64
92750830 CATTCATAGT
* * *
92750840 ACATCTAGTTAGGAGCATTTGATTCATTTTGATCATAGCATCCTAATTATTTGGCATAAGCATC
1 ACATCTAGCTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAACTATTTGGCATAAGCATC
* * *
92750904 ACATCTAGCTCGGAGCATTTGATTTATTTCGATCATAGCATCCTAACTGTTTGGCATAAGCAT
1 ACATCTAGCTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAACTATTTGGCATAAGCAT
92750967 ATATAGATGA
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
64 57 1.00
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.36
Consensus pattern (64 bp):
ACATCTAGCTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAACTATTTGGCATAAGCATC
Found at i:92751308 original size:45 final size:44
Alignment explanation
Indices: 92751259--92751469 Score: 157
Period size: 45 Copynumber: 4.7 Consensus size: 44
92751249 AAGTTACAGA
92751259 TCTTATCTCCATGTATCGGCTATGGAGCAGATCAGAAATGGCGAG
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATCAGAAAT-GCGAG
* * ** *
92751304 TCTTATTTCCATGTATCGGCTATGGAGCAGATTTTAGCCA--CTAG
1 TCTTATCTCCATGTATCGGCTATGGAGCAGA--TCAGAAATGCGAG
* * * * *
92751348 TCTTATCTTCC-TGAAGT-TGC-A-GGAAGCAGACTGAAGAATTAC-AG
1 TCTTATC-TCCATGTA-TCGGCTATGG-AGCAGA-T-CAGAAATGCGAG
* *
92751392 ATCTTATCTCCATGTATCGGCTATGGAGCAGATAAAAAATAGCGAG
1 -TCTTATCTCCATGTATCGGCTATGGAGCAGATCAGAAAT-GCGAG
* *
92751438 TTTTATCTCTATGTATCGGCTATGGAGCAGAT
1 TCTTATCTCCATGTATCGGCTATGGAGCAGAT
92751470 TTTAGCCACC
Statistics
Matches: 131, Mismatches: 20, Indels: 30
0.72 0.11 0.17
Matches are distributed among these distances:
42 3 0.02
43 9 0.07
44 25 0.19
45 79 0.60
46 9 0.07
47 6 0.05
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (44 bp):
TCTTATCTCCATGTATCGGCTATGGAGCAGATCAGAAATGCGAG
Found at i:92751375 original size:134 final size:134
Alignment explanation
Indices: 92751213--92751478 Score: 435
Period size: 134 Copynumber: 2.0 Consensus size: 134
92751203 AAAGATACAG
*
92751213 GTCTTATCTTCCTAAAGTTGTAGGAAGCAGACCGAA-AAGTTACAGATCTTATCTCCATGTATCG
1 GTCTTATCTTCCTAAAGTTGCAGGAAGCAGACCGAAGAA-TTACAGATCTTATCTCCATGTATCG
* * * *
92751277 GCTATGGAGCAGATCAGAAATGGCGAGTCTTATTTCCATGTATCGGCTATGGAGCAGATTTTAGC
65 GCTATGGAGCAGATAAAAAATAGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGC
92751342 CACTA
130 CACTA
* *
92751347 GTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAGAATTACAGATCTTATCTCCATGTATCGG
1 GTCTTATCTTCCTAAAGTTGCAGGAAGCAGACCGAAGAATTACAGATCTTATCTCCATGTATCGG
* *
92751412 CTATGGAGCAGATAAAAAATAGCGAGTTTTATCTCTATGTATCGGCTATGGAGCAGATTTTAGCC
66 CTATGGAGCAGATAAAAAATAGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCC
92751477 AC
131 AC
92751479 CACCCTTATC
Statistics
Matches: 122, Mismatches: 9, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
134 120 0.98
135 2 0.02
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.30
Consensus pattern (134 bp):
GTCTTATCTTCCTAAAGTTGCAGGAAGCAGACCGAAGAATTACAGATCTTATCTCCATGTATCGG
CTATGGAGCAGATAAAAAATAGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCC
ACTA
Found at i:92751623 original size:177 final size:176
Alignment explanation
Indices: 92751346--92751778 Score: 677
Period size: 177 Copynumber: 2.4 Consensus size: 176
92751336 TTTAGCCACT
92751346 AGTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAGAATTACAGATCTTATCTCCATGTATCG
1 AGTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAA-AATTACAGATCTTATCTCCATGTATCG
* * * *
92751411 GCTATGGAGCAGATAAAAAATAGCGAGTTTTATCTCTATGTATCGGCTATGGAGCAGATTTTAGC
65 GCTATGGAGCAGATAAAAAATAGCGAGTCTTATCTCCAGGTATCGACTATGGAGCAGATTTTAGC
* *
92751476 CACCACCCTTATCTCTCTGCGGTAGCAAGAGAGCAGGTTGAAGATAAA
130 CACCACCCTTATCTCTCTGAGGTAGCAA-AGAGCAAGTTGAAGATAAA
* * *
92751524 AGTCTTATCTTCCTGAAGTTGCAGGAAGTAGACTGAAAATTACAGATCTTATCTCTATGTATCAG
1 AGTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTACAGATCTTATCTCCATGTATCGG
* * * *
92751589 CTATAGAGCAGATCAGAAATGGCGAGTCTTATCTCCAGGTATCGACTATGGAGCAGATTTTAGCC
66 CTATGGAGCAGATAAAAAATAGCGAGTCTTATCTCCAGGTATCGACTATGGAGCAGATTTTAGCC
* * *
92751654 ACCAGCCTTATCTCTGTGAGGTAGCAAAGAGCAAGTTGAAGATACA
131 ACCACCCTTATCTCTCTGAGGTAGCAAAGAGCAAGTTGAAGATAAA
* *
92751700 AGTCTTATCTTCATGAAGTTGCAAGAAGCAGACTGAAAATTTACAGATCTTATCTCCATGTATCG
1 AGTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAA-TTACAGATCTTATCTCCATGTATCG
92751765 GCTATGGAGCAGAT
65 GCTATGGAGCAGAT
92751779 TTTAGCCACC
Statistics
Matches: 232, Mismatches: 22, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
176 53 0.23
177 143 0.62
178 36 0.16
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (176 bp):
AGTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTACAGATCTTATCTCCATGTATCGG
CTATGGAGCAGATAAAAAATAGCGAGTCTTATCTCCAGGTATCGACTATGGAGCAGATTTTAGCC
ACCACCCTTATCTCTCTGAGGTAGCAAAGAGCAAGTTGAAGATAAA
Found at i:92751885 original size:133 final size:131
Alignment explanation
Indices: 92751615--92752310 Score: 850
Period size: 133 Copynumber: 5.2 Consensus size: 131
92751605 AAATGGCGAG
* * *
92751615 TCTTATCTCCAGGTATCGACTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTGTGAGGTAGCA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCA
* * *
92751680 A-AGAGCAAGTTGAAGATACAAGTCTTATCTTCATGAAGTTGCAAGAAGCAGACTGAAAATTTAC
66 AGAGAGCAGGTTGAAGATAC-AGTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAA-TTAC
92751744 AGA
129 AGA
* *
92751747 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCGGCCTTATCTTTCTGAGGTAGCA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCA
* *
92751812 AGAGAACAGGTTGAAGATACAAGTCTTATCTTCCTGAAGTTACAGGAAGCAGACTGAAAATTTAC
66 AGAGAGCAGGTTGAAGATAC-AGTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAA-TTAC
92751877 AGA
129 AGA
*
92751880 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAG-CTTCATCTCTCTGAGGTAGT
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTT-ATCTCTCTGAGGTAGC
* * *
92751944 AAGAGAGCAGGATAAAGATACAGATCTTATCTTCCTGAAGTTGTAGGAAGCAGACTGAAGAATTA
65 AAGAGAGCAGGTTGAAGATACAG-TCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAA-AATTA
92752009 CAGA
128 CAGA
* * * *
92752013 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACTAGTCTTATCT-TCTTGAAGTTGC
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTC-TGAGGTAGC
* ** * * * *
92752077 AGGA-AGCAGACTGAAGAATTACAGATCTTATC-TCCATGTA-TCGGCTATGG-AGCAGATTAAA
65 AAGAGAGCAGGTTGAAG-A-TACAG-TCTTATCTTCC-TGAAGT-TGC-A-GGAAGCAGACTGAA
**
92752138 AATGGC-GA
123 AATTACAGA
* * * *
92752146 GTTTTATCCCCATGTATCGGCTATGGAGCAGATTTTAGCCACCGGCCTTATCTCTCTAAGGTAGC
1 -TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGC
* * *
92752211 AAGAGAGCAGGTTGAAGATACTAGTCTTATCTTCTTGAAGTTGCAAGAAGCAAACTGAAAATTAC
65 AAGAGAGCAGGTTGAAGATAC-AGTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTAC
*
92752276 GGA
129 AGA
* *
92752279 TCTTATCTCCATATATCGGTTATGGAGCAGAT
1 TCTTATCTCCATGTATCGGCTATGGAGCAGAT
92752311 CAAAAATGGC
Statistics
Matches: 487, Mismatches: 57, Indels: 40
0.83 0.10 0.07
Matches are distributed among these distances:
131 1 0.00
132 118 0.24
133 256 0.53
134 88 0.18
135 22 0.05
136 2 0.00
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (131 bp):
TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCA
AGAGAGCAGGTTGAAGATACAGTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTACAG
A
Found at i:92752013 original size:45 final size:45
Alignment explanation
Indices: 92751962--92752109 Score: 128
Period size: 45 Copynumber: 3.3 Consensus size: 45
92751952 AGGATAAAGA
92751962 TACAGATCTTATCTTCCTGAAGTTGTAGGAAGCAGACTGAAGAAT
1 TACAGATCTTATCTTCCTGAAGTTGTAGGAAGCAGACTGAAGAAT
* * * ** *
92752007 TACAGATCTTATC-TCCATGTA-TCGGCTATGG-AGCAGATTTTAG--C
1 TACAGATCTTATCTTCC-TGAAGT-TG-TA-GGAAGCAGACTGAAGAAT
* * *
92752051 CACTAG-TCTTATCTTCTTGAAGTTGCAGGAAGCAGACTGAAGAAT
1 TAC-AGATCTTATCTTCCTGAAGTTGTAGGAAGCAGACTGAAGAAT
92752096 TACAGATCTTATCT
1 TACAGATCTTATCT
92752110 CCATGTATCG
Statistics
Matches: 76, Mismatches: 16, Indels: 22
0.67 0.14 0.19
Matches are distributed among these distances:
42 2 0.03
43 10 0.13
44 19 0.25
45 32 0.42
46 11 0.14
47 2 0.03
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32
Consensus pattern (45 bp):
TACAGATCTTATCTTCCTGAAGTTGTAGGAAGCAGACTGAAGAAT
Found at i:92752027 original size:266 final size:265
Alignment explanation
Indices: 92751527--92752310 Score: 950
Period size: 266 Copynumber: 3.0 Consensus size: 265
92751517 AGATAAAAGT
* * * *
92751527 CTTATCTTCCTGAAGTTGCAGGAAGTAGACTGAA-AATTACAGATCTTATCTCTATGTATCAGCT
1 CTTATCTTCTTGAAGTAGCAGGAAGCAGACTGAAGAATTACAGATCTTATCTCCATGTA-CAGCT
* * * * *
92751591 ATA-GAGCAGATCAGAAATGGCGAGTCTTATCTCCAGGTATCGACTATGGAGCAGATTTTAGCCA
65 A-AGGAGCAGATGAAAAATGACGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCA
* *
92751655 CCAGCCTTATCTCTGTGAGGTAGCAA-AGAGCAAGTTGAAGATACA-AGTCTTATCTTCATGAAG
129 CCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATACAGA-TCTTATCTTCATGAAG
92751718 TTGCAAGAAGCAGACTGAAAATTTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATTTTA
193 TTGCAAGAAGCAGACTGAAAA-TTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATTTTA
*
92751783 GCCACCGGC
257 GCCACCAGC
* **
92751792 CTTATCTT-TCTGAGGTAGCAAGAGAA-CAGGTTGAAG-A-TACA-AGTCTTATCTTCC-TG-A-
1 CTTATCTTCT-TGAAGTAGC-AG-GAAGCAGACTGAAGAATTACAGA-TCTTATC-TCCATGTAC
* * *
92751849 AGTTACAGGAAGCAGACTGAAAATTTAC-AGATCTTATCTCCATGTATCGGCTATGGAGCAGATT
61 AGCTA-AGG-AGCAGA-TGAAAAATGACGAG-TCTTATCTCCATGTATCGGCTATGGAGCAGATT
* * *
92751913 TTAGCCACCAG-CTTCATCTCTCTGAGGTAGTAAGAGAGCAGGATAAAGATACAGATCTTATCTT
122 TTAGCCACCAGCCTT-ATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATACAGATCTTATCTT
* * *
92751977 CCTGAAGTTGTAGGAAGCAGACTGAAGAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCA
186 CATGAAGTTGCAAGAAGCAGACTGAA-AATTACAGATCTTATCTCCATGTATCGGCTATGGAGCA
* *
92752042 GATTTTAGCCACTAGT
250 GATTTTAGCCACCAGC
* *
92752058 CTTATCTTCTTGAAGTTGCAGGAAGCAGACTGAAGAATTACAGATCTTATCTCCATGTATCGGCT
1 CTTATCTTCTTGAAGTAGCAGGAAGCAGACTGAAGAATTACAGATCTTATCTCCATGTA-CAGCT
* * * * *
92752123 ATGGAGCAGATTAAAAATGGCGAGTTTTATCCCCATGTATCGGCTATGGAGCAGATTTTAGCCAC
65 AAGGAGCAGATGAAAAATGACGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCAC
* * *
92752188 CGGCCTTATCTCTCTAAGGTAGCAAGAGAGCAGGTTGAAGATACTAG-TCTTATCTTCTTGAAGT
130 CAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATAC-AGATCTTATCTTCATGAAGT
* * * *
92752252 TGCAAGAAGCAAACTGAAAATTACGGATCTTATCTCCATATATCGGTTATGGAGCAGAT
194 TGCAAGAAGCAGACTGAAAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGAT
92752311 CAAAAATGGC
Statistics
Matches: 441, Mismatches: 52, Indels: 51
0.81 0.10 0.09
Matches are distributed among these distances:
262 5 0.01
263 1 0.00
264 16 0.04
265 102 0.23
266 165 0.37
267 132 0.30
268 15 0.03
269 2 0.00
270 3 0.01
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (265 bp):
CTTATCTTCTTGAAGTAGCAGGAAGCAGACTGAAGAATTACAGATCTTATCTCCATGTACAGCTA
AGGAGCAGATGAAAAATGACGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACC
AGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATACAGATCTTATCTTCATGAAGTTG
CAAGAAGCAGACTGAAAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCA
CCAGC
Found at i:92752061 original size:89 final size:89
Alignment explanation
Indices: 92751968--92752134 Score: 316
Period size: 89 Copynumber: 1.9 Consensus size: 89
92751958 AAGATACAGA
*
92751968 TCTTATCTTCCTGAAGTTGTAGGAAGCAGACTGAAGAATTACAGATCTTATCTCCATGTATCGGC
1 TCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAGAATTACAGATCTTATCTCCATGTATCGGC
92752033 TATGGAGCAGATTTTAGCCACTAG
66 TATGGAGCAGATTTTAGCCACTAG
*
92752057 TCTTATCTTCTTGAAGTTGCAGGAAGCAGACTGAAGAATTACAGATCTTATCTCCATGTATCGGC
1 TCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAGAATTACAGATCTTATCTCCATGTATCGGC
92752122 TATGGAGCAGATT
66 TATGGAGCAGATT
92752135 AAAAATGGCG
Statistics
Matches: 76, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
89 76 1.00
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.32
Consensus pattern (89 bp):
TCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAGAATTACAGATCTTATCTCCATGTATCGGC
TATGGAGCAGATTTTAGCCACTAG
Found at i:92752401 original size:177 final size:178
Alignment explanation
Indices: 92752052--92752431 Score: 527
Period size: 177 Copynumber: 2.1 Consensus size: 178
92752042 GATTTTAGCC
* * *
92752052 ACTAGTCTTATCTTCTTGAAGTTGCAGGAAGCAGACTGAAGAATTACAGATCTTATCTCCATGTA
1 ACTAGTCTTATCTTCTTGAAGTTGCAAGAAGCAAACTGAAGAATTACAGATCTTATCTCCATATA
* *
92752117 TCGGCTATGGAGCAGATTAAAAATGGCGAGTTTTATCCCCATGTATCGGCTATGGAGCAGATTTT
66 TCGGCTATGGAGCAGATCAAAAATGGCAAGTTTTATCCCCATGTATCGGCTATGGAGCAGATTTT
* * * *
92752182 AGCCACCGGCCTTATCTCTCTAAGGTAGCAAGAGAGCAGGTTGAAGA-T
131 AGCCACCGACCTCATCTCCCTAAGGTAGCAAGAGAACAGGTTGAA-ATT
*
92752230 ACTAGTCTTATCTTCTTGAAGTTGCAAGAAGCAAACTGAA-AATTACGGATCTTATCTCCATATA
1 ACTAGTCTTATCTTCTTGAAGTTGCAAGAAGCAAACTGAAGAATTACAGATCTTATCTCCATATA
* *
92752294 TCGGTTATGGAGCAGATCAAAAATGGCAAGTTTTATCTCCATGTATCGGCTATGGAGCAGATTTT
66 TCGGCTATGGAGCAGATCAAAAATGGCAAGTTTTATCCCCATGTATCGGCTATGGAGCAGATTTT
** * *
92752359 AGCCATTGACCTCATCTCCCTGAA-GTTGC-AGTGGAACAGGTTGAAATT
131 AGCCACCGACCTCATCTCCCT-AAGGTAGCAAG-AGAACAGGTTGAAATT
**
92752407 AC-AAACGTTATCTTCTTGAAGTTGC
1 ACTAGTC-TTATCTTCTTGAAGTTGC
92752432 TATAGGACTA
Statistics
Matches: 180, Mismatches: 18, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
176 5 0.03
177 135 0.75
178 40 0.22
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.30
Consensus pattern (178 bp):
ACTAGTCTTATCTTCTTGAAGTTGCAAGAAGCAAACTGAAGAATTACAGATCTTATCTCCATATA
TCGGCTATGGAGCAGATCAAAAATGGCAAGTTTTATCCCCATGTATCGGCTATGGAGCAGATTTT
AGCCACCGACCTCATCTCCCTAAGGTAGCAAGAGAACAGGTTGAAATT
Found at i:92752692 original size:80 final size:80
Alignment explanation
Indices: 92752603--92752767 Score: 330
Period size: 80 Copynumber: 2.1 Consensus size: 80
92752593 ATATATTGTG
92752603 TATATTATTTATTCGTATATATATATTGTTTTGTATATCATTTATACTGTTTCATTACAAAATTA
1 TATATTATTTATTCGTATATATATATTGTTTTGTATATCATTTATACTGTTTCATTACAAAATTA
92752668 TTTCTTACACTTATA
66 TTTCTTACACTTATA
92752683 TATATTATTTATTCGTATATATATATTGTTTTGTATATCATTTATACTGTTTCATTACAAAATTA
1 TATATTATTTATTCGTATATATATATTGTTTTGTATATCATTTATACTGTTTCATTACAAAATTA
92752748 TTTCTTACACTTATA
66 TTTCTTACACTTATA
92752763 TATAT
1 TATAT
92752768 GTAAATGTTT
Statistics
Matches: 85, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
80 85 1.00
ACGTcount: A:0.32, C:0.10, G:0.05, T:0.54
Consensus pattern (80 bp):
TATATTATTTATTCGTATATATATATTGTTTTGTATATCATTTATACTGTTTCATTACAAAATTA
TTTCTTACACTTATA
Found at i:92756408 original size:45 final size:45
Alignment explanation
Indices: 92756353--92756439 Score: 122
Period size: 45 Copynumber: 1.9 Consensus size: 45
92756343 CAAATTTTAA
* *
92756353 GAATTATTGACATTATTATCCATATAATA-TCATTTTATGTTTCAG
1 GAATTATTGACACTATTATCCACATAATACT-ATTTTATGTTTCAG
* *
92756398 GAATTTTTGACACTATTATCCACGTAATACTATTTTATGTTT
1 GAATTATTGACACTATTATCCACATAATACTATTTTATGTTT
92756440 GCATATCAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
45 36 0.97
46 1 0.03
ACGTcount: A:0.31, C:0.13, G:0.09, T:0.47
Consensus pattern (45 bp):
GAATTATTGACACTATTATCCACATAATACTATTTTATGTTTCAG
Found at i:92756569 original size:30 final size:27
Alignment explanation
Indices: 92756503--92756570 Score: 70
Period size: 27 Copynumber: 2.5 Consensus size: 27
92756493 TTTAAAAAAA
*
92756503 TTGTGTACAATTAAATAAAAATTTTAT
1 TTGTGTATAATTAAATAAAAATTTTAT
92756530 TTGTG--TAATTAAATTAAAATTAATTTT-T
1 TTGTGTATAATTAAA-T-AAA--AATTTTAT
92756558 TTGTGTATAATTA
1 TTGTGTATAATTA
92756571 TACTAAATTA
Statistics
Matches: 34, Mismatches: 1, Indels: 9
0.77 0.02 0.20
Matches are distributed among these distances:
25 7 0.21
26 1 0.03
27 8 0.24
28 6 0.18
29 6 0.18
30 6 0.18
ACGTcount: A:0.40, C:0.01, G:0.09, T:0.50
Consensus pattern (27 bp):
TTGTGTATAATTAAATAAAAATTTTAT
Found at i:92765481 original size:25 final size:25
Alignment explanation
Indices: 92765453--92765501 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
92765443 CCCCGTTTAT
** *
92765453 TAAAAGATTAAACTCACCATTTAAC
1 TAAAAGACAAAACGCACCATTTAAC
92765478 TAAAAGACAAAACGCACCATTTAA
1 TAAAAGACAAAACGCACCATTTAA
92765502 ACAACCTATT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.51, C:0.20, G:0.06, T:0.22
Consensus pattern (25 bp):
TAAAAGACAAAACGCACCATTTAAC
Found at i:92767381 original size:25 final size:25
Alignment explanation
Indices: 92767318--92767387 Score: 61
Period size: 25 Copynumber: 2.8 Consensus size: 25
92767308 CCATTTAGTT
* *
92767318 ATTAATTTTAAAATTTTAAAATTAA
1 ATTAATTTAAAAAATTTAAAATTAA
** * *
92767343 ATTTTTTTCCAAAAGTTTAAAATT-A
1 ATTAATTT-AAAAAATTTAAAATTAA
92767368 ATTAATTTAAAAAAATTTAA
1 ATTAATTT-AAAAAATTTAA
92767388 TCTCTAAAAA
Statistics
Matches: 35, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
25 22 0.63
26 13 0.37
ACGTcount: A:0.50, C:0.03, G:0.01, T:0.46
Consensus pattern (25 bp):
ATTAATTTAAAAAATTTAAAATTAA
Found at i:92774065 original size:16 final size:16
Alignment explanation
Indices: 92774046--92774088 Score: 59
Period size: 16 Copynumber: 2.6 Consensus size: 16
92774036 CTTTAGCCAT
92774046 ATTTACTTTTAGTGTA
1 ATTTACTTTTAGTGTA
* *
92774062 ATTTATTTTTAGTTTA
1 ATTTACTTTTAGTGTA
92774078 ATTTCACTTTT
1 ATTT-ACTTTT
92774089 CTAATTTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
16 18 0.78
17 5 0.22
ACGTcount: A:0.23, C:0.07, G:0.07, T:0.63
Consensus pattern (16 bp):
ATTTACTTTTAGTGTA
Found at i:92785118 original size:93 final size:93
Alignment explanation
Indices: 92785006--92785178 Score: 319
Period size: 93 Copynumber: 1.9 Consensus size: 93
92784996 CGCCCATAAG
*
92785006 CGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
92785071 ACGAGCTCGGATGCCTAGTTACATCTCT
66 ACGAGCTCGGATGCCTAGTTACATCTCT
* *
92785099 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGACCTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
92785164 ACGAGCTCGGATGCC
66 ACGAGCTCGGATGCC
92785179 CAAATATCCT
Statistics
Matches: 77, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 77 1.00
ACGTcount: A:0.27, C:0.32, G:0.21, T:0.20
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCT
Found at i:92785174 original size:46 final size:46
Alignment explanation
Indices: 92784999--92785174 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
92784989 TGTAACCCGC
* *
92784999 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
92785045 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
92785091 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
92785138 CCATAAGTGACCTCGGACTCAACTCAACGAGCTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
92785175 TGCCCAAATA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
46 67 0.61
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.31, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:92785194 original size:46 final size:44
Alignment explanation
Indices: 92785007--92785193 Score: 125
Period size: 46 Copynumber: 4.0 Consensus size: 44
92784997 GCCCATAAGC
* *
92785007 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGC--ATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGCTC-GG-ATGCCCAAATCC-T-AGT
* *
92785053 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT--C
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCCA---A-ATC-CTAGT
* * *
92785100 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGC--ATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGCTCGG--ATGCCCAAATCC-T-AGT
*
92785146 GACCTCGGACTCAACTCAACGAGCTCGGATGCCCAAATATCCTAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCC-AA-ATCCTAGT
92785192 GA
1 GA
92785194 CATGTCACTT
Statistics
Matches: 111, Mismatches: 13, Indels: 34
0.70 0.08 0.22
Matches are distributed among these distances:
42 1 0.01
43 4 0.04
44 7 0.06
45 2 0.02
46 57 0.51
47 28 0.25
48 4 0.04
49 3 0.03
50 4 0.04
51 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.21
Consensus pattern (44 bp):
GAACTCGGACTCAACTCAACGAGCTCGGATGCCCAAATCCTAGT
Found at i:92787737 original size:30 final size:30
Alignment explanation
Indices: 92787693--92787781 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
92787683 CAAAGATAAC
92787693 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
92787722 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
92787752 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
92787782 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:92787741 original size:15 final size:15
Alignment explanation
Indices: 92787693--92787772 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
92787683 CAAAGATAAC
*
92787693 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
92787707 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
92787722 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
92787737 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
92787752 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
92787767 AAGAAA
1 AAGAAA
92787773 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:92787781 original size:15 final size:15
Alignment explanation
Indices: 92787704--92787781 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
92787694 AGAAAACCGA
92787704 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
92787719 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
92787733 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
92787748 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
92787764 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
92787779 ATA
1 ATA
92787782 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:92790059 original size:50 final size:50
Alignment explanation
Indices: 92790003--92790105 Score: 206
Period size: 50 Copynumber: 2.1 Consensus size: 50
92789993 CATATTTTAT
92790003 TCATCATCTAATTATATCTCTACTATTTTTAATGATTTTTCAAACTCACA
1 TCATCATCTAATTATATCTCTACTATTTTTAATGATTTTTCAAACTCACA
92790053 TCATCATCTAATTATATCTCTACTATTTTTAATGATTTTTCAAACTCACA
1 TCATCATCTAATTATATCTCTACTATTTTTAATGATTTTTCAAACTCACA
92790103 TCA
1 TCA
92790106 CTGCTGCTGT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 53 1.00
ACGTcount: A:0.32, C:0.20, G:0.02, T:0.46
Consensus pattern (50 bp):
TCATCATCTAATTATATCTCTACTATTTTTAATGATTTTTCAAACTCACA
Found at i:92790835 original size:46 final size:46
Alignment explanation
Indices: 92790768--92790945 Score: 223
Period size: 46 Copynumber: 3.8 Consensus size: 46
92790758 TGTAACCCGC
* *
92790768 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGTTCGCAT
* * *
92790814 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG-TTCGCAT
* *** * *
92790860 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGATATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGATGTTCGCAT
*
92790907 CCATAAGTGACCTCGGACTCAACTCAACGAGCTCGGATG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG
92790946 CCCAAATATC
Statistics
Matches: 108, Mismatches: 21, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
46 72 0.67
47 36 0.33
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGTTCGCAT
Found at i:92790887 original size:93 final size:93
Alignment explanation
Indices: 92790775--92790947 Score: 310
Period size: 93 Copynumber: 1.9 Consensus size: 93
92790765 CGCCCATAAG
* *
92790775 CGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGATATTCGCATCCATAAGTGAACTCGGACTCAACTCA
92790840 ACGAGCTCGGATGCCTAGTTACATCTCT
66 ACGAGCTCGGATGCCTAGTTACATCTCT
* *
92790868 CGAACTCGGACTCAACTCAACGAGTTCGGATATTCGCATCCATAAGTGACCTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGATATTCGCATCCATAAGTGAACTCGGACTCAACTCA
92790933 ACGAGCTCGGATGCC
66 ACGAGCTCGGATGCC
92790948 CAAATATCCT
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.31, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGATATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCT
Found at i:92795479 original size:3 final size:3
Alignment explanation
Indices: 92795471--92795528 Score: 116
Period size: 3 Copynumber: 19.3 Consensus size: 3
92795461 CTTGTTCTTA
92795471 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
92795519 AAT AAT AAT A
1 AAT AAT AAT A
92795529 CAATACATAT
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 55 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:92805701 original size:30 final size:30
Alignment explanation
Indices: 92805665--92805769 Score: 165
Period size: 30 Copynumber: 3.5 Consensus size: 30
92805655 CATGACTATC
92805665 ACACACGGGCATGTGGTCTACCCGTATGTT
1 ACACACGGGCATGTGGTCTACCCGTATGTT
* *
92805695 ACACACGGGCGTGTAGTCTACCCGTATGTT
1 ACACACGGGCATGTGGTCTACCCGTATGTT
* *
92805725 ACACACGGGCATGTGGTCTACCCGTGTGTC
1 ACACACGGGCATGTGGTCTACCCGTATGTT
*
92805755 ACACACGAGCATGTG
1 ACACACGGGCATGTG
92805770 AATCACTCGT
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 68 1.00
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.24
Consensus pattern (30 bp):
ACACACGGGCATGTGGTCTACCCGTATGTT
Found at i:92811963 original size:48 final size:47
Alignment explanation
Indices: 92811866--92811992 Score: 139
Period size: 48 Copynumber: 2.7 Consensus size: 47
92811856 GGCTAAATAC
* * * * * * *
92811866 ATTGGCACTAAGTGTGCAAGA-TCAGATAACTTCGGTTATATACATAT
1 ATTGGCACTTAGTGTGC-AGATTGAGATAGCTCCAGCTATATACACAT
*
92811913 ATTGGCACTTAGTGTGCATGATTGAGATAGCTCCAGCTATATATACAT
1 ATTGGCACTTAGTGTGCA-GATTGAGATAGCTCCAGCTATATACACAT
*
92811961 ATTGGCACTTAGTGTGCGAGATTGATATAGCT
1 ATTGGCACTTAGTGTGC-AGATTGAGATAGCT
92811993 TCGGCTATTT
Statistics
Matches: 68, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
46 1 0.01
47 18 0.26
48 48 0.71
49 1 0.01
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (47 bp):
ATTGGCACTTAGTGTGCAGATTGAGATAGCTCCAGCTATATACACAT
Found at i:92812000 original size:48 final size:47
Alignment explanation
Indices: 92811779--92812023 Score: 219
Period size: 43 Copynumber: 5.4 Consensus size: 47
92811769 TATATTGTAC
* *
92811779 ATTGGCACTAAGTGTGGGAGACTGAGATAGCTTCGGCTA-A-AT-AT
1 ATTGGCACTAAGTGTGCGAGATTGAGATAGCTTCGGCTATATATAAT
* ** * *
92811823 ATTGGCAGTAAGTGTGCGAGA-CCAAATAGCTTCGGCTA-A-AT-AC
1 ATTGGCACTAAGTGTGCGAGATTGAGATAGCTTCGGCTATATATAAT
* * * * *
92811866 ATTGGCACTAAGTGTGCAAGA-TCAGATAACTTCGGTTATATACATAT
1 ATTGGCACTAAGTGTGCGAGATTGAGATAGCTTCGGCTATATATA-AT
* * *
92811913 ATTGGCACTTAGTGTGC-ATGATTGAGATAGCTCCAGCTATATATACAT
1 ATTGGCACTAAGTGTGCGA-GATTGAGATAGCTTCGGCTATATATA-AT
* *
92811961 ATTGGCACTTAGTGTGCGAGATTGATATAGCTTCGGCTAT-T-T-AT
1 ATTGGCACTAAGTGTGCGAGATTGAGATAGCTTCGGCTATATATAAT
92812005 -TTGGCACTAAGTGTGCGAG
1 ATTGGCACTAAGTGTGCGAG
92812024 CTTCCAGGTA
Statistics
Matches: 168, Mismatches: 26, Indels: 15
0.80 0.12 0.07
Matches are distributed among these distances:
43 68 0.40
44 22 0.13
45 1 0.01
46 2 0.01
47 20 0.12
48 54 0.32
49 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.31
Consensus pattern (47 bp):
ATTGGCACTAAGTGTGCGAGATTGAGATAGCTTCGGCTATATATAAT
Found at i:92813748 original size:40 final size:37
Alignment explanation
Indices: 92813662--92813793 Score: 148
Period size: 35 Copynumber: 3.6 Consensus size: 37
92813652 TTTTCCTCAT
*
92813662 TGAAATACCATACCTACATTT-TACAACTCGGTATGG-
1 TGAAATACCATACCTACATTTCT-CAACTCAGTATGGA
* *
92813698 -GAAATGCCATACCTACATTTCTTAACTCAGTATGGA
1 TGAAATACCATACCTACATTTCTCAACTCAGTATGGA
* *
92813734 TTTGATAATACCATACTTACATTTCACAACTCAGTATGGA
1 --TGA-AATACCATACCTACATTTCTCAACTCAGTATGGA
92813774 TG--ATACCATACCTACATTTC
1 TGAAATACCATACCTACATTTC
92813794 ACACTTTTCC
Statistics
Matches: 82, Mismatches: 8, Indels: 13
0.80 0.08 0.13
Matches are distributed among these distances:
35 47 0.57
36 1 0.01
38 2 0.02
39 2 0.02
40 30 0.37
ACGTcount: A:0.33, C:0.23, G:0.11, T:0.33
Consensus pattern (37 bp):
TGAAATACCATACCTACATTTCTCAACTCAGTATGGA
Found at i:92818098 original size:93 final size:93
Alignment explanation
Indices: 92817986--92818157 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
92817976 GCCCATAAGT
* *
92817986 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
92818051 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
92818079 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
92818144 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
92818158 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:92818153 original size:46 final size:46
Alignment explanation
Indices: 92817978--92818153 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
92817968 TGTAACCCGC
* * *
92817978 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
92818024 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
92818074 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
92818117 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
92818154 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:92820582 original size:30 final size:30
Alignment explanation
Indices: 92820538--92820626 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
92820528 CAAAGATAAC
92820538 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
92820567 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
92820597 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
92820627 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:92820586 original size:15 final size:15
Alignment explanation
Indices: 92820538--92820617 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
92820528 CAAAGATAAC
*
92820538 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
92820552 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
92820567 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
92820582 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
92820597 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
92820612 AAGAAA
1 AAGAAA
92820618 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:92820626 original size:15 final size:15
Alignment explanation
Indices: 92820549--92820626 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
92820539 AGAAAACCGA
92820549 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
92820564 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
92820578 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
92820593 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
92820609 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
92820624 ATA
1 ATA
92820627 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:92823649 original size:93 final size:93
Alignment explanation
Indices: 92823537--92823708 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
92823527 GCCCATAAGT
* *
92823537 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
92823602 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
92823630 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
92823695 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
92823709 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:92823704 original size:46 final size:46
Alignment explanation
Indices: 92823529--92823704 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
92823519 TGTAACCCGC
* * *
92823529 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
92823575 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
92823625 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
92823668 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
92823705 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:92829528 original size:40 final size:37
Alignment explanation
Indices: 92829442--92829573 Score: 148
Period size: 35 Copynumber: 3.6 Consensus size: 37
92829432 TTTTCCTCAT
*
92829442 TGAAATACCATACCTACATTT-TACAACTCGGTATGG-
1 TGAAATACCATACCTACATTTCT-CAACTCAGTATGGA
* *
92829478 -GAAATGCCATACCTACATTTCTTAACTCAGTATGGA
1 TGAAATACCATACCTACATTTCTCAACTCAGTATGGA
* *
92829514 TTTGATAATACCATACTTACATTTCACAACTCAGTATGGA
1 --TGA-AATACCATACCTACATTTCTCAACTCAGTATGGA
92829554 TG--ATACCATACCTACATTTC
1 TGAAATACCATACCTACATTTC
92829574 ACACTTTTCC
Statistics
Matches: 82, Mismatches: 8, Indels: 13
0.80 0.08 0.13
Matches are distributed among these distances:
35 47 0.57
36 1 0.01
38 2 0.02
39 2 0.02
40 30 0.37
ACGTcount: A:0.33, C:0.23, G:0.11, T:0.33
Consensus pattern (37 bp):
TGAAATACCATACCTACATTTCTCAACTCAGTATGGA
Found at i:92832799 original size:22 final size:22
Alignment explanation
Indices: 92832774--92832830 Score: 69
Period size: 22 Copynumber: 2.6 Consensus size: 22
92832764 GAACAGTACC
*
92832774 ACACGCCTATGTGGCTTATGTG
1 ACACGCCCATGTGGCTTATGTG
* * *
92832796 ACACGCCCGTGTGGTTTTTGTG
1 ACACGCCCATGTGGCTTATGTG
*
92832818 ACACGCCCGTGTG
1 ACACGCCCATGTG
92832831 CTTTACCCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.14, C:0.26, G:0.30, T:0.30
Consensus pattern (22 bp):
ACACGCCCATGTGGCTTATGTG
Found at i:92833755 original size:17 final size:18
Alignment explanation
Indices: 92833735--92833768 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
92833725 TCAGTATCAG
*
92833735 TCAGTCATT-AGTAATAA
1 TCAGTAATTCAGTAATAA
92833752 TCAGTAATTCAGTAATA
1 TCAGTAATTCAGTAATA
92833769 GTCAAATATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.41, C:0.12, G:0.12, T:0.35
Consensus pattern (18 bp):
TCAGTAATTCAGTAATAA
Found at i:92833789 original size:18 final size:18
Alignment explanation
Indices: 92833758--92833801 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
92833748 ATAATCAGTA
*
92833758 ATTCAGTAATAGTCAAAT
1 ATTCAGTAACAGTCAAAT
* *
92833776 ATTCAGTAGCAGTCAATT
1 ATTCAGTAACAGTCAAAT
*
92833794 ATTGAGTA
1 ATTCAGTA
92833802 CCTTTATTTG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.34
Consensus pattern (18 bp):
ATTCAGTAACAGTCAAAT
Found at i:92837545 original size:24 final size:24
Alignment explanation
Indices: 92837489--92837539 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
92837479 TCTATTGCCC
92837489 TTTCCTTTACTTCCTTTGAATAAA
1 TTTCCTTTACTTCCTTTGAATAAA
92837513 TTTCCTTTACTTCCTTTGAATAAA
1 TTTCCTTTACTTCCTTTGAATAAA
92837537 TTT
1 TTT
92837540 TTTTTAAGGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.24, C:0.20, G:0.04, T:0.53
Consensus pattern (24 bp):
TTTCCTTTACTTCCTTTGAATAAA
Found at i:92840135 original size:23 final size:23
Alignment explanation
Indices: 92840105--92840156 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 23
92840095 AAAAGCTATC
*
92840105 TACAAAATCAAATC-TCTAATATT
1 TACAAAATCAAATCTTCTAAGA-T
92840128 TACAAAATCAAATCTTCTAAGAT
1 TACAAAATCAAATCTTCTAAGAT
92840151 TACAAA
1 TACAAA
92840157 TCCTATAAGA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 21 0.78
24 6 0.22
ACGTcount: A:0.50, C:0.17, G:0.02, T:0.31
Consensus pattern (23 bp):
TACAAAATCAAATCTTCTAAGAT
Found at i:92840158 original size:17 final size:17
Alignment explanation
Indices: 92840136--92840187 Score: 59
Period size: 17 Copynumber: 3.1 Consensus size: 17
92840126 TTTACAAAAT
92840136 CAAATCTTCTAAGATTA
1 CAAATCTTCTAAGATTA
* * *
92840153 CAAATCCTATAAGATTG
1 CAAATCTTCTAAGATTA
* *
92840170 CATATCTTCGAAGATTA
1 CAAATCTTCTAAGATTA
92840187 C
1 C
92840188 GTTTCATATT
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.38, C:0.19, G:0.10, T:0.33
Consensus pattern (17 bp):
CAAATCTTCTAAGATTA
Found at i:92841536 original size:15 final size:14
Alignment explanation
Indices: 92841516--92841557 Score: 57
Period size: 15 Copynumber: 2.9 Consensus size: 14
92841506 CGATGAATTT
92841516 ATTGAATTTATATTG
1 ATTGAA-TTATATTG
*
92841531 ATTGAAATTATTTTG
1 ATTG-AATTATATTG
92841546 ATTGAATTATAT
1 ATTGAATTATAT
92841558 AATATATATG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
14 7 0.29
15 15 0.62
16 2 0.08
ACGTcount: A:0.36, C:0.00, G:0.12, T:0.52
Consensus pattern (14 bp):
ATTGAATTATATTG
Found at i:92841958 original size:23 final size:22
Alignment explanation
Indices: 92841932--92842012 Score: 67
Period size: 21 Copynumber: 3.7 Consensus size: 22
92841922 TTTACCGATC
* *
92841932 AGGCACTTTATGTGTCGTATTT
1 AGGCACCTCATGTGTCGTATTT
* *
92841954 GAGGCACCTCGTGTGTCGTA-TC
1 -AGGCACCTCATGTGTCGTATTT
* *
92841976 AGGCACCTCGTGTGTTGT-TTT
1 AGGCACCTCATGTGTCGTATTT
* *
92841997 AGGCACTTTATGTGTC
1 AGGCACCTCATGTGTC
92842013 ATATAATGAT
Statistics
Matches: 47, Mismatches: 10, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
21 30 0.64
22 1 0.02
23 16 0.34
ACGTcount: A:0.15, C:0.20, G:0.27, T:0.38
Consensus pattern (22 bp):
AGGCACCTCATGTGTCGTATTT
Found at i:92843739 original size:16 final size:17
Alignment explanation
Indices: 92843708--92843740 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
92843698 TTCATAAGTA
92843708 TATATCAATCATTTCAT
1 TATATCAATCATTTCAT
92843725 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
92843741 GCTCCATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:92844576 original size:46 final size:46
Alignment explanation
Indices: 92844026--92844574 Score: 778
Period size: 46 Copynumber: 11.9 Consensus size: 46
92844016 TTTGACATAA
* * * * *
92844026 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTTCATATCATGT
* *
92844072 TGCCATGGTATTTTTCAACCATGGTCTTATTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCATGT
**
92844118 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCATCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCATGT
* *
92844164 TGCCATGGTATCTTTCAACCATGGTCTTATTTATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCATGT
* **
92844210 TGCCATGGTATCTTTCAACCATGGCCTTATTCATTTCCCATCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCATGT
* * *
92844256 TGCCATGGTATCTTTCAATCATGGTCTTCTTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCATGT
* *
92844302 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCTGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCATGT
***
92844348 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCATGT
* *
92844394 TGCCATGGTATCTTTCAACCATAGTCTTATTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCATGT
** *
92844440 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCATGT
**
92844486 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA-GAT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCATG-T
* **
92844532 TGCCATGGTATCTTTCAACCATAGTCTTACACATTTCATATCA
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCA
92844575 GAGAGCACAC
Statistics
Matches: 459, Mismatches: 42, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
45 5 0.01
46 454 0.99
ACGTcount: A:0.21, C:0.24, G:0.13, T:0.41
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCATGT
Found at i:92846413 original size:2 final size:2
Alignment explanation
Indices: 92846406--92846449 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
92846396 CTTTCCTTTC
92846406 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
92846448 AT
1 AT
92846450 TAAATAAAAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:92849398 original size:26 final size:26
Alignment explanation
Indices: 92849369--92849450 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
92849359 CGGTACAAAT
*
92849369 TGATAATGGGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
92849395 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
92849421 TGATAATGGGTTAGGTAAATGTTCTA
1 TGATAATGGGTTAGGTAAATGTTCCA
92849447 TGAT
1 TGAT
92849451 GGGCATTTCA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.32, C:0.06, G:0.26, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:92851086 original size:27 final size:27
Alignment explanation
Indices: 92851048--92851180 Score: 159
Period size: 27 Copynumber: 5.0 Consensus size: 27
92851038 AAGCGTCCTA
*
92851048 GTGGCTATGCCACAATTATCTGATCTG
1 GTGGCTCTGCCACAATTATCTGATCTG
92851075 GTGGCTCTGCCAC-ATATAT-TG-TCCTG
1 GTGGCTCTGCCACAAT-TATCTGAT-CTG
*
92851101 GTGGCTATGCCACAATTATCTGATCTG
1 GTGGCTCTGCCACAATTATCTGATCTG
*
92851128 GTGGCTCTGCCAC-ATATATCTGTTCTG
1 GTGGCTCTGCCACAAT-TATCTGATCTG
*
92851155 GTGGCTCCGCCACAA-TATCTGTATCT
1 GTGGCTCTGCCACAATTATCTG-ATCT
92851181 AGTGACTTCG
Statistics
Matches: 92, Mismatches: 6, Indels: 16
0.81 0.05 0.14
Matches are distributed among these distances:
25 1 0.01
26 30 0.33
27 59 0.64
28 2 0.02
ACGTcount: A:0.19, C:0.26, G:0.22, T:0.34
Consensus pattern (27 bp):
GTGGCTCTGCCACAATTATCTGATCTG
Found at i:92851122 original size:53 final size:54
Alignment explanation
Indices: 92851042--92851180 Score: 219
Period size: 53 Copynumber: 2.6 Consensus size: 54
92851032 TGGAGGAAGC
*
92851042 GTCCTAGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATAT-T
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
92851095 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
* **
92851149 GTTCTGGTGGCTCCGCCACAA-TATCTGTATCT
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCT
92851181 AGTGACTTCG
Statistics
Matches: 80, Mismatches: 4, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
53 57 0.71
54 23 0.29
ACGTcount: A:0.19, C:0.26, G:0.22, T:0.34
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:92851180 original size:32 final size:27
Alignment explanation
Indices: 92851056--92851202 Score: 135
Period size: 27 Copynumber: 5.5 Consensus size: 27
92851046 TAGTGGCTAT
*
92851056 GCCACA-ATTATCTGATCTGGTGGCTCT
1 GCCACATA-TATCTGATCTGGTGGCTCC
**
92851083 GCCACATATAT-TG-TCCTGGTGGCTAT
1 GCCACATATATCTGAT-CTGGTGGCTCC
*
92851109 GCCACA-ATTATCTGATCTGGTGGCTCT
1 GCCACATA-TATCTGATCTGGTGGCTCC
*
92851136 GCCACATATATCTGTTCTGGTGGCTCC
1 GCCACATATATCTGATCTGGTGGCTCC
* * *
92851163 GCCACA-ATATCTGTATCTAGTGACTTC
1 GCCACATATATCTG-ATCTGGTGGCTCC
*
92851190 GTCACA-ATATCTG
1 GCCACATATATCTG
92851203 GCAGCCTCGC
Statistics
Matches: 104, Mismatches: 9, Indels: 14
0.82 0.07 0.11
Matches are distributed among these distances:
25 2 0.02
26 28 0.27
27 71 0.68
28 3 0.03
ACGTcount: A:0.20, C:0.26, G:0.20, T:0.33
Consensus pattern (27 bp):
GCCACATATATCTGATCTGGTGGCTCC
Found at i:92856412 original size:26 final size:26
Alignment explanation
Indices: 92856383--92856489 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
92856373 TGGTACAAAT
92856383 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
92856409 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
92856435 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
92856461 TGATAAT-GGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
92856486 TGAT
1 TGAT
92856490 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
25 22 0.29
26 55 0.71
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Done.