Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 300 of 318
Found at i:94126945 original size:20 final size:19
Alignment explanation
Indices: 94126922--94126973 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 19
94126912 TTTTTTTATC
94126922 ATTTTTATACTTTTTAAATA
1 ATTTTTATA-TTTTTAAATA
*
94126942 ATTTTTA-ATTTTAAAAATA
1 ATTTTTATATTTT-TAAATA
94126961 A-TTTTATATTTTT
1 ATTTTTATATTTTT
94126974 GAGTTTTCTA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
18 9 0.32
19 12 0.43
20 7 0.25
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.62
Consensus pattern (19 bp):
ATTTTTATATTTTTAAATA
Found at i:94127869 original size:11 final size:11
Alignment explanation
Indices: 94127855--94127880 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
94127845 CTGAAGAGAT
94127855 AAAGAAAATTA
1 AAAGAAAATTA
94127866 AAAGAAAATTA
1 AAAGAAAATTA
94127877 AAAG
1 AAAG
94127881 GACATAAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.73, C:0.00, G:0.12, T:0.15
Consensus pattern (11 bp):
AAAGAAAATTA
Found at i:94128483 original size:2 final size:2
Alignment explanation
Indices: 94128470--94128504 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
94128460 TCACTTATTA
*
94128470 AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
94128505 ATTCATGGTA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:94129312 original size:3 final size:3
Alignment explanation
Indices: 94129304--94129381 Score: 156
Period size: 3 Copynumber: 26.0 Consensus size: 3
94129294 TTTCCCTACT
94129304 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
94129352 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
94129382 TGTCACTACT
Statistics
Matches: 75, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 75 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:94131544 original size:14 final size:14
Alignment explanation
Indices: 94131525--94131555 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
94131515 ATTGTTTTAG
*
94131525 TTTCTTTTTATTAT
1 TTTCTTTTTATCAT
94131539 TTTCTTTTTATCAT
1 TTTCTTTTTATCAT
94131553 TTT
1 TTT
94131556 ATTATTTCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.13, C:0.10, G:0.00, T:0.77
Consensus pattern (14 bp):
TTTCTTTTTATCAT
Found at i:94135005 original size:21 final size:20
Alignment explanation
Indices: 94134967--94135005 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
94134957 TCTTATAAAT
*
94134967 AATGGTTTAAACATTAATCA
1 AATGGTTTAAACAATAATCA
*
94134987 AATGCGTTTAATCAATAAT
1 AATG-GTTTAAACAATAAT
94135006 TTCTCTAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.44, C:0.10, G:0.10, T:0.36
Consensus pattern (20 bp):
AATGGTTTAAACAATAATCA
Found at i:94140061 original size:16 final size:16
Alignment explanation
Indices: 94140040--94140072 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
94140030 TAAAAGATTA
94140040 AAAGTAA-ATGATATAC
1 AAAGTAATAT-ATATAC
94140056 AAAGTAATATATATAC
1 AAAGTAATATATATAC
94140072 A
1 A
94140073 TGAAAAACCT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 14 0.88
17 2 0.12
ACGTcount: A:0.58, C:0.06, G:0.09, T:0.27
Consensus pattern (16 bp):
AAAGTAATATATATAC
Found at i:94142982 original size:46 final size:46
Alignment explanation
Indices: 94142930--94143104 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
94142920 TGGTTGAGCA
*
94142930 TCCGAACTCGTCGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
94142976 TTCGAACTCGTTGAGTTGAGTCC-AGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
94143020 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
94143068 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
94143105 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 12, Indels: 20
0.77 0.09 0.14
Matches are distributed among these distances:
41 2 0.02
42 5 0.05
44 3 0.03
45 5 0.05
46 78 0.73
47 5 0.05
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:94143084 original size:92 final size:93
Alignment explanation
Indices: 94142927--94143096 Score: 279
Period size: 92 Copynumber: 1.8 Consensus size: 93
94142917 GGATGGTTGA
* **
94142927 GCATCCGAACTCGTCGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTCGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
94142992 TGAGTCC-AGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
94143019 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTCGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
94143084 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
94143097 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
92 66 0.93
93 5 0.07
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTCGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:94145738 original size:46 final size:45
Alignment explanation
Indices: 94145627--94145844 Score: 181
Period size: 46 Copynumber: 4.8 Consensus size: 45
94145617 AGATTTGTGT
* * * * *
94145627 GCCAGTGTAAGACCATGTATGGGACATGGCATC-GGCATTGAGACGAGG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCA--CAGATGAGA
* *
94145675 GCTAGTGTAAGTCATGTCTGGGACATGCATCAGCCACAGTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACAG-ATGAGA
* * * * **
94145721 GCCACTATAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTTA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCAC-AGATGAGA
* * * * *
94145767 GCCAGTGTCAGACATGTCTGGGACATGCGTCGGCTAC-GA-GATGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACAGATGA-GA
*
94145811 GCTAGTGTAAGACATGTCTGGGACATGCATCAGC
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGC
94145845 ACGGTTACAT
Statistics
Matches: 138, Mismatches: 28, Indels: 12
0.78 0.16 0.07
Matches are distributed among these distances:
43 1 0.01
44 32 0.23
45 2 0.01
46 75 0.54
47 18 0.13
48 10 0.07
ACGTcount: A:0.26, C:0.21, G:0.31, T:0.22
Consensus pattern (45 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACAGATGAGA
Found at i:94149309 original size:46 final size:46
Alignment explanation
Indices: 94149257--94149432 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
94149247 TGGTTGAGCA
*
94149257 TCCGAACTCGTCGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
94149303 TTCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
94149348 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
94149396 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
94149433 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.58
47 27 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:94149413 original size:93 final size:93
Alignment explanation
Indices: 94149254--94149424 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
94149244 GGATGGTTGA
* **
94149254 GCATCCGAACTCGTCGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTCGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
94149319 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
94149347 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTCGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
94149412 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
94149425 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTCGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:94163584 original size:16 final size:16
Alignment explanation
Indices: 94163563--94163595 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
94163553 TAAAAGATTA
94163563 AAAGTAA-ATGATATAC
1 AAAGTAATAT-ATATAC
94163579 AAAGTAATATATATAC
1 AAAGTAATATATATAC
94163595 A
1 A
94163596 TGAAAAACCT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 14 0.88
17 2 0.12
ACGTcount: A:0.58, C:0.06, G:0.09, T:0.27
Consensus pattern (16 bp):
AAAGTAATATATATAC
Found at i:94166369 original size:18 final size:19
Alignment explanation
Indices: 94166346--94166383 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
94166336 TCTCCAATTA
*
94166346 AAATAAA-CATGATATAAT
1 AAATAAATCATGATAAAAT
94166364 AAATAAATCATGATAAAAT
1 AAATAAATCATGATAAAAT
94166383 A
1 A
94166384 TACCTGAGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.63, C:0.05, G:0.05, T:0.26
Consensus pattern (19 bp):
AAATAAATCATGATAAAAT
Found at i:94166665 original size:22 final size:23
Alignment explanation
Indices: 94166630--94166683 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 23
94166620 TTATAAATGC
94166630 AATTTAAAAGATA-TAAT-ACAAT
1 AATTT-AAAGATATTAATAACAAT
*
94166652 AATTTAAAGCATATTTAATAATAAT
1 AATTTAAAG-ATA-TTAATAACAAT
94166677 AATTTAA
1 AATTTAA
94166684 TTATAAAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
21 4 0.15
22 8 0.30
24 4 0.15
25 11 0.41
ACGTcount: A:0.56, C:0.04, G:0.04, T:0.37
Consensus pattern (23 bp):
AATTTAAAGATATTAATAACAAT
Found at i:94168659 original size:12 final size:13
Alignment explanation
Indices: 94168630--94168659 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
94168620 ATAATGTCAA
94168630 AAATTAAATATAC
1 AAATTAAATATAC
94168643 AAATTAAATAT-C
1 AAATTAAATATAC
94168655 AAATT
1 AAATT
94168660 TTAGCATTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 6 0.35
13 11 0.65
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (13 bp):
AAATTAAATATAC
Found at i:94177584 original size:16 final size:18
Alignment explanation
Indices: 94177545--94177586 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
94177535 TAAGTTTATA
94177545 ATATTT-TATATTATGTT
1 ATATTTATATATTATGTT
*
94177562 ATTTTTATATATTATG-T
1 ATATTTATATATTATGTT
94177579 A-ATTTATA
1 ATATTTATA
94177587 ACATATTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 6 0.27
17 7 0.32
18 9 0.41
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (18 bp):
ATATTTATATATTATGTT
Found at i:94178397 original size:20 final size:18
Alignment explanation
Indices: 94178366--94178414 Score: 64
Period size: 18 Copynumber: 2.7 Consensus size: 18
94178356 TATCTTTCAA
94178366 TAAAAA-TTATAAAATATT
1 TAAAAATTTATAAAA-ATT
94178384 TAAAATATTTATAAAAATT
1 TAAAA-ATTTATAAAAATT
*
94178403 TCAAAATTTATA
1 TAAAAATTTATA
94178415 TTTTTTAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
18 12 0.43
19 8 0.29
20 8 0.29
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (18 bp):
TAAAAATTTATAAAAATT
Found at i:94181310 original size:30 final size:27
Alignment explanation
Indices: 94181248--94181310 Score: 65
Period size: 30 Copynumber: 2.2 Consensus size: 27
94181238 TAAAATTTCA
*
94181248 TATGTATAATTGTAATAAGTCAAAGTT
1 TATGTATAATTGTAATAAGTCAAAATT
*
94181275 GATGTATTAATTGTACATTCAA-TCAAAATT
1 TATGTA-TAATTGTA-A-T-AAGTCAAAATT
94181305 TATGTA
1 TATGTA
94181311 CCGTTTTAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
27 5 0.17
28 8 0.28
29 1 0.03
30 13 0.45
31 2 0.07
ACGTcount: A:0.40, C:0.06, G:0.13, T:0.41
Consensus pattern (27 bp):
TATGTATAATTGTAATAAGTCAAAATT
Found at i:94184563 original size:20 final size:22
Alignment explanation
Indices: 94184540--94184590 Score: 61
Period size: 20 Copynumber: 2.4 Consensus size: 22
94184530 AAACCTGTTC
94184540 ATATTTTTTTAA-AAATATTT-
1 ATATTTTTTTAATAAATATTTA
* *
94184560 ATATTATTTTAATTTAATATTTA
1 ATATTTTTTTAA-TAAATATTTA
94184583 ATATTTTT
1 ATATTTTT
94184591 ATATATTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
20 11 0.44
22 7 0.28
23 7 0.28
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (22 bp):
ATATTTTTTTAATAAATATTTA
Found at i:94200248 original size:21 final size:20
Alignment explanation
Indices: 94200222--94200272 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 20
94200212 CTATTTTCTC
* *
94200222 ATTAAAATTTATTTTTAAATT
1 ATTAAAATTTATATCT-AATT
*
94200243 ATTAAAATTAATATCTAATT
1 ATTAAAATTTATATCTAATT
94200263 A-TAAAATTTA
1 ATTAAAATTTA
94200273 ATTTAAAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
19 8 0.31
20 5 0.19
21 13 0.50
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (20 bp):
ATTAAAATTTATATCTAATT
Found at i:94202780 original size:2 final size:2
Alignment explanation
Indices: 94202773--94202816 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
94202763 CTATAAATGA
94202773 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
94202815 TC
1 TC
94202817 GTATATATTA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:94207482 original size:45 final size:45
Alignment explanation
Indices: 94207428--94207513 Score: 172
Period size: 45 Copynumber: 1.9 Consensus size: 45
94207418 CAATTTACTC
94207428 ATTAATACACATTGAATCAATGTATATATGTTAAGTCTATGTAAA
1 ATTAATACACATTGAATCAATGTATATATGTTAAGTCTATGTAAA
94207473 ATTAATACACATTGAATCAATGTATATATGTTAAGTCTATG
1 ATTAATACACATTGAATCAATGTATATATGTTAAGTCTATG
94207514 GTTAACATGT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.41, C:0.09, G:0.12, T:0.38
Consensus pattern (45 bp):
ATTAATACACATTGAATCAATGTATATATGTTAAGTCTATGTAAA
Found at i:94210129 original size:25 final size:24
Alignment explanation
Indices: 94210078--94210129 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
94210068 CGGTAAGATG
* **
94210078 TTTTTTGAAAAGTCTGCATTTTAA
1 TTTTTTGAAAAATCTGCATTGGAA
*
94210102 TTTTTTGAAAAATACTGCATTGGCA
1 TTTTTTGAAAAAT-CTGCATTGGAA
94210127 TTT
1 TTT
94210130 CATGCAGCCT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
24 12 0.52
25 11 0.48
ACGTcount: A:0.29, C:0.10, G:0.13, T:0.48
Consensus pattern (24 bp):
TTTTTTGAAAAATCTGCATTGGAA
Found at i:94211308 original size:48 final size:48
Alignment explanation
Indices: 94211227--94211355 Score: 158
Period size: 46 Copynumber: 2.7 Consensus size: 48
94211217 CAAGTGAAAG
* * *
94211227 TAATAGTGTCTAGTTACCCATTTGGGCTAAACCTATACAAAT-AAT-GAA
1 TAATAGTGTCTAGTTACCCATTAGGGTTGAACCTATAC--ATGAATCGAA
*
94211275 TCATAGTGTCTAGTTACCCATTAGGGTTGAACC--TACATGAATCGAA
1 TAATAGTGTCTAGTTACCCATTAGGGTTGAACCTATACATGAATCGAA
* *
94211321 TAATAGTGTCTGGTCACCCATTAGGGTTGAACCTA
1 TAATAGTGTCTAGTTACCCATTAGGGTTGAACCTA
94211356 CATAACAAAT
Statistics
Matches: 70, Mismatches: 7, Indels: 8
0.82 0.08 0.09
Matches are distributed among these distances:
44 2 0.03
45 3 0.04
46 36 0.51
48 29 0.41
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.31
Consensus pattern (48 bp):
TAATAGTGTCTAGTTACCCATTAGGGTTGAACCTATACATGAATCGAA
Found at i:94212398 original size:31 final size:31
Alignment explanation
Indices: 94212355--94212415 Score: 104
Period size: 31 Copynumber: 2.0 Consensus size: 31
94212345 CTTGTCACTT
94212355 GTAGCCGAAGCTACCACTATTCACTGATCAA
1 GTAGCCGAAGCTACCACTATTCACTGATCAA
* *
94212386 GTAGCCGGAGCTACCACTTTTCACTGATCA
1 GTAGCCGAAGCTACCACTATTCACTGATCA
94212416 GATTACTTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.25
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTATTCACTGATCAA
Found at i:94212562 original size:35 final size:35
Alignment explanation
Indices: 94212511--94212707 Score: 252
Period size: 35 Copynumber: 5.6 Consensus size: 35
94212501 TCCTCATTGA
* * *
94212511 AATACCATACCTACATTTCACAACTCGGTATGGAA
1 AATACCATACCTACGTTTCACAACTCAGTATGGAT
* **
94212546 AATGA-CATACCTACATTTCTTAACTCAGTATGGAT
1 AAT-ACCATACCTACGTTTCACAACTCAGTATGGAT
* *
94212581 AATACCATACCTACGTTTCACAACTCAGTACGGTT
1 AATACCATACCTACGTTTCACAACTCAGTATGGAT
*
94212616 AATACCATACCTACGTTTCACAACTCAATATGGAT
1 AATACCATACCTACGTTTCACAACTCAGTATGGAT
* * * *
94212651 GATACTATACCTATGTTTCACAACTCAGTATGGTT
1 AATACCATACCTACGTTTCACAACTCAGTATGGAT
*
94212686 AATACCATACCTAAGTTTCACA
1 AATACCATACCTACGTTTCACA
94212708 TCTTGCCATG
Statistics
Matches: 140, Mismatches: 20, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
34 1 0.01
35 138 0.99
36 1 0.01
ACGTcount: A:0.35, C:0.24, G:0.11, T:0.30
Consensus pattern (35 bp):
AATACCATACCTACGTTTCACAACTCAGTATGGAT
Found at i:94212693 original size:105 final size:105
Alignment explanation
Indices: 94212511--94212707 Score: 279
Period size: 105 Copynumber: 1.9 Consensus size: 105
94212501 TCCTCATTGA
** **
94212511 AATACCATACCTACATTTCACAACTCGGTATGGAAAATGACATACCTACATTTCTTAACTCAGTA
1 AATACCATACCTACATTTCACAACTCAATATGGAAAATGACATACCTACATTTCACAACTCAGTA
*
94212576 TGGATAATACCATACCTACGTTTCACAACTCAGTACGGTT
66 TGGATAATACCATACCTAAGTTTCACAACTCAGTACGGTT
* ** **
94212616 AATACCATACCTACGTTTCACAACTCAATATGGATGAT-ACTATACCTATGTTTCACAACTCAGT
1 AATACCATACCTACATTTCACAACTCAATATGGAAAATGAC-ATACCTACATTTCACAACTCAGT
*
94212680 ATGGTTAATACCATACCTAAGTTTCACA
65 ATGGATAATACCATACCTAAGTTTCACA
94212708 TCTTGCCATG
Statistics
Matches: 80, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
104 2 0.03
105 78 0.98
ACGTcount: A:0.35, C:0.24, G:0.11, T:0.30
Consensus pattern (105 bp):
AATACCATACCTACATTTCACAACTCAATATGGAAAATGACATACCTACATTTCACAACTCAGTA
TGGATAATACCATACCTAAGTTTCACAACTCAGTACGGTT
Found at i:94216332 original size:21 final size:22
Alignment explanation
Indices: 94216290--94216338 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 22
94216280 AAAATATGTA
* * *
94216290 TTTTCTTTTTTTTCCTTATTCT
1 TTTTCTCTTTTTCCCCTATTCT
94216312 TTTTCTCTTTTTCCCCT-TTCT
1 TTTTCTCTTTTTCCCCTATTCT
*
94216333 TCTTCT
1 TTTTCT
94216339 TCTTCTTTTC
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
21 9 0.39
22 14 0.61
ACGTcount: A:0.02, C:0.27, G:0.00, T:0.71
Consensus pattern (22 bp):
TTTTCTCTTTTTCCCCTATTCT
Found at i:94216888 original size:25 final size:24
Alignment explanation
Indices: 94216860--94216906 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
94216850 AACCAAAATC
*
94216860 ACAAAATATATATTTTCATAAAAGA
1 ACAAAATATATA-ATTCATAAAAGA
*
94216885 ACAATATATATAATTCATAAAA
1 ACAAAATATATAATTCATAAAA
94216907 CATATTTGGA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 9 0.45
25 11 0.55
ACGTcount: A:0.57, C:0.09, G:0.02, T:0.32
Consensus pattern (24 bp):
ACAAAATATATAATTCATAAAAGA
Found at i:94220693 original size:140 final size:140
Alignment explanation
Indices: 94220436--94220830 Score: 654
Period size: 140 Copynumber: 2.9 Consensus size: 140
94220426 CTAAAGCTTG
* * * ** * * * *
94220436 ACTCA-CTCTCGCAATATGAGATGATTTTTTTGAACAGTAGGAATTGAAAAGCAGAAATTGAAAG
1 ACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAAAACAGGAATTGGAAAGTAGAAACTGAAAA
* * *
94220500 TACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGGGTTGATTTTTTTTGAAAAACA
66 TACCTCAGCATGCCCCGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTTTGAAAAACA
94220565 AAAAGGTACA
131 AAAAGGTACA
94220575 ACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAAAACAGGAATTGGAAAGTAGAAACTGAAAA
1 ACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAAAACAGGAATTGGAAAGTAGAAACTGAAAA
94220640 TACCTCAGCATGCCCCGAGGCTCAACTCACCTCTCACAATATGAGTTGA-TTTTTTTGAAAAACA
66 TACCTCAGCATGCCCCGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTTTGAAAAACA
94220704 AAAAGGTACA
131 AAAAGGTACA
94220714 ACTCACCTCTCGCAATATGAGTTGA--TTTTTAAAAAACAGGAATTGGAAAGTAGAAACTGAAAA
1 ACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAAAACAGGAATTGGAAAGTAGAAACTGAAAA
94220777 TACCTCAGCATGCCCCGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTT
66 TACCTCAGCATGCCCCGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTT
94220831 GAAACATGAA
Statistics
Matches: 242, Mismatches: 12, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
137 87 0.36
138 4 0.02
139 55 0.23
140 96 0.40
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.27
Consensus pattern (140 bp):
ACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAAAACAGGAATTGGAAAGTAGAAACTGAAAA
TACCTCAGCATGCCCCGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTTTGAAAAACA
AAAAGGTACA
Found at i:94220888 original size:71 final size:71
Alignment explanation
Indices: 94220793--94221051 Score: 304
Period size: 71 Copynumber: 3.5 Consensus size: 71
94220783 AGCATGCCCC
* * *
94220793 GAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAACATGAATTGAAATTACCCCAACG
1 GAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGAAACATGAATTGAAATTACCTCAACG
94220858 TGTCTT
66 TGTCTT
* *
94220864 GAGGCTCAACTCATCTCTCGCAATATGAGCTGATTTTCATGAATTAAAAAGCA-GAAATTGAAAG
1 GAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT--TG------AAA-CATG-AATTGAAAT
* * **
94220928 TACCTCAGCGTGCCCC
56 TACCTCAACGTGTCTT
* * * *
94220944 GAGGTTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACG
1 GAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGAAACATGAATTGAAATTACCTCAACG
94221009 TGTCTT
66 TGTCTT
94221015 GAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
1 GAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
94221052 CTTGGAAAAC
Statistics
Matches: 155, Mismatches: 22, Indels: 22
0.78 0.11 0.11
Matches are distributed among these distances:
71 90 0.58
72 3 0.02
73 2 0.01
78 2 0.01
79 4 0.03
80 54 0.35
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.30
Consensus pattern (71 bp):
GAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGAAACATGAATTGAAATTACCTCAACG
TGTCTT
Found at i:94221139 original size:160 final size:158
Alignment explanation
Indices: 94220712--94221302 Score: 890
Period size: 160 Copynumber: 3.8 Consensus size: 158
94220702 CAAAAAGGTA
* ** * ** * *
94220712 CAACTCACCTCTCGCAATATGAGTTGATTTTTAAAAAACAGGAATTGGAAAGTAGAAACTGAAAA
1 CAACTCACCTCTCGCAATATGAGCTGATTTTTGGAAAACATGAATTAAAAAGCAGAAATTGAAAA
* * * *
94220777 TACCTCAGCATGCCCCGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAACATGAAT
66 TACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAACATAAAT
*
94220842 TGAAATTACCCCAACGTGTCTTGAGGCT
131 TGAAATTACCTCAACGTGTCTTGAGGCT
* *
94220870 CAACTCATCTCTCGCAATATGAGCTGA-TTTT------CATGAATTAAAAAGCAGAAATTGAAAG
1 CAACTCACCTCTCGCAATATGAGCTGATTTTTGGAAAACATGAATTAAAAAGCAGAAATTGAAAA
*
94220928 TACCTCAGCGTGCCCCGAGGTTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAACATAAAT
66 TACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAACATAAAT
94220993 TGAAATTACCTCAACGTGTCTTGAGGCT
131 TGAAATTACCTCAACGTGTCTTGAGGCT
94221021 CAACTCACCTCTCGCAATATGAGCTGATTTTCTTGGAAAACATGAATTAAAAAGCAGAAATTGAA
1 CAACTCACCTCTCGCAATATGAGCTGA-TTT-TTGGAAAACATGAATTAAAAAGCAGAAATTGAA
*
94221086 AATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAACATAA
64 AATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAACATAA
*
94221151 ATTGAAATTACCTCAACGTGTCTTAAGGCT
129 ATTGAAATTACCTCAACGTGTCTTGAGGCT
* * * *
94221181 CAACTCATCTCTTGCAATATGAGCTGATTTTCTTGGAAAGCATGAACTAAAAAGCAGAAATTGAA
1 CAACTCACCTCTCGCAATATGAGCTGA-TTT-TTGGAAAACATGAATTAAAAAGCAGAAATTGAA
*
94221246 AATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG
64 AATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG
94221303 GAAAAAACAA
Statistics
Matches: 401, Mismatches: 23, Indels: 16
0.91 0.05 0.04
Matches are distributed among these distances:
151 134 0.33
153 2 0.00
154 2 0.00
157 4 0.01
158 25 0.06
160 234 0.58
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (158 bp):
CAACTCACCTCTCGCAATATGAGCTGATTTTTGGAAAACATGAATTAAAAAGCAGAAATTGAAAA
TACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAACATAAAT
TGAAATTACCTCAACGTGTCTTGAGGCT
Found at i:94221198 original size:71 final size:71
Alignment explanation
Indices: 94221078--94221211 Score: 189
Period size: 71 Copynumber: 1.9 Consensus size: 71
94221068 TAAAAAGCAG
* * *
94221078 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG
1 AAATTGAAAATACCTCAACGTGCCCTAAGGCTCAACTCACTTCTCGCAATATGAGCTGATTTTTG
94221143 AAACAT
66 AAACAT
* * * *
94221149 AAATTGAAATTACCTCAACGTGTCTTAAGGCTCAACTCA-TCTCTTGCAATATGAGCTGATTTT
1 AAATTGAAAATACCTCAACGTGCCCTAAGGCTCAACTCACT-TCTCGCAATATGAGCTGATTTT
94221212 CTTGGAAAGC
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
70 1 0.02
71 54 0.98
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.32
Consensus pattern (71 bp):
AAATTGAAAATACCTCAACGTGCCCTAAGGCTCAACTCACTTCTCGCAATATGAGCTGATTTTTG
AAACAT
Found at i:94233783 original size:2 final size:2
Alignment explanation
Indices: 94233776--94233803 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
94233766 CATACAAGAG
94233776 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
94233804 AGCCTAAAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:94234023 original size:21 final size:22
Alignment explanation
Indices: 94233976--94234024 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
94233966 ACGATGATAA
* *
94233976 TAATAATAATAACAATACTAAT
1 TAATAAAAATAACAAGACTAAT
*
94233998 T-ATAAAAATAACAAGAC-ATT
1 TAATAAAAATAACAAGACTAAT
94234018 TAATAAA
1 TAATAAA
94234025 TATATGAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
20 3 0.13
21 19 0.83
22 1 0.04
ACGTcount: A:0.61, C:0.08, G:0.02, T:0.29
Consensus pattern (22 bp):
TAATAAAAATAACAAGACTAAT
Found at i:94234511 original size:22 final size:22
Alignment explanation
Indices: 94234463--94234503 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
94234453 GTGAGGAAAA
94234463 AAAG-AGAGAAGGGAGAGGAAG
1 AAAGAAGAGAAGGGAGAGGAAG
*
94234484 AAAGAAGAGAGGGGAGAGGA
1 AAAGAAGAGAAGGGAGAGGA
94234504 GGGCAGAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (22 bp):
AAAGAAGAGAAGGGAGAGGAAG
Found at i:94245016 original size:2 final size:2
Alignment explanation
Indices: 94245009--94245033 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
94244999 CATACAAGAG
94245009 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
94245034 TTAAGCCTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:94246811 original size:34 final size:34
Alignment explanation
Indices: 94246746--94246811 Score: 82
Period size: 34 Copynumber: 1.9 Consensus size: 34
94246736 CAAATACACT
*
94246746 AAAAATATTAAAATAAATATTTTTCACTAAATTG
1 AAAAATATTAAAATAAATATTTATCACTAAATTG
*
94246780 AAAATATATTAAAA-CAATATTTAT-ACTTAAAT
1 AAAA-ATATTAAAATAAATATTTATCAC-TAAAT
94246812 AACACTAAGA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
33 2 0.07
34 17 0.61
35 9 0.32
ACGTcount: A:0.55, C:0.06, G:0.02, T:0.38
Consensus pattern (34 bp):
AAAAATATTAAAATAAATATTTATCACTAAATTG
Found at i:94249002 original size:6 final size:6
Alignment explanation
Indices: 94248967--94249000 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
94248957 GCCCTATAGC
* *
94248967 AGCAGC AGCAGA AGCAGA AGCAGA AGCAAA AGCA
1 AGCAGA AGCAGA AGCAGA AGCAGA AGCAGA AGCA
94249001 AAGGGTTTAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.50, C:0.21, G:0.29, T:0.00
Consensus pattern (6 bp):
AGCAGA
Found at i:94252927 original size:148 final size:148
Alignment explanation
Indices: 94252657--94252928 Score: 331
Period size: 148 Copynumber: 1.8 Consensus size: 148
94252647 AGTGACAAAT
* * * *
94252657 AATAATTAAACACTTTAATACAATCTAGGCAATAATAGGAAATAACTACAATAACCAAATAATTT
1 AATAATCAAACACTTTAATACAACCTAGGCAATAATAGGAAATAAC-ACAATAACAAAACAATTT
* * * * * *
94252722 AGTACATACAAATTCATTTCTGTATTGTACAATAACCAAATAATTTAGTACATACAAATTCATTT
65 AG-ACATAAAAAATCATTTCTGTATCGTACAATAACCAAACAATTTAATACAAACAAATTCATTT
94252787 TTGTCATACACATGGCGGAC
129 TTGTCATACACATGGCGGAC
94252807 AATAATCAAACACTTTAATACAACCTAGGCAATGAA-A-GACAATAAC-CAAT-ACAAAAACAAT
1 AATAATCAAACACTTTAATACAACCTAGGCAAT-AATAGGA-AATAACACAATAAC-AAAACAAT
*
94252868 TTA-ACATAAAGAAATCTATTTCTGTCA-CGTACAATAATCAAACAATTTAATACAAACAAAT
63 TTAGACATAAA-AAATC-ATTTCTGT-ATCGTACAATAACCAAACAATTTAATACAAACAAAT
94252929 CCAAAATAGT
Statistics
Matches: 105, Mismatches: 11, Indels: 14
0.81 0.08 0.11
Matches are distributed among these distances:
146 6 0.06
147 6 0.06
148 50 0.48
149 3 0.03
150 38 0.36
151 2 0.02
ACGTcount: A:0.48, C:0.17, G:0.07, T:0.28
Consensus pattern (148 bp):
AATAATCAAACACTTTAATACAACCTAGGCAATAATAGGAAATAACACAATAACAAAACAATTTA
GACATAAAAAATCATTTCTGTATCGTACAATAACCAAACAATTTAATACAAACAAATTCATTTTT
GTCATACACATGGCGGAC
Found at i:94254264 original size:16 final size:16
Alignment explanation
Indices: 94254243--94254293 Score: 50
Period size: 16 Copynumber: 3.1 Consensus size: 16
94254233 TTTTAAGAGA
94254243 TAAATTAGAATTAGAT
1 TAAATTAGAATTAGAT
**
94254259 TAAATTTAGGTTTGAGA-
1 TAAA-TTAGAATT-AGAT
*
94254276 TAAACTAGAATTAGAT
1 TAAATTAGAATTAGAT
94254292 TA
1 TA
94254294 GATATTTTTG
Statistics
Matches: 27, Mismatches: 5, Indels: 6
0.71 0.13 0.16
Matches are distributed among these distances:
15 3 0.11
16 11 0.41
17 10 0.37
18 3 0.11
ACGTcount: A:0.45, C:0.02, G:0.16, T:0.37
Consensus pattern (16 bp):
TAAATTAGAATTAGAT
Found at i:94254682 original size:20 final size:19
Alignment explanation
Indices: 94254653--94254690 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
94254643 GTAACTTGCT
*
94254653 GTGTAGTTAACTTTATAAA
1 GTGTAGTTAAATTTATAAA
94254672 GTGTAAGTTAAATTTATAA
1 GTGT-AGTTAAATTTATAA
94254691 GCACATTAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.39, C:0.03, G:0.16, T:0.42
Consensus pattern (19 bp):
GTGTAGTTAAATTTATAAA
Found at i:94259070 original size:22 final size:22
Alignment explanation
Indices: 94259045--94259095 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
94259035 AAATTGTAGC
* *
94259045 AAAATAGTGAA-AAAATAACTAG
1 AAAATAGTCAAGAAAATAA-TAA
94259067 AAAATAG-CAAGAAAATAATAA
1 AAAATAGTCAAGAAAATAATAA
94259088 AAAATAGT
1 AAAATAGT
94259096 TTTCATGTTC
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
21 11 0.44
22 14 0.56
ACGTcount: A:0.67, C:0.04, G:0.12, T:0.18
Consensus pattern (22 bp):
AAAATAGTCAAGAAAATAATAA
Found at i:94263423 original size:29 final size:30
Alignment explanation
Indices: 94263368--94263424 Score: 71
Period size: 29 Copynumber: 1.9 Consensus size: 30
94263358 AACGGGTTGG
* * **
94263368 CACATAGGCGTGTGGTTAGCCTGTGTGGCT
1 CACATAGGCGTGTGCTCAGCCCATGTGGCT
94263398 CACA-AGGCGTGTGCTCAGCCCATGTGG
1 CACATAGGCGTGTGCTCAGCCCATGTGG
94263425 GAAAAGGCTT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
29 19 0.83
30 4 0.17
ACGTcount: A:0.16, C:0.25, G:0.35, T:0.25
Consensus pattern (30 bp):
CACATAGGCGTGTGCTCAGCCCATGTGGCT
Found at i:94265289 original size:12 final size:12
Alignment explanation
Indices: 94265272--94265341 Score: 54
Period size: 12 Copynumber: 5.8 Consensus size: 12
94265262 AGAAGTCTAA
*
94265272 AAACATAACAAT
1 AAACATAAAAAT
94265284 AAACATAAAAAT
1 AAACATAAAAAT
*
94265296 AGAA-ATAAAACT
1 A-AACATAAAAAT
*
94265308 AAAAATAAGAAAT
1 AAACATAA-AAAT
*
94265321 AAA-ATTAAAATT
1 AAACA-TAAAAAT
*
94265333 AAAAATAAA
1 AAACATAAA
94265342 TGATAAATAG
Statistics
Matches: 49, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
11 2 0.04
12 35 0.71
13 12 0.24
ACGTcount: A:0.73, C:0.06, G:0.03, T:0.19
Consensus pattern (12 bp):
AAACATAAAAAT
Found at i:94265306 original size:19 final size:19
Alignment explanation
Indices: 94265284--94265341 Score: 75
Period size: 19 Copynumber: 3.1 Consensus size: 19
94265274 ACATAACAAT
94265284 AAACATAAAAAT-AGAAATA
1 AAAC-TAAAAATAAGAAATA
94265303 AAACTAAAAATAAGAAATA
1 AAACTAAAAATAAGAAATA
* *
94265322 AAATTAAAATTAA-AAATA
1 AAACTAAAAATAAGAAATA
94265340 AA
1 AA
94265342 TGATAAATAG
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
18 14 0.39
19 22 0.61
ACGTcount: A:0.74, C:0.03, G:0.03, T:0.19
Consensus pattern (19 bp):
AAACTAAAAATAAGAAATA
Found at i:94265348 original size:25 final size:25
Alignment explanation
Indices: 94265283--94265340 Score: 75
Period size: 25 Copynumber: 2.4 Consensus size: 25
94265273 AACATAACAA
*
94265283 TAAACATAA-AAATAGAAA-TAAAAC
1 TAAAAATAAGAAATA-AAATTAAAAC
*
94265307 TAAAAATAAGAAATAAAATTAAAAT
1 TAAAAATAAGAAATAAAATTAAAAC
94265332 TAAAAATAA
1 TAAAAATAA
94265341 ATGATAAATA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
24 11 0.37
25 19 0.63
ACGTcount: A:0.72, C:0.03, G:0.03, T:0.21
Consensus pattern (25 bp):
TAAAAATAAGAAATAAAATTAAAAC
Found at i:94266592 original size:35 final size:35
Alignment explanation
Indices: 94266524--94266822 Score: 341
Period size: 35 Copynumber: 8.6 Consensus size: 35
94266514 CATTGAAATA
* * * * *
94266524 CCATACCTACATTTCAT-ACTCGGTATGGAAAATA
1 CCATACCTACGTATCATAACTCAGTATGGACAATG
* * * *
94266558 CCATACCTAAGTTTCATAACTCAGTATGGAAAATA
1 CCATACCTACGTATCATAACTCAGTATGGACAATG
* *
94266593 CCATACCTACGTTTCATAACTCAGTATGGACGATG
1 CCATACCTACGTATCATAACTCAGTATGGACAATG
* * *
94266628 CCATACCTACATGTCATAACTCAGTATGGACGATG
1 CCATACCTACGTATCATAACTCAGTATGGACAATG
* *
94266663 CCATACCTACGTATCATAGCTCAGTATGGACGATG
1 CCATACCTACGTATCATAACTCAGTATGGACAATG
*
94266698 CCATACCTACGTATCATAGCTCAGTATGGACAATG
1 CCATACCTACGTATCATAACTCAGTATGGACAATG
* * *
94266733 CCATACCTACGTATCATAGCTCAGTATGGTCGATG
1 CCATACCTACGTATCATAACTCAGTATGGACAATG
* * * *** *
94266768 CCATACCTACTTATCA-AGCTCGGTATGGTTGATA
1 CCATACCTACGTATCATAACTCAGTATGGACAATG
94266802 CCATACCTACGTATCATAACT
1 CCATACCTACGTATCATAACT
94266823 TTACCACGGG
Statistics
Matches: 242, Mismatches: 21, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
34 45 0.19
35 197 0.81
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.28
Consensus pattern (35 bp):
CCATACCTACGTATCATAACTCAGTATGGACAATG
Found at i:94266705 original size:105 final size:105
Alignment explanation
Indices: 94266524--94266822 Score: 386
Period size: 105 Copynumber: 2.9 Consensus size: 105
94266514 CATTGAAATA
* * ** * * * *
94266524 CCATACCTACATTTCAT-ACTCGGTATGGAAAATACCATACCTAAGTTTCATAACTCAGTATGGA
1 CCATACCTACATATCATAACTCAGTATGGACGATGCCATACCTACGTATCATAGCTCAGTATGGA
* * *
94266588 AAATACCATACCTACGTTTCATAACTCAGTATGGACGATG
66 AGATACCATACCTACGTATCATAACTCAGTATGGACAATG
*
94266628 CCATACCTACATGTCATAACTCAGTATGGACGATGCCATACCTACGTATCATAGCTCAGTATGGA
1 CCATACCTACATATCATAACTCAGTATGGACGATGCCATACCTACGTATCATAGCTCAGTATGGA
* * *
94266693 CGATGCCATACCTACGTATCATAGCTCAGTATGGACAATG
66 AGATACCATACCTACGTATCATAACTCAGTATGGACAATG
* * * * * *
94266733 CCATACCTACGTATCATAGCTCAGTATGGTCGATGCCATACCTACTTATCA-AGCTCGGTATGGT
1 CCATACCTACATATCATAACTCAGTATGGACGATGCCATACCTACGTATCATAGCTCAGTATGGA
*
94266797 TGATACCATACCTACGTATCATAACT
66 AGATACCATACCTACGTATCATAACT
94266823 TTACCACGGG
Statistics
Matches: 170, Mismatches: 24, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
104 50 0.29
105 120 0.71
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.28
Consensus pattern (105 bp):
CCATACCTACATATCATAACTCAGTATGGACGATGCCATACCTACGTATCATAGCTCAGTATGGA
AGATACCATACCTACGTATCATAACTCAGTATGGACAATG
Found at i:94269211 original size:21 final size:21
Alignment explanation
Indices: 94269185--94269231 Score: 94
Period size: 21 Copynumber: 2.2 Consensus size: 21
94269175 TCCGGTGTGT
94269185 CGAGGAGACCGAAGTATCTAG
1 CGAGGAGACCGAAGTATCTAG
94269206 CGAGGAGACCGAAGTATCTAG
1 CGAGGAGACCGAAGTATCTAG
94269227 CGAGG
1 CGAGG
94269232 CGAGTCACAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.32, C:0.19, G:0.36, T:0.13
Consensus pattern (21 bp):
CGAGGAGACCGAAGTATCTAG
Found at i:94275013 original size:6 final size:6
Alignment explanation
Indices: 94275004--94275049 Score: 74
Period size: 6 Copynumber: 7.5 Consensus size: 6
94274994 AATAAAATTG
*
94275004 AAATGA AAATAA AAATAA AAATAA AAATAA AAATAAA AAATAA AAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAAT-AA AAATAA AAA
94275050 GATAAGAGGA
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
6 32 0.84
7 6 0.16
ACGTcount: A:0.83, C:0.00, G:0.02, T:0.15
Consensus pattern (6 bp):
AAATAA
Found at i:94287196 original size:28 final size:28
Alignment explanation
Indices: 94287142--94287196 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
94287132 GATCTCGAAC
* **
94287142 CTTGGACTTTGGATCCCAAACTTTAAAT
1 CTTGGACTTAGGATCCCAAACCCTAAAT
*
94287170 CTTGGACTTAGGATCCTAAACCCTAAA
1 CTTGGACTTAGGATCCCAAACCCTAAA
94287197 CCCTAGATCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.31
Consensus pattern (28 bp):
CTTGGACTTAGGATCCCAAACCCTAAAT
Found at i:94287264 original size:21 final size:21
Alignment explanation
Indices: 94287234--94287303 Score: 70
Period size: 21 Copynumber: 3.3 Consensus size: 21
94287224 ACTTGGATTA
* *
94287234 GTCCAGGGTCTAGGGT-TCATG
1 GTCCAAGGTCTAGGGTGT-AAG
*
94287255 GTCCAAGGTCCAGGGTGTAAG
1 GTCCAAGGTCTAGGGTGTAAG
* *
94287276 GTTCAAGGTCTAGGGTGTAGG
1 GTCCAAGGTCTAGGGTGTAAG
*
94287297 GTTCAAG
1 GTCCAAG
94287304 TTAAAAAAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
21 41 0.98
22 1 0.02
ACGTcount: A:0.20, C:0.16, G:0.39, T:0.26
Consensus pattern (21 bp):
GTCCAAGGTCTAGGGTGTAAG
Found at i:94287756 original size:13 final size:13
Alignment explanation
Indices: 94287738--94287769 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
94287728 AGTTTAGCAT
94287738 TGCTTTTAAGAAG
1 TGCTTTTAAGAAG
*
94287751 TGCTTTTGAGAAG
1 TGCTTTTAAGAAG
94287764 TGCTTT
1 TGCTTT
94287770 GGAAAAGTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.22, C:0.09, G:0.25, T:0.44
Consensus pattern (13 bp):
TGCTTTTAAGAAG
Found at i:94287800 original size:26 final size:26
Alignment explanation
Indices: 94287748--94287803 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 26
94287738 TGCTTTTAAG
* * *
94287748 AAGTGCTTTTGAGAAGTGCTTTGGAA
1 AAGTGATTTTGAGAAATACTTTGGAA
* *
94287774 AAGTGATTTTGAGAAATATTTTTGAA
1 AAGTGATTTTGAGAAATACTTTGGAA
94287800 AAGT
1 AAGT
94287804 TTGGTTTAAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.34, C:0.04, G:0.25, T:0.38
Consensus pattern (26 bp):
AAGTGATTTTGAGAAATACTTTGGAA
Found at i:94291457 original size:17 final size:18
Alignment explanation
Indices: 94291435--94291468 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
94291425 GAAAAACAAT
94291435 AACAAAATTA-ACAATAA
1 AACAAAATTATACAATAA
*
94291452 AACAAAGTTATACAATA
1 AACAAAATTATACAATA
94291469 TCCAAATAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.65, C:0.12, G:0.03, T:0.21
Consensus pattern (18 bp):
AACAAAATTATACAATAA
Found at i:94294740 original size:177 final size:177
Alignment explanation
Indices: 94294441--94294794 Score: 564
Period size: 177 Copynumber: 2.0 Consensus size: 177
94294431 CAATTAACAC
* * *
94294441 GTAGACTTTTGATTTTATAAGTGGTAGGATGTTAGACTTCCATTAATTGGTTTAAAGTTTGTATT
1 GTAGACTTATGATTTTATAAGTGGTAGGATGCTAGACTTCCACTAATTGGTTTAAAGTTTGTATT
* * * **
94294506 TGTCATGTAATTGAATTTTGGGTGTTGGTTTGCCATGACTAGGTCAGTGGCCGTCTCCCTTGGAT
66 CGTCATGTAATTGAATTTTGGGTGTTGATTTGCCATGACTAGGTCAATGGCCGTCTCCCAAGGAT
* * * *
94294571 GACAAGTTCAAAAGTATTTTGTTTTTTTTATATGTAAGGACATTTTT
131 AACAAGTTCAAAAGTATCTAGTTATTTTTATATGTAAGGACATTTTT
94294618 GTAGACTTATGATTTTATAAGTGGTAGGATGCTAGACTTCCACTAATTGGTTTAAAGTTTGTATT
1 GTAGACTTATGATTTTATAAGTGGTAGGATGCTAGACTTCCACTAATTGGTTTAAAGTTTGTATT
* *
94294683 CGTCATGTAATTGAATTTTGGGTGTTGATTTGCCATGGCTAGGTCAATGGTCGTCTCCCAAGGAT
66 CGTCATGTAATTGAATTTTGGGTGTTGATTTGCCATGACTAGGTCAATGGCCGTCTCCCAAGGAT
* *
94294748 AACAAGTTCAAAATTATCTAGTTATTTTTATATGTAAGGACTTTTTT
131 AACAAGTTCAAAAGTATCTAGTTATTTTTATATGTAAGGACATTTTT
94294795 TTTGTCTTCT
Statistics
Matches: 161, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
177 161 1.00
ACGTcount: A:0.25, C:0.11, G:0.22, T:0.42
Consensus pattern (177 bp):
GTAGACTTATGATTTTATAAGTGGTAGGATGCTAGACTTCCACTAATTGGTTTAAAGTTTGTATT
CGTCATGTAATTGAATTTTGGGTGTTGATTTGCCATGACTAGGTCAATGGCCGTCTCCCAAGGAT
AACAAGTTCAAAAGTATCTAGTTATTTTTATATGTAAGGACATTTTT
Found at i:94302493 original size:33 final size:32
Alignment explanation
Indices: 94302268--94302548 Score: 120
Period size: 33 Copynumber: 8.4 Consensus size: 32
94302258 AATTATTCAA
*
94302268 ACGTAAGACCATAGTTGGACCATGGCAATGTTTAT
1 ACGTAAGACCATAGTTGGACCATGGC-A--TTTAG
* * * * *
94302303 ATGTAAGACCATAGATGGGCTATGACATTCT-G
1 ACGTAAGACCATAGTTGGACCATGGCATT-TAG
* ** *** *
94302335 ATGATAAGACCATAACTGGGTTATGGCACTATAG
1 ACG-TAAGACCATAGTTGGACCATGGCA-TTTAG
* * *
94302369 ACGTAAGACCATGGTTGGACCATGGTAATATTAT
1 ACGTAAGACCATAGTTGGACCATGG-CAT-TTAG
* * * * *
94302403 ATGAAAGGCCATAGCTGAGA-TATGGCATTCT-G
1 ACGTAAGACCATAGTTG-GACCATGGCATT-TAG
* * * *
94302435 ATGATAAGACCATAACTAGG-TCATGGCACTTTAG
1 ACG-TAAGACCAT-AGTTGGACCATGGCA-TTTAG
* *
94302469 ACGTAAGACCATGGTTGGACCATGGCAGTGTTAT
1 ACGTAAGACCATAGTTGGACCATGGCA-T-TTAG
* *
94302503 ACGTAAGACCATAGTTGGACTATGGCATTTTG
1 ACGTAAGACCATAGTTGGACCATGGCATTTAG
*
94302535 ATGATAAGACCATA
1 ACG-TAAGACCATA
94302549 ACTGGGTTAT
Statistics
Matches: 183, Mismatches: 47, Indels: 34
0.69 0.18 0.13
Matches are distributed among these distances:
32 16 0.09
33 85 0.46
34 59 0.32
35 23 0.13
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.27
Consensus pattern (32 bp):
ACGTAAGACCATAGTTGGACCATGGCATTTAG
Found at i:94302575 original size:100 final size:99
Alignment explanation
Indices: 94302267--94302628 Score: 426
Period size: 100 Copynumber: 3.6 Consensus size: 99
94302257 CAATTATTCA
* * * *
94302267 AACGTAAGACCATAGTTGGACCATGGCAATGTTTATATGTAAGACCATAGATGGGCTATGACATT
1 AACGTAAGACCATGGTTGGACCATGGCAATG-TTATATGTAAGACCATAGTTGGACTATGGCATT
*
94302332 CTGATGATAAGACCATAACTGGGTTATGGCACTAT
65 CTGATGATAAGACCATAACTGGGTTATGGCACTAG
* * * * *
94302367 AGACGTAAGACCATGGTTGGACCATGGTAATATTATATGAAAGGCCATAGCTGAGA-TATGGCAT
1 A-ACGTAAGACCATGGTTGGACCATGGCAATGTTATATGTAAGACCATAGTTG-GACTATGGCAT
* *
94302431 TCTGATGATAAGACCATAACTAGGTCATGGCACTTTAG
64 TCTGATGATAAGACCATAACTGGGTTATGGCAC--TAG
* * *
94302469 -ACGTAAGACCATGGTTGGACCATGGCAGTGTTATACGTAAGACCATAGTTGGACTATGGCATTT
1 AACGTAAGACCATGGTTGGACCATGGCAATGTTATATGTAAGACCATAGTTGGACTATGGCATTC
*
94302533 TGATGATAAGACCATAACTGGGTTATGACACTACG
66 TGATGATAAGACCATAACTGGGTTATGGCACTA-G
* * ** * * *
94302568 AATGTAAGACTATGGCAAGG-CCATGACAATG-CATATGTAAGACCATAGTGGGACTATGGCA
1 AACGTAAGACCATGG-TTGGACCATGGCAATGTTATATGTAAGACCATAGTTGGACTATGGCA
94302629 CAAGGAAATG
Statistics
Matches: 223, Mismatches: 31, Indels: 17
0.82 0.11 0.06
Matches are distributed among these distances:
98 2 0.01
99 30 0.13
100 159 0.71
101 30 0.13
102 2 0.01
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.26
Consensus pattern (99 bp):
AACGTAAGACCATGGTTGGACCATGGCAATGTTATATGTAAGACCATAGTTGGACTATGGCATTC
TGATGATAAGACCATAACTGGGTTATGGCACTAG
Found at i:94303849 original size:17 final size:17
Alignment explanation
Indices: 94303823--94303861 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
94303813 AGATTATTGA
94303823 AAGCTCAATCAGGTTGG
1 AAGCTCAATCAGGTTGG
*
94303840 AAGCTTAATCAGGTTGG
1 AAGCTCAATCAGGTTGG
94303857 AAGCT
1 AAGCT
94303862 AGTCAGAGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.31, C:0.15, G:0.28, T:0.26
Consensus pattern (17 bp):
AAGCTCAATCAGGTTGG
Found at i:94306038 original size:5 final size:5
Alignment explanation
Indices: 94306028--94306060 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
94306018 TATATATATA
94306028 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATA
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATA
94306061 CTTAATTATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
ATAAT
Found at i:94311948 original size:48 final size:48
Alignment explanation
Indices: 94311877--94311996 Score: 231
Period size: 48 Copynumber: 2.5 Consensus size: 48
94311867 ATGACAAACA
*
94311877 TCAATTATTTACCCTATTAACAAATGATCTCATTTTCAAAATTTCATT
1 TCAATTATTTACCCTATTAACAAATAATCTCATTTTCAAAATTTCATT
94311925 TCAATTATTTACCCTATTAACAAATAATCTCATTTTCAAAATTTCATT
1 TCAATTATTTACCCTATTAACAAATAATCTCATTTTCAAAATTTCATT
94311973 TCAATTATTTACCCTATTAACAAA
1 TCAATTATTTACCCTATTAACAAA
94311997 GCTCAGACTA
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
48 71 1.00
ACGTcount: A:0.38, C:0.19, G:0.01, T:0.42
Consensus pattern (48 bp):
TCAATTATTTACCCTATTAACAAATAATCTCATTTTCAAAATTTCATT
Found at i:94312589 original size:5 final size:5
Alignment explanation
Indices: 94312579--94312628 Score: 100
Period size: 5 Copynumber: 10.0 Consensus size: 5
94312569 TATATATATA
94312579 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
94312629 CAATAAAATC
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 45 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
ATAAT
Found at i:94313070 original size:93 final size:93
Alignment explanation
Indices: 94312911--94313096 Score: 372
Period size: 93 Copynumber: 2.0 Consensus size: 93
94312901 CGGATTTTGG
94312911 GTCGTTACACACATGGTCGTGTGACCCTTGTAGTATGAATTTTTCTATCTTTTTCCATAAATTTC
1 GTCGTTACACACATGGTCGTGTGACCCTTGTAGTATGAATTTTTCTATCTTTTTCCATAAATTTC
94312976 TAAATGTTTTCGATTTAGTCCTGAATCA
66 TAAATGTTTTCGATTTAGTCCTGAATCA
94313004 GTCGTTACACACATGGTCGTGTGACCCTTGTAGTATGAATTTTTCTATCTTTTTCCATAAATTTC
1 GTCGTTACACACATGGTCGTGTGACCCTTGTAGTATGAATTTTTCTATCTTTTTCCATAAATTTC
94313069 TAAATGTTTTCGATTTAGTCCTGAATCA
66 TAAATGTTTTCGATTTAGTCCTGAATCA
94313097 TTTCTAAAGT
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
93 93 1.00
ACGTcount: A:0.24, C:0.18, G:0.15, T:0.43
Consensus pattern (93 bp):
GTCGTTACACACATGGTCGTGTGACCCTTGTAGTATGAATTTTTCTATCTTTTTCCATAAATTTC
TAAATGTTTTCGATTTAGTCCTGAATCA
Found at i:94313423 original size:24 final size:24
Alignment explanation
Indices: 94313396--94313448 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
94313386 TTATGAAAAG
**
94313396 AAATAACAAAGATTTTATGCTAAT
1 AAATAACAAAGATACTATGCTAAT
* *
94313420 AAATATCAAATATACTATGCTAAT
1 AAATAACAAAGATACTATGCTAAT
94313444 AAATA
1 AAATA
94313449 CTAAATCTCC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.53, C:0.09, G:0.06, T:0.32
Consensus pattern (24 bp):
AAATAACAAAGATACTATGCTAAT
Found at i:94314340 original size:1 final size:1
Alignment explanation
Indices: 94314336--94314364 Score: 58
Period size: 1 Copynumber: 29.0 Consensus size: 1
94314326 TCACATCTAC
94314336 AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
94314365 GAAGAAGAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 28 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:94316235 original size:13 final size:11
Alignment explanation
Indices: 94316199--94316229 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
94316189 GCCCCTGTAT
94316199 TAATTTTTATA
1 TAATTTTTATA
*
94316210 TTATTTTTATA
1 TAATTTTTATA
94316221 TAATTTTTA
1 TAATTTTTA
94316230 AATATATATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (11 bp):
TAATTTTTATA
Found at i:94316389 original size:30 final size:30
Alignment explanation
Indices: 94316355--94316419 Score: 114
Period size: 30 Copynumber: 2.2 Consensus size: 30
94316345 CAACTTAACA
94316355 AACAAATGCC-TCTAAAATAATAACAAAATT
1 AACAAATGCCTTC-AAAATAATAACAAAATT
94316385 AACAAATGCCTTCAAAATAATAACAAAATT
1 AACAAATGCCTTCAAAATAATAACAAAATT
94316415 AACAA
1 AACAA
94316420 TAACATAAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
30 32 0.94
31 2 0.06
ACGTcount: A:0.58, C:0.17, G:0.03, T:0.22
Consensus pattern (30 bp):
AACAAATGCCTTCAAAATAATAACAAAATT
Found at i:94316474 original size:22 final size:22
Alignment explanation
Indices: 94316449--94316491 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
94316439 TATCCAAACA
94316449 ATAACAATAAAATAGTAGCAAC
1 ATAACAATAAAATAGTAGCAAC
* * *
94316471 ATAATAGTAAAATGGTAGCAA
1 ATAACAATAAAATAGTAGCAA
94316492 AATAGGGAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.56, C:0.09, G:0.14, T:0.21
Consensus pattern (22 bp):
ATAACAATAAAATAGTAGCAAC
Found at i:94318968 original size:9 final size:9
Alignment explanation
Indices: 94318951--94318984 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
94318941 TCATCACCAC
94318951 TTTCATTCCT
1 TTTC-TTCCT
94318961 TTTCTTCCT
1 TTTCTTCCT
94318970 TTTCTTCC-
1 TTTCTTCCT
94318978 TTTCTTC
1 TTTCTTC
94318985 TTCATGCTCT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 7 0.29
9 13 0.54
10 4 0.17
ACGTcount: A:0.03, C:0.32, G:0.00, T:0.65
Consensus pattern (9 bp):
TTTCTTCCT
Found at i:94333979 original size:10 final size:10
Alignment explanation
Indices: 94333964--94333990 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
94333954 CAATGCCTAC
94333964 TTTTTTTTCT
1 TTTTTTTTCT
94333974 TTTTTTTTCT
1 TTTTTTTTCT
94333984 TTTTTTT
1 TTTTTTT
94333991 GATATAAAGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.00, C:0.07, G:0.00, T:0.93
Consensus pattern (10 bp):
TTTTTTTTCT
Found at i:94335594 original size:17 final size:18
Alignment explanation
Indices: 94335572--94335605 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
94335562 CAATTTGGGC
94335572 CGTGT-GACCCACACGGA
1 CGTGTGGACCCACACGGA
*
94335589 CGTGTGGGCCCACACGG
1 CGTGTGGACCCACACGG
94335606 GCAAAGCACA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.18, C:0.35, G:0.35, T:0.12
Consensus pattern (18 bp):
CGTGTGGACCCACACGGA
Found at i:94336009 original size:40 final size:40
Alignment explanation
Indices: 94335946--94336023 Score: 120
Period size: 40 Copynumber: 1.9 Consensus size: 40
94335936 TGCGGTACCT
* *
94335946 TATGGTGTGTAGGGTTGGATGGGTCGATTATATCCCCATA
1 TATGGTATGTAGGGATGGATGGGTCGATTATATCCCCATA
* *
94335986 TATGGTATGTAGGGATGGGTGGGTCGATTTTATCCCCA
1 TATGGTATGTAGGGATGGATGGGTCGATTATATCCCCA
94336024 CATGGTGTGT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.19, C:0.13, G:0.33, T:0.35
Consensus pattern (40 bp):
TATGGTATGTAGGGATGGATGGGTCGATTATATCCCCATA
Found at i:94338537 original size:27 final size:29
Alignment explanation
Indices: 94338480--94338539 Score: 70
Period size: 31 Copynumber: 2.1 Consensus size: 29
94338470 AAATATAAAA
*
94338480 ATAGAAATAAATATATAAAATGTTCAAATAT
1 ATAGAAATAAATATAGAAAATGTT--AATAT
*
94338511 ATAGAAATAAATCTAGAAAAT-TT-ATAT
1 ATAGAAATAAATATAGAAAATGTTAATAT
94338538 AT
1 AT
94338540 TTTATTAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
27 6 0.22
30 2 0.07
31 19 0.70
ACGTcount: A:0.57, C:0.03, G:0.07, T:0.33
Consensus pattern (29 bp):
ATAGAAATAAATATAGAAAATGTTAATAT
Found at i:94338616 original size:22 final size:21
Alignment explanation
Indices: 94338591--94338647 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 21
94338581 ATATTAGTTG
*
94338591 AAATTAAAAATATTATTTTAAA
1 AAATTAAAAATATT-TTGTAAA
94338613 AAATGTAAAAGA-ATTTTGTAAA
1 AAAT-TAAAA-ATATTTTGTAAA
94338635 AAATTTAAAAATA
1 AAA-TTAAAAATA
94338648 ATTAAAAAGG
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
21 1 0.03
22 19 0.63
23 9 0.30
24 1 0.03
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (21 bp):
AAATTAAAAATATTTTGTAAA
Found at i:94339489 original size:2 final size:2
Alignment explanation
Indices: 94339482--94339509 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
94339472 TTTGAAAATT
94339482 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
94339510 AGTAGCTACT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:94344507 original size:16 final size:16
Alignment explanation
Indices: 94344486--94344522 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
94344476 TTAAAAAATT
94344486 TAAAATATATA-ATTTC
1 TAAAATATATAGA-TTC
94344502 TAAAATATATAGATTC
1 TAAAATATATAGATTC
94344518 TAAAA
1 TAAAA
94344523 ATGTTAGTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 19 0.95
17 1 0.05
ACGTcount: A:0.54, C:0.05, G:0.03, T:0.38
Consensus pattern (16 bp):
TAAAATATATAGATTC
Found at i:94354774 original size:19 final size:19
Alignment explanation
Indices: 94354749--94354819 Score: 72
Period size: 20 Copynumber: 3.6 Consensus size: 19
94354739 TTACAAAAAA
*
94354749 AAAAAATCAAAATTATTTTC
1 AAAAATTCAAAA-TATTTTC
*
94354769 AAAAATTCAAAATATTTTTT
1 AAAAATTCAAAATA-TTTTC
* *
94354789 TAAAATACAAAATATTTAT-
1 AAAAATTCAAAATATTT-TC
94354808 AAAAATTCAAAA
1 AAAAATTCAAAA
94354820 GAATATATAC
Statistics
Matches: 43, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
19 15 0.35
20 28 0.65
ACGTcount: A:0.58, C:0.07, G:0.00, T:0.35
Consensus pattern (19 bp):
AAAAATTCAAAATATTTTC
Found at i:94355708 original size:57 final size:58
Alignment explanation
Indices: 94355633--94355745 Score: 183
Period size: 57 Copynumber: 2.0 Consensus size: 58
94355623 AATTAATCAC
* * * *
94355633 ATTAATATTAAATTAATAAAATATTATCTAGATAAATATTTAATTTAATTTAATATCT
1 ATTAATATTAAATTAATAAAATACTATCTAGATAAATAGTAAATTAAATTTAATATCT
94355691 ATTAATATT-AATTAATAAAATACTATCTAGATAAATAGTAAATTAAATTTAATAT
1 ATTAATATTAAATTAATAAAATACTATCTAGATAAATAGTAAATTAAATTTAATAT
94355746 TAAATTTATT
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
57 42 0.82
58 9 0.18
ACGTcount: A:0.50, C:0.04, G:0.03, T:0.43
Consensus pattern (58 bp):
ATTAATATTAAATTAATAAAATACTATCTAGATAAATAGTAAATTAAATTTAATATCT
Found at i:94356428 original size:23 final size:22
Alignment explanation
Indices: 94356391--94356455 Score: 64
Period size: 23 Copynumber: 3.0 Consensus size: 22
94356381 GGAGATATGC
94356391 AATCTTA-A-ATATGATATGTA
1 AATCTTAGAGATATGATATGTA
*
94356411 AATCTTAGAAGATATGATTCTGT-
1 AATCTTAG-AGATATGA-TATGTA
* *
94356434 AATCTTAGAGATTTGATTTGTA
1 AATCTTAGAGATATGATATGTA
94356456 GATAGCTTTT
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
20 7 0.19
21 4 0.11
22 8 0.22
23 14 0.38
24 4 0.11
ACGTcount: A:0.37, C:0.06, G:0.15, T:0.42
Consensus pattern (22 bp):
AATCTTAGAGATATGATATGTA
Found at i:94356450 original size:22 final size:22
Alignment explanation
Indices: 94356399--94356455 Score: 71
Period size: 23 Copynumber: 2.5 Consensus size: 22
94356389 GCAATCTTAA
*
94356399 ATATGATATGTAAATCTTAGAAG
1 ATATGATTTGT-AATCTTAGAAG
94356422 ATATGATTCTGTAATCTTAG-AG
1 ATATGATT-TGTAATCTTAGAAG
*
94356444 ATTTGATTTGTA
1 ATATGATTTGTA
94356456 GATAGCTTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
21 4 0.13
22 9 0.29
23 15 0.48
24 3 0.10
ACGTcount: A:0.35, C:0.05, G:0.18, T:0.42
Consensus pattern (22 bp):
ATATGATTTGTAATCTTAGAAG
Found at i:94358252 original size:5 final size:5
Alignment explanation
Indices: 94358242--94358273 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
94358232 TTGTGTGTTC
94358242 TTTAT TTTA- TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
94358274 TCACAAATTG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:94358256 original size:9 final size:9
Alignment explanation
Indices: 94358242--94358272 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
94358232 TTGTGTGTTC
94358242 TTTATTTTA
1 TTTATTTTA
94358251 TTTATTTTA
1 TTTATTTTA
94358260 TTTTATTTTA
1 -TTTATTTTA
94358270 TTT
1 TTT
94358273 TTCACAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (9 bp):
TTTATTTTA
Found at i:94361348 original size:50 final size:50
Alignment explanation
Indices: 94361273--94361448 Score: 248
Period size: 50 Copynumber: 3.5 Consensus size: 50
94361263 CCATGGAAAC
94361273 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* * * *
94361323 AAGTGATAAGTAATAACTTCGGCTACACTTATCTGATTAAGGACAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
94361373 AAGTGATAA-TGATAGCTTCGGCTACACTTATCTGATCAATGG-CAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAA-GGACAAATGA
* * * *
94361422 CAACTGAAAAGTGGTAGCTTCAGCTAC
1 -AAGTGATAAGTGATAGCTTCGGCTAC
94361449 CTGATCAGTG
Statistics
Matches: 111, Mismatches: 12, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
49 33 0.30
50 64 0.58
51 14 0.13
ACGTcount: A:0.36, C:0.16, G:0.21, T:0.27
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
Found at i:94361603 original size:31 final size:31
Alignment explanation
Indices: 94361426--94361596 Score: 270
Period size: 31 Copynumber: 5.5 Consensus size: 31
94361416 AAATGACAAC
94361426 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
*
94361457 TGAAAAGTGGTAGTTTCAGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
*
94361488 TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
* *
94361519 TGAAAAGTGGTAGCTCCGGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
* **
94361550 TGAAAAATGGTAGCACCAGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
*
94361581 TGAATAGTGGTAGCTT
1 TGAAAAGTGGTAGCTT
94361597 TGGCTACAAG
Statistics
Matches: 129, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 129 1.00
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.26
Consensus pattern (31 bp):
TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
Found at i:94361614 original size:7 final size:7
Alignment explanation
Indices: 94361602--94361627 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
94361592 AGCTTTGGCT
94361602 ACAAGTG
1 ACAAGTG
94361609 ACAAGTG
1 ACAAGTG
94361616 ACAAGTG
1 ACAAGTG
94361623 ACAAG
1 ACAAG
94361628 CGATTTCTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.46, C:0.15, G:0.27, T:0.12
Consensus pattern (7 bp):
ACAAGTG
Found at i:94361721 original size:47 final size:48
Alignment explanation
Indices: 94361634--94361759 Score: 157
Period size: 47 Copynumber: 2.7 Consensus size: 48
94361624 CAAGCGATTT
* * *
94361634 CTGTATAAGACCATATCTGGGATATGGTATCGGTGTGATATATG-CTA
1 CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGACTA
* * *
94361681 CTGTATAAGACCATATCTGGGATATGACATCAGTGAGATATGTGATTA
1 CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGACTA
* * *
94361729 C-GTGTAAGACCATAGCTGGGCTATGGCATCA
1 CTGTATAAGACCATATCTGGGATATGGCATCA
94361760 TTATGTAAAG
Statistics
Matches: 68, Mismatches: 10, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
47 65 0.96
48 3 0.04
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.30
Consensus pattern (48 bp):
CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGACTA
Found at i:94363248 original size:5 final size:5
Alignment explanation
Indices: 94363238--94363274 Score: 67
Period size: 5 Copynumber: 7.6 Consensus size: 5
94363228 TTGTGTGTTC
94363238 TTTAT TTTA- TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
94363275 TCACATTTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
4 4 0.13
5 27 0.87
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:94365067 original size:2 final size:2
Alignment explanation
Indices: 94365062--94365098 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
94365052 ATAGACTACT
94365062 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
94365099 ATAGGTCAGG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.00, C:0.00, G:0.49, T:0.51
Consensus pattern (2 bp):
TG
Found at i:94368147 original size:15 final size:15
Alignment explanation
Indices: 94368129--94368159 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
94368119 ATCTCTCATC
94368129 TATCTATCCATTTTT
1 TATCTATCCATTTTT
*
94368144 TATCTATCTATTTTT
1 TATCTATCCATTTTT
94368159 T
1 T
94368160 CTTTAGTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.16, G:0.00, T:0.65
Consensus pattern (15 bp):
TATCTATCCATTTTT
Found at i:94372343 original size:5 final size:5
Alignment explanation
Indices: 94372333--94372368 Score: 63
Period size: 5 Copynumber: 7.0 Consensus size: 5
94372323 AATAATTAAG
94372333 TATAT TATAT TATAT TATAT TATAT TATTAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TA-TAT TATAT
94372369 AAAAGAAACA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 25 0.83
6 5 0.17
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
TATAT
Found at i:94372436 original size:31 final size:30
Alignment explanation
Indices: 94372401--94372461 Score: 70
Period size: 30 Copynumber: 2.0 Consensus size: 30
94372391 GAAACAGAAT
*
94372401 GAAAGCAAACGAAAC-AGAGAAGAACAGGGGA
1 GAAAG-AAACGAAACAAGA-AAGAAAAGGGGA
* *
94372432 GAAAGAAAGGAAAGAAGAAAGAAAAGGGGA
1 GAAAGAAACGAAACAAGAAAGAAAAGGGGA
94372462 AATAAGTTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
30 18 0.69
31 8 0.31
ACGTcount: A:0.59, C:0.07, G:0.34, T:0.00
Consensus pattern (30 bp):
GAAAGAAACGAAACAAGAAAGAAAAGGGGA
Found at i:94374033 original size:39 final size:39
Alignment explanation
Indices: 94373926--94374060 Score: 123
Period size: 39 Copynumber: 3.4 Consensus size: 39
94373916 GACCTCGAGT
* * *
94373926 CGATGAGACACTGGGTGTC-ACTATATTTCTTCGGATAGATT
1 CGATGAGACACTGGGTGTCAAC--TATTACTTCGGCTAG-TC
** ** *
94373967 CGATGAGGTACTGGGTACCAACT-TTACTTCGGCTAGGC
1 CGATGAGACACTGGGTGTCAACTATTACTTCGGCTAGTC
*
94374005 CGATGAGACACTGGGTGTCAACTATTACTTCGAACTA-TC
1 CGATGAGACACTGGGTGTCAACTATTACTTCG-GCTAGTC
*
94374044 CGATGAGGCACTGGGTG
1 CGATGAGACACTGGGTG
94374061 CCATATTGGT
Statistics
Matches: 76, Mismatches: 15, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
38 19 0.25
39 36 0.47
40 4 0.05
41 15 0.20
42 2 0.03
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAACTATTACTTCGGCTAGTC
Found at i:94380108 original size:5 final size:5
Alignment explanation
Indices: 94380098--94380133 Score: 63
Period size: 5 Copynumber: 7.0 Consensus size: 5
94380088 AATAATTAAG
94380098 TATAT TATAT TATAT TATAT TATAT TATTAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TA-TAT TATAT
94380134 AAAAGAAACA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 25 0.83
6 5 0.17
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
TATAT
Found at i:94380200 original size:31 final size:30
Alignment explanation
Indices: 94380165--94380225 Score: 70
Period size: 30 Copynumber: 2.0 Consensus size: 30
94380155 GAAACAGAAT
*
94380165 GAAAGCAAACGAAAC-AGAGAAGAACAGGGGA
1 GAAAG-AAACGAAACAAGA-AAGAAAAGGGGA
* *
94380196 GAAAGAAAGGAAAGAAGAAAGAAAAGGGGA
1 GAAAGAAACGAAACAAGAAAGAAAAGGGGA
94380226 AATAAGTTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
30 18 0.69
31 8 0.31
ACGTcount: A:0.59, C:0.07, G:0.34, T:0.00
Consensus pattern (30 bp):
GAAAGAAACGAAACAAGAAAGAAAAGGGGA
Found at i:94381794 original size:39 final size:39
Alignment explanation
Indices: 94381687--94381821 Score: 123
Period size: 39 Copynumber: 3.4 Consensus size: 39
94381677 GACCTCGAGT
* * *
94381687 CGATGAGACACTGGGTGTC-ACTATATTTCTTCGGATAGATT
1 CGATGAGACACTGGGTGTCAAC--TATTACTTCGGCTAG-TC
** ** *
94381728 CGATGAGGTACTGGGTACCAACT-TTACTTCGGCTAGGC
1 CGATGAGACACTGGGTGTCAACTATTACTTCGGCTAGTC
*
94381766 CGATGAGACACTGGGTGTCAACTATTACTTCGAACTA-TC
1 CGATGAGACACTGGGTGTCAACTATTACTTCG-GCTAGTC
*
94381805 CGATGAGGCACTGGGTG
1 CGATGAGACACTGGGTG
94381822 CCATATTGGT
Statistics
Matches: 76, Mismatches: 15, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
38 19 0.25
39 36 0.47
40 4 0.05
41 15 0.20
42 2 0.03
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAACTATTACTTCGGCTAGTC
Found at i:94383942 original size:21 final size:21
Alignment explanation
Indices: 94383918--94383958 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
94383908 AAAAATTATA
*
94383918 TTTAATACAATAAAATATTTT
1 TTTAATACAATAAAACATTTT
* *
94383939 TTTAGTATAATAAAACATTT
1 TTTAATACAATAAAACATTT
94383959 ATTATATTTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.46, C:0.05, G:0.02, T:0.46
Consensus pattern (21 bp):
TTTAATACAATAAAACATTTT
Found at i:94386891 original size:126 final size:125
Alignment explanation
Indices: 94386730--94386972 Score: 441
Period size: 125 Copynumber: 1.9 Consensus size: 125
94386720 GTTTTAGCCT
94386730 TAAGAGGATATTCGAACATTCAAAACAAACAAAGAAAGCGAAACCCAGTACGTTAGGGCACGATT
1 TAAGAGGATATTCGAACATTCAAAACAAACAAAGAAAGCGAAACCCAGTACGTTA-GGCACGATT
* *
94386795 CTTCGAATTCTTTAAATACCGAACATTGCCTTTATTTTGAAAATTTTTTAGAGTGAACTGG
65 CTTCGAATTCTTTAAATACCGAACATTGCCTTTATTTTGAAAAATTTTGAGAGTGAACTGG
* *
94386856 TAAGAGGATATTCGAATATTCAAGACAAACAAAGAAAGCGAAACCCAGTACGTTAGGCACGATTC
1 TAAGAGGATATTCGAACATTCAAAACAAACAAAGAAAGCGAAACCCAGTACGTTAGGCACGATTC
94386921 TTCGAATTCTTTAAATACCGAACATTGCCTTTATTTTGAAAAATTTTGAGAG
66 TTCGAATTCTTTAAATACCGAACATTGCCTTTATTTTGAAAAATTTTGAGAG
94386973 AAGATCAATG
Statistics
Matches: 113, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
125 60 0.53
126 53 0.47
ACGTcount: A:0.38, C:0.16, G:0.17, T:0.28
Consensus pattern (125 bp):
TAAGAGGATATTCGAACATTCAAAACAAACAAAGAAAGCGAAACCCAGTACGTTAGGCACGATTC
TTCGAATTCTTTAAATACCGAACATTGCCTTTATTTTGAAAAATTTTGAGAGTGAACTGG
Found at i:94387105 original size:13 final size:12
Alignment explanation
Indices: 94387073--94387122 Score: 52
Period size: 13 Copynumber: 4.2 Consensus size: 12
94387063 AACCATATAT
94387073 AAATAA-TAA-A
1 AAATAATTAATA
94387083 AAATAA-TAATA
1 AAATAATTAATA
*
94387094 ATAGTAATTAATA
1 A-AATAATTAATA
94387107 GAAATAATTAATA
1 -AAATAATTAATA
94387120 AAA
1 AAA
94387123 CAACAGTAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
10 9 0.26
11 2 0.06
12 7 0.21
13 15 0.44
14 1 0.03
ACGTcount: A:0.68, C:0.00, G:0.04, T:0.28
Consensus pattern (12 bp):
AAATAATTAATA
Found at i:94387450 original size:14 final size:15
Alignment explanation
Indices: 94387431--94387471 Score: 61
Period size: 14 Copynumber: 2.9 Consensus size: 15
94387421 ATATATTTAC
94387431 ATAATAAAT-ATATA
1 ATAATAAATAATATA
94387445 ATAATAAATAATATA
1 ATAATAAATAATATA
94387460 AT-AT-AATAATAT
1 ATAATAAATAATAT
94387472 GAAACATAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
13 8 0.31
14 11 0.42
15 7 0.27
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (15 bp):
ATAATAAATAATATA
Found at i:94387866 original size:18 final size:18
Alignment explanation
Indices: 94387843--94387878 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
94387833 ATAACAAGTA
*
94387843 GGGTGATGGAGTTAGTGG
1 GGGTGATGGAGGTAGTGG
94387861 GGGTGATGGAGGTAGTGG
1 GGGTGATGGAGGTAGTGG
94387879 ATGGTTCAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.17, C:0.00, G:0.58, T:0.25
Consensus pattern (18 bp):
GGGTGATGGAGGTAGTGG
Found at i:94387951 original size:29 final size:29
Alignment explanation
Indices: 94387898--94387954 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
94387888 TAGAGTGTAG
* *
94387898 GGGTGATGGAGGTAGTGGATGGTTTAGTA
1 GGGTGATGGAGCTAGTGGATAGTTTAGTA
94387927 GGGTGATGGAGCTAGTGG-TCAGTTTAGT
1 GGGTGATGGAGCTAGTGGAT-AGTTTAGT
94387955 GGAGTGTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 1 0.04
29 24 0.96
ACGTcount: A:0.19, C:0.04, G:0.46, T:0.32
Consensus pattern (29 bp):
GGGTGATGGAGCTAGTGGATAGTTTAGTA
Found at i:94388323 original size:7 final size:7
Alignment explanation
Indices: 94388311--94388336 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
94388301 GTTTGAAATT
94388311 TTTATTA
1 TTTATTA
94388318 TTTATTA
1 TTTATTA
94388325 TTTATTA
1 TTTATTA
94388332 TTTAT
1 TTTAT
94388337 GAGTTAAATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (7 bp):
TTTATTA
Found at i:94389709 original size:33 final size:33
Alignment explanation
Indices: 94389667--94389809 Score: 101
Period size: 33 Copynumber: 4.3 Consensus size: 33
94389657 GAATTGACAG
94389667 ATAAGACCATAACTGGGTTATGGCACTATGAAT
1 ATAAGACCATAACTGGGTTATGGCACTATGAAT
** * * * * * *
94389700 ATAAGACCAT-GGTTGGATATGGTAGTGTTTATAT
1 ATAAGACCATAACTGGGTTATGGCACT-ATGA-AT
* * * * *
94389734 GTAAGACCATAGCTGGGCTATGACACTCTG-AT
1 ATAAGACCATAACTGGGTTATGGCACTATGAAT
* *
94389766 GATAAGACCATAACTAGGTTATGGCACTACGAAT
1 -ATAAGACCATAACTGGGTTATGGCACTATGAAT
*
94389800 GTAAGACCAT
1 ATAAGACCAT
94389810 GGTTGGACCA
Statistics
Matches: 80, Mismatches: 25, Indels: 10
0.70 0.22 0.09
Matches are distributed among these distances:
32 12 0.15
33 44 0.55
34 14 0.17
35 10 0.12
ACGTcount: A:0.34, C:0.15, G:0.23, T:0.28
Consensus pattern (33 bp):
ATAAGACCATAACTGGGTTATGGCACTATGAAT
Found at i:94389823 original size:33 final size:33
Alignment explanation
Indices: 94389786--94389858 Score: 85
Period size: 33 Copynumber: 2.2 Consensus size: 33
94389776 TAACTAGGTT
*
94389786 ATGGCACTACGA-ATGTAAGACCATGGTTGGACC
1 ATGGCACTAC-ATATGTAAGACCATAGTTGGACC
* * * *
94389819 ATGGCAATGCATGTGTAAGACCATAGTTGGACT
1 ATGGCACTACATATGTAAGACCATAGTTGGACC
94389852 ATGGCAC
1 ATGGCAC
94389859 AAAGAAAACG
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
32 1 0.03
33 32 0.97
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.23
Consensus pattern (33 bp):
ATGGCACTACATATGTAAGACCATAGTTGGACC
Found at i:94394543 original size:23 final size:23
Alignment explanation
Indices: 94394461--94394547 Score: 83
Period size: 21 Copynumber: 4.0 Consensus size: 23
94394451 CCTGATCAGT
*
94394461 ATACGACACATAAAGTGCCT-AA
1 ATACGACACACAAAGTGCCTGAA
* *
94394483 A-ACGACACACGAGGTGCCTG--
1 ATACGACACACAAAGTGCCTGAA
* *
94394503 ATACGACACACGAGGTGCCTGAA
1 ATACGACACACAAAGTGCCTGAA
* *
94394526 ATATGACACATAAAGTGCCTGA
1 ATACGACACACAAAGTGCCTGA
94394548 TCGATAAAGC
Statistics
Matches: 54, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
20 1 0.02
21 34 0.63
22 1 0.02
23 18 0.33
ACGTcount: A:0.38, C:0.24, G:0.22, T:0.16
Consensus pattern (23 bp):
ATACGACACACAAAGTGCCTGAA
Found at i:94394943 original size:15 final size:15
Alignment explanation
Indices: 94394918--94394975 Score: 82
Period size: 15 Copynumber: 3.8 Consensus size: 15
94394908 TCATATATAT
94394918 TATATAATTCAATCAA
1 TATA-AATTCAATCAA
94394934 TATAAATTCAATCAA
1 TATAAATTCAATCAA
*
94394949 AAT-AATTCCAATCAA
1 TATAAATT-CAATCAA
94394964 TATAAATTCAAT
1 TATAAATTCAAT
94394976 AAAATCATCG
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
14 4 0.11
15 26 0.68
16 8 0.21
ACGTcount: A:0.52, C:0.14, G:0.00, T:0.34
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:94394963 original size:30 final size:28
Alignment explanation
Indices: 94394921--94394980 Score: 102
Period size: 30 Copynumber: 2.1 Consensus size: 28
94394911 TATATATTAT
94394921 ATAATTCAATCAATATAAATTCAATCAAA
1 ATAATTCAATCAATATAAATTCAAT-AAA
94394950 ATAATTCCAATCAATATAAATTCAATAAA
1 ATAATT-CAATCAATATAAATTCAATAAA
94394979 AT
1 AT
94394981 CATCGCATAC
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
29 11 0.37
30 19 0.63
ACGTcount: A:0.55, C:0.13, G:0.00, T:0.32
Consensus pattern (28 bp):
ATAATTCAATCAATATAAATTCAATAAA
Found at i:94396262 original size:5 final size:5
Alignment explanation
Indices: 94396248--94396300 Score: 97
Period size: 5 Copynumber: 10.4 Consensus size: 5
94396238 TTTAGTTTAT
94396248 ATATA TATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
1 ATATA -ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
94396299 AT
1 AT
94396301 TAAAACATAA
Statistics
Matches: 47, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
5 42 0.89
6 5 0.11
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (5 bp):
ATATA
Found at i:94398773 original size:17 final size:17
Alignment explanation
Indices: 94398751--94398787 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
94398741 TAAATAAGAG
* *
94398751 AAAATAAAATTGAAATA
1 AAAATAAAAATAAAATA
94398768 AAAATAAAAATAAAATA
1 AAAATAAAAATAAAATA
94398785 AAA
1 AAA
94398788 GGACTCAAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.78, C:0.00, G:0.03, T:0.19
Consensus pattern (17 bp):
AAAATAAAAATAAAATA
Found at i:94400410 original size:17 final size:17
Alignment explanation
Indices: 94400390--94400430 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
94400380 ATAAAGGAGT
*
94400390 AAATGAAATAGAAATAA
1 AAATAAAATAGAAATAA
*
94400407 AAATAAAATAGTAATAA
1 AAATAAAATAGAAATAA
94400424 AAA-AAAA
1 AAATAAAA
94400431 GGAAAAAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 4 0.18
17 18 0.82
ACGTcount: A:0.76, C:0.00, G:0.07, T:0.17
Consensus pattern (17 bp):
AAATAAAATAGAAATAA
Found at i:94400669 original size:19 final size:19
Alignment explanation
Indices: 94400647--94400686 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
94400637 AGGGAAGAAG
*
94400647 AAAAGGGAAAGAAGAAGGA
1 AAAAAGGAAAGAAGAAGGA
* *
94400666 AAAAATGACAGAAGAAGGA
1 AAAAAGGAAAGAAGAAGGA
94400685 AA
1 AA
94400687 GAAAAAAAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.65, C:0.03, G:0.30, T:0.03
Consensus pattern (19 bp):
AAAAAGGAAAGAAGAAGGA
Found at i:94400697 original size:19 final size:19
Alignment explanation
Indices: 94400654--94400710 Score: 64
Period size: 19 Copynumber: 3.1 Consensus size: 19
94400644 AAGAAAAGGG
*
94400654 AAAGAAGAAGGAAA-AAATG
1 AAAGAAGAAGGAAAGAAA-A
*
94400673 ACAGAAGAAGGAAAGAAAA
1 AAAGAAGAAGGAAAGAAAA
*
94400692 AAAGAA-AAAGAAAGAAAA
1 AAAGAAGAAGGAAAGAAAA
94400710 A
1 A
94400711 GAGGAGAAAG
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
18 12 0.36
19 18 0.55
20 3 0.09
ACGTcount: A:0.74, C:0.02, G:0.23, T:0.02
Consensus pattern (19 bp):
AAAGAAGAAGGAAAGAAAA
Found at i:94408206 original size:76 final size:76
Alignment explanation
Indices: 94408076--94408276 Score: 285
Period size: 76 Copynumber: 2.6 Consensus size: 76
94408066 TTATTTGACT
* * *
94408076 AGCGCTAGGTGCAAATCTTTGTCGATTTATTCGACTAGTGTTAGGTACACAATTAATATCGCCAG
1 AGCGCTAGGTGCAAATCTTTGTCGATTTATTCGACTAGTGCTGGGCACACAATTAATATCGCCAG
94408141 CTAATCTAACA
66 CTAATCTAACA
* * * *
94408152 AGCTCTAGGCGCAAATCTTTGTCGATTTATTCGACTAGTGCTGGGCATACAATTAATATCGTCAG
1 AGCGCTAGGTGCAAATCTTTGTCGATTTATTCGACTAGTGCTGGGCACACAATTAATATCGCCAG
* * *
94408217 TTAATCTGACT
66 CTAATCTAACA
* * *
94408228 AGCGCTGGGTGCAAATCTTTGTTGATTTATTCGACTAGTGCAGGGCACA
1 AGCGCTAGGTGCAAATCTTTGTCGATTTATTCGACTAGTGCTGGGCACA
94408277 TCTAATGTCG
Statistics
Matches: 109, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
76 109 1.00
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.32
Consensus pattern (76 bp):
AGCGCTAGGTGCAAATCTTTGTCGATTTATTCGACTAGTGCTGGGCACACAATTAATATCGCCAG
CTAATCTAACA
Found at i:94411816 original size:2 final size:2
Alignment explanation
Indices: 94411811--94411843 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
94411801 AAATATATGA
94411811 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
94411844 GTAGATGAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:94412525 original size:17 final size:17
Alignment explanation
Indices: 94412503--94412536 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
94412493 ATCTGAAATT
*
94412503 TTCAGTAGTTGCTTTGG
1 TTCAGTAATTGCTTTGG
94412520 TTCAGTAATTGCTTTGG
1 TTCAGTAATTGCTTTGG
94412537 CAACGAATGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.15, C:0.12, G:0.26, T:0.47
Consensus pattern (17 bp):
TTCAGTAATTGCTTTGG
Found at i:94417241 original size:20 final size:20
Alignment explanation
Indices: 94417203--94417250 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
94417193 TAAATTCTAA
* **
94417203 AAAGATAAATACATTTAATT
1 AAAGATAAATAAAGATAATT
94417223 AAAGATAAATAAAGATAATT
1 AAAGATAAATAAAGATAATT
94417243 AAA-ATAAA
1 AAAGATAAA
94417251 ATCCTAAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
19 5 0.20
20 20 0.80
ACGTcount: A:0.65, C:0.02, G:0.06, T:0.27
Consensus pattern (20 bp):
AAAGATAAATAAAGATAATT
Found at i:94421585 original size:5 final size:5
Alignment explanation
Indices: 94421577--94421610 Score: 59
Period size: 5 Copynumber: 6.8 Consensus size: 5
94421567 TTGTGCAGTT
*
94421577 TTTTT TTTTC TTTTC TTTTC TTTTC TTTTC TTTT
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTT
94421611 ACAACATTTG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (5 bp):
TTTTC
Found at i:94429130 original size:19 final size:23
Alignment explanation
Indices: 94429083--94429133 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 23
94429073 ATTTATGAAG
*
94429083 TTAATTGAGTGGATAATTAAGCT
1 TTAATTAAGTGGATAATTAAGCT
94429106 TTAATTAAGT-GA-AATT-AGC-
1 TTAATTAAGTGGATAATTAAGCT
94429125 TTAATTAAG
1 TTAATTAAG
94429134 AGTAATAAGG
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
19 9 0.33
20 3 0.11
21 4 0.15
22 2 0.07
23 9 0.33
ACGTcount: A:0.39, C:0.04, G:0.18, T:0.39
Consensus pattern (23 bp):
TTAATTAAGTGGATAATTAAGCT
Done.